******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/noc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:14497031-14497151 1.0000 120 chr3L:19174443-19174563 1.0000 120 chr3R:25720314-25720434 1.0000 120 chr2L:14504497-14504617 1.0000 120 chr2R:12642575-12642695 1.0000 120 chr2L:14498572-14498692 1.0000 120 chr3R:13900578-13900698 1.0000 120 chr2L:14506153-14506273 1.0000 120 chr3R:29924705-29924825 1.0000 120 chr2R:23845939-23846059 1.0000 120 chr3R:27002941-27003061 1.0000 120 chr2R:21472984-21473104 1.0000 120 chr2R:19362920-19363040 1.0000 120 chr3R:22684807-22684927 1.0000 120 chr2R:8721797-8721917 1.0000 120 chr2R:17054186-17054306 1.0000 120 chr2L:21084406-21084526 1.0000 120 chr3R:21753236-21753356 1.0000 120 chr2L:14534360-14534480 1.0000 120 chrX:12777297-12777417 1.0000 120 chr2R:21836764-21836884 1.0000 120 chr2R:8084261-8084381 1.0000 120 chr2R:11342787-11342907 1.0000 120 chr3L:9640616-9640736 1.0000 120 chr3R:5303567-5303687 1.0000 120 chr2L:7080454-7080574 1.0000 120 chr2L:14496464-14496584 1.0000 120 chr2R:21080314-21080434 1.0000 120 chrX:8108376-8108496 1.0000 120 chr2R:11783883-11784003 1.0000 120 chr3R:29565894-29566014 1.0000 120 chr2R:18618203-18618323 1.0000 120 chr2L:14505560-14505680 1.0000 120 chr2L:3766361-3766481 1.0000 120 chrX:11723321-11723441 1.0000 120 chr3L:8394265-8394385 1.0000 120 chr2R:16665980-16666100 1.0000 120 chr3R:15136991-15137111 1.0000 120 chr2L:5242275-5242395 1.0000 120 chrX:6733808-6733928 1.0000 120 chrX:10489693-10489813 1.0000 120 chr3R:17536903-17537023 1.0000 120 chr3L:20223537-20223657 1.0000 120 chr3R:18474545-18474665 1.0000 120 chr3R:24138851-24138971 1.0000 120 chr2R:14226962-14227082 1.0000 120 chr2R:15220716-15220836 1.0000 120 chr2L:2810828-2810948 1.0000 120 chr3R:9620250-9620370 1.0000 120 chr3R:24029364-24029484 1.0000 120 chr3R:10595935-10596055 1.0000 120 chr3R:26969905-26970025 1.0000 120 chr3R:7217030-7217150 1.0000 120 chrX:8037495-8037615 1.0000 120 chr3R:11811676-11811796 1.0000 120 chr3L:16137441-16137561 1.0000 120 chr2L:6367550-6367670 1.0000 120 chr2R:21069349-21069469 1.0000 120 chr2L:14501455-14501575 1.0000 120 chr2L:13844028-13844148 1.0000 120 chr2L:8993756-8993876 1.0000 120 chr3L:4477309-4477429 1.0000 120 chr2R:9129977-9130097 1.0000 120 chr3L:21383555-21383675 1.0000 120 chr3L:15530096-15530216 1.0000 120 chr3L:20223749-20223869 1.0000 120 chr3R:25906700-25906820 1.0000 120 chr2R:6202374-6202494 1.0000 120 chr3R:10870629-10870749 1.0000 120 chr3L:8708960-8709080 1.0000 120 chr2L:8674520-8674640 1.0000 120 chrX:11424665-11424785 1.0000 120 chr2L:9949838-9949958 1.0000 120 chr2R:14843043-14843163 1.0000 120 chrX:16692513-16692633 1.0000 120 chr2L:14532957-14533077 1.0000 120 chr2L:20904451-20904571 1.0000 120 chr2L:21367463-21367583 1.0000 120 chr3R:24137633-24137753 1.0000 120 chr3R:25756257-25756377 1.0000 120 chrX:2546828-2546948 1.0000 120 chr3R:7522466-7522586 1.0000 120 chr3R:30923734-30923854 1.0000 120 chrX:3298044-3298164 1.0000 120 chr2R:6173406-6173526 1.0000 120 chr2L:14529785-14529905 1.0000 120 chr3L:19156322-19156442 1.0000 120 chr3R:19390046-19390166 1.0000 120 chrX:18493000-18493120 1.0000 120 chr2L:20910811-20910931 1.0000 120 chr2R:6682499-6682619 1.0000 120 chr3L:12884757-12884877 1.0000 120 chr2R:11425245-11425365 1.0000 120 chrX:5715784-5715904 1.0000 120 chr2R:15326481-15326601 1.0000 120 chr3L:2458611-2458731 1.0000 120 chr2L:7242533-7242653 1.0000 120 chr3R:21180188-21180308 1.0000 120 chr3L:19648719-19648839 1.0000 120 chr2L:4899719-4899839 1.0000 120 chrX:14784311-14784431 1.0000 120 chr3L:7398141-7398261 1.0000 120 chrX:11342922-11343042 1.0000 120 chr2L:2243172-2243292 1.0000 120 chr3L:14616741-14616861 1.0000 120 chr2L:13435168-13435288 1.0000 120 chr2R:17598560-17598680 1.0000 120 chr3L:9339049-9339169 1.0000 120 chr3L:7940732-7940852 1.0000 120 chrX:16836560-16836680 1.0000 120 chr2L:1114435-1114555 1.0000 120 chr2L:8255515-8255635 1.0000 120 chr3R:10612030-10612150 1.0000 120 chr2L:14488970-14489090 1.0000 120 chr3L:15532056-15532176 1.0000 120 chrX:8685616-8685736 1.0000 120 chr2L:1631601-1631721 1.0000 120 chr2L:10305850-10305970 1.0000 120 chr2R:16009135-16009255 1.0000 120 chr2L:14540847-14540967 1.0000 120 chr2R:9561485-9561605 1.0000 120 chrX:10484365-10484485 1.0000 120 chr2L:16910262-16910382 1.0000 120 chr2L:12469039-12469159 1.0000 120 chr2R:22078282-22078402 1.0000 120 chr2L:8987652-8987772 1.0000 120 chr3R:20605919-20606039 1.0000 120 chr2L:5025655-5025775 1.0000 120 chr3R:16310122-16310242 1.0000 120 chr3R:12411559-12411679 1.0000 120 chr3L:10089660-10089780 1.0000 120 chr3L:8448275-8448395 1.0000 120 chr3R:20547377-20547497 1.0000 120 chr3L:1305412-1305532 1.0000 120 chr2L:5198763-5198883 1.0000 120 chr3L:3306573-3306693 1.0000 120 chr2R:17756514-17756634 1.0000 120 chr3R:20307669-20307789 1.0000 120 chr3L:14558129-14558249 1.0000 120 chr2L:4475487-4475607 1.0000 120 chr3R:19835122-19835242 1.0000 120 chr2R:7532418-7532538 1.0000 120 chr2R:14493360-14493480 1.0000 120 chr3R:23181407-23181527 1.0000 120 chr3R:21245977-21246097 1.0000 120 chrX:16920824-16920944 1.0000 120 chr3R:27954658-27954778 1.0000 120 chr2L:1720102-1720222 1.0000 120 chr2L:12029770-12029890 1.0000 120 chr3L:12705009-12705129 1.0000 120 chr2L:1912591-1912711 1.0000 120 chrX:12613541-12613661 1.0000 120 chr3R:26245741-26245861 1.0000 120 chr3L:4116586-4116706 1.0000 120 chrX:6010678-6010798 1.0000 120 chr3R:19793589-19793709 1.0000 120 chr3L:20494925-20495045 1.0000 120 chr3L:11233646-11233766 1.0000 120 chrX:3365736-3365856 1.0000 120 chrX:19292339-19292459 1.0000 120 chr2L:14378172-14378292 1.0000 120 chrX:16747679-16747799 1.0000 120 chr2R:21638740-21638860 1.0000 120 chrX:2654063-2654183 1.0000 120 chr3R:20988694-20988814 1.0000 120 chr3R:7514556-7514676 1.0000 120 chrX:12013216-12013336 1.0000 120 chr3L:448750-448870 1.0000 120 chr2R:8715353-8715473 1.0000 120 chr2R:22840133-22840253 1.0000 120 chr2L:6868317-6868437 1.0000 120 chr3R:26984559-26984679 1.0000 120 chr2L:3641178-3641298 1.0000 120 chr3R:10647855-10647975 1.0000 120 chr2L:4195773-4195893 1.0000 120 chr3L:21274590-21274710 1.0000 120 chr2R:13962947-13963067 1.0000 120 chr2L:21838986-21839106 1.0000 120 chrX:3444911-3445031 1.0000 120 chr3L:11947224-11947344 1.0000 120 chr2R:8443024-8443144 1.0000 120 chr2L:14611436-14611556 1.0000 120 chr3R:22998081-22998201 1.0000 120 chr2R:16652763-16652883 1.0000 120 chr3R:12715218-12715338 1.0000 120 chr3R:23727819-23727939 1.0000 120 chr2R:17712462-17712582 1.0000 120 chrX:16934549-16934669 1.0000 120 chr2L:5147985-5148105 1.0000 120 chrX:10485028-10485148 1.0000 120 chr3L:11535051-11535171 1.0000 120 chr2R:9079275-9079395 1.0000 120 chr3R:5309406-5309526 1.0000 120 chr3R:19609860-19609980 1.0000 120 chr2L:14494956-14495076 1.0000 120 chr3L:8453557-8453677 1.0000 120 chr2R:17694314-17694434 1.0000 120 chr2L:1731064-1731184 1.0000 120 chr2R:22557011-22557131 1.0000 120 chr3L:16820080-16820200 1.0000 120 chrX:9298141-9298261 1.0000 120 chr3L:9506543-9506663 1.0000 120 chr3L:1519300-1519420 1.0000 120 chr2L:5720374-5720494 1.0000 120 chr2L:838964-839084 1.0000 120 chr2R:17400080-17400200 1.0000 120 chr2L:14232831-14232951 1.0000 120 chr3R:24865028-24865148 1.0000 120 chr3L:2237712-2237832 1.0000 120 chr3R:26105123-26105243 1.0000 120 chr3R:21141590-21141710 1.0000 120 chr3R:23189398-23189518 1.0000 120 chr2R:18526494-18526614 1.0000 120 chr2L:11841653-11841773 1.0000 120 chr2L:10147229-10147349 1.0000 120 chr3R:30913896-30914016 1.0000 120 chrX:1257148-1257268 1.0000 120 chr2R:17477392-17477512 1.0000 120 chr2L:8087337-8087457 1.0000 120 chr3L:1745502-1745622 1.0000 120 chr2L:3461844-3461964 1.0000 120 chr3R:18291760-18291880 1.0000 120 chr3R:4294820-4294940 1.0000 120 chr2R:6202573-6202693 1.0000 120 chrX:5715994-5716114 1.0000 120 chr3L:20221490-20221610 1.0000 120 chr2R:18810484-18810604 1.0000 120 chr3L:7942522-7942642 1.0000 120 chr2L:4218982-4219102 1.0000 120 chr2L:12494073-12494193 1.0000 120 chr3L:7951958-7952078 1.0000 120 chr3R:24090281-24090401 1.0000 120 chr3R:10119754-10119874 1.0000 120 chrX:16671163-16671283 1.0000 120 chr2R:7731023-7731143 1.0000 120 chr2L:137209-137329 1.0000 120 chr2R:12645282-12645402 1.0000 120 chr2L:9768871-9768991 1.0000 120 chr2R:18695842-18695962 1.0000 120 chr2L:4896816-4896936 1.0000 120 chrX:16749408-16749528 1.0000 120 chr3R:21150240-21150360 1.0000 120 chr2R:19980919-19981039 1.0000 120 chr3L:17902308-17902428 1.0000 120 chr2L:18985849-18985969 1.0000 120 chr2R:9601940-9602060 1.0000 120 chr3R:24053900-24054020 1.0000 120 chr3L:16671378-16671498 1.0000 120 chr3R:18895367-18895487 1.0000 120 chr2L:10323234-10323354 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_noc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/noc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.182 G 0.191 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.182 G 0.191 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCCATAAA MEME-1 width = 8 sites = 30 llr = 275 E-value = 3.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3a:aaa pos.-specific C 3a7::::: probability G 7::::::: matrix T ::::9::: bits 2.5 * 2.2 * 2.0 * 1.7 * *** Relative 1.5 **** *** Entropy 1.2 ******** (13.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22840133-22840253 59 1.87e-05 CCAGATTGCG GCCATAAA GAATACTATG chrX:16747679-16747799 84 1.87e-05 AATTCGGAGA GCCATAAA CAATTATCTC chrX:10484365-10484485 46 1.87e-05 AGCTTATTAA GCCATAAA CAAAGGTATG chr2R:9561485-9561605 48 1.87e-05 AACTTGGCCA GCCATAAA TGATGATTTG chrX:8685616-8685736 102 1.87e-05 CTAAGCTGTT GCCATAAA TCGATAGCTA chr2L:14488970-14489090 101 1.87e-05 TGACAAAGTG GCCATAAA AAATAACAAA chr3L:7940732-7940852 112 1.87e-05 TGATAAGGTC GCCATAAA T chrX:14784311-14784431 27 1.87e-05 AGTTCTCTAA GCCATAAA TTCCTATCTG chrX:5715784-5715904 33 1.87e-05 ATGACGAATG GCCATAAA TATGAATGCA chrX:3298044-3298164 70 1.87e-05 TCTCGCTTTA GCCATAAA TCATGCTGAA chr2L:9949838-9949958 89 1.87e-05 CAGTTTTGGT GCCATAAA TCTTCGTAGC chr3R:9620250-9620370 88 1.87e-05 TTTATAGTTG GCCATAAA AATCAGAACC chr3R:13900578-13900698 26 1.87e-05 TTAATTAGCG GCCATAAA AATTTGATAG chr2R:12642575-12642695 68 1.87e-05 AAATCCAAAT GCCATAAA TCTGCTAACT chr3R:30913896-30914016 32 3.65e-05 CCAGAGCAAG CCCATAAA CGGCTTGTTG chr3R:5309406-5309526 45 3.65e-05 TTGGTCAGAC CCCATAAA TCGTTCGATT chrX:12013216-12013336 59 3.65e-05 ATCAATAATG CCCATAAA TCTTACAGCA chr2L:16910262-16910382 1 3.65e-05 . CCCATAAA TACATAAATA chr3L:19174443-19174563 76 3.65e-05 AATCTCATTT CCCATAAA TAATCACGAT chr3L:21274590-21274710 62 6.85e-05 GAATTAGCCG GCAATAAA GCGTCTATTA chr3L:9339049-9339169 25 6.85e-05 AACTTTAACT GCAATAAA ATAATACATT chr3R:25906700-25906820 32 6.85e-05 ATCGCGCCAG GCAATAAA GCCACCGACG chr3L:20223749-20223869 99 6.85e-05 CATAAGAGAG GCAATAAA GCGCTGGTAT chr2R:8443024-8443144 21 9.89e-05 AGATTTGGGG CCAATAAA CGATTGTTAG chr3R:12411559-12411679 47 9.89e-05 ACAATGTCGA CCAATAAA TAACGCGAAA chr3R:10595935-10596055 46 9.89e-05 TTTTATGATG CCAATAAA TGCAATTATA chr2L:14496464-14496584 85 9.89e-05 TGTATGAAAA CCAATAAA GTTCCCTTGC chr3R:24029364-24029484 4 1.10e-04 AAT GCCACAAA ACAAACGGGT chr2L:21838986-21839106 82 1.32e-04 TCATGTCTGT GCCGTAAA TCCGCATGCG chr2L:20910811-20910931 78 1.32e-04 TTTTGATTTT GCCAGAAA TAAGCTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22840133-22840253 1.9e-05 58_[+1]_54 chrX:16747679-16747799 1.9e-05 83_[+1]_29 chrX:10484365-10484485 1.9e-05 45_[+1]_67 chr2R:9561485-9561605 1.9e-05 47_[+1]_65 chrX:8685616-8685736 1.9e-05 101_[+1]_11 chr2L:14488970-14489090 1.9e-05 100_[+1]_12 chr3L:7940732-7940852 1.9e-05 111_[+1]_1 chrX:14784311-14784431 1.9e-05 26_[+1]_86 chrX:5715784-5715904 1.9e-05 32_[+1]_80 chrX:3298044-3298164 1.9e-05 69_[+1]_43 chr2L:9949838-9949958 1.9e-05 88_[+1]_24 chr3R:9620250-9620370 1.9e-05 87_[+1]_25 chr3R:13900578-13900698 1.9e-05 25_[+1]_87 chr2R:12642575-12642695 1.9e-05 67_[+1]_45 chr3R:30913896-30914016 3.7e-05 31_[+1]_81 chr3R:5309406-5309526 3.7e-05 44_[+1]_68 chrX:12013216-12013336 3.7e-05 58_[+1]_54 chr2L:16910262-16910382 3.7e-05 [+1]_112 chr3L:19174443-19174563 3.7e-05 75_[+1]_37 chr3L:21274590-21274710 6.8e-05 61_[+1]_51 chr3L:9339049-9339169 6.8e-05 24_[+1]_88 chr3R:25906700-25906820 6.8e-05 31_[+1]_81 chr3L:20223749-20223869 6.8e-05 98_[+1]_14 chr2R:8443024-8443144 9.9e-05 20_[+1]_92 chr3R:12411559-12411679 9.9e-05 46_[+1]_66 chr3R:10595935-10596055 9.9e-05 45_[+1]_67 chr2L:14496464-14496584 9.9e-05 84_[+1]_28 chr3R:24029364-24029484 0.00011 3_[+1]_109 chr2L:21838986-21839106 0.00013 81_[+1]_31 chr2L:20910811-20910931 0.00013 77_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATAAA width=8 seqs=30 chr2R:22840133-22840253 ( 59) GCCATAAA 1 chrX:16747679-16747799 ( 84) GCCATAAA 1 chrX:10484365-10484485 ( 46) GCCATAAA 1 chr2R:9561485-9561605 ( 48) GCCATAAA 1 chrX:8685616-8685736 ( 102) GCCATAAA 1 chr2L:14488970-14489090 ( 101) GCCATAAA 1 chr3L:7940732-7940852 ( 112) GCCATAAA 1 chrX:14784311-14784431 ( 27) GCCATAAA 1 chrX:5715784-5715904 ( 33) GCCATAAA 1 chrX:3298044-3298164 ( 70) GCCATAAA 1 chr2L:9949838-9949958 ( 89) GCCATAAA 1 chr3R:9620250-9620370 ( 88) GCCATAAA 1 chr3R:13900578-13900698 ( 26) GCCATAAA 1 chr2R:12642575-12642695 ( 68) GCCATAAA 1 chr3R:30913896-30914016 ( 32) CCCATAAA 1 chr3R:5309406-5309526 ( 45) CCCATAAA 1 chrX:12013216-12013336 ( 59) CCCATAAA 1 chr2L:16910262-16910382 ( 1) CCCATAAA 1 chr3L:19174443-19174563 ( 76) CCCATAAA 1 chr3L:21274590-21274710 ( 62) GCAATAAA 1 chr3L:9339049-9339169 ( 25) GCAATAAA 1 chr3R:25906700-25906820 ( 32) GCAATAAA 1 chr3L:20223749-20223869 ( 99) GCAATAAA 1 chr2R:8443024-8443144 ( 21) CCAATAAA 1 chr3R:12411559-12411679 ( 47) CCAATAAA 1 chr3R:10595935-10596055 ( 46) CCAATAAA 1 chr2L:14496464-14496584 ( 85) CCAATAAA 1 chr3R:24029364-24029484 ( 4) GCCACAAA 1 chr2L:21838986-21839106 ( 82) GCCGTAAA 1 chr2L:20910811-20910931 ( 78) GCCAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5523 E= 3.1e-004 -1155 72 187 -1155 -1155 246 -1155 -1155 -22 201 -1155 -1155 164 -1155 -252 -1155 -1155 -245 -252 156 168 -1155 -1155 -1155 168 -1155 -1155 -1155 168 -1155 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.1e-004 0.000000 0.300000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.733333 0.000000 0.000000 0.966667 0.000000 0.033333 0.000000 0.000000 0.033333 0.033333 0.933333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-1 regular expression -------------------------------------------------------------------------------- [GC]C[CA]ATAAA -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTMTGGC MEME-2 width = 8 sites = 25 llr = 228 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C :::32::a probability G ::32:aa: matrix T aa7:8::: bits 2.5 *** 2.2 *** 2.0 *** 1.7 ** *** Relative 1.5 ** *** Entropy 1.2 ** *** (13.2 bits) 1.0 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATGGC consensus GCC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8087337-8087457 43 3.26e-05 GTTTACGTGT TTTATGGC TTTTATTTTG chrX:1257148-1257268 77 3.26e-05 TTTATTGTTA TTTATGGC CACTCTTGGC chr3R:24865028-24865148 97 3.26e-05 TTTGTTCAAA TTTATGGC TAGTATCTAT chr3R:23727819-23727939 13 3.26e-05 GACAAAGATC TTTATGGC CCATGATTGG chr2R:22840133-22840253 101 3.26e-05 AACTCATTCA TTTATGGC GGCTCTTTCG chrX:6010678-6010798 100 3.26e-05 TAGAAACTTA TTTATGGC CCAGCCATTG chr3L:15532056-15532176 45 3.26e-05 TAATCACAAT TTTCTGGC ATAACGCTAA chrX:18493000-18493120 7 3.26e-05 CCCAGA TTTATGGC AATGGCTATC chr2L:14501455-14501575 105 3.26e-05 AAAATGAAAA TTTATGGC CCTAATGT chrX:11723321-11723441 79 3.26e-05 TACGAGTGCG TTTATGGC CCGGGATCAA chr3R:22684807-22684927 46 3.26e-05 GCTGGATTTA TTTATGGC CGGTGGTCGC chr2R:18526494-18526614 79 5.24e-05 TGTATTTGGT TTGCTGGC CACTGGTCAA chr3R:5309406-5309526 5 5.24e-05 AAAG TTGCTGGC CAGCCGAACC chr3L:8448275-8448395 48 5.24e-05 CATACGCTGC TTGCTGGC CACAATTCAT chr3R:15136991-15137111 59 5.24e-05 GAAAGCATAA TTGCTGGC GCTGCGATAA chr2L:1631601-1631721 62 6.50e-05 TGCCTTTTTT TTTGTGGC GCTACTTCGG chr2L:14497031-14497151 37 6.50e-05 AGGTGGATTA TTTGTGGC CCTATACAAT chr3R:30913896-30914016 64 8.38e-05 ACGAATTAAG TTTACGGC GGACTCTCAC chrX:16920824-16920944 77 8.38e-05 TGCAGTTATC TTTACGGC CGCCGCCAAA chr2L:7242533-7242653 102 8.38e-05 TGTTGACACC TTTCCGGC AAGATTTTTA chr3L:20223537-20223657 14 8.38e-05 GGTTGTCATA TTTACGGC ACAATAACTG chr2L:11841653-11841773 37 9.15e-05 TTCGTAATCT TTGGTGGC GAAAGCCACT chr2L:14540847-14540967 107 9.15e-05 TCCGGGGGGG TTGGTGGC CAACCC chr3R:10119754-10119874 83 1.03e-04 ATTTCGCTTA TTGCCGGC CACACTTCAT chr3R:7217030-7217150 50 1.15e-04 AATCAACCAC TTGGCGGC TCGTGTGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8087337-8087457 3.3e-05 42_[+2]_70 chrX:1257148-1257268 3.3e-05 76_[+2]_36 chr3R:24865028-24865148 3.3e-05 96_[+2]_16 chr3R:23727819-23727939 3.3e-05 12_[+2]_100 chr2R:22840133-22840253 3.3e-05 100_[+2]_12 chrX:6010678-6010798 3.3e-05 99_[+2]_13 chr3L:15532056-15532176 3.3e-05 44_[+2]_68 chrX:18493000-18493120 3.3e-05 6_[+2]_106 chr2L:14501455-14501575 3.3e-05 104_[+2]_8 chrX:11723321-11723441 3.3e-05 78_[+2]_34 chr3R:22684807-22684927 3.3e-05 45_[+2]_67 chr2R:18526494-18526614 5.2e-05 78_[+2]_34 chr3R:5309406-5309526 5.2e-05 4_[+2]_108 chr3L:8448275-8448395 5.2e-05 47_[+2]_65 chr3R:15136991-15137111 5.2e-05 58_[+2]_54 chr2L:1631601-1631721 6.5e-05 61_[+2]_51 chr2L:14497031-14497151 6.5e-05 36_[+2]_76 chr3R:30913896-30914016 8.4e-05 63_[+2]_49 chrX:16920824-16920944 8.4e-05 76_[+2]_36 chr2L:7242533-7242653 8.4e-05 101_[+2]_11 chr3L:20223537-20223657 8.4e-05 13_[+2]_99 chr2L:11841653-11841773 9.1e-05 36_[+2]_76 chr2L:14540847-14540967 9.1e-05 106_[+2]_6 chr3R:10119754-10119874 0.0001 82_[+2]_30 chr3R:7217030-7217150 0.00011 49_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTMTGGC width=8 seqs=25 chr2L:8087337-8087457 ( 43) TTTATGGC 1 chrX:1257148-1257268 ( 77) TTTATGGC 1 chr3R:24865028-24865148 ( 97) TTTATGGC 1 chr3R:23727819-23727939 ( 13) TTTATGGC 1 chr2R:22840133-22840253 ( 101) TTTATGGC 1 chrX:6010678-6010798 ( 100) TTTATGGC 1 chr3L:15532056-15532176 ( 45) TTTCTGGC 1 chrX:18493000-18493120 ( 7) TTTATGGC 1 chr2L:14501455-14501575 ( 105) TTTATGGC 1 chrX:11723321-11723441 ( 79) TTTATGGC 1 chr3R:22684807-22684927 ( 46) TTTATGGC 1 chr2R:18526494-18526614 ( 79) TTGCTGGC 1 chr3R:5309406-5309526 ( 5) TTGCTGGC 1 chr3L:8448275-8448395 ( 48) TTGCTGGC 1 chr3R:15136991-15137111 ( 59) TTGCTGGC 1 chr2L:1631601-1631721 ( 62) TTTGTGGC 1 chr2L:14497031-14497151 ( 37) TTTGTGGC 1 chr3R:30913896-30914016 ( 64) TTTACGGC 1 chrX:16920824-16920944 ( 77) TTTACGGC 1 chr2L:7242533-7242653 ( 102) TTTCCGGC 1 chr3L:20223537-20223657 ( 14) TTTACGGC 1 chr2L:11841653-11841773 ( 37) TTGGTGGC 1 chr2L:14540847-14540967 ( 107) TTGGTGGC 1 chr3R:10119754-10119874 ( 83) TTGCCGGC 1 chr3R:7217030-7217150 ( 50) TTGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.97059 E= 2.1e+002 -1129 -1129 -1129 166 -1129 -1129 -1129 166 -1129 -1129 74 111 74 62 6 -1129 -1129 40 -1129 127 -1129 -1129 239 -1129 -1129 -1129 239 -1129 -1129 246 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.1e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.320000 0.680000 0.520000 0.280000 0.200000 0.000000 0.000000 0.240000 0.000000 0.760000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTMTGGC MEME-2 regular expression -------------------------------------------------------------------------------- TT[TG][ACG][TC]GGC -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCRS MEME-3 width = 8 sites = 35 llr = 312 E-value = 3.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2a::5: pos.-specific C a::::a:5 probability G ::::::45 matrix T :a8:a:1: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** *** Relative 1.5 ** *** * Entropy 1.2 ** *** * (12.9 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCAG consensus A GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16934549-16934669 25 1.19e-05 CAGCGGCAAT CTTATCGG ATCGTAAAGA chr3R:21180188-21180308 4 1.19e-05 AGG CTTATCGG CGGCAAGAAC chr2R:21836764-21836884 45 1.19e-05 TTATCTAGAA CTTATCGG TTCGGATCGG chr2R:12645282-12645402 97 4.25e-05 TGATAACCAC CTTATCGC Gaccgaacca chr2R:18810484-18810604 32 4.25e-05 TTTATCATCC CTTATCAG CCAGACAAGC chr2R:6202573-6202693 55 4.25e-05 CCGCCTCTGA CTTATCGC TCAAGCCAAG chr2L:3461844-3461964 34 4.25e-05 GGAGCTTCTG CTTATCAG TTGGAAAATG chr3R:21141590-21141710 22 4.25e-05 CACACTCCCA CTTATCAG CGTGTCGTCA chr2L:5147985-5148105 110 4.25e-05 ATTTGTAGTA CTTATCAG CAA chr2R:13962947-13963067 109 4.25e-05 TCGTCTAATT CTTATCGC CAAC chr2R:22840133-22840253 22 4.25e-05 GGTAGCATCG CTTATCAG TTGCGTTCCA chr2R:22078282-22078402 109 4.25e-05 GATCCCCCCT CTTATCAG TTAG chr3L:9339049-9339169 62 4.25e-05 ACTCAACAAG CTTATCAG TAAGTCAGGA chr2L:7242533-7242653 21 4.25e-05 GGCAACACAC CTTATCGC CAGTCAATAT chr3L:19156322-19156442 66 4.25e-05 AAATCGCGGG CTTATCAG CGTTTTTTGT chr3R:24137633-24137753 57 4.25e-05 ATTCGCTGAC CTTATCAG TTGGAGCTGA chr2R:6202374-6202494 63 4.25e-05 ATAATAACGC CTTATCGC GGTTCAGGGA chrX:8037495-8037615 84 4.25e-05 AGATAACCTT CTTATCGC ACGATTTGTG chr2R:23845939-23846059 58 4.25e-05 TAAGCGGAAG CTTATCAG CGGGTTGATC chr3L:17902308-17902428 2 6.09e-05 T CTTATCAC CATTGATACT chr3R:23189398-23189518 12 6.09e-05 GAGGATCGCC CTTATCAC AAGACACGTC chr3L:11233646-11233766 105 6.09e-05 GCCAAATACG CTTATCAC ATAGATAA chr3R:25756257-25756377 4 6.09e-05 GCC CTTATCAC ATGGTCATAT chr2L:7080454-7080574 62 6.09e-05 TAAATTAGTT CTTATCAC ACAGTAAGTT chr3R:4294820-4294940 15 7.25e-05 TAGATCCCAA CTAATCGG TTTCCCATTT chrX:6010678-6010798 54 1.03e-04 TTGACTTTAT CTAATCGC CGAGATTTAA chr3R:19390046-19390166 86 1.03e-04 ATGCGAACAT CTAATCGC AACTTAGGAA chr2L:14496464-14496584 21 1.03e-04 GAAATTAAGT CTAATCAG TGGTTGTGAT chr2R:8084261-8084381 7 1.03e-04 TGCGAC CTAATCGC ATATGATCCC chr2L:12494073-12494193 15 1.21e-04 ATGCAACGTG CTAATCAC TTGCTTACTA chr3L:15532056-15532176 34 1.21e-04 GCGAAGGAAT CTAATCAC AATTTTCTGG chr3L:8453557-8453677 7 1.40e-04 GTGCTG CTTATCTG ATTGAAAAGT chr2L:6868317-6868437 65 1.40e-04 ATATTCGCGG CTTATCTG ACAATCGACG chr2R:14493360-14493480 56 1.40e-04 TACCACTTAT CTTATCTG CTCCTCAATC chr2R:17756514-17756634 65 1.40e-04 CAGCACGTTT CTTATCTG GGTTCGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16934549-16934669 1.2e-05 24_[+3]_88 chr3R:21180188-21180308 1.2e-05 3_[+3]_109 chr2R:21836764-21836884 1.2e-05 44_[+3]_68 chr2R:12645282-12645402 4.2e-05 96_[+3]_16 chr2R:18810484-18810604 4.2e-05 31_[+3]_81 chr2R:6202573-6202693 4.2e-05 54_[+3]_58 chr2L:3461844-3461964 4.2e-05 33_[+3]_79 chr3R:21141590-21141710 4.2e-05 21_[+3]_91 chr2L:5147985-5148105 4.2e-05 109_[+3]_3 chr2R:13962947-13963067 4.2e-05 108_[+3]_4 chr2R:22840133-22840253 4.2e-05 21_[+3]_91 chr2R:22078282-22078402 4.2e-05 108_[+3]_4 chr3L:9339049-9339169 4.2e-05 61_[+3]_51 chr2L:7242533-7242653 4.2e-05 20_[+3]_92 chr3L:19156322-19156442 4.2e-05 65_[+3]_47 chr3R:24137633-24137753 4.2e-05 56_[+3]_56 chr2R:6202374-6202494 4.2e-05 62_[+3]_50 chrX:8037495-8037615 4.2e-05 83_[+3]_29 chr2R:23845939-23846059 4.2e-05 57_[+3]_55 chr3L:17902308-17902428 6.1e-05 1_[+3]_111 chr3R:23189398-23189518 6.1e-05 11_[+3]_101 chr3L:11233646-11233766 6.1e-05 104_[+3]_8 chr3R:25756257-25756377 6.1e-05 3_[+3]_109 chr2L:7080454-7080574 6.1e-05 61_[+3]_51 chr3R:4294820-4294940 7.3e-05 14_[+3]_98 chrX:6010678-6010798 0.0001 53_[+3]_59 chr3R:19390046-19390166 0.0001 85_[+3]_27 chr2L:14496464-14496584 0.0001 20_[+3]_92 chr2R:8084261-8084381 0.0001 6_[+3]_106 chr2L:12494073-12494193 0.00012 14_[+3]_98 chr3L:15532056-15532176 0.00012 33_[+3]_79 chr3L:8453557-8453677 0.00014 6_[+3]_106 chr2L:6868317-6868437 0.00014 64_[+3]_48 chr2R:14493360-14493480 0.00014 55_[+3]_57 chr2R:17756514-17756634 0.00014 64_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCRS width=8 seqs=35 chrX:16934549-16934669 ( 25) CTTATCGG 1 chr3R:21180188-21180308 ( 4) CTTATCGG 1 chr2R:21836764-21836884 ( 45) CTTATCGG 1 chr2R:12645282-12645402 ( 97) CTTATCGC 1 chr2R:18810484-18810604 ( 32) CTTATCAG 1 chr2R:6202573-6202693 ( 55) CTTATCGC 1 chr2L:3461844-3461964 ( 34) CTTATCAG 1 chr3R:21141590-21141710 ( 22) CTTATCAG 1 chr2L:5147985-5148105 ( 110) CTTATCAG 1 chr2R:13962947-13963067 ( 109) CTTATCGC 1 chr2R:22840133-22840253 ( 22) CTTATCAG 1 chr2R:22078282-22078402 ( 109) CTTATCAG 1 chr3L:9339049-9339169 ( 62) CTTATCAG 1 chr2L:7242533-7242653 ( 21) CTTATCGC 1 chr3L:19156322-19156442 ( 66) CTTATCAG 1 chr3R:24137633-24137753 ( 57) CTTATCAG 1 chr2R:6202374-6202494 ( 63) CTTATCGC 1 chrX:8037495-8037615 ( 84) CTTATCGC 1 chr2R:23845939-23846059 ( 58) CTTATCAG 1 chr3L:17902308-17902428 ( 2) CTTATCAC 1 chr3R:23189398-23189518 ( 12) CTTATCAC 1 chr3L:11233646-11233766 ( 105) CTTATCAC 1 chr3R:25756257-25756377 ( 4) CTTATCAC 1 chr2L:7080454-7080574 ( 62) CTTATCAC 1 chr3R:4294820-4294940 ( 15) CTAATCGG 1 chrX:6010678-6010798 ( 54) CTAATCGC 1 chr3R:19390046-19390166 ( 86) CTAATCGC 1 chr2L:14496464-14496584 ( 21) CTAATCAG 1 chr2R:8084261-8084381 ( 7) CTAATCGC 1 chr2L:12494073-12494193 ( 15) CTAATCAC 1 chr3L:15532056-15532176 ( 34) CTAATCAC 1 chr3L:8453557-8453677 ( 7) CTTATCTG 1 chr2L:6868317-6868437 ( 65) CTTATCTG 1 chr2R:14493360-14493480 ( 56) CTTATCTG 1 chr2R:17756514-17756634 ( 65) CTTATCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 3.1e-004 -1177 246 -1177 -1177 -1177 -1177 -1177 166 -64 -1177 -1177 134 168 -1177 -1177 -1177 -1177 -1177 -1177 166 -1177 246 -1177 -1177 73 -1177 96 -147 -1177 133 151 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 3.1e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.514286 0.000000 0.371429 0.114286 0.000000 0.457143 0.542857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCRS MEME-3 regular expression -------------------------------------------------------------------------------- CT[TA]ATC[AG][GC] -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCMCC MEME-4 width = 8 sites = 14 llr = 142 E-value = 7.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::41: pos.-specific C :9:aa668 probability G 9:a:::3: matrix T 1::::1:2 bits 2.5 *** 2.2 *** 2.0 * *** 1.7 ***** Relative 1.5 ***** * Entropy 1.2 ***** ** (14.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCCCC consensus AGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6202573-6202693 11 1.33e-06 TTGTCTCTCT GCGCCCCC ACCCCTCAGA chr2L:9949838-9949958 105 2.72e-06 AATCTTCGTA GCGCCCGC ATCCCGAC chrX:11723321-11723441 40 2.72e-06 ATGTTTTACA GCGCCCGC TTAGGCTTTT chr3R:24053900-24054020 24 4.98e-06 TCTATGCCTT GCGCCACC CAGTGTTTAC chr3R:12715218-12715338 100 7.28e-06 TCCCAGGCAC GCGCCCCT ATTCATATAG chr2R:13962947-13963067 87 7.28e-06 TTAATTGAAT GCGCCCCT AGTGTCGTCT chr2L:3461844-3461964 61 9.66e-06 GGAAGAAAAC GCGCCAGC CTCCGTTCTC chr3L:7398141-7398261 11 9.66e-06 GCGTCGAGTT GCGCCAGC TCTGATTTGC chr2L:4896816-4896936 113 1.19e-05 ACTTGGCGAC GAGCCCCC chr3R:21141590-21141710 113 1.89e-05 GCGAAATTAA GCGCCTCC chr2L:1114435-1114555 54 1.89e-05 GCAGGTGATG GCGCCCAC CTGGCAACCG chr3L:19174443-19174563 55 2.28e-05 gacAATTAAT GCGCCACT ACAAATCTCA chr2R:16652763-16652883 45 2.50e-05 CACCAGATGG TCGCCCCC AGATTGGGGG chr2L:14498572-14498692 49 3.13e-05 TGCACCCAGC GAGCCACC CAAAAGGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6202573-6202693 1.3e-06 10_[+4]_102 chr2L:9949838-9949958 2.7e-06 104_[+4]_8 chrX:11723321-11723441 2.7e-06 39_[+4]_73 chr3R:24053900-24054020 5e-06 23_[+4]_89 chr3R:12715218-12715338 7.3e-06 99_[+4]_13 chr2R:13962947-13963067 7.3e-06 86_[+4]_26 chr2L:3461844-3461964 9.7e-06 60_[+4]_52 chr3L:7398141-7398261 9.7e-06 10_[+4]_102 chr2L:4896816-4896936 1.2e-05 112_[+4] chr3R:21141590-21141710 1.9e-05 112_[+4] chr2L:1114435-1114555 1.9e-05 53_[+4]_59 chr3L:19174443-19174563 2.3e-05 54_[+4]_58 chr2R:16652763-16652883 2.5e-05 44_[+4]_68 chr2L:14498572-14498692 3.1e-05 48_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCMCC width=8 seqs=14 chr2R:6202573-6202693 ( 11) GCGCCCCC 1 chr2L:9949838-9949958 ( 105) GCGCCCGC 1 chrX:11723321-11723441 ( 40) GCGCCCGC 1 chr3R:24053900-24054020 ( 24) GCGCCACC 1 chr3R:12715218-12715338 ( 100) GCGCCCCT 1 chr2R:13962947-13963067 ( 87) GCGCCCCT 1 chr2L:3461844-3461964 ( 61) GCGCCAGC 1 chr3L:7398141-7398261 ( 11) GCGCCAGC 1 chr2L:4896816-4896936 ( 113) GAGCCCCC 1 chr3R:21141590-21141710 ( 113) GCGCCTCC 1 chr2L:1114435-1114555 ( 54) GCGCCCAC 1 chr3L:19174443-19174563 ( 55) GCGCCACT 1 chr2R:16652763-16652883 ( 45) TCGCCCCC 1 chr2L:14498572-14498692 ( 49) GAGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 7.0e+002 -1045 -1045 228 -214 -112 223 -1045 -1045 -1045 -1045 239 -1045 -1045 246 -1045 -1045 -1045 246 -1045 -1045 20 165 -1045 -214 -212 182 58 -1045 -1045 211 -1045 -56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.0e+002 0.000000 0.000000 0.928571 0.071429 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.357143 0.571429 0.000000 0.071429 0.071429 0.642857 0.285714 0.000000 0.000000 0.785714 0.000000 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCMCC MEME-4 regular expression -------------------------------------------------------------------------------- GCGCC[CA][CG][CT] -------------------------------------------------------------------------------- Time 26.23 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCGCWGC MEME-5 width = 8 sites = 13 llr = 134 E-value = 8.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5::::5:: pos.-specific C 2:a:a::a probability G :::a::a: matrix T 2a:::5:: bits 2.5 *** ** 2.2 *** ** 2.0 *** ** 1.7 **** ** Relative 1.5 **** ** Entropy 1.2 **** ** (14.9 bits) 1.0 **** ** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCGCAGC consensus C T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7951958-7952078 65 6.72e-06 GATAATGCCT ATCGCAGC AAATAAATCA chr2L:6868317-6868437 22 6.72e-06 ATGATGATTG ATCGCAGC ATGTAGAACA chr2R:12642575-12642695 18 6.72e-06 AATCTAAATG ATCGCAGC TAAGCACTTG chr3L:7942522-7942642 85 1.36e-05 TATAAATTAA ATCGCTGC CCCGTCAGCG chr2R:6202573-6202693 110 1.36e-05 CCTGATAGAC ATCGCTGC TCT chrX:1257148-1257268 33 1.36e-05 AGGTGACATT ATCGCTGC TGCTCGCCGT chr3R:22998081-22998201 88 1.36e-05 GCTTACCGGA ATCGCTGC TCATGTCGAA chr3R:23189398-23189518 38 1.75e-05 TCTTGAGTCA CTCGCAGC TTCGATTATT chr2R:13962947-13963067 22 1.75e-05 CATCCTTTGT CTCGCAGC CTTCACTTGC chr3L:12705009-12705129 29 2.15e-05 AAAATATATA CTCGCTGC TGTCTTAATG chr2R:14493360-14493480 13 2.83e-05 TAATTACGCC TTCGCAGC AGATATAATC chr2R:11783883-11784003 50 2.83e-05 GGCAAGGAAT TTCGCAGC GATTTATTTA chr2R:11425245-11425365 29 3.53e-05 TCATCTTCAA TTCGCTGC CAAGTACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7951958-7952078 6.7e-06 64_[+5]_48 chr2L:6868317-6868437 6.7e-06 21_[+5]_91 chr2R:12642575-12642695 6.7e-06 17_[+5]_95 chr3L:7942522-7942642 1.4e-05 84_[+5]_28 chr2R:6202573-6202693 1.4e-05 109_[+5]_3 chrX:1257148-1257268 1.4e-05 32_[+5]_80 chr3R:22998081-22998201 1.4e-05 87_[+5]_25 chr3R:23189398-23189518 1.7e-05 37_[+5]_75 chr2R:13962947-13963067 1.7e-05 21_[+5]_91 chr3L:12705009-12705129 2.1e-05 28_[+5]_84 chr2R:14493360-14493480 2.8e-05 12_[+5]_100 chr2R:11783883-11784003 2.8e-05 49_[+5]_63 chr2R:11425245-11425365 3.5e-05 28_[+5]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCGCWGC width=8 seqs=13 chr3L:7951958-7952078 ( 65) ATCGCAGC 1 chr2L:6868317-6868437 ( 22) ATCGCAGC 1 chr2R:12642575-12642695 ( 18) ATCGCAGC 1 chr3L:7942522-7942642 ( 85) ATCGCTGC 1 chr2R:6202573-6202693 ( 110) ATCGCTGC 1 chrX:1257148-1257268 ( 33) ATCGCTGC 1 chr3R:22998081-22998201 ( 88) ATCGCTGC 1 chr3R:23189398-23189518 ( 38) CTCGCAGC 1 chr2R:13962947-13963067 ( 22) CTCGCAGC 1 chr3L:12705009-12705129 ( 29) CTCGCTGC 1 chr2R:14493360-14493480 ( 13) TTCGCAGC 1 chr2R:11783883-11784003 ( 50) TTCGCAGC 1 chr2R:11425245-11425365 ( 29) TTCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 8.6e+002 79 34 -1035 -45 -1035 -1035 -1035 166 -1035 246 -1035 -1035 -1035 -1035 239 -1035 -1035 246 -1035 -1035 79 -1035 -1035 55 -1035 -1035 239 -1035 -1035 246 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 8.6e+002 0.538462 0.230769 0.000000 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.538462 0.000000 0.000000 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGCWGC MEME-5 regular expression -------------------------------------------------------------------------------- [ACT]TCGC[AT]GC -------------------------------------------------------------------------------- Time 32.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14497031-14497151 6.22e-02 36_[+2(6.50e-05)]_76 chr3L:19174443-19174563 7.03e-04 54_[+4(2.28e-05)]_13_[+1(3.65e-05)]_\ 37 chr3R:25720314-25720434 6.71e-01 120 chr2L:14504497-14504617 4.32e-01 120 chr2R:12642575-12642695 4.74e-04 17_[+5(6.72e-06)]_42_[+1(1.87e-05)]_\ 45 chr2L:14498572-14498692 2.15e-02 48_[+4(3.13e-05)]_64 chr3R:13900578-13900698 1.58e-03 25_[+1(1.87e-05)]_87 chr2L:14506153-14506273 2.28e-01 120 chr3R:29924705-29924825 3.25e-02 120 chr2R:23845939-23846059 8.33e-05 57_[+3(4.25e-05)]_55 chr3R:27002941-27003061 7.17e-02 120 chr2R:21472984-21473104 2.39e-01 120 chr2R:19362920-19363040 2.55e-01 120 chr3R:22684807-22684927 1.12e-01 45_[+2(3.26e-05)]_67 chr2R:8721797-8721917 3.79e-01 120 chr2R:17054186-17054306 1.63e-01 120 chr2L:21084406-21084526 6.80e-01 120 chr3R:21753236-21753356 6.84e-01 120 chr2L:14534360-14534480 6.54e-02 120 chrX:12777297-12777417 1.57e-01 120 chr2R:21836764-21836884 6.20e-03 44_[+3(1.19e-05)]_68 chr2R:8084261-8084381 4.15e-03 120 chr2R:11342787-11342907 6.27e-01 120 chr3L:9640616-9640736 4.75e-02 64_[+5(9.39e-05)]_48 chr3R:5303567-5303687 6.76e-01 120 chr2L:7080454-7080574 8.36e-02 61_[+3(6.09e-05)]_51 chr2L:14496464-14496584 1.10e-02 84_[+1(9.89e-05)]_28 chr2R:21080314-21080434 2.09e-01 120 chrX:8108376-8108496 2.07e-01 120 chr2R:11783883-11784003 1.56e-02 49_[+5(2.83e-05)]_63 chr3R:29565894-29566014 1.78e-01 120 chr2R:18618203-18618323 2.62e-01 120 chr2L:14505560-14505680 1.93e-01 120 chr2L:3766361-3766481 8.58e-01 120 chrX:11723321-11723441 8.88e-04 39_[+4(2.72e-06)]_31_[+2(3.26e-05)]_\ 34 chr3L:8394265-8394385 9.58e-02 120 chr2R:16665980-16666100 1.03e-01 120 chr3R:15136991-15137111 2.83e-03 58_[+2(5.24e-05)]_54 chr2L:5242275-5242395 2.56e-01 120 chrX:6733808-6733928 1.34e-01 120 chrX:10489693-10489813 1.00e-01 120 chr3R:17536903-17537023 8.88e-01 120 chr3L:20223537-20223657 3.35e-03 13_[+2(8.38e-05)]_99 chr3R:18474545-18474665 1.53e-01 120 chr3R:24138851-24138971 6.86e-01 120 chr2R:14226962-14227082 3.43e-01 120 chr2R:15220716-15220836 6.64e-01 120 chr2L:2810828-2810948 1.52e-01 120 chr3R:9620250-9620370 7.44e-02 87_[+1(1.87e-05)]_25 chr3R:24029364-24029484 2.11e-02 120 chr3R:10595935-10596055 1.29e-03 45_[+1(9.89e-05)]_67 chr3R:26969905-26970025 9.50e-01 120 chr3R:7217030-7217150 6.25e-02 120 chrX:8037495-8037615 6.84e-06 83_[+3(4.25e-05)]_11_[+2(5.24e-05)]_\ 10 chr3R:11811676-11811796 8.17e-02 120 chr3L:16137441-16137561 1.35e-01 120 chr2L:6367550-6367670 6.44e-01 120 chr2R:21069349-21069469 3.62e-01 120 chr2L:14501455-14501575 9.95e-03 104_[+2(3.26e-05)]_8 chr2L:13844028-13844148 8.16e-01 120 chr2L:8993756-8993876 1.80e-01 120 chr3L:4477309-4477429 1.11e-01 120 chr2R:9129977-9130097 2.74e-01 120 chr3L:21383555-21383675 7.74e-01 120 chr3L:15530096-15530216 8.93e-01 120 chr3L:20223749-20223869 7.96e-02 98_[+1(6.85e-05)]_14 chr3R:25906700-25906820 3.82e-03 31_[+1(6.85e-05)]_81 chr2R:6202374-6202494 2.13e-02 62_[+3(4.25e-05)]_50 chr3R:10870629-10870749 5.57e-01 120 chr3L:8708960-8709080 3.93e-01 120 chr2L:8674520-8674640 6.46e-01 120 chrX:11424665-11424785 3.36e-01 120 chr2L:9949838-9949958 3.35e-05 88_[+1(1.87e-05)]_8_[+4(2.72e-06)]_\ 8 chr2R:14843043-14843163 6.16e-01 120 chrX:16692513-16692633 9.81e-01 120 chr2L:14532957-14533077 2.05e-01 120 chr2L:20904451-20904571 2.63e-01 120 chr2L:21367463-21367583 1.86e-01 120 chr3R:24137633-24137753 9.28e-03 56_[+3(4.25e-05)]_56 chr3R:25756257-25756377 1.04e-01 3_[+3(6.09e-05)]_109 chrX:2546828-2546948 6.02e-01 120 chr3R:7522466-7522586 4.08e-01 120 chr3R:30923734-30923854 6.61e-01 120 chrX:3298044-3298164 5.85e-03 69_[+1(1.87e-05)]_43 chr2R:6173406-6173526 7.80e-01 120 chr2L:14529785-14529905 9.33e-01 120 chr3L:19156322-19156442 4.14e-03 65_[+3(4.25e-05)]_9_[+2(6.50e-05)]_\ 2_[+2(6.50e-05)]_20 chr3R:19390046-19390166 7.89e-03 120 chrX:18493000-18493120 6.01e-02 6_[+2(3.26e-05)]_106 chr2L:20910811-20910931 2.81e-01 120 chr2R:6682499-6682619 7.86e-01 120 chr3L:12884757-12884877 6.13e-01 120 chr2R:11425245-11425365 1.61e-02 28_[+5(3.53e-05)]_35_[+2(8.38e-05)]_\ 41 chrX:5715784-5715904 1.05e-01 32_[+1(1.87e-05)]_80 chr2R:15326481-15326601 9.58e-01 120 chr3L:2458611-2458731 3.64e-01 120 chr2L:7242533-7242653 5.64e-04 20_[+3(4.25e-05)]_73_[+2(8.38e-05)]_\ 11 chr3R:21180188-21180308 7.15e-03 3_[+3(1.19e-05)]_109 chr3L:19648719-19648839 8.75e-01 120 chr2L:4899719-4899839 1.31e-01 120 chrX:14784311-14784431 6.01e-02 26_[+1(1.87e-05)]_86 chr3L:7398141-7398261 3.55e-02 10_[+4(9.66e-06)]_102 chrX:11342922-11343042 1.74e-01 120 chr2L:2243172-2243292 4.39e-01 120 chr3L:14616741-14616861 4.09e-01 120 chr2L:13435168-13435288 7.89e-01 120 chr2R:17598560-17598680 1.85e-01 120 chr3L:9339049-9339169 5.78e-03 24_[+1(6.85e-05)]_29_[+3(4.25e-05)]_\ 51 chr3L:7940732-7940852 2.74e-02 111_[+1(1.87e-05)]_1 chrX:16836560-16836680 1.23e-01 120 chr2L:1114435-1114555 8.28e-04 53_[+4(1.89e-05)]_59 chr2L:8255515-8255635 5.58e-01 120 chr3R:10612030-10612150 8.45e-01 120 chr2L:14488970-14489090 1.90e-02 100_[+1(1.87e-05)]_12 chr3L:15532056-15532176 4.76e-03 44_[+2(3.26e-05)]_68 chrX:8685616-8685736 1.85e-02 101_[+1(1.87e-05)]_11 chr2L:1631601-1631721 2.49e-02 61_[+2(6.50e-05)]_51 chr2L:10305850-10305970 2.79e-01 120 chr2R:16009135-16009255 2.28e-01 120 chr2L:14540847-14540967 1.41e-02 106_[+2(9.15e-05)]_6 chr2R:9561485-9561605 6.78e-02 47_[+1(1.87e-05)]_65 chrX:10484365-10484485 1.67e-01 45_[+1(1.87e-05)]_67 chr2L:16910262-16910382 1.58e-01 [+1(3.65e-05)]_112 chr2L:12469039-12469159 3.81e-01 120 chr2R:22078282-22078402 3.56e-02 108_[+3(4.25e-05)]_4 chr2L:8987652-8987772 2.07e-02 56_[+2(3.26e-05)]_36_[+2(3.26e-05)]_\ 12 chr3R:20605919-20606039 3.21e-01 120 chr2L:5025655-5025775 1.45e-01 120 chr3R:16310122-16310242 1.01e-01 120 chr3R:12411559-12411679 2.46e-01 46_[+1(9.89e-05)]_66 chr3L:10089660-10089780 1.40e-01 120 chr3L:8448275-8448395 3.31e-02 47_[+2(5.24e-05)]_65 chr3R:20547377-20547497 2.90e-01 120 chr3L:1305412-1305532 3.42e-01 120 chr2L:5198763-5198883 5.34e-01 120 chr3L:3306573-3306693 5.30e-01 120 chr2R:17756514-17756634 2.48e-02 120 chr3R:20307669-20307789 9.58e-01 120 chr3L:14558129-14558249 2.42e-01 120 chr2L:4475487-4475607 6.46e-01 120 chr3R:19835122-19835242 1.53e-01 120 chr2R:7532418-7532538 1.12e-01 120 chr2R:14493360-14493480 2.49e-03 12_[+5(2.83e-05)]_100 chr3R:23181407-23181527 9.46e-01 120 chr3R:21245977-21246097 8.17e-02 120 chrX:16920824-16920944 1.62e-02 76_[+2(8.38e-05)]_36 chr3R:27954658-27954778 7.30e-01 120 chr2L:1720102-1720222 1.38e-01 120 chr2L:12029770-12029890 2.63e-01 120 chr3L:12705009-12705129 3.11e-02 28_[+5(2.15e-05)]_84 chr2L:1912591-1912711 4.19e-01 120 chrX:12613541-12613661 9.27e-01 120 chr3R:26245741-26245861 8.57e-01 120 chr3L:4116586-4116706 8.05e-01 120 chrX:6010678-6010798 4.80e-03 99_[+2(3.26e-05)]_13 chr3R:19793589-19793709 5.41e-01 120 chr3L:20494925-20495045 1.94e-01 120 chr3L:11233646-11233766 1.80e-02 104_[+3(6.09e-05)]_8 chrX:3365736-3365856 2.09e-01 120 chrX:19292339-19292459 5.40e-01 120 chr2L:14378172-14378292 2.84e-01 120 chrX:16747679-16747799 2.51e-02 83_[+1(1.87e-05)]_29 chr2R:21638740-21638860 9.12e-03 120 chrX:2654063-2654183 3.44e-01 120 chr3R:20988694-20988814 2.35e-01 120 chr3R:7514556-7514676 8.45e-02 120 chrX:12013216-12013336 1.81e-02 58_[+1(3.65e-05)]_54 chr3L:448750-448870 7.08e-02 120 chr2R:8715353-8715473 2.08e-01 120 chr2R:22840133-22840253 8.43e-06 21_[+3(4.25e-05)]_29_[+1(1.87e-05)]_\ 34_[+2(3.26e-05)]_12 chr2L:6868317-6868437 1.35e-03 21_[+5(6.72e-06)]_28_[+5(9.39e-05)]_\ 55 chr3R:26984559-26984679 1.84e-02 120 chr2L:3641178-3641298 2.77e-01 120 chr3R:10647855-10647975 9.13e-01 120 chr2L:4195773-4195893 5.22e-01 120 chr3L:21274590-21274710 5.11e-03 61_[+1(6.85e-05)]_51 chr2R:13962947-13963067 2.75e-05 21_[+5(1.75e-05)]_57_[+4(7.28e-06)]_\ 14_[+3(4.25e-05)]_4 chr2L:21838986-21839106 9.51e-02 120 chrX:3444911-3445031 1.00e+00 120 chr3L:11947224-11947344 2.41e-01 120 chr2R:8443024-8443144 1.29e-02 20_[+1(9.89e-05)]_92 chr2L:14611436-14611556 8.16e-02 120 chr3R:22998081-22998201 2.14e-03 87_[+5(1.36e-05)]_25 chr2R:16652763-16652883 3.75e-02 44_[+4(2.50e-05)]_68 chr3R:12715218-12715338 9.29e-03 99_[+4(7.28e-06)]_13 chr3R:23727819-23727939 1.78e-02 12_[+2(3.26e-05)]_100 chr2R:17712462-17712582 1.50e-01 120 chrX:16934549-16934669 1.28e-02 24_[+3(1.19e-05)]_88 chr2L:5147985-5148105 1.20e-01 109_[+3(4.25e-05)]_3 chrX:10485028-10485148 7.44e-01 120 chr3L:11535051-11535171 9.62e-01 120 chr2R:9079275-9079395 1.86e-02 120 chr3R:5309406-5309526 2.23e-03 4_[+2(5.24e-05)]_32_[+1(3.65e-05)]_\ 68 chr3R:19609860-19609980 5.76e-01 120 chr2L:14494956-14495076 3.37e-01 120 chr3L:8453557-8453677 2.67e-02 120 chr2R:17694314-17694434 5.14e-01 120 chr2L:1731064-1731184 9.04e-01 120 chr2R:22557011-22557131 4.47e-01 120 chr3L:16820080-16820200 5.76e-01 120 chrX:9298141-9298261 7.02e-01 120 chr3L:9506543-9506663 5.08e-01 120 chr3L:1519300-1519420 6.80e-01 120 chr2L:5720374-5720494 5.72e-01 120 chr2L:838964-839084 6.62e-01 120 chr2R:17400080-17400200 6.04e-01 120 chr2L:14232831-14232951 8.29e-01 120 chr3R:24865028-24865148 2.17e-02 96_[+2(3.26e-05)]_16 chr3L:2237712-2237832 4.70e-01 120 chr3R:26105123-26105243 6.07e-01 120 chr3R:21141590-21141710 2.30e-03 21_[+3(4.25e-05)]_83_[+4(1.89e-05)] chr3R:23189398-23189518 1.10e-03 11_[+3(6.09e-05)]_18_[+5(1.75e-05)]_\ 75 chr2R:18526494-18526614 1.64e-01 78_[+2(5.24e-05)]_34 chr2L:11841653-11841773 2.98e-02 36_[+2(9.15e-05)]_76 chr2L:10147229-10147349 1.95e-01 120 chr3R:30913896-30914016 1.14e-03 31_[+1(3.65e-05)]_24_[+2(8.38e-05)]_\ 49 chrX:1257148-1257268 4.21e-04 32_[+5(1.36e-05)]_36_[+2(3.26e-05)]_\ 36 chr2R:17477392-17477512 3.80e-01 120 chr2L:8087337-8087457 2.26e-01 42_[+2(3.26e-05)]_70 chr3L:1745502-1745622 2.40e-01 120 chr2L:3461844-3461964 1.10e-03 33_[+3(4.25e-05)]_19_[+4(9.66e-06)]_\ 52 chr3R:18291760-18291880 7.97e-01 120 chr3R:4294820-4294940 3.75e-02 14_[+3(7.25e-05)]_98 chr2R:6202573-6202693 6.01e-06 10_[+4(1.33e-06)]_36_[+3(4.25e-05)]_\ 47_[+5(1.36e-05)]_3 chrX:5715994-5716114 1.34e-01 120 chr3L:20221490-20221610 9.39e-01 120 chr2R:18810484-18810604 3.36e-02 31_[+3(4.25e-05)]_81 chr3L:7942522-7942642 3.19e-02 84_[+5(1.36e-05)]_28 chr2L:4218982-4219102 8.64e-01 120 chr2L:12494073-12494193 8.77e-02 120 chr3L:7951958-7952078 1.50e-04 64_[+5(6.72e-06)]_48 chr3R:24090281-24090401 4.81e-01 120 chr3R:10119754-10119874 2.85e-02 120 chrX:16671163-16671283 7.93e-01 120 chr2R:7731023-7731143 6.93e-01 120 chr2L:137209-137329 4.48e-01 120 chr2R:12645282-12645402 1.80e-03 96_[+3(4.25e-05)]_16 chr2L:9768871-9768991 4.45e-01 120 chr2R:18695842-18695962 7.73e-01 120 chr2L:4896816-4896936 1.21e-02 112_[+4(1.19e-05)] chrX:16749408-16749528 5.04e-02 120 chr3R:21150240-21150360 4.65e-01 120 chr2R:19980919-19981039 2.41e-02 120 chr3L:17902308-17902428 2.59e-02 1_[+3(6.09e-05)]_111 chr2L:18985849-18985969 5.85e-01 120 chr2R:9601940-9602060 1.24e-01 120 chr3R:24053900-24054020 1.27e-02 23_[+4(4.98e-06)]_89 chr3L:16671378-16671498 2.94e-01 120 chr3R:18895367-18895487 6.25e-01 120 chr2L:10323234-10323354 2.28e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************