******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/net.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:6646419-6646539 1.0000 120 chr3R:8234055-8234175 1.0000 120 chr3R:18097672-18097792 1.0000 120 chr2L:93151-93271 1.0000 120 chr3L:2795667-2795787 1.0000 120 chr2L:1102353-1102473 1.0000 120 chr3L:751660-751780 1.0000 120 chr4:829948-830068 1.0000 120 chr2L:9231853-9231973 1.0000 120 chr2R:23761506-23761626 1.0000 120 chr2R:10474736-10474856 1.0000 120 chr2R:20646218-20646338 1.0000 120 chr3L:21894928-21895048 1.0000 120 chr2L:15392541-15392661 1.0000 120 chr2R:10548636-10548756 1.0000 120 chr3R:24996632-24996752 1.0000 120 chr3L:21080616-21080736 1.0000 120 chr3L:5365295-5365415 1.0000 120 chr2R:22571983-22572103 1.0000 120 chr3L:19315025-19315145 1.0000 120 chr3R:30794893-30795013 1.0000 120 chr3R:24910216-24910336 1.0000 120 chr3R:19104270-19104390 1.0000 120 chr3R:12406811-12406931 1.0000 120 chr2R:23718650-23718770 1.0000 120 chr3R:21688069-21688189 1.0000 120 chr2R:14569623-14569743 1.0000 120 chr2R:9557578-9557698 1.0000 120 chr2R:18314512-18314632 1.0000 120 chr3R:26464523-26464643 1.0000 120 chr3R:14684060-14684180 1.0000 120 chr2L:2806313-2806433 1.0000 120 chr2R:16920633-16920753 1.0000 120 chr3L:19905604-19905724 1.0000 120 chr3L:21229893-21230013 1.0000 120 chr2R:9138322-9138442 1.0000 120 chr3L:10913404-10913524 1.0000 120 chr2L:20335108-20335228 1.0000 120 chrX:21281264-21281384 1.0000 120 chrX:19878827-19878947 1.0000 120 chr3R:8939848-8939968 1.0000 120 chr2L:563535-563655 1.0000 120 chr2R:17435596-17435716 1.0000 120 chr3R:29064868-29064988 1.0000 120 chrX:1988810-1988930 1.0000 120 chrX:3380298-3380418 1.0000 120 chr3L:787782-787902 1.0000 120 chr2R:17436967-17437087 1.0000 120 chr3R:21733148-21733268 1.0000 120 chr2L:7879648-7879768 1.0000 120 chr3L:19650785-19650905 1.0000 120 chr3R:20284616-20284736 1.0000 120 chr2R:24280513-24280633 1.0000 120 chr2R:12595737-12595857 1.0000 120 chr2L:19193845-19193965 1.0000 120 chr3L:19699805-19699925 1.0000 120 chr3R:14557601-14557721 1.0000 120 chr2R:18300862-18300982 1.0000 120 chr3L:1653029-1653149 1.0000 120 chr2R:24132801-24132921 1.0000 120 chr3R:31961345-31961465 1.0000 120 chr3R:24614265-24614385 1.0000 120 chr3R:25461827-25461947 1.0000 120 chr3L:1464600-1464720 1.0000 120 chr2R:12272894-12273014 1.0000 120 chr2R:23744735-23744855 1.0000 120 chr3R:6214340-6214460 1.0000 120 chr3R:13857468-13857588 1.0000 120 chr3L:10315015-10315135 1.0000 120 chr3R:31443575-31443695 1.0000 120 chrX:21074479-21074599 1.0000 120 chr2R:18355991-18356111 1.0000 120 chr3L:11557305-11557425 1.0000 120 chr3R:20280663-20280783 1.0000 120 chr2L:3012887-3013007 1.0000 120 chr3L:1829697-1829817 1.0000 120 chr2L:10849630-10849750 1.0000 120 chr2L:18866733-18866853 1.0000 120 chr2R:14345488-14345608 1.0000 120 chr2L:20340759-20340879 1.0000 120 chr2R:11323974-11324094 1.0000 120 chr2L:2857944-2858064 1.0000 120 chr3L:6285601-6285721 1.0000 120 chr3L:3612801-3612921 1.0000 120 chr3L:18783616-18783736 1.0000 120 chr3R:31251548-31251668 1.0000 120 chr3L:18790939-18791059 1.0000 120 chrX:1826252-1826372 1.0000 120 chr3R:13808056-13808176 1.0000 120 chr3L:8979116-8979236 1.0000 120 chr3L:4407919-4408039 1.0000 120 chr3R:13806847-13806967 1.0000 120 chr3L:6085382-6085502 1.0000 120 chr3R:31482282-31482402 1.0000 120 chr3R:17081689-17081809 1.0000 120 chrX:8063315-8063435 1.0000 120 chr3R:6102374-6102494 1.0000 120 chr2L:2804692-2804812 1.0000 120 chrX:4970023-4970143 1.0000 120 chr2L:7949913-7950033 1.0000 120 chrX:8122908-8123028 1.0000 120 chr3L:16748545-16748665 1.0000 120 chr2R:20533005-20533125 1.0000 120 chr2R:14031600-14031720 1.0000 120 chr3L:16482284-16482404 1.0000 120 chr2L:6991200-6991320 1.0000 120 chr3R:24906129-24906249 1.0000 120 chr2R:14081693-14081813 1.0000 120 chr3R:30284049-30284169 1.0000 120 chrX:6730776-6730896 1.0000 120 chrX:2289300-2289420 1.0000 120 chr2L:11386512-11386632 1.0000 120 chrX:12000379-12000499 1.0000 120 chrX:2334735-2334855 1.0000 120 chr2L:1911388-1911508 1.0000 120 chr3R:23763789-23763909 1.0000 120 chr2L:3482813-3482933 1.0000 120 chrX:13238708-13238828 1.0000 120 chr3R:9594073-9594193 1.0000 120 chr3L:6458805-6458925 1.0000 120 chr3L:1810400-1810520 1.0000 120 chr2L:13056154-13056274 1.0000 120 chrX:10266160-10266280 1.0000 120 chr3R:9389096-9389216 1.0000 120 chr3L:4721995-4722115 1.0000 120 chr3R:10588830-10588950 1.0000 120 chr3L:13495173-13495293 1.0000 120 chr2L:10677463-10677583 1.0000 120 chr2R:23306103-23306223 1.0000 120 chrX:20468382-20468502 1.0000 120 chr3R:28851993-28852113 1.0000 120 chr3L:4731838-4731958 1.0000 120 chr3L:14534763-14534883 1.0000 120 chr3R:14390579-14390699 1.0000 120 chr2R:13468940-13469060 1.0000 120 chr3R:31680011-31680131 1.0000 120 chr3L:6482985-6483105 1.0000 120 chr2R:14482523-14482643 1.0000 120 chr2R:14783024-14783144 1.0000 120 chr2R:9282796-9282916 1.0000 120 chr3R:14498224-14498344 1.0000 120 chr3L:18241036-18241156 1.0000 120 chr3R:22039552-22039672 1.0000 120 chr3R:24626341-24626461 1.0000 120 chr3R:16154392-16154512 1.0000 120 chr3L:14984650-14984770 1.0000 120 chr3L:2802183-2802303 1.0000 120 chr2L:14995162-14995282 1.0000 120 chr3R:14373983-14374103 1.0000 120 chrX:7097575-7097695 1.0000 120 chr3L:5770475-5770595 1.0000 120 chr3L:10794045-10794165 1.0000 120 chr2L:18341047-18341167 1.0000 120 chr2R:18800306-18800426 1.0000 120 chrX:2107890-2108010 1.0000 120 chr3L:4545839-4545959 1.0000 120 chrX:1083278-1083398 1.0000 120 chr2L:7611709-7611829 1.0000 120 chr3R:22324857-22324977 1.0000 120 chrX:5786593-5786713 1.0000 120 chr2L:18572794-18572914 1.0000 120 chrX:361573-361693 1.0000 120 chr3R:30134820-30134940 1.0000 120 chrX:16966663-16966783 1.0000 120 chr3L:1374609-1374729 1.0000 120 chr3R:11338426-11338546 1.0000 120 chr2L:8270984-8271104 1.0000 120 chr3L:16211214-16211334 1.0000 120 chr2R:21543375-21543495 1.0000 120 chr2L:16687982-16688102 1.0000 120 chrX:17113532-17113652 1.0000 120 chrX:17237589-17237709 1.0000 120 chr3R:18481145-18481265 1.0000 120 chr3R:9159888-9160008 1.0000 120 chr2L:17449859-17449979 1.0000 120 chr3L:8419135-8419255 1.0000 120 chr3L:94199-94319 1.0000 120 chr3R:16119587-16119707 1.0000 120 chrX:16318955-16319075 1.0000 120 chr2R:8322818-8322938 1.0000 120 chr2R:11690781-11690901 1.0000 120 chrX:9460731-9460851 1.0000 120 chr2R:19616272-19616392 1.0000 120 chr2L:19325567-19325687 1.0000 120 chr2R:18305376-18305496 1.0000 120 chrX:13990596-13990716 1.0000 120 chr3R:23293224-23293344 1.0000 120 chr2L:14598408-14598528 1.0000 120 chr2R:24163450-24163570 1.0000 120 chr2R:17820337-17820457 1.0000 120 chrX:6059279-6059399 1.0000 120 chr3L:4623983-4624103 1.0000 120 chr3R:31700386-31700506 1.0000 120 chrX:12677135-12677255 1.0000 120 chr2R:10600558-10600678 1.0000 120 chrX:5968224-5968344 1.0000 120 chr2L:18352930-18353050 1.0000 120 chr3R:27186289-27186409 1.0000 120 chr3L:9848897-9849017 1.0000 120 chr2R:11065647-11065767 1.0000 120 chr2R:18256971-18257091 1.0000 120 chr3L:3879025-3879145 1.0000 120 chrX:9075923-9076043 1.0000 120 chr3R:14025923-14026043 1.0000 120 chr2L:16686584-16686704 1.0000 120 chr3R:25482509-25482629 1.0000 120 chr2L:12513887-12514007 1.0000 120 chr3R:11647002-11647122 1.0000 120 chrX:12015108-12015228 1.0000 120 chr2L:249608-249728 1.0000 120 chr3R:31062467-31062587 1.0000 120 chr2R:16838553-16838673 1.0000 120 chrX:13988960-13989080 1.0000 120 chrX:5897176-5897296 1.0000 120 chr2L:7146022-7146142 1.0000 120 chr3R:30076235-30076355 1.0000 120 chr3R:29875908-29876028 1.0000 120 chr2L:3781529-3781649 1.0000 120 chr2R:10438993-10439113 1.0000 120 chr3L:9675537-9675657 1.0000 120 chr3R:14765578-14765698 1.0000 120 chrX:10104571-10104691 1.0000 120 chr3R:30095991-30096111 1.0000 120 chr3L:8459360-8459480 1.0000 120 chr2L:18645613-18645733 1.0000 120 chr3R:30805274-30805394 1.0000 120 chrX:10718015-10718135 1.0000 120 chr3R:29199887-29200007 1.0000 120 chrX:5082614-5082734 1.0000 120 chrX:2365598-2365718 1.0000 120 chr2R:11614327-11614447 1.0000 120 chr2L:7376289-7376409 1.0000 120 chr3R:31991877-31991997 1.0000 120 chr2R:23067419-23067539 1.0000 120 chr2L:11358579-11358699 1.0000 120 chr2R:9672785-9672905 1.0000 120 chr3R:29055892-29056012 1.0000 120 chr2L:5080653-5080773 1.0000 120 chrX:17886850-17886970 1.0000 120 chr3L:14253517-14253637 1.0000 120 chr2L:19156099-19156219 1.0000 120 chr2R:12733053-12733173 1.0000 120 chr2L:7985073-7985193 1.0000 120 chr2L:18003615-18003735 1.0000 120 chr3R:24031331-24031451 1.0000 120 chr2L:11950010-11950130 1.0000 120 chr3R:14719460-14719580 1.0000 120 chr3R:13861905-13862025 1.0000 120 chrX:7605841-7605961 1.0000 120 chr2L:17778425-17778545 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_net/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/net.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.314 C 0.191 G 0.182 T 0.312 Background letter frequencies (from file dataset with add-one prior applied): A 0.314 C 0.191 G 0.183 T 0.312 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSRGYGGC MEME-1 width = 8 sites = 39 llr = 333 E-value = 3.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::5::2:: pos.-specific C :61:6:27 probability G a44a:683 matrix T ::::42:: bits 2.5 * * 2.2 * * 2.0 * * 1.7 * * * Relative 1.5 ** * ** Entropy 1.2 ** ** ** (12.3 bits) 1.0 ** ** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCGGC consensus GG TA G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22571983-22572103 23 3.88e-06 GTCGACGGCG GCAGCGGC AGCGACCGAC chr3L:21894928-21895048 10 3.88e-06 AACCCGAca gcagcggc agcagcagca chr2L:18866733-18866853 92 5.25e-06 GGCAGGAAGA GGGGCGGC TAGCAGCGGA chr3R:29064868-29064988 86 5.25e-06 ATGAATGCAA GGGGCGGC CATCCGCTCT chr2R:17435596-17435716 13 8.96e-06 GAGCAAGGGG GCGGTGGC GGCGAATGGG chr2L:93151-93271 98 8.96e-06 AAACGAAAGA GCGGTGGC GTCCCAGACG chr3R:31680011-31680131 30 1.77e-05 GTAAAAACTG GCAGTGGC AATCGCTGGT chrX:7605841-7605961 35 2.12e-05 CCAATCAAAT GGGGCGGG GCTTAAATCG chr2R:9672785-9672905 2 2.12e-05 G GGGGTGGC CAATTAGCAA chrX:12677135-12677255 112 2.12e-05 ATGAAGCCAG GGGGCGGG A chr2L:2857944-2858064 55 2.12e-05 AAACTAAATA GGGGCGGG CAATTGCTTA chrX:5082614-5082734 103 2.61e-05 GAGACAATTA GCGGCTGC Gctgcttctt chrX:2289300-2289420 56 2.61e-05 TGTTGTTGTT GCGGCTGC TTTTTTTTTT chr3R:22324857-22324977 71 3.59e-05 TATATGGAAT GGAGTGGC AAAGCTTAAG chr2R:16920633-16920753 106 3.59e-05 ATCCAGGTGG GGAGCGGG CCAAGAT chr3R:14025923-14026043 21 4.01e-05 CTCGCTACGC GCAGCAGC TGACGACTGA chr2R:14031600-14031720 113 4.01e-05 agcagcatca gcagcagc chr2L:6646419-6646539 92 4.01e-05 TGTCTTTGCT GCAGCAGC AGATGTTGTT chr3R:21733148-21733268 85 4.67e-05 CATCGCCTGG GGGGCAGC GTATGATGCC chrX:2107890-2108010 22 5.29e-05 AACCCTCCTC GCAGTGGG CCCTAAAAAG chr2R:19616272-19616392 57 5.76e-05 AGAATCGTTG GCAGCGCC aaaaaaagaa chr3R:14557601-14557721 102 5.76e-05 GATAAACGGG GGGGTGGG CTGCGATTCA chr3R:28851993-28852113 72 6.68e-05 TCTTGCTAAT GCCGCGGC TTACGTTGTA chr3R:14765578-14765698 48 7.72e-05 GGGAGAGGCA GCGGTTGC AGATTCTCTG chr2L:1102353-1102473 94 7.72e-05 TCAGAAGTCG GGAGCAGC GGACTCGAAT chr3R:11338426-11338546 105 8.88e-05 CAGCCGTGTG GCGGTGCC TTAAAAAT chr3R:22039552-22039672 21 8.88e-05 CCTGTGGGTC GCGGCGCG TGACACAGAA chr2L:563535-563655 79 8.88e-05 TCTCGGGATG GGAGTGGG ATGGGTCCGC chrX:20468382-20468502 5 1.20e-04 AGCT GCAGTTGC CCACCGACCG chrX:13238708-13238828 108 1.20e-04 aattgctgtt gcagttgc aattt chr2L:11386512-11386632 68 1.20e-04 ATAAATATTT GCAGCTGG CAGTAAGAGT chr3L:18790939-18791059 29 1.20e-04 TTCTCGTTTC GCAGTTGC TGATTCTCTC chr3R:18097672-18097792 12 1.33e-04 CGCAAATGAT GCAGTGCC TCGTCCGGAT chr2L:10849630-10849750 38 1.45e-04 ACTCACAGTC GCGGTAGG AATATTAGTC chr3R:16154392-16154512 113 1.61e-04 ATGCAGTTGG GGAGCAGG chr2R:12595737-12595857 58 1.61e-04 CTATTTTTAT GCGGCACC GCACAACAGC chr2R:10600558-10600678 83 1.74e-04 TATGAACTTT GGAGCTGG GTTCTTCTTC chr3L:19650785-19650905 37 2.08e-04 ttttttGGTG GGCGTGGC TGGTGTTGCC chr2R:23718650-23718770 96 2.08e-04 TTCCGCGTTG GCAGCACC ACTGGCCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22571983-22572103 3.9e-06 22_[+1]_90 chr3L:21894928-21895048 3.9e-06 9_[+1]_103 chr2L:18866733-18866853 5.3e-06 91_[+1]_21 chr3R:29064868-29064988 5.3e-06 85_[+1]_27 chr2R:17435596-17435716 9e-06 12_[+1]_100 chr2L:93151-93271 9e-06 97_[+1]_15 chr3R:31680011-31680131 1.8e-05 29_[+1]_83 chrX:7605841-7605961 2.1e-05 34_[+1]_78 chr2R:9672785-9672905 2.1e-05 1_[+1]_111 chrX:12677135-12677255 2.1e-05 111_[+1]_1 chr2L:2857944-2858064 2.1e-05 54_[+1]_58 chrX:5082614-5082734 2.6e-05 102_[+1]_10 chrX:2289300-2289420 2.6e-05 55_[+1]_57 chr3R:22324857-22324977 3.6e-05 70_[+1]_42 chr2R:16920633-16920753 3.6e-05 105_[+1]_7 chr3R:14025923-14026043 4e-05 20_[+1]_92 chr2R:14031600-14031720 4e-05 112_[+1] chr2L:6646419-6646539 4e-05 91_[+1]_21 chr3R:21733148-21733268 4.7e-05 84_[+1]_28 chrX:2107890-2108010 5.3e-05 21_[+1]_91 chr2R:19616272-19616392 5.8e-05 56_[+1]_56 chr3R:14557601-14557721 5.8e-05 101_[+1]_11 chr3R:28851993-28852113 6.7e-05 71_[+1]_41 chr3R:14765578-14765698 7.7e-05 47_[+1]_65 chr2L:1102353-1102473 7.7e-05 93_[+1]_19 chr3R:11338426-11338546 8.9e-05 104_[+1]_8 chr3R:22039552-22039672 8.9e-05 20_[+1]_92 chr2L:563535-563655 8.9e-05 78_[+1]_34 chrX:20468382-20468502 0.00012 4_[+1]_108 chrX:13238708-13238828 0.00012 107_[+1]_5 chr2L:11386512-11386632 0.00012 67_[+1]_45 chr3L:18790939-18791059 0.00012 28_[+1]_84 chr3R:18097672-18097792 0.00013 11_[+1]_101 chr2L:10849630-10849750 0.00014 37_[+1]_75 chr3R:16154392-16154512 0.00016 112_[+1] chr2R:12595737-12595857 0.00016 57_[+1]_55 chr2R:10600558-10600678 0.00017 82_[+1]_30 chr3L:19650785-19650905 0.00021 36_[+1]_76 chr2R:23718650-23718770 0.00021 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSRGYGGC width=8 seqs=39 chr2R:22571983-22572103 ( 23) GCAGCGGC 1 chr3L:21894928-21895048 ( 10) GCAGCGGC 1 chr2L:18866733-18866853 ( 92) GGGGCGGC 1 chr3R:29064868-29064988 ( 86) GGGGCGGC 1 chr2R:17435596-17435716 ( 13) GCGGTGGC 1 chr2L:93151-93271 ( 98) GCGGTGGC 1 chr3R:31680011-31680131 ( 30) GCAGTGGC 1 chrX:7605841-7605961 ( 35) GGGGCGGG 1 chr2R:9672785-9672905 ( 2) GGGGTGGC 1 chrX:12677135-12677255 ( 112) GGGGCGGG 1 chr2L:2857944-2858064 ( 55) GGGGCGGG 1 chrX:5082614-5082734 ( 103) GCGGCTGC 1 chrX:2289300-2289420 ( 56) GCGGCTGC 1 chr3R:22324857-22324977 ( 71) GGAGTGGC 1 chr2R:16920633-16920753 ( 106) GGAGCGGG 1 chr3R:14025923-14026043 ( 21) GCAGCAGC 1 chr2R:14031600-14031720 ( 113) GCAGCAGC 1 chr2L:6646419-6646539 ( 92) GCAGCAGC 1 chr3R:21733148-21733268 ( 85) GGGGCAGC 1 chrX:2107890-2108010 ( 22) GCAGTGGG 1 chr2R:19616272-19616392 ( 57) GCAGCGCC 1 chr3R:14557601-14557721 ( 102) GGGGTGGG 1 chr3R:28851993-28852113 ( 72) GCCGCGGC 1 chr3R:14765578-14765698 ( 48) GCGGTTGC 1 chr2L:1102353-1102473 ( 94) GGAGCAGC 1 chr3R:11338426-11338546 ( 105) GCGGTGCC 1 chr3R:22039552-22039672 ( 21) GCGGCGCG 1 chr2L:563535-563655 ( 79) GGAGTGGG 1 chrX:20468382-20468502 ( 5) GCAGTTGC 1 chrX:13238708-13238828 ( 108) GCAGTTGC 1 chr2L:11386512-11386632 ( 68) GCAGCTGG 1 chr3L:18790939-18791059 ( 29) GCAGTTGC 1 chr3R:18097672-18097792 ( 12) GCAGTGCC 1 chr2L:10849630-10849750 ( 38) GCGGTAGG 1 chr3R:16154392-16154512 ( 113) GGAGCAGG 1 chr2R:12595737-12595857 ( 58) GCGGCACC 1 chr2R:10600558-10600678 ( 83) GGAGCTGG 1 chr3L:19650785-19650905 ( 37) GGCGTGGC 1 chr2R:23718650-23718770 ( 96) GCAGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 3.4e-002 -1193 -1193 245 -1193 -1193 169 108 -1193 71 -190 126 -1193 -1193 -1193 245 -1193 -1193 163 -1193 39 -44 -1193 163 -61 -1193 -31 221 -1193 -1193 186 75 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 3.4e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.615385 0.384615 0.000000 0.512821 0.051282 0.435897 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.589744 0.000000 0.410256 0.230769 0.000000 0.564103 0.205128 0.000000 0.153846 0.846154 0.000000 0.000000 0.692308 0.307692 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSRGYGGC MEME-1 regular expression -------------------------------------------------------------------------------- G[CG][AG]G[CT][GAT]G[CG] -------------------------------------------------------------------------------- Time 8.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGAGGG MEME-2 width = 8 sites = 3 llr = 39 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C ::a::::: probability G aa:a:aaa matrix T :::::::: bits 2.5 **** *** 2.2 **** *** 2.0 **** *** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGAGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14765578-14765698 33 2.25e-06 TGTGCTCGAT GGCGAGGG AGAGGCAGCG chr3L:11557305-11557425 68 2.25e-06 CATGTGATGC GGCGAGGG AAACTGGAGG chr2R:18355991-18356111 99 2.25e-06 CTTTGAGTAA GGCGAGGG AGGGAGACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14765578-14765698 2.3e-06 32_[+2]_80 chr3L:11557305-11557425 2.3e-06 67_[+2]_45 chr2R:18355991-18356111 2.3e-06 98_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGAGGG width=8 seqs=3 chr3R:14765578-14765698 ( 33) GGCGAGGG 1 chr3L:11557305-11557425 ( 68) GGCGAGGG 1 chr2R:18355991-18356111 ( 99) GGCGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 4.7e+003 -823 -823 245 -823 -823 -823 245 -823 -823 238 -823 -823 -823 -823 245 -823 167 -823 -823 -823 -823 -823 245 -823 -823 -823 245 -823 -823 -823 245 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGAGGG MEME-2 regular expression -------------------------------------------------------------------------------- GGCGAGGG -------------------------------------------------------------------------------- Time 14.92 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-3 width = 8 sites = 70 llr = 531 E-value = 6.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a8aa6aaa pos.-specific C :2::1::: probability G :1::1::: matrix T ::::2::: bits 2.5 2.2 2.0 1.7 ** *** Relative 1.5 * ** *** Entropy 1.2 * ** *** (10.9 bits) 1.0 **** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17886850-17886970 82 9.45e-05 GCAATGTACA AAAAAAAA GCACACACCA chr3R:29055892-29056012 57 9.45e-05 TTTTTTTCCC AAAAAAAA GAAACATTTA chr2R:11614327-11614447 71 9.45e-05 AGGGCGGGCt aaaaaaaa ataaaataaa chr3L:9675537-9675657 56 9.45e-05 CTATACGGGa aaaaaaaa ccaaaaacaa chr2L:7146022-7146142 40 9.45e-05 AGGTAAATGT AAAAAAAA ATTCATAGGA chrX:13988960-13989080 22 9.45e-05 TAGAATGCAA AAAAAAAA AAAAGGAGAA chr3R:11647002-11647122 65 9.45e-05 aaacgaaaga aaaaaaaa cacaaaatca chr3L:3879025-3879145 46 9.45e-05 CAAACTCACA AAAAAAAA ATTATATTGA chr2R:11065647-11065767 106 9.45e-05 acaaataccc aaaaaaaa aaaaaat chr3L:9848897-9849017 79 9.45e-05 atacgaatgg aaaaaaaa tataaagaag chrX:12677135-12677255 57 9.45e-05 aaaaaaaaaa aaaaaaaa aatgtaaaaa chr2R:24163450-24163570 40 9.45e-05 aaaaaacagt aaaaaaaa aaataaaaac chrX:13990596-13990716 12 9.45e-05 AAACAAAATA AAAAAAAA TTTGCGAAAA chr2R:19616272-19616392 102 9.45e-05 taaataaata aaaaaaaa aatgcgaaaa chrX:17237589-17237709 10 9.45e-05 agaaacata aaaaaaaa taaatataTT chrX:17113532-17113652 36 9.45e-05 CAAGGAACAT AAAAAAAA GGTTTACCAC chr3R:16154392-16154512 76 9.45e-05 agcttgcaaa aaaaaaaa aaatacacaa chr3R:31680011-31680131 54 9.45e-05 TGGTCACACG AAAAAAAA CTCTAGATTT chr3L:13495173-13495293 59 9.45e-05 gcagaagaaa aaaaaaaa aaccaacaga chrX:2334735-2334855 113 9.45e-05 aacgaaaacg aaaaaaaa chrX:8063315-8063435 42 9.45e-05 GAGGCCAACA AAAAAAAA CAACAAAAGC chr2L:10849630-10849750 90 9.45e-05 TATTGAGCAT AAAAAAAA TCAAACAAAA chr3R:31443575-31443695 102 9.45e-05 AAATTTGTTa aaaaaaaa aaaaaaaaaa chr2R:17436967-17437087 87 9.45e-05 TACAAAAATT Aaaaaaaa gagagaagaa chr3L:19905604-19905724 6 9.45e-05 aaaaa aaaaaaaa aCATGGATAT chr2R:16920633-16920753 55 9.45e-05 ACGCACCAAA AAAAAAAA AGAAAAACAT chr2R:20646218-20646338 56 9.45e-05 ACCaaaaaaa aaaaaaaa aagaagaaaa chr2L:9231853-9231973 28 9.45e-05 AACAAGAGCa aaaaaaaa agaaaaaaag chr3L:2795667-2795787 34 9.45e-05 ATTACACATA AAAAAAAA GTAATTGGTA chr2L:7376289-7376409 27 1.88e-04 TGACATTCTT AAAATAAA GGTTTTTGAT chr3R:29875908-29876028 89 1.88e-04 TTTCTCCATA AAAATAAA GTCATGGGAT chr2L:16686584-16686704 5 1.88e-04 TATG AAAATAAA AAACGCCAGA chr3R:9159888-9160008 40 1.88e-04 TTGAATAGGA AAAATAAA AATcatacat chr3L:16211214-16211334 89 1.88e-04 ACATAGCTGT AAAATAAA TGTAAGCCCT chr3R:30134820-30134940 8 1.88e-04 ACCAACA AAAATAAA ACACAACATG chrX:361573-361693 65 1.88e-04 GGTCACAGCA AAAATAAA ACAAAAAATA chr3R:9389096-9389216 103 1.88e-04 TCCAATGAAG AAAATAAA AACCAATGAC chr3L:8979116-8979236 30 1.88e-04 TTCATGGTAC AAAATAAA TATTATTGGT chr3L:3612801-3612921 55 1.88e-04 caagaaaaat aaaataaa ttaTCCCTTT chr3R:20284616-20284736 78 1.88e-04 ATAAAATATA AAAATAAA TATATTTTTC chr2L:7879648-7879768 99 1.88e-04 GGCAAATCGA AAAATAAA ACAAAACCGG chr2R:17435596-17435716 103 1.88e-04 ATATAGCCTC AAAATAAA ACGACTCGTG chr2L:249608-249728 5 3.01e-04 TATA AAAAGAAA AAGATTGCAC chr3R:31700386-31700506 92 3.01e-04 ATCAGATTCC ACAAAAAA TAATATTAAT chr2L:8270984-8271104 46 3.01e-04 CTCAAGCACT ACAAAAAA ATGACTGGCT chr2L:10677463-10677583 113 3.01e-04 GCAATTGTCA AAAAGAAA chr2L:3482813-3482933 5 3.01e-04 CTGA ACAAAAAA ATTTGTATTT chr3R:17081689-17081809 108 3.01e-04 GTCTATAATC ACAAAAAA TCAGT chr3L:18783616-18783736 50 3.01e-04 TTTTTGCGCa aaaagaaa aatatacaat chr2R:18300862-18300982 34 3.01e-04 GCATTGATTT AAAAGAAA AAGATTTAAG chr3L:787782-787902 40 3.01e-04 TTTTAGAAGG ACAAAAAA TCCCTTTTCT chr2R:14569623-14569743 87 3.01e-04 GGCAGATGGC AAAAGAAA GAAACTTTCT chr2R:23761506-23761626 19 3.01e-04 CAAACGATTG AAAAGAAA AATGTAATGC chr3L:14253517-14253637 32 3.58e-04 GTGTGCACTG AAAACAAA AAAGGTATTC chr2L:3781529-3781649 105 3.58e-04 GTTTAAGGTT AAAACAAA TCCAGGTT chr3L:1810400-1810520 26 3.58e-04 CTGAAAATAG AAAACAAA GCGAAAAGCA chr2L:3012887-3013007 85 3.58e-04 GCGTGTCCTA AAAACAAA AACATAAAAA chr3R:14498224-14498344 78 4.16e-04 AAATTTTTCT ACAATAAA TGTATTCTAT chr2R:14345488-14345608 26 4.16e-04 CTTCGTTCAA ACAATAAA GTGTGTTATT chrX:10718015-10718135 61 5.04e-04 TTTGAAAGGA ACAAGAAA TGCAGCACAT chrX:12015108-12015228 90 5.04e-04 CTTTGCATAC AGAAAAAA ACATGTTAAT chr3L:6458805-6458925 18 5.04e-04 ATGTGCACGG AGAAAAAA ATGCACGTAA chrX:19878827-19878947 89 5.04e-04 GCACTTTAAT AGAAAAAA CGTTAACTGA chr3L:21229893-21230013 112 5.04e-04 ACATTTTATT ACAAGAAA T chr3R:24910216-24910336 11 5.04e-04 AGTACACTCG AGAAAAAA CTTTGAGCTC chr2L:14598408-14598528 85 5.39e-04 CTCTTTGTAA ACAACAAA GATAGTTAGT chr3R:16119587-16119707 37 5.39e-04 TGCTTCTGTA ACAACAAA TGATTCCCAA chr3R:11338426-11338546 81 5.39e-04 AAATGAAGTG ACAACAAA AGTAGCCAGC chr3R:13861905-13862025 13 6.81e-04 CGCCAGCACT GAAAAAAA GTATCTTAGC chr3L:5770475-5770595 37 6.81e-04 ATGAAAGAAG GAAAAAAA GACAAAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17886850-17886970 9.5e-05 81_[+3]_31 chr3R:29055892-29056012 9.5e-05 56_[+3]_56 chr2R:11614327-11614447 9.5e-05 70_[+3]_42 chr3L:9675537-9675657 9.5e-05 55_[+3]_57 chr2L:7146022-7146142 9.5e-05 39_[+3]_73 chrX:13988960-13989080 9.5e-05 21_[+3]_91 chr3R:11647002-11647122 9.5e-05 64_[+3]_48 chr3L:3879025-3879145 9.5e-05 45_[+3]_67 chr2R:11065647-11065767 9.5e-05 105_[+3]_7 chr3L:9848897-9849017 9.5e-05 78_[+3]_34 chrX:12677135-12677255 9.5e-05 56_[+3]_56 chr2R:24163450-24163570 9.5e-05 39_[+3]_73 chrX:13990596-13990716 9.5e-05 11_[+3]_101 chr2R:19616272-19616392 9.5e-05 101_[+3]_11 chrX:17237589-17237709 9.5e-05 9_[+3]_103 chrX:17113532-17113652 9.5e-05 35_[+3]_77 chr3R:16154392-16154512 9.5e-05 75_[+3]_37 chr3R:31680011-31680131 9.5e-05 53_[+3]_59 chr3L:13495173-13495293 9.5e-05 58_[+3]_54 chrX:2334735-2334855 9.5e-05 112_[+3] chrX:8063315-8063435 9.5e-05 41_[+3]_71 chr2L:10849630-10849750 9.5e-05 89_[+3]_23 chr3R:31443575-31443695 9.5e-05 101_[+3]_11 chr2R:17436967-17437087 9.5e-05 86_[+3]_26 chr3L:19905604-19905724 9.5e-05 5_[+3]_107 chr2R:16920633-16920753 9.5e-05 54_[+3]_58 chr2R:20646218-20646338 9.5e-05 55_[+3]_57 chr2L:9231853-9231973 9.5e-05 27_[+3]_85 chr3L:2795667-2795787 9.5e-05 33_[+3]_79 chr2L:7376289-7376409 0.00019 26_[+3]_86 chr3R:29875908-29876028 0.00019 88_[+3]_24 chr2L:16686584-16686704 0.00019 4_[+3]_108 chr3R:9159888-9160008 0.00019 39_[+3]_73 chr3L:16211214-16211334 0.00019 88_[+3]_24 chr3R:30134820-30134940 0.00019 7_[+3]_105 chrX:361573-361693 0.00019 64_[+3]_48 chr3R:9389096-9389216 0.00019 102_[+3]_10 chr3L:8979116-8979236 0.00019 29_[+3]_83 chr3L:3612801-3612921 0.00019 54_[+3]_58 chr3R:20284616-20284736 0.00019 77_[+3]_35 chr2L:7879648-7879768 0.00019 98_[+3]_14 chr2R:17435596-17435716 0.00019 102_[+3]_10 chr2L:249608-249728 0.0003 4_[+3]_108 chr3R:31700386-31700506 0.0003 91_[+3]_21 chr2L:8270984-8271104 0.0003 45_[+3]_67 chr2L:10677463-10677583 0.0003 112_[+3] chr2L:3482813-3482933 0.0003 4_[+3]_108 chr3R:17081689-17081809 0.0003 107_[+3]_5 chr3L:18783616-18783736 0.0003 49_[+3]_63 chr2R:18300862-18300982 0.0003 33_[+3]_79 chr3L:787782-787902 0.0003 39_[+3]_73 chr2R:14569623-14569743 0.0003 86_[+3]_26 chr2R:23761506-23761626 0.0003 18_[+3]_94 chr3L:14253517-14253637 0.00036 31_[+3]_81 chr2L:3781529-3781649 0.00036 104_[+3]_8 chr3L:1810400-1810520 0.00036 25_[+3]_87 chr2L:3012887-3013007 0.00036 84_[+3]_28 chr3R:14498224-14498344 0.00042 77_[+3]_35 chr2R:14345488-14345608 0.00042 25_[+3]_87 chrX:10718015-10718135 0.0005 60_[+3]_52 chrX:12015108-12015228 0.0005 89_[+3]_23 chr3L:6458805-6458925 0.0005 17_[+3]_95 chrX:19878827-19878947 0.0005 88_[+3]_24 chr3L:21229893-21230013 0.0005 111_[+3]_1 chr3R:24910216-24910336 0.0005 10_[+3]_102 chr2L:14598408-14598528 0.00054 84_[+3]_28 chr3R:16119587-16119707 0.00054 36_[+3]_76 chr3R:11338426-11338546 0.00054 80_[+3]_32 chr3R:13861905-13862025 0.00068 12_[+3]_100 chr3L:5770475-5770595 0.00068 36_[+3]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=70 chrX:17886850-17886970 ( 82) AAAAAAAA 1 chr3R:29055892-29056012 ( 57) AAAAAAAA 1 chr2R:11614327-11614447 ( 71) AAAAAAAA 1 chr3L:9675537-9675657 ( 56) AAAAAAAA 1 chr2L:7146022-7146142 ( 40) AAAAAAAA 1 chrX:13988960-13989080 ( 22) AAAAAAAA 1 chr3R:11647002-11647122 ( 65) AAAAAAAA 1 chr3L:3879025-3879145 ( 46) AAAAAAAA 1 chr2R:11065647-11065767 ( 106) AAAAAAAA 1 chr3L:9848897-9849017 ( 79) AAAAAAAA 1 chrX:12677135-12677255 ( 57) AAAAAAAA 1 chr2R:24163450-24163570 ( 40) AAAAAAAA 1 chrX:13990596-13990716 ( 12) AAAAAAAA 1 chr2R:19616272-19616392 ( 102) AAAAAAAA 1 chrX:17237589-17237709 ( 10) AAAAAAAA 1 chrX:17113532-17113652 ( 36) AAAAAAAA 1 chr3R:16154392-16154512 ( 76) AAAAAAAA 1 chr3R:31680011-31680131 ( 54) AAAAAAAA 1 chr3L:13495173-13495293 ( 59) AAAAAAAA 1 chrX:2334735-2334855 ( 113) AAAAAAAA 1 chrX:8063315-8063435 ( 42) AAAAAAAA 1 chr2L:10849630-10849750 ( 90) AAAAAAAA 1 chr3R:31443575-31443695 ( 102) AAAAAAAA 1 chr2R:17436967-17437087 ( 87) AAAAAAAA 1 chr3L:19905604-19905724 ( 6) AAAAAAAA 1 chr2R:16920633-16920753 ( 55) AAAAAAAA 1 chr2R:20646218-20646338 ( 56) AAAAAAAA 1 chr2L:9231853-9231973 ( 28) AAAAAAAA 1 chr3L:2795667-2795787 ( 34) AAAAAAAA 1 chr2L:7376289-7376409 ( 27) AAAATAAA 1 chr3R:29875908-29876028 ( 89) AAAATAAA 1 chr2L:16686584-16686704 ( 5) AAAATAAA 1 chr3R:9159888-9160008 ( 40) AAAATAAA 1 chr3L:16211214-16211334 ( 89) AAAATAAA 1 chr3R:30134820-30134940 ( 8) AAAATAAA 1 chrX:361573-361693 ( 65) AAAATAAA 1 chr3R:9389096-9389216 ( 103) AAAATAAA 1 chr3L:8979116-8979236 ( 30) AAAATAAA 1 chr3L:3612801-3612921 ( 55) AAAATAAA 1 chr3R:20284616-20284736 ( 78) AAAATAAA 1 chr2L:7879648-7879768 ( 99) AAAATAAA 1 chr2R:17435596-17435716 ( 103) AAAATAAA 1 chr2L:249608-249728 ( 5) AAAAGAAA 1 chr3R:31700386-31700506 ( 92) ACAAAAAA 1 chr2L:8270984-8271104 ( 46) ACAAAAAA 1 chr2L:10677463-10677583 ( 113) AAAAGAAA 1 chr2L:3482813-3482933 ( 5) ACAAAAAA 1 chr3R:17081689-17081809 ( 108) ACAAAAAA 1 chr3L:18783616-18783736 ( 50) AAAAGAAA 1 chr2R:18300862-18300982 ( 34) AAAAGAAA 1 chr3L:787782-787902 ( 40) ACAAAAAA 1 chr2R:14569623-14569743 ( 87) AAAAGAAA 1 chr2R:23761506-23761626 ( 19) AAAAGAAA 1 chr3L:14253517-14253637 ( 32) AAAACAAA 1 chr2L:3781529-3781649 ( 105) AAAACAAA 1 chr3L:1810400-1810520 ( 26) AAAACAAA 1 chr2L:3012887-3013007 ( 85) AAAACAAA 1 chr3R:14498224-14498344 ( 78) ACAATAAA 1 chr2R:14345488-14345608 ( 26) ACAATAAA 1 chrX:10718015-10718135 ( 61) ACAAGAAA 1 chrX:12015108-12015228 ( 90) AGAAAAAA 1 chr3L:6458805-6458925 ( 18) AGAAAAAA 1 chrX:19878827-19878947 ( 89) AGAAAAAA 1 chr3L:21229893-21230013 ( 112) ACAAGAAA 1 chr3R:24910216-24910336 ( 11) AGAAAAAA 1 chr2L:14598408-14598528 ( 85) ACAACAAA 1 chr3R:16119587-16119707 ( 37) ACAACAAA 1 chr3R:11338426-11338546 ( 81) ACAACAAA 1 chr3R:13861905-13862025 ( 13) GAAAAAAA 1 chr3L:5770475-5770595 ( 37) GAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 6.1e-004 163 -1277 -267 -1277 130 -16 -167 -1277 167 -1277 -1277 -1277 167 -1277 -1277 -1277 86 -93 -68 -54 167 -1277 -1277 -1277 167 -1277 -1277 -1277 167 -1277 -1277 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 6.1e-004 0.971429 0.000000 0.028571 0.000000 0.771429 0.171429 0.057143 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.100000 0.114286 0.214286 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 regular expression -------------------------------------------------------------------------------- AAAA[AT]AAA -------------------------------------------------------------------------------- Time 21.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCAGCTG MEME-4 width = 8 sites = 10 llr = 108 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::9:3:: pos.-specific C :aa1:71: probability G a:::a:1a matrix T ::::::8: bits 2.5 *** * * 2.2 *** * * 2.0 *** * * 1.7 *** * * Relative 1.5 *** * * Entropy 1.2 ****** * (15.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGCTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14765578-14765698 86 4.18e-06 GTCTTGCAGT GCCAGCTG TCGCTAGCTT chr2R:24280513-24280633 24 4.18e-06 CAGCAACTTC GCCAGCTG GCGGCCATCA chr2R:17435596-17435716 44 4.18e-06 GTGGCCCCCA GCCAGCTG TCCCAGACAA chr2L:6646419-6646539 73 4.18e-06 TTTCCCCTAC GCCAGCTG ATGTCTTTGC chrX:2107890-2108010 106 1.11e-05 TTTGGTTTTT GCCAGATG TTGGGTT chr3R:30794893-30795013 37 1.11e-05 agagCCGGCT GCCAGATG CGCTCCAAAA chr2L:1102353-1102473 48 1.11e-05 agatgcagat gccagatg cggaATTCCC chr3R:11338426-11338546 93 1.61e-05 AACAAAAGTA GCCAGCCG TGTGGCGGTG chrX:6730776-6730896 93 1.61e-05 TGACGTTATC GCCAGCGG ATCGGAGACA chr3L:11557305-11557425 44 1.86e-05 GGCGAACTTT GCCCGCTG TCAGCACATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14765578-14765698 4.2e-06 85_[+4]_27 chr2R:24280513-24280633 4.2e-06 23_[+4]_89 chr2R:17435596-17435716 4.2e-06 43_[+4]_69 chr2L:6646419-6646539 4.2e-06 72_[+4]_40 chrX:2107890-2108010 1.1e-05 105_[+4]_7 chr3R:30794893-30795013 1.1e-05 36_[+4]_76 chr2L:1102353-1102473 1.1e-05 47_[+4]_65 chr3R:11338426-11338546 1.6e-05 92_[+4]_20 chrX:6730776-6730896 1.6e-05 92_[+4]_20 chr3L:11557305-11557425 1.9e-05 43_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAGCTG width=8 seqs=10 chr3R:14765578-14765698 ( 86) GCCAGCTG 1 chr2R:24280513-24280633 ( 24) GCCAGCTG 1 chr2R:17435596-17435716 ( 44) GCCAGCTG 1 chr2L:6646419-6646539 ( 73) GCCAGCTG 1 chrX:2107890-2108010 ( 106) GCCAGATG 1 chr3R:30794893-30795013 ( 37) GCCAGATG 1 chr2L:1102353-1102473 ( 48) GCCAGATG 1 chr3R:11338426-11338546 ( 93) GCCAGCCG 1 chrX:6730776-6730896 ( 93) GCCAGCGG 1 chr3L:11557305-11557425 ( 44) GCCCGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 1.7e+003 -997 -997 245 -997 -997 239 -997 -997 -997 239 -997 -997 152 -93 -997 -997 -997 -997 245 -997 -7 187 -997 -997 -997 -93 -87 136 -997 -997 245 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 0.100000 0.100000 0.800000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-4 regular expression -------------------------------------------------------------------------------- GCCAG[CA]TG -------------------------------------------------------------------------------- Time 27.31 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCCCCC MEME-5 width = 8 sites = 4 llr = 51 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aaaaa probability G :::::::: matrix T ::a::::: bits 2.5 ** ***** 2.2 ** ***** 2.0 ** ***** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24163450-24163570 84 2.89e-06 ACACACCTCA CCTCCCCC ATAAGGCCCA chr2R:14482523-14482643 41 2.89e-06 TTCGCGTTCC CCTCCCCC CCTCTTCCAC chr3R:20280663-20280783 58 2.89e-06 CTGATCAGCC CCTCCCCC ACCCGAGGTA chr2R:23718650-23718770 23 2.89e-06 CATTTTGAAA CCTCCCCC CTAGGCGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24163450-24163570 2.9e-06 83_[+5]_29 chr2R:14482523-14482643 2.9e-06 40_[+5]_72 chr3R:20280663-20280783 2.9e-06 57_[+5]_55 chr2R:23718650-23718770 2.9e-06 22_[+5]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCCCCC width=8 seqs=4 chr2R:24163450-24163570 ( 84) CCTCCCCC 1 chr2R:14482523-14482643 ( 41) CCTCCCCC 1 chr3R:20280663-20280783 ( 58) CCTCCCCC 1 chr2R:23718650-23718770 ( 23) CCTCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.5e+004 -865 238 -865 -865 -865 238 -865 -865 -865 -865 -865 168 -865 238 -865 -865 -865 238 -865 -865 -865 238 -865 -865 -865 238 -865 -865 -865 238 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 regular expression -------------------------------------------------------------------------------- CCTCCCCC -------------------------------------------------------------------------------- Time 33.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6646419-6646539 6.44e-04 72_[+4(4.18e-06)]_11_[+1(4.01e-05)]_\ 21 chr3R:8234055-8234175 1.00e+00 120 chr3R:18097672-18097792 9.45e-04 29_[+5(9.27e-06)]_83 chr2L:93151-93271 6.68e-04 33_[+2(7.71e-05)]_56_[+1(8.96e-06)]_\ 15 chr3L:2795667-2795787 5.12e-01 32_[+3(9.45e-05)]_80 chr2L:1102353-1102473 2.02e-03 47_[+4(1.11e-05)]_38_[+1(7.72e-05)]_\ 19 chr3L:751660-751780 1.03e-01 120 chr4:829948-830068 4.85e-01 120 chr2L:9231853-9231973 1.08e-01 26_[+3(9.45e-05)]_86 chr2R:23761506-23761626 6.44e-01 120 chr2R:10474736-10474856 4.27e-01 120 chr2R:20646218-20646338 1.54e-02 48_[+3(9.45e-05)]_[+3(9.45e-05)]_56 chr3L:21894928-21895048 7.60e-06 9_[+1(3.88e-06)]_1_[+1(4.01e-05)]_\ 29_[+2(1.67e-05)]_4_[+5(9.51e-05)]_45 chr2L:15392541-15392661 8.16e-01 120 chr2R:10548636-10548756 1.45e-01 120 chr3R:24996632-24996752 3.02e-01 120 chr3L:21080616-21080736 9.33e-01 120 chr3L:5365295-5365415 3.00e-01 120 chr2R:22571983-22572103 6.08e-04 22_[+1(3.88e-06)]_90 chr3L:19315025-19315145 9.70e-01 120 chr3R:30794893-30795013 3.67e-04 36_[+4(1.11e-05)]_76 chr3R:24910216-24910336 7.80e-01 120 chr3R:19104270-19104390 7.01e-01 120 chr3R:12406811-12406931 3.47e-03 85_[+5(9.51e-05)]_27 chr2R:23718650-23718770 7.77e-04 22_[+5(2.89e-06)]_90 chr3R:21688069-21688189 9.18e-01 120 chr2R:14569623-14569743 1.64e-02 120 chr2R:9557578-9557698 9.61e-01 120 chr2R:18314512-18314632 8.15e-01 120 chr3R:26464523-26464643 1.27e-01 120 chr3R:14684060-14684180 3.50e-01 120 chr2L:2806313-2806433 3.47e-01 120 chr2R:16920633-16920753 2.81e-04 51_[+3(9.45e-05)]_46_[+1(3.59e-05)]_\ 7 chr3L:19905604-19905724 3.51e-01 [+3(9.45e-05)]_112 chr3L:21229893-21230013 7.18e-01 120 chr2R:9138322-9138442 8.63e-01 120 chr3L:10913404-10913524 8.20e-01 120 chr2L:20335108-20335228 9.95e-01 120 chrX:21281264-21281384 1.45e-01 120 chrX:19878827-19878947 7.93e-01 120 chr3R:8939848-8939968 9.31e-01 120 chr2L:563535-563655 1.86e-02 78_[+1(8.88e-05)]_34 chr2R:17435596-17435716 1.28e-06 12_[+1(8.96e-06)]_23_[+4(4.18e-06)]_\ 69 chr3R:29064868-29064988 1.36e-03 85_[+1(5.25e-06)]_27 chrX:1988810-1988930 5.12e-01 120 chrX:3380298-3380418 2.35e-01 120 chr3L:787782-787902 4.29e-01 120 chr2R:17436967-17437087 2.35e-01 86_[+3(9.45e-05)]_26 chr3R:21733148-21733268 8.47e-03 84_[+1(4.67e-05)]_28 chr2L:7879648-7879768 6.75e-02 120 chr3L:19650785-19650905 8.63e-02 120 chr3R:20284616-20284736 1.68e-01 120 chr2R:24280513-24280633 1.08e-02 23_[+4(4.18e-06)]_89 chr2R:12595737-12595857 8.03e-02 120 chr2L:19193845-19193965 9.99e-01 120 chr3L:19699805-19699925 9.80e-01 120 chr3R:14557601-14557721 3.11e-02 101_[+1(5.76e-05)]_11 chr2R:18300862-18300982 5.96e-01 120 chr3L:1653029-1653149 7.12e-01 120 chr2R:24132801-24132921 5.15e-02 120 chr3R:31961345-31961465 6.10e-02 120 chr3R:24614265-24614385 7.21e-01 120 chr3R:25461827-25461947 7.43e-01 120 chr3L:1464600-1464720 1.08e-01 120 chr2R:12272894-12273014 7.62e-02 36_[+5(9.51e-05)]_76 chr2R:23744735-23744855 9.50e-01 120 chr3R:6214340-6214460 8.57e-01 120 chr3R:13857468-13857588 3.57e-01 120 chr3L:10315015-10315135 4.50e-01 120 chr3R:31443575-31443695 2.15e-01 100_[+3(9.45e-05)]_[+3(9.45e-05)]_4 chrX:21074479-21074599 9.30e-01 120 chr2R:18355991-18356111 1.38e-02 98_[+2(2.25e-06)]_14 chr3L:11557305-11557425 1.18e-04 43_[+4(1.86e-05)]_16_[+2(2.25e-06)]_\ 45 chr3R:20280663-20280783 1.26e-02 57_[+5(2.89e-06)]_55 chr2L:3012887-3013007 2.12e-01 120 chr3L:1829697-1829817 5.61e-01 120 chr2L:10849630-10849750 2.04e-02 89_[+3(9.45e-05)]_23 chr2L:18866733-18866853 1.71e-03 91_[+1(5.25e-06)]_12_[+1(2.12e-05)]_\ 1 chr2R:14345488-14345608 5.50e-01 120 chr2L:20340759-20340879 9.25e-01 120 chr2R:11323974-11324094 7.89e-01 120 chr2L:2857944-2858064 3.70e-03 54_[+1(2.12e-05)]_58 chr3L:6285601-6285721 5.37e-02 108_[+4(6.08e-05)]_4 chr3L:3612801-3612921 5.56e-01 120 chr3L:18783616-18783736 1.52e-01 120 chr3R:31251548-31251668 6.50e-01 120 chr3L:18790939-18791059 2.20e-01 120 chrX:1826252-1826372 9.46e-01 120 chr3R:13808056-13808176 5.32e-01 120 chr3L:8979116-8979236 6.51e-01 120 chr3L:4407919-4408039 6.57e-01 120 chr3R:13806847-13806967 9.81e-01 120 chr3L:6085382-6085502 8.86e-01 120 chr3R:31482282-31482402 7.57e-01 120 chr3R:17081689-17081809 7.37e-01 120 chrX:8063315-8063435 3.00e-02 40_[+3(9.45e-05)]_72 chr3R:6102374-6102494 9.81e-01 120 chr2L:2804692-2804812 9.52e-02 120 chrX:4970023-4970143 9.90e-01 120 chr2L:7949913-7950033 4.82e-01 120 chrX:8122908-8123028 2.36e-01 120 chr3L:16748545-16748665 7.95e-01 120 chr2R:20533005-20533125 1.22e-01 120 chr2R:14031600-14031720 2.25e-02 100_[+1(4.01e-05)]_4_[+1(4.01e-05)] chr3L:16482284-16482404 9.61e-01 120 chr2L:6991200-6991320 3.62e-01 120 chr3R:24906129-24906249 9.94e-01 120 chr2R:14081693-14081813 8.86e-01 120 chr3R:30284049-30284169 5.43e-01 120 chrX:6730776-6730896 8.88e-02 92_[+4(1.61e-05)]_20 chrX:2289300-2289420 4.93e-02 55_[+1(2.61e-05)]_57 chr2L:11386512-11386632 1.87e-01 120 chrX:12000379-12000499 9.25e-01 120 chrX:2334735-2334855 1.16e-02 112_[+3(9.45e-05)] chr2L:1911388-1911508 7.87e-01 120 chr3R:23763789-23763909 3.56e-02 120 chr2L:3482813-3482933 7.39e-01 120 chrX:13238708-13238828 5.17e-01 120 chr3R:9594073-9594193 9.78e-02 120 chr3L:6458805-6458925 7.83e-01 120 chr3L:1810400-1810520 8.47e-03 120 chr2L:13056154-13056274 9.37e-01 120 chrX:10266160-10266280 9.97e-01 120 chr3R:9389096-9389216 1.24e-01 120 chr3L:4721995-4722115 1.00e+00 120 chr3R:10588830-10588950 7.17e-01 120 chr3L:13495173-13495293 4.47e-02 29_[+3(9.45e-05)]_18_[+3(9.45e-05)]_\ 57 chr2L:10677463-10677583 7.29e-01 120 chr2R:23306103-23306223 4.39e-01 120 chrX:20468382-20468502 4.15e-02 120 chr3R:28851993-28852113 1.51e-01 71_[+1(6.68e-05)]_41 chr3L:4731838-4731958 8.53e-01 120 chr3L:14534763-14534883 9.61e-01 120 chr3R:14390579-14390699 7.10e-01 120 chr2R:13468940-13469060 5.02e-01 120 chr3R:31680011-31680131 2.69e-03 29_[+1(1.77e-05)]_16_[+3(9.45e-05)]_\ 59 chr3L:6482985-6483105 1.68e-01 120 chr2R:14482523-14482643 1.05e-02 40_[+5(2.89e-06)]_72 chr2R:14783024-14783144 3.77e-01 120 chr2R:9282796-9282916 2.67e-01 120 chr3R:14498224-14498344 2.73e-01 120 chr3L:18241036-18241156 9.47e-01 120 chr3R:22039552-22039672 4.02e-02 20_[+1(8.88e-05)]_92 chr3R:24626341-24626461 9.39e-01 120 chr3R:16154392-16154512 2.00e-02 72_[+3(9.45e-05)]_40 chr3L:14984650-14984770 8.66e-01 120 chr3L:2802183-2802303 6.00e-01 120 chr2L:14995162-14995282 9.74e-01 120 chr3R:14373983-14374103 9.20e-01 120 chrX:7097575-7097695 5.53e-01 120 chr3L:5770475-5770595 2.09e-03 120 chr3L:10794045-10794165 9.96e-01 120 chr2L:18341047-18341167 9.82e-01 120 chr2R:18800306-18800426 9.99e-01 120 chrX:2107890-2108010 3.63e-04 21_[+1(5.29e-05)]_76_[+4(1.11e-05)]_\ 7 chr3L:4545839-4545959 7.91e-01 120 chrX:1083278-1083398 9.26e-02 120 chr2L:7611709-7611829 8.85e-01 120 chr3R:22324857-22324977 1.18e-01 70_[+1(3.59e-05)]_42 chrX:5786593-5786713 8.55e-01 120 chr2L:18572794-18572914 1.25e-01 120 chrX:361573-361693 5.26e-02 6_[+2(7.71e-05)]_106 chr3R:30134820-30134940 5.46e-01 120 chrX:16966663-16966783 9.99e-01 120 chr3L:1374609-1374729 8.64e-01 120 chr3R:11338426-11338546 8.69e-04 92_[+4(1.61e-05)]_4_[+1(8.88e-05)]_\ 8 chr2L:8270984-8271104 2.01e-01 120 chr3L:16211214-16211334 1.13e-01 120 chr2R:21543375-21543495 1.58e-01 4_[+2(7.71e-05)]_108 chr2L:16687982-16688102 9.34e-01 120 chrX:17113532-17113652 2.84e-01 35_[+3(9.45e-05)]_77 chrX:17237589-17237709 2.60e-01 8_[+3(9.45e-05)]_104 chr3R:18481145-18481265 1.00e+00 120 chr3R:9159888-9160008 6.48e-01 120 chr2L:17449859-17449979 8.69e-01 120 chr3L:8419135-8419255 9.98e-01 120 chr3L:94199-94319 6.03e-01 120 chr3R:16119587-16119707 8.20e-01 120 chrX:16318955-16319075 9.83e-01 120 chr2R:8322818-8322938 4.74e-01 120 chr2R:11690781-11690901 8.76e-01 120 chrX:9460731-9460851 7.04e-01 120 chr2R:19616272-19616392 2.09e-03 56_[+1(5.76e-05)]_36_[+3(9.45e-05)]_\ 12 chr2L:19325567-19325687 9.45e-01 120 chr2R:18305376-18305496 9.09e-01 120 chrX:13990596-13990716 7.70e-02 10_[+3(9.45e-05)]_102 chr3R:23293224-23293344 7.22e-02 120 chr2L:14598408-14598528 2.38e-01 120 chr2R:24163450-24163570 1.01e-03 16_[+3(9.45e-05)]_15_[+3(9.45e-05)]_\ 36_[+5(2.89e-06)]_29 chr2R:17820337-17820457 4.62e-01 120 chrX:6059279-6059399 6.26e-01 120 chr3L:4623983-4624103 9.92e-01 120 chr3R:31700386-31700506 5.31e-01 120 chrX:12677135-12677255 3.13e-05 40_[+3(9.45e-05)]_[+3(9.45e-05)]_\ [+3(9.45e-05)]_47_[+1(2.12e-05)]_1 chr2R:10600558-10600678 1.05e-01 120 chrX:5968224-5968344 9.94e-01 120 chr2L:18352930-18353050 1.00e+00 120 chr3R:27186289-27186409 1.03e-01 120 chr3L:9848897-9849017 2.39e-02 27_[+3(9.45e-05)]_5_[+3(9.45e-05)]_\ 30_[+3(9.45e-05)]_34 chr2R:11065647-11065767 2.77e-02 105_[+3(9.45e-05)]_7 chr2R:18256971-18257091 8.11e-01 120 chr3L:3879025-3879145 4.93e-02 44_[+3(9.45e-05)]_68 chrX:9075923-9076043 4.96e-02 120 chr3R:14025923-14026043 1.45e-01 20_[+1(4.01e-05)]_92 chr2L:16686584-16686704 2.55e-02 120 chr3R:25482509-25482629 5.89e-01 120 chr2L:12513887-12514007 5.24e-01 120 chr3R:11647002-11647122 6.74e-02 63_[+3(9.45e-05)]_49 chrX:12015108-12015228 2.60e-01 120 chr2L:249608-249728 2.73e-01 120 chr3R:31062467-31062587 6.30e-01 120 chr2R:16838553-16838673 9.23e-01 120 chrX:13988960-13989080 2.54e-02 19_[+3(9.45e-05)]_93 chrX:5897176-5897296 6.13e-01 120 chr2L:7146022-7146142 1.22e-01 39_[+3(9.45e-05)]_73 chr3R:30076235-30076355 9.88e-01 120 chr3R:29875908-29876028 2.53e-01 120 chr2L:3781529-3781649 1.72e-01 120 chr2R:10438993-10439113 4.58e-01 120 chr3L:9675537-9675657 1.54e-02 29_[+3(9.45e-05)]_17_[+3(9.45e-05)]_\ 15_[+3(9.45e-05)]_35 chr3R:14765578-14765698 3.33e-06 32_[+2(2.25e-06)]_7_[+1(7.72e-05)]_\ 30_[+4(4.18e-06)]_27 chrX:10104571-10104691 8.94e-01 120 chr3R:30095991-30096111 3.50e-01 120 chr3L:8459360-8459480 9.94e-01 120 chr2L:18645613-18645733 9.92e-01 120 chr3R:30805274-30805394 6.75e-01 120 chrX:10718015-10718135 6.20e-01 120 chr3R:29199887-29200007 5.43e-01 120 chrX:5082614-5082734 1.66e-01 102_[+1(2.61e-05)]_10 chrX:2365598-2365718 8.27e-01 120 chr2R:11614327-11614447 3.12e-02 70_[+3(9.45e-05)]_42 chr2L:7376289-7376409 2.40e-01 120 chr3R:31991877-31991997 9.91e-01 120 chr2R:23067419-23067539 2.44e-01 120 chr2L:11358579-11358699 2.25e-01 120 chr2R:9672785-9672905 3.87e-02 1_[+1(2.12e-05)]_111 chr3R:29055892-29056012 2.02e-01 56_[+3(9.45e-05)]_56 chr2L:5080653-5080773 9.72e-01 120 chrX:17886850-17886970 1.21e-01 80_[+3(9.45e-05)]_18_[+3(9.45e-05)]_\ 6 chr3L:14253517-14253637 4.63e-01 120 chr2L:19156099-19156219 3.80e-01 120 chr2R:12733053-12733173 9.95e-01 120 chr2L:7985073-7985193 7.93e-01 120 chr2L:18003615-18003735 1.00e+00 120 chr3R:24031331-24031451 2.87e-01 120 chr2L:11950010-11950130 3.93e-01 120 chr3R:14719460-14719580 4.22e-01 120 chr3R:13861905-13862025 3.65e-01 120 chrX:7605841-7605961 1.27e-03 34_[+1(2.12e-05)]_78 chr2L:17778425-17778545 2.25e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************