******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/nmo.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:18227468-18227588 1.0000 120 chr2R:11755335-11755455 1.0000 120 chr2L:6914056-6914176 1.0000 120 chr3R:18677626-18677746 1.0000 120 chr2R:5293832-5293952 1.0000 120 chr2R:15378745-15378865 1.0000 120 chrX:16276129-16276249 1.0000 120 chr3L:19598876-19598996 1.0000 120 chr3R:28805232-28805352 1.0000 120 chr2L:14537554-14537674 1.0000 120 chr2R:15322317-15322437 1.0000 120 chrX:8178223-8178343 1.0000 120 chr3R:21887688-21887808 1.0000 120 chr3L:16054235-16054355 1.0000 120 chr3L:8029504-8029624 1.0000 120 chr3L:24028377-24028497 1.0000 120 chr3L:3873198-3873318 1.0000 120 chr2L:17473244-17473364 1.0000 120 chr3L:7634890-7635010 1.0000 120 chr2R:22384484-22384604 1.0000 120 chr3L:25115940-25116060 1.0000 120 chr2R:5363190-5363310 1.0000 120 chr2R:24337651-24337771 1.0000 120 chr2R:8420787-8420907 1.0000 120 chr3R:16715763-16715883 1.0000 120 chrX:10741116-10741236 1.0000 120 chr2R:12344797-12344917 1.0000 120 chr2L:8746376-8746496 1.0000 120 chr3R:24817171-24817291 1.0000 120 chr2L:7293597-7293717 1.0000 120 chr3L:6173984-6174104 1.0000 120 chr3L:27279187-27279307 1.0000 120 chr3L:6797594-6797714 1.0000 120 chr3L:19073958-19074078 1.0000 120 chr2L:10488617-10488737 1.0000 120 chr3R:14308801-14308921 1.0000 120 chrX:3455539-3455659 1.0000 120 chrX:7418001-7418121 1.0000 120 chr2R:20126719-20126839 1.0000 120 chr3L:9864388-9864508 1.0000 120 chr3R:20057589-20057709 1.0000 120 chr3L:23125846-23125966 1.0000 120 chr2R:11219419-11219539 1.0000 120 chr3L:10428880-10429000 1.0000 120 chr3L:7978831-7978951 1.0000 120 chr3R:27826352-27826472 1.0000 120 chrX:8677578-8677698 1.0000 120 chr2R:20587299-20587419 1.0000 120 chr3L:10786062-10786182 1.0000 120 chr3R:14386288-14386408 1.0000 120 chr2L:7966184-7966304 1.0000 120 chr3L:7592235-7592355 1.0000 120 chrX:16768908-16769028 1.0000 120 chr3R:9335081-9335201 1.0000 120 chr3L:15693166-15693286 1.0000 120 chr3R:6241343-6241463 1.0000 120 chrX:19146462-19146582 1.0000 120 chr3L:15174977-15175097 1.0000 120 chr2R:4130906-4131026 1.0000 120 chr3R:26725194-26725314 1.0000 120 chrX:12225425-12225545 1.0000 120 chr3L:19446818-19446938 1.0000 120 chr3L:1568910-1569030 1.0000 120 chr2L:19430438-19430558 1.0000 120 chr3R:29699356-29699476 1.0000 120 chr2L:7150919-7151039 1.0000 120 chr2R:1264234-1264354 1.0000 120 chr2R:20996155-20996275 1.0000 120 chrX:4540668-4540788 1.0000 120 chr2L:10362721-10362841 1.0000 120 chr2R:7387217-7387337 1.0000 120 chr3R:21613017-21613137 1.0000 120 chr2L:5403725-5403845 1.0000 120 chr2R:10645527-10645647 1.0000 120 chrX:19106981-19107101 1.0000 120 chr3L:7962170-7962290 1.0000 120 chr3R:23820459-23820579 1.0000 120 chr2R:5496109-5496229 1.0000 120 chr2L:5445950-5446070 1.0000 120 chr3R:26444270-26444390 1.0000 120 chr3L:1302773-1302893 1.0000 120 chr2L:13203458-13203578 1.0000 120 chr2R:16955297-16955417 1.0000 120 chr2R:9681923-9682043 1.0000 120 chr3L:1534164-1534284 1.0000 120 chr3R:30734713-30734833 1.0000 120 chr2L:21573251-21573371 1.0000 120 chrX:14743902-14744022 1.0000 120 chr2L:3805341-3805461 1.0000 120 chr3R:13448507-13448627 1.0000 120 chrX:14234201-14234321 1.0000 120 chr3R:10636167-10636287 1.0000 120 chr2L:19792005-19792125 1.0000 120 chr3R:4400078-4400198 1.0000 120 chrX:14247444-14247564 1.0000 120 chr2R:9579016-9579136 1.0000 120 chr3L:10337727-10337847 1.0000 120 chr3L:13403240-13403360 1.0000 120 chrX:6255498-6255618 1.0000 120 chr3L:27083936-27084056 1.0000 120 chr3L:2237160-2237280 1.0000 120 chr3L:10767290-10767410 1.0000 120 chr3R:19627894-19628014 1.0000 120 chrX:14679278-14679398 1.0000 120 chr3R:26717510-26717630 1.0000 120 chr3L:25120562-25120682 1.0000 120 chr2L:5542339-5542459 1.0000 120 chr3R:21594493-21594613 1.0000 120 chr3L:16386054-16386174 1.0000 120 chr2L:3851433-3851553 1.0000 120 chr3L:295120-295240 1.0000 120 chr2L:10314516-10314636 1.0000 120 chr3L:4553560-4553680 1.0000 120 chr3L:2651899-2652019 1.0000 120 chr2L:14537754-14537874 1.0000 120 chr3L:11350706-11350826 1.0000 120 chr3L:8629071-8629191 1.0000 120 chr3R:13011346-13011466 1.0000 120 chr2L:17588761-17588881 1.0000 120 chr2L:9206528-9206648 1.0000 120 chrX:2396621-2396741 1.0000 120 chr2L:2739953-2740073 1.0000 120 chr2L:6649189-6649309 1.0000 120 chr3L:10350819-10350939 1.0000 120 chr2R:23713259-23713379 1.0000 120 chr2L:10970243-10970363 1.0000 120 chr3L:9042749-9042869 1.0000 120 chr3L:18748494-18748614 1.0000 120 chrX:7703082-7703202 1.0000 120 chr3R:8362615-8362735 1.0000 120 chr3L:22277301-22277421 1.0000 120 chr3R:9159938-9160058 1.0000 120 chr3R:19014979-19015099 1.0000 120 chrX:8125399-8125519 1.0000 120 chr3L:8024923-8025043 1.0000 120 chr3R:24318510-24318630 1.0000 120 chr2R:19874630-19874750 1.0000 120 chr2R:5128343-5128463 1.0000 120 chr3L:6054936-6055056 1.0000 120 chr3R:15652719-15652839 1.0000 120 chr3R:11431652-11431772 1.0000 120 chr3R:17043232-17043352 1.0000 120 chr3L:18402679-18402799 1.0000 120 chr3R:11852111-11852231 1.0000 120 chr2L:13905400-13905520 1.0000 120 chrX:18783648-18783768 1.0000 120 chr3L:4254383-4254503 1.0000 120 chr2R:21514493-21514613 1.0000 120 chr3R:13964627-13964747 1.0000 120 chrX:12221692-12221812 1.0000 120 chr3L:12734700-12734820 1.0000 120 chrX:9119418-9119538 1.0000 120 chr3L:12336472-12336592 1.0000 120 chr3R:13793422-13793542 1.0000 120 chr3L:13917962-13918082 1.0000 120 chrX:20423869-20423989 1.0000 120 chrX:21324042-21324162 1.0000 120 chr2L:15442308-15442428 1.0000 120 chr3L:8951216-8951336 1.0000 120 chr2L:13296254-13296374 1.0000 120 chr3R:9039570-9039690 1.0000 120 chrX:8445028-8445148 1.0000 120 chrX:11081352-11081472 1.0000 120 chr2L:8471806-8471926 1.0000 120 chr3L:5813113-5813233 1.0000 120 chr2R:5122250-5122370 1.0000 120 chr3R:25184152-25184272 1.0000 120 chr3R:16573879-16573999 1.0000 120 chr2L:10221200-10221320 1.0000 120 chr2L:9711293-9711413 1.0000 120 chr3R:11235091-11235211 1.0000 120 chr3R:16764138-16764258 1.0000 120 chrX:12454489-12454609 1.0000 120 chrX:15890262-15890382 1.0000 120 chr3R:22878533-22878653 1.0000 120 chr2L:5520063-5520183 1.0000 120 chr2L:11091232-11091352 1.0000 120 chrX:16650578-16650698 1.0000 120 chr3R:18670601-18670721 1.0000 120 chr3L:18109551-18109671 1.0000 120 chr3L:10206337-10206457 1.0000 120 chr4:671025-671145 1.0000 120 chr3R:10893518-10893638 1.0000 120 chr3L:6817097-6817217 1.0000 120 chr4:1060902-1061022 1.0000 120 chr3R:6468132-6468252 1.0000 120 chrX:17768276-17768396 1.0000 120 chr3R:15644911-15645031 1.0000 120 chrX:13764539-13764659 1.0000 120 chrX:18921065-18921185 1.0000 120 chr3R:8349612-8349732 1.0000 120 chr3R:26014406-26014526 1.0000 120 chr3R:26012927-26013047 1.0000 120 chr3R:16811863-16811983 1.0000 120 chrX:13404034-13404154 1.0000 120 chr3L:10931568-10931688 1.0000 120 chr2R:21364864-21364984 1.0000 120 chr3L:13964784-13964904 1.0000 120 chr3R:11967550-11967670 1.0000 120 chr2R:15934717-15934837 1.0000 120 chr2L:3856486-3856606 1.0000 120 chr2L:10543532-10543652 1.0000 120 chr3R:8867857-8867977 1.0000 120 chr2L:4459690-4459810 1.0000 120 chr3L:16231997-16232117 1.0000 120 chr3L:16045455-16045575 1.0000 120 chr2L:2214121-2214241 1.0000 120 chrX:13274591-13274711 1.0000 120 chr3L:9028145-9028265 1.0000 120 chr3L:14363210-14363330 1.0000 120 chr3R:28857418-28857538 1.0000 120 chrX:16441351-16441471 1.0000 120 chr3L:6969357-6969477 1.0000 120 chr2L:14562362-14562482 1.0000 120 chr3R:14904203-14904323 1.0000 120 chr3R:6345906-6346026 1.0000 120 chr2L:9763295-9763415 1.0000 120 chr2L:7828333-7828453 1.0000 120 chr3L:19898990-19899110 1.0000 120 chr3L:11074574-11074694 1.0000 120 chr2L:7270417-7270537 1.0000 120 chr3L:20630752-20630872 1.0000 120 chr3L:5152489-5152609 1.0000 120 chr2R:21017546-21017666 1.0000 120 chr2L:20757925-20758045 1.0000 120 chr3L:8063585-8063705 1.0000 120 chr2L:4971498-4971618 1.0000 120 chr3L:18250843-18250963 1.0000 120 chr3R:11368850-11368970 1.0000 120 chr3R:19877601-19877721 1.0000 120 chr3R:30263864-30263984 1.0000 120 chr2L:16310701-16310821 1.0000 120 chr3R:18663571-18663691 1.0000 120 chr3L:5765609-5765729 1.0000 120 chr3L:3855312-3855432 1.0000 120 chr2R:23697908-23698028 1.0000 120 chrX:15712518-15712638 1.0000 120 chr3R:4846928-4847048 1.0000 120 chr2L:14245621-14245741 1.0000 120 chr2L:4579154-4579274 1.0000 120 chr3L:10745713-10745833 1.0000 120 chr3R:12980765-12980885 1.0000 120 chr3R:30004783-30004903 1.0000 120 chr3R:16837966-16838086 1.0000 120 chr2L:8365810-8365930 1.0000 120 chr2R:7254359-7254479 1.0000 120 chr2R:17590761-17590881 1.0000 120 chr3L:16779813-16779933 1.0000 120 chrX:16854830-16854950 1.0000 120 chr3R:12985905-12986025 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_nmo/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/nmo.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.347 C 0.146 G 0.149 T 0.358 Background letter frequencies (from file dataset with add-one prior applied): A 0.347 C 0.146 G 0.149 T 0.358 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGCVCTG MEME-1 width = 8 sites = 17 llr = 171 E-value = 9.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:12::: pos.-specific C 6::94a1: probability G ::a:4:1a matrix T 2:::1:8: bits 2.8 * * * 2.5 ** * * 2.2 ** * * 1.9 ** * * Relative 1.7 ** * * Entropy 1.4 *** * * (14.5 bits) 1.1 *** * * 0.8 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CAGCCCTG consensus T G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30004783-30004903 95 2.53e-06 CTACAAGTGG CAGCCCTG CGATTTTGAT chr3R:6345906-6346026 18 2.53e-06 TGCACTCGAC CAGCCCTG AATTTCAAAG chr2L:13296254-13296374 50 2.53e-06 ACTCTAATGG CAGCGCTG GCGAACGACA chr2L:19430438-19430558 61 2.53e-06 CTTAATAACA CAGCGCTG TTCAATTTGT chr3L:5152489-5152609 96 6.54e-06 CTACATTTGA CAGCACTG CGACTTCCGC chr2L:2739953-2740073 69 6.54e-06 CGTCATCTGG CAGCACTG TAAGGGTATG chr2R:23697908-23698028 91 7.60e-06 TTATTTAATT CAGCGCGG AATAGGTTCA chr3L:16231997-16232117 79 1.38e-05 TGCGTTTGAG TAGCCCTG GTCATTCGGT chrX:14234201-14234321 48 1.38e-05 ATTGGAAAAT TAGCGCTG AGCAATGCAA chr2R:10645527-10645647 96 1.38e-05 CTTTCGTAAC TAGCCCTG CCAGACTTTT chrX:13404034-13404154 31 1.98e-05 AGTGTTCGTT AAGCCCTG AGTAAATGCA chr3R:9335081-9335201 107 1.98e-05 GGAAATATCT AAGCCCTG ATTCGT chr3R:23820459-23820579 58 2.10e-05 GTATTTCTTT CAGCACCG CATGGTATCT chr2L:6914056-6914176 72 2.41e-05 AATAAAATAC CAGCTCTG ACTGAAAAAA chr2L:7828333-7828453 80 3.76e-05 TCCAACAGCC AAGCGCCG CATTGCCGCG chr2R:5293832-5293952 59 3.76e-05 GTTTATTTCT TAGCACTG GATCAAGAAC chr2R:11219419-11219539 37 5.33e-05 TATTCAAATC CAGAGCTG CCACCTGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30004783-30004903 2.5e-06 94_[+1]_18 chr3R:6345906-6346026 2.5e-06 17_[+1]_95 chr2L:13296254-13296374 2.5e-06 49_[+1]_63 chr2L:19430438-19430558 2.5e-06 60_[+1]_52 chr3L:5152489-5152609 6.5e-06 95_[+1]_17 chr2L:2739953-2740073 6.5e-06 68_[+1]_44 chr2R:23697908-23698028 7.6e-06 90_[+1]_22 chr3L:16231997-16232117 1.4e-05 78_[+1]_34 chrX:14234201-14234321 1.4e-05 47_[+1]_65 chr2R:10645527-10645647 1.4e-05 95_[+1]_17 chrX:13404034-13404154 2e-05 30_[+1]_82 chr3R:9335081-9335201 2e-05 106_[+1]_6 chr3R:23820459-23820579 2.1e-05 57_[+1]_55 chr2L:6914056-6914176 2.4e-05 71_[+1]_41 chr2L:7828333-7828453 3.8e-05 79_[+1]_33 chr2R:5293832-5293952 3.8e-05 58_[+1]_54 chr2R:11219419-11219539 5.3e-05 36_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCVCTG width=8 seqs=17 chr3R:30004783-30004903 ( 95) CAGCCCTG 1 chr3R:6345906-6346026 ( 18) CAGCCCTG 1 chr2L:13296254-13296374 ( 50) CAGCGCTG 1 chr2L:19430438-19430558 ( 61) CAGCGCTG 1 chr3L:5152489-5152609 ( 96) CAGCACTG 1 chr2L:2739953-2740073 ( 69) CAGCACTG 1 chr2R:23697908-23698028 ( 91) CAGCGCGG 1 chr3L:16231997-16232117 ( 79) TAGCCCTG 1 chrX:14234201-14234321 ( 48) TAGCGCTG 1 chr2R:10645527-10645647 ( 96) TAGCCCTG 1 chrX:13404034-13404154 ( 31) AAGCCCTG 1 chr3R:9335081-9335201 ( 107) AAGCCCTG 1 chr3R:23820459-23820579 ( 58) CAGCACCG 1 chr2L:6914056-6914176 ( 72) CAGCTCTG 1 chr2L:7828333-7828453 ( 80) AAGCGCCG 1 chr2R:5293832-5293952 ( 59) TAGCACTG 1 chr2R:11219419-11219539 ( 37) CAGAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 9.9e+000 -97 201 -1073 -61 153 -1073 -1073 -1073 -1073 -1073 275 -1073 -256 269 -1073 -1073 -56 128 124 -260 -1073 278 -1073 -1073 -1073 -31 -134 120 -1073 -1073 275 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 9.9e+000 0.176471 0.588235 0.000000 0.235294 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.235294 0.352941 0.352941 0.058824 0.000000 1.000000 0.000000 0.000000 0.000000 0.117647 0.058824 0.823529 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCVCTG MEME-1 regular expression -------------------------------------------------------------------------------- [CT]AGC[CGA]CTG -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCCMA MEME-2 width = 8 sites = 7 llr = 83 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::4a pos.-specific C :3a:a96: probability G a7:9:1:: matrix T :::1:::: bits 2.8 * * * 2.5 * * * 2.2 * * ** 1.9 ****** Relative 1.7 ****** Entropy 1.4 ******** (17.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCGCCCA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13296254-13296374 1 5.22e-07 . GGCGCCCA AAGTACGCGC chr3R:9335081-9335201 3 5.22e-07 CA GGCGCCCA ACTGCACAGC chr2R:24337651-24337771 106 2.27e-06 CTTGTCAGTT GGCGCCAA TTCATGC chr3R:28805232-28805352 5 2.27e-06 CTTG GGCGCCAA CGGCCAACGG chr3R:16811863-16811983 6 4.02e-06 CAATG GCCGCCAA TGGCTAAGCG chr2L:7828333-7828453 92 5.79e-06 GCGCCGCATT GCCGCGCA CAAGTGCGAG chrX:16768908-16769028 42 5.79e-06 aaatataaat GGCTCCCA AAGCAGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13296254-13296374 5.2e-07 [+2]_112 chr3R:9335081-9335201 5.2e-07 2_[+2]_110 chr2R:24337651-24337771 2.3e-06 105_[+2]_7 chr3R:28805232-28805352 2.3e-06 4_[+2]_108 chr3R:16811863-16811983 4e-06 5_[+2]_107 chr2L:7828333-7828453 5.8e-06 91_[+2]_21 chrX:16768908-16769028 5.8e-06 41_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCCMA width=8 seqs=7 chr2L:13296254-13296374 ( 1) GGCGCCCA 1 chr3R:9335081-9335201 ( 3) GGCGCCCA 1 chr2R:24337651-24337771 ( 106) GGCGCCAA 1 chr3R:28805232-28805352 ( 5) GGCGCCAA 1 chr3R:16811863-16811983 ( 6) GCCGCCAA 1 chr2L:7828333-7828453 ( 92) GCCGCGCA 1 chrX:16768908-16769028 ( 42) GGCTCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 1.5e+002 -945 -945 274 -945 -945 97 226 -945 -945 278 -945 -945 -945 -945 252 -132 -945 278 -945 -945 -945 255 -6 -945 31 197 -945 -945 153 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCMA MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]CGCC[CA]A -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCDCAC MEME-3 width = 8 sites = 10 llr = 107 E-value = 5.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::2:8: pos.-specific C :a:9:9:9 probability G a::14121 matrix T ::a:4::: bits 2.8 ** 2.5 ** 2.2 ** * * * 1.9 ** * * * Relative 1.7 ** * * * Entropy 1.4 **** * * (15.4 bits) 1.1 **** *** 0.8 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCTCGCAC consensus T G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7828333-7828453 20 1.25e-06 GTGCCCTCTT GCTCGCAC AGTAGCGGCG chrX:17768276-17768396 87 1.25e-06 TTTCCCTCTC GCTCGCAC GCTCTCGCAC chr2R:23713259-23713379 100 4.80e-06 ATGCAGCTTA GCTCTCAC CCTTGGCAAC chr2L:5403725-5403845 42 4.80e-06 GCAACAAAAG GCTCTCAC TCAAATACGG chrX:15712518-15712638 9 9.01e-06 TGTTTCAT GCTCACAC AACAAAATTT chr3R:16764138-16764258 49 9.01e-06 CGCTCGGATC GCTCTCGC TTTACGGCGC chr3R:16573879-16573999 2 1.03e-05 T GCTCACGC TAAAAATAGA chr3R:16811863-16811983 48 1.41e-05 ATGGCTGCTG GCTCGCAG GACGGAGTGA chr2L:17473244-17473364 23 1.41e-05 AATGCGCTTA GCTCGGAC CCAAACCTCG chr2L:13296254-13296374 78 2.50e-05 ATCATATATA GCTGTCAC TTTCCCCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7828333-7828453 1.3e-06 19_[+3]_93 chrX:17768276-17768396 1.3e-06 86_[+3]_26 chr2R:23713259-23713379 4.8e-06 99_[+3]_13 chr2L:5403725-5403845 4.8e-06 41_[+3]_71 chrX:15712518-15712638 9e-06 8_[+3]_104 chr3R:16764138-16764258 9e-06 48_[+3]_64 chr3R:16573879-16573999 1e-05 1_[+3]_111 chr3R:16811863-16811983 1.4e-05 47_[+3]_65 chr2L:17473244-17473364 1.4e-05 22_[+3]_90 chr2L:13296254-13296374 2.5e-05 77_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCDCAC width=8 seqs=10 chr2L:7828333-7828453 ( 20) GCTCGCAC 1 chrX:17768276-17768396 ( 87) GCTCGCAC 1 chr2R:23713259-23713379 ( 100) GCTCTCAC 1 chr2L:5403725-5403845 ( 42) GCTCTCAC 1 chrX:15712518-15712638 ( 9) GCTCACAC 1 chr3R:16764138-16764258 ( 49) GCTCTCGC 1 chr3R:16573879-16573999 ( 2) GCTCACGC 1 chr3R:16811863-16811983 ( 48) GCTCGCAG 1 chr2L:17473244-17473364 ( 23) GCTCGGAC 1 chr2L:13296254-13296374 ( 78) GCTGTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 5.8e+002 -997 -997 274 -997 -997 278 -997 -997 -997 -997 -997 148 -997 262 -58 -997 -79 -997 142 16 -997 262 -58 -997 121 -997 42 -997 -997 262 -58 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.8e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.100000 0.000000 0.200000 0.000000 0.400000 0.400000 0.000000 0.900000 0.100000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.900000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCDCAC MEME-3 regular expression -------------------------------------------------------------------------------- GCTC[GTA]C[AG]C -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GYGYWGCC MEME-4 width = 8 sites = 14 llr = 141 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C 15:41:a8 probability G 9:a1:a:2 matrix T :5:54::: bits 2.8 * ** 2.5 * ** 2.2 * * ** 1.9 * * *** Relative 1.7 * * *** Entropy 1.4 * * *** (14.5 bits) 1.1 *** *** 0.8 *** *** 0.6 **** *** 0.3 ******** 0.0 -------- Multilevel GCGTAGCC consensus T CT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16764138-16764258 63 5.22e-07 TCGCTTTACG GCGCAGCC ATTATGGTGC chr3R:23820459-23820579 89 3.84e-06 GGGGACGCGA GTGCAGCC ACACCAAAAG chr2L:7828333-7828453 42 6.23e-06 GCGGCGGCTT GCGTCGCC ATATTGGAAT chr2L:13296254-13296374 17 6.23e-06 CAAAGTACGC GCGTTGCC AGATTCGAGT chr2L:2739953-2740073 42 6.23e-06 GCTCTTATTT GCGTTGCC CTTGCTTTTC chr3L:7978831-7978951 17 6.23e-06 GGGCAATCTG GCGTTGCC ATCCTGCTTT chr3L:18109551-18109671 25 1.25e-05 ATAGACTTGA GTGTAGCC AGATGACTTT chr3R:13964627-13964747 3 1.97e-05 AC GTGTTGCC AACAAACACT chr3R:14308801-14308921 64 1.97e-05 TCGAAGGCCA CCGCAGCC GTTGCTCGGT chr2R:24337651-24337771 35 2.49e-05 GATAACTTAT GTGGCGCC ATCTAGGCAA chr3L:1568910-1569030 109 2.74e-05 CCGAAGTCAA GCGGAGCG CAAG chr3R:8349612-8349732 83 3.05e-05 GATAAAGCCA GTGCTGCG GAAGCTTGTC chrX:20423869-20423989 64 3.25e-05 TTATAATACG CTGCAGCC GAAATTTTAA chr2R:23713259-23713379 74 3.81e-05 ATCTTGTTTT GTGTAGCG TATTCGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16764138-16764258 5.2e-07 62_[+4]_50 chr3R:23820459-23820579 3.8e-06 88_[+4]_24 chr2L:7828333-7828453 6.2e-06 41_[+4]_71 chr2L:13296254-13296374 6.2e-06 16_[+4]_96 chr2L:2739953-2740073 6.2e-06 41_[+4]_71 chr3L:7978831-7978951 6.2e-06 16_[+4]_96 chr3L:18109551-18109671 1.3e-05 24_[+4]_88 chr3R:13964627-13964747 2e-05 2_[+4]_110 chr3R:14308801-14308921 2e-05 63_[+4]_49 chr2R:24337651-24337771 2.5e-05 34_[+4]_78 chr3L:1568910-1569030 2.7e-05 108_[+4]_4 chr3R:8349612-8349732 3.1e-05 82_[+4]_30 chrX:20423869-20423989 3.3e-05 63_[+4]_49 chr2R:23713259-23713379 3.8e-05 73_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGYWGCC width=8 seqs=14 chr3R:16764138-16764258 ( 63) GCGCAGCC 1 chr3R:23820459-23820579 ( 89) GTGCAGCC 1 chr2L:7828333-7828453 ( 42) GCGTCGCC 1 chr2L:13296254-13296374 ( 17) GCGTTGCC 1 chr2L:2739953-2740073 ( 42) GCGTTGCC 1 chr3L:7978831-7978951 ( 17) GCGTTGCC 1 chr3L:18109551-18109671 ( 25) GTGTAGCC 1 chr3R:13964627-13964747 ( 3) GTGTTGCC 1 chr3R:14308801-14308921 ( 64) CCGCAGCC 1 chr2R:24337651-24337771 ( 35) GTGGCGCC 1 chr3L:1568910-1569030 ( 109) GCGGAGCG 1 chr3R:8349612-8349732 ( 83) GTGCTGCG 1 chrX:20423869-20423989 ( 64) CTGCAGCC 1 chr2R:23713259-23713379 ( 74) GTGTAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 1.0e+003 -1045 -3 252 -1045 -1045 178 -1045 48 -1045 -1045 274 -1045 -1045 129 -6 48 53 -3 -1045 0 -1045 -1045 274 -1045 -1045 278 -1045 -1045 -1045 243 52 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.0e+003 0.000000 0.142857 0.857143 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.357143 0.142857 0.500000 0.500000 0.142857 0.000000 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.785714 0.214286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGYWGCC MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]G[TC][AT]GC[CG] -------------------------------------------------------------------------------- Time 26.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCCGCS MEME-5 width = 8 sites = 2 llr = 28 E-value = 6.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aaaa:a5 probability G :::::a:5 matrix T a::::::: bits 2.8 ****** 2.5 ****** 2.2 ****** 1.9 ****** Relative 1.7 ******* Entropy 1.4 ******** (19.9 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TCCCCGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22384484-22384604 46 1.04e-06 TTTAGATAAT TCCCCGCG TGGCTTTCAT chr2R:15322317-15322437 90 1.04e-06 AATCACGATA TCCCCGCC AGTCACCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22384484-22384604 1e-06 45_[+5]_67 chr2R:15322317-15322437 1e-06 89_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCCGCS width=8 seqs=2 chr2R:22384484-22384604 ( 46) TCCCCGCG 1 chr2R:15322317-15322437 ( 90) TCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.6e+003 -765 -765 -765 148 -765 277 -765 -765 -765 277 -765 -765 -765 277 -765 -765 -765 277 -765 -765 -765 -765 274 -765 -765 277 -765 -765 -765 177 174 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCS MEME-5 regular expression -------------------------------------------------------------------------------- TCCCCGC[CG] -------------------------------------------------------------------------------- Time 32.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18227468-18227588 9.18e-01 120 chr2R:11755335-11755455 1.28e-01 120 chr2L:6914056-6914176 1.78e-04 71_[+1(2.41e-05)]_41 chr3R:18677626-18677746 9.95e-01 120 chr2R:5293832-5293952 2.50e-01 58_[+1(3.76e-05)]_54 chr2R:15378745-15378865 1.45e-01 120 chrX:16276129-16276249 7.83e-01 120 chr3L:19598876-19598996 9.65e-01 120 chr3R:28805232-28805352 1.08e-02 4_[+2(2.27e-06)]_108 chr2L:14537554-14537674 3.75e-01 120 chr2R:15322317-15322437 1.05e-03 89_[+5(1.04e-06)]_23 chrX:8178223-8178343 9.76e-01 120 chr3R:21887688-21887808 9.78e-01 120 chr3L:16054235-16054355 9.98e-01 120 chr3L:8029504-8029624 1.30e-01 120 chr3L:24028377-24028497 2.04e-02 120 chr3L:3873198-3873318 9.96e-01 120 chr2L:17473244-17473364 1.45e-05 22_[+3(1.41e-05)]_90 chr3L:7634890-7635010 8.51e-01 120 chr2R:22384484-22384604 2.39e-03 45_[+5(1.04e-06)]_67 chr3L:25115940-25116060 3.26e-01 120 chr2R:5363190-5363310 6.56e-01 120 chr2R:24337651-24337771 4.72e-05 34_[+4(2.49e-05)]_63_[+2(2.27e-06)]_\ 7 chr2R:8420787-8420907 5.03e-01 120 chr3R:16715763-16715883 5.15e-02 120 chrX:10741116-10741236 9.62e-01 120 chr2R:12344797-12344917 2.68e-01 120 chr2L:8746376-8746496 3.07e-01 120 chr3R:24817171-24817291 9.97e-01 120 chr2L:7293597-7293717 7.81e-01 120 chr3L:6173984-6174104 9.99e-01 120 chr3L:27279187-27279307 9.20e-01 120 chr3L:6797594-6797714 9.79e-01 120 chr3L:19073958-19074078 9.99e-01 120 chr2L:10488617-10488737 2.26e-01 120 chr3R:14308801-14308921 1.20e-02 63_[+4(1.97e-05)]_49 chrX:3455539-3455659 9.95e-01 120 chrX:7418001-7418121 8.72e-01 120 chr2R:20126719-20126839 9.25e-01 120 chr3L:9864388-9864508 3.59e-01 120 chr3R:20057589-20057709 9.53e-01 120 chr3L:23125846-23125966 9.64e-01 120 chr2R:11219419-11219539 5.54e-04 36_[+1(5.33e-05)]_76 chr3L:10428880-10429000 9.89e-01 120 chr3L:7978831-7978951 9.39e-04 16_[+4(6.23e-06)]_96 chr3R:27826352-27826472 3.06e-01 120 chrX:8677578-8677698 6.66e-01 120 chr2R:20587299-20587419 4.74e-01 120 chr3L:10786062-10786182 4.65e-01 120 chr3R:14386288-14386408 2.87e-02 120 chr2L:7966184-7966304 6.39e-01 120 chr3L:7592235-7592355 5.74e-01 120 chrX:16768908-16769028 2.83e-03 41_[+2(5.79e-06)]_71 chr3R:9335081-9335201 4.31e-06 2_[+2(5.22e-07)]_96_[+1(1.98e-05)]_\ 6 chr3L:15693166-15693286 1.24e-01 120 chr3R:6241343-6241463 5.90e-01 120 chrX:19146462-19146582 9.34e-01 120 chr3L:15174977-15175097 2.14e-01 120 chr2R:4130906-4131026 4.04e-02 120 chr3R:26725194-26725314 3.96e-02 120 chrX:12225425-12225545 9.99e-01 120 chr3L:19446818-19446938 5.63e-01 120 chr3L:1568910-1569030 7.73e-03 108_[+4(2.74e-05)]_4 chr2L:19430438-19430558 4.95e-03 60_[+1(2.53e-06)]_52 chr3R:29699356-29699476 9.76e-01 120 chr2L:7150919-7151039 1.00e+00 120 chr2R:1264234-1264354 1.00e-01 120 chr2R:20996155-20996275 3.84e-04 120 chrX:4540668-4540788 3.63e-01 120 chr2L:10362721-10362841 9.39e-01 120 chr2R:7387217-7387337 1.03e-01 120 chr3R:21613017-21613137 9.58e-01 120 chr2L:5403725-5403845 2.56e-04 41_[+3(4.80e-06)]_71 chr2R:10645527-10645647 2.12e-04 95_[+1(1.38e-05)]_17 chrX:19106981-19107101 2.16e-02 120 chr3L:7962170-7962290 1.14e-02 120 chr3R:23820459-23820579 3.44e-05 57_[+1(2.10e-05)]_23_[+4(3.84e-06)]_\ 24 chr2R:5496109-5496229 1.00e+00 120 chr2L:5445950-5446070 9.95e-01 120 chr3R:26444270-26444390 9.98e-01 120 chr3L:1302773-1302893 9.31e-01 120 chr2L:13203458-13203578 8.84e-01 120 chr2R:16955297-16955417 9.29e-01 120 chr2R:9681923-9682043 7.59e-01 120 chr3L:1534164-1534284 3.27e-01 120 chr3R:30734713-30734833 8.89e-01 120 chr2L:21573251-21573371 7.80e-01 120 chrX:14743902-14744022 9.91e-01 120 chr2L:3805341-3805461 2.96e-01 120 chr3R:13448507-13448627 5.36e-02 120 chrX:14234201-14234321 2.15e-03 47_[+1(1.38e-05)]_65 chr3R:10636167-10636287 9.16e-01 120 chr2L:19792005-19792125 8.77e-01 120 chr3R:4400078-4400198 7.15e-01 120 chrX:14247444-14247564 3.02e-01 120 chr2R:9579016-9579136 7.28e-01 120 chr3L:10337727-10337847 5.37e-01 120 chr3L:13403240-13403360 8.29e-01 120 chrX:6255498-6255618 1.98e-01 120 chr3L:27083936-27084056 2.56e-01 120 chr3L:2237160-2237280 8.79e-01 120 chr3L:10767290-10767410 2.86e-01 120 chr3R:19627894-19628014 7.53e-01 120 chrX:14679278-14679398 8.73e-01 120 chr3R:26717510-26717630 2.66e-01 120 chr3L:25120562-25120682 7.72e-01 120 chr2L:5542339-5542459 8.70e-01 120 chr3R:21594493-21594613 5.87e-01 120 chr3L:16386054-16386174 5.95e-01 120 chr2L:3851433-3851553 1.00e+00 120 chr3L:295120-295240 4.06e-01 120 chr2L:10314516-10314636 4.83e-01 120 chr3L:4553560-4553680 7.53e-01 120 chr3L:2651899-2652019 9.85e-01 120 chr2L:14537754-14537874 3.01e-02 93_[+4(6.31e-05)]_19 chr3L:11350706-11350826 9.93e-01 120 chr3L:8629071-8629191 9.80e-01 120 chr3R:13011346-13011466 7.19e-01 120 chr2L:17588761-17588881 9.95e-01 120 chr2L:9206528-9206648 9.99e-01 120 chrX:2396621-2396741 2.64e-01 120 chr2L:2739953-2740073 1.14e-04 41_[+4(6.23e-06)]_19_[+1(6.54e-06)]_\ 44 chr2L:6649189-6649309 3.32e-01 120 chr3L:10350819-10350939 7.41e-01 120 chr2R:23713259-23713379 2.24e-04 73_[+4(3.81e-05)]_18_[+3(4.80e-06)]_\ 13 chr2L:10970243-10970363 1.96e-01 120 chr3L:9042749-9042869 7.92e-01 120 chr3L:18748494-18748614 9.83e-01 120 chrX:7703082-7703202 9.45e-01 120 chr3R:8362615-8362735 6.75e-01 120 chr3L:22277301-22277421 1.70e-01 120 chr3R:9159938-9160058 7.76e-01 120 chr3R:19014979-19015099 6.64e-01 120 chrX:8125399-8125519 9.62e-01 120 chr3L:8024923-8025043 1.00e+00 120 chr3R:24318510-24318630 2.46e-01 120 chr2R:19874630-19874750 1.17e-01 120 chr2R:5128343-5128463 3.92e-01 120 chr3L:6054936-6055056 6.39e-01 120 chr3R:15652719-15652839 7.61e-01 120 chr3R:11431652-11431772 5.05e-01 120 chr3R:17043232-17043352 9.28e-01 120 chr3L:18402679-18402799 9.20e-01 120 chr3R:11852111-11852231 6.02e-01 120 chr2L:13905400-13905520 7.36e-01 120 chrX:18783648-18783768 3.25e-01 65_[+1(9.16e-05)]_47 chr3L:4254383-4254503 7.92e-01 120 chr2R:21514493-21514613 3.67e-01 120 chr3R:13964627-13964747 4.28e-02 2_[+4(1.97e-05)]_110 chrX:12221692-12221812 3.96e-02 120 chr3L:12734700-12734820 9.80e-01 120 chrX:9119418-9119538 4.57e-02 120 chr3L:12336472-12336592 7.41e-01 120 chr3R:13793422-13793542 5.11e-01 120 chr3L:13917962-13918082 2.89e-01 120 chrX:20423869-20423989 3.88e-02 63_[+4(3.25e-05)]_49 chrX:21324042-21324162 3.02e-03 33_[+3(6.99e-05)]_79 chr2L:15442308-15442428 7.95e-01 120 chr3L:8951216-8951336 9.79e-01 120 chr2L:13296254-13296374 1.58e-10 [+2(5.22e-07)]_8_[+4(6.23e-06)]_25_\ [+1(2.53e-06)]_20_[+3(2.50e-05)]_35 chr3R:9039570-9039690 1.06e-01 120 chrX:8445028-8445148 9.84e-01 120 chrX:11081352-11081472 6.49e-03 86_[+2(5.77e-05)]_26 chr2L:8471806-8471926 8.72e-01 120 chr3L:5813113-5813233 1.05e-01 120 chr2R:5122250-5122370 8.88e-01 120 chr3R:25184152-25184272 9.98e-01 120 chr3R:16573879-16573999 2.82e-02 1_[+3(1.03e-05)]_111 chr2L:10221200-10221320 9.13e-02 120 chr2L:9711293-9711413 5.86e-01 120 chr3R:11235091-11235211 2.82e-03 82_[+4(6.73e-05)]_30 chr3R:16764138-16764258 5.17e-06 48_[+3(9.01e-06)]_6_[+4(5.22e-07)]_\ 50 chrX:12454489-12454609 9.30e-01 120 chrX:15890262-15890382 9.47e-01 120 chr3R:22878533-22878653 6.07e-01 120 chr2L:5520063-5520183 6.86e-02 120 chr2L:11091232-11091352 7.66e-02 120 chrX:16650578-16650698 7.80e-01 120 chr3R:18670601-18670721 9.94e-01 120 chr3L:18109551-18109671 3.10e-03 24_[+4(1.25e-05)]_88 chr3L:10206337-10206457 9.87e-01 120 chr4:671025-671145 1.03e-02 120 chr3R:10893518-10893638 7.30e-03 120 chr3L:6817097-6817217 6.65e-01 120 chr4:1060902-1061022 2.24e-01 120 chr3R:6468132-6468252 9.80e-01 120 chrX:17768276-17768396 2.90e-05 61_[+3(4.73e-05)]_17_[+3(1.25e-06)]_\ [+3(9.01e-06)]_18 chr3R:15644911-15645031 8.19e-02 47_[+3(5.67e-05)]_65 chrX:13764539-13764659 6.17e-02 120 chrX:18921065-18921185 5.97e-01 120 chr3R:8349612-8349732 2.78e-03 82_[+4(3.05e-05)]_30 chr3R:26014406-26014526 3.88e-01 120 chr3R:26012927-26013047 1.00e+00 120 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chr3R:30004783-30004903 4.25e-06 31_[+4(7.71e-05)]_55_[+1(2.53e-06)]_\ 18 chr3R:16837966-16838086 9.50e-01 120 chr2L:8365810-8365930 9.31e-01 120 chr2R:7254359-7254479 9.64e-01 120 chr2R:17590761-17590881 5.15e-01 120 chr3L:16779813-16779933 9.43e-01 120 chrX:16854830-16854950 6.60e-01 120 chr3R:12985905-12986025 2.53e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************