******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/nerfin-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:901581-901701 1.0000 120 chr3R:16456771-16456891 1.0000 120 chrX:15971714-15971834 1.0000 120 chrX:3485976-3486096 1.0000 120 chr3L:6701214-6701334 1.0000 120 chr2L:3130556-3130676 1.0000 120 chr3L:904043-904163 1.0000 120 chr3R:17902380-17902500 1.0000 120 chr3R:24514793-24514913 1.0000 120 chr3L:13137535-13137655 1.0000 120 chr3R:9739898-9740018 1.0000 120 chr3L:6162868-6162988 1.0000 120 chr3R:30880124-30880244 1.0000 120 chr3R:31218164-31218284 1.0000 120 chr3R:30850566-30850686 1.0000 120 chr3L:19871667-19871787 1.0000 120 chr3R:25146799-25146919 1.0000 120 chr3L:19251276-19251396 1.0000 120 chr3R:24580231-24580351 1.0000 120 chr3L:15664338-15664458 1.0000 120 chr3L:15664539-15664659 1.0000 120 chr3R:17811839-17811959 1.0000 120 chr3R:25416505-25416625 1.0000 120 chr2R:9543066-9543186 1.0000 120 chr3R:31739247-31739367 1.0000 120 chrX:14266782-14266902 1.0000 120 chr2L:1390410-1390530 1.0000 120 chr2R:18324671-18324791 1.0000 120 chr2L:9124758-9124878 1.0000 120 chr2L:19586575-19586695 1.0000 120 chr3L:5877651-5877771 1.0000 120 chr3L:18290113-18290233 1.0000 120 chr3L:6942820-6942940 1.0000 120 chr2L:1217330-1217450 1.0000 120 chrX:12076088-12076208 1.0000 120 chr3R:27652270-27652390 1.0000 120 chr3L:15678415-15678535 1.0000 120 chr2R:24727559-24727679 1.0000 120 chr3L:18065582-18065702 1.0000 120 chr2L:1885357-1885477 1.0000 120 chr3R:11692655-11692775 1.0000 120 chr3L:11011747-11011867 1.0000 120 chr3R:5043877-5043997 1.0000 120 chr2R:10234516-10234636 1.0000 120 chr3L:19230964-19231084 1.0000 120 chr3R:5091991-5092111 1.0000 120 chr3L:18273530-18273650 1.0000 120 chr3R:30166534-30166654 1.0000 120 chr3R:13673941-13674061 1.0000 120 chr2R:14959119-14959239 1.0000 120 chr2R:14958384-14958504 1.0000 120 chr3R:27558333-27558453 1.0000 120 chr3L:14103109-14103229 1.0000 120 chrX:19717622-19717742 1.0000 120 chrX:21567932-21568052 1.0000 120 chrX:1944842-1944962 1.0000 120 chr3R:5717109-5717229 1.0000 120 chr3L:5664005-5664125 1.0000 120 chr2R:8236837-8236957 1.0000 120 chr2R:22406064-22406184 1.0000 120 chr3L:912504-912624 1.0000 120 chr3R:31813010-31813130 1.0000 120 chrX:1273482-1273602 1.0000 120 chr2L:9455304-9455424 1.0000 120 chr3R:16517126-16517246 1.0000 120 chrX:9282772-9282892 1.0000 120 chr2R:19356845-19356965 1.0000 120 chr3L:21508096-21508216 1.0000 120 chr2R:7372712-7372832 1.0000 120 chr3R:5212040-5212160 1.0000 120 chr3R:8482682-8482802 1.0000 120 chr3R:5204563-5204683 1.0000 120 chr2R:21038951-21039071 1.0000 120 chrX:5663031-5663151 1.0000 120 chr2R:19450338-19450458 1.0000 120 chr3R:16854630-16854750 1.0000 120 chr3R:22152563-22152683 1.0000 120 chr2L:15426875-15426995 1.0000 120 chrX:7432501-7432621 1.0000 120 chr2L:8303386-8303506 1.0000 120 chr3L:8952988-8953108 1.0000 120 chr3L:19429489-19429609 1.0000 120 chr2L:179164-179284 1.0000 120 chr3L:13965596-13965716 1.0000 120 chr2R:24948923-24949043 1.0000 120 chr3R:17847178-17847298 1.0000 120 chr3L:14660073-14660193 1.0000 120 chr3L:899401-899521 1.0000 120 chr3L:11302935-11303055 1.0000 120 chr3R:17824600-17824720 1.0000 120 chr4:988521-988641 1.0000 120 chr2L:17543004-17543124 1.0000 120 chrX:411417-411537 1.0000 120 chrX:5662123-5662243 1.0000 120 chr3L:6013101-6013221 1.0000 120 chr3L:13311334-13311454 1.0000 120 chr2L:19831562-19831682 1.0000 120 chr2R:14525342-14525462 1.0000 120 chr3R:8206349-8206469 1.0000 120 chrX:3021672-3021792 1.0000 120 chr3R:16705878-16705998 1.0000 120 chrX:11981496-11981616 1.0000 120 chr3R:22217799-22217919 1.0000 120 chr2R:12532055-12532175 1.0000 120 chr3R:7972284-7972404 1.0000 120 chrX:8539029-8539149 1.0000 120 chr3R:15609363-15609483 1.0000 120 chr3R:18699947-18700067 1.0000 120 chrX:14221994-14222114 1.0000 120 chr2L:11168057-11168177 1.0000 120 chr2R:13681548-13681668 1.0000 120 chr3R:20593546-20593666 1.0000 120 chrX:1692655-1692775 1.0000 120 chr3L:13155422-13155542 1.0000 120 chr3R:8715560-8715680 1.0000 120 chr2R:22517494-22517614 1.0000 120 chr2R:7170091-7170211 1.0000 120 chr3L:26986-27106 1.0000 120 chr3R:10456555-10456675 1.0000 120 chr3L:22642415-22642535 1.0000 120 chr3L:4080461-4080581 1.0000 120 chr2L:3426989-3427109 1.0000 120 chr3R:12291988-12292108 1.0000 120 chr2L:15491469-15491589 1.0000 120 chr2R:18514326-18514446 1.0000 120 chr2L:2577329-2577449 1.0000 120 chr2R:22674980-22675100 1.0000 120 chr3L:21210309-21210429 1.0000 120 chr2R:13048582-13048702 1.0000 120 chr2R:13194215-13194335 1.0000 120 chr3L:5997121-5997241 1.0000 120 chr3R:11370439-11370559 1.0000 120 chr2R:20583597-20583717 1.0000 120 chr2R:9549505-9549625 1.0000 120 chr2R:16396013-16396133 1.0000 120 chr3R:18299668-18299788 1.0000 120 chr3L:905435-905555 1.0000 120 chr3R:31938409-31938529 1.0000 120 chr2R:9981682-9981802 1.0000 120 chrX:19248958-19249078 1.0000 120 chrX:8523930-8524050 1.0000 120 chr3R:21807422-21807542 1.0000 120 chr3R:24577421-24577541 1.0000 120 chr3L:1748709-1748829 1.0000 120 chr3R:16245626-16245746 1.0000 120 chr3L:912713-912833 1.0000 120 chr3R:30860640-30860760 1.0000 120 chrX:13787464-13787584 1.0000 120 chr3L:11377840-11377960 1.0000 120 chr2L:19480732-19480852 1.0000 120 chr3R:21642434-21642554 1.0000 120 chr2R:11610292-11610412 1.0000 120 chr3R:9259031-9259151 1.0000 120 chrX:1608815-1608935 1.0000 120 chr2R:10263888-10264008 1.0000 120 chr2L:19902963-19903083 1.0000 120 chr2R:8183366-8183486 1.0000 120 chr3L:15920898-15921018 1.0000 120 chr2L:8366472-8366592 1.0000 120 chr3R:18994893-18995013 1.0000 120 chr3R:11615639-11615759 1.0000 120 chr2L:19790919-19791039 1.0000 120 chr2R:11219896-11220016 1.0000 120 chrX:15816994-15817114 1.0000 120 chr2R:20665733-20665853 1.0000 120 chrX:15817956-15818076 1.0000 120 chr3R:10491442-10491562 1.0000 120 chr2L:3806399-3806519 1.0000 120 chr3L:20310527-20310647 1.0000 120 chr3R:6813395-6813515 1.0000 120 chr3L:21194520-21194640 1.0000 120 chr2R:9503514-9503634 1.0000 120 chr2R:16406138-16406258 1.0000 120 chr3L:11681345-11681465 1.0000 120 chr2L:1449283-1449403 1.0000 120 chr3R:22719422-22719542 1.0000 120 chr2L:12252457-12252577 1.0000 120 chr2L:1256145-1256265 1.0000 120 chr2L:19889338-19889458 1.0000 120 chr2R:24741489-24741609 1.0000 120 chr2R:24948722-24948842 1.0000 120 chr3L:2553662-2553782 1.0000 120 chr3R:30904135-30904255 1.0000 120 chr3R:22634654-22634774 1.0000 120 chr3R:29218472-29218592 1.0000 120 chr3L:4076186-4076306 1.0000 120 chr3L:14262889-14263009 1.0000 120 chr2R:12260305-12260425 1.0000 120 chr3R:19931453-19931573 1.0000 120 chrX:1793906-1794026 1.0000 120 chr2L:10549158-10549278 1.0000 120 chr2L:14973840-14973960 1.0000 120 chr2R:9503742-9503862 1.0000 120 chrX:16330507-16330627 1.0000 120 chr2L:224041-224161 1.0000 120 chr3L:22952649-22952769 1.0000 120 chr3L:16780375-16780495 1.0000 120 chr3L:22373345-22373465 1.0000 120 chr3R:25519590-25519710 1.0000 120 chr2R:13050219-13050339 1.0000 120 chr2R:7373989-7374109 1.0000 120 chr2R:10224560-10224680 1.0000 120 chrX:2394659-2394779 1.0000 120 chr2R:12957385-12957505 1.0000 120 chr3R:16877431-16877551 1.0000 120 chr2R:14482828-14482948 1.0000 120 chr2L:13511614-13511734 1.0000 120 chrX:4549585-4549705 1.0000 120 chr2L:9456388-9456508 1.0000 120 chr2R:20119474-20119594 1.0000 120 chr2L:19809762-19809882 1.0000 120 chr2L:17735367-17735487 1.0000 120 chr3L:1489652-1489772 1.0000 120 chrX:19879984-19880104 1.0000 120 chrX:15823353-15823473 1.0000 120 chr3R:15518378-15518498 1.0000 120 chr3L:13662531-13662651 1.0000 120 chr2R:16335589-16335709 1.0000 120 chr3R:18245326-18245446 1.0000 120 chrX:14266994-14267114 1.0000 120 chrX:15089484-15089604 1.0000 120 chrX:5144695-5144815 1.0000 120 chr3R:10190542-10190662 1.0000 120 chr3R:22411506-22411626 1.0000 120 chr3L:10308489-10308609 1.0000 120 chr3R:24575072-24575192 1.0000 120 chr2R:15378748-15378868 1.0000 120 chr2R:13079607-13079727 1.0000 120 chr3R:16051107-16051227 1.0000 120 chr2R:12742292-12742412 1.0000 120 chr2L:21014695-21014815 1.0000 120 chr3R:6862726-6862846 1.0000 120 chr2L:6185088-6185208 1.0000 120 chr3R:19318643-19318763 1.0000 120 chr2L:14578926-14579046 1.0000 120 chr2L:20561932-20562052 1.0000 120 chr2L:7265155-7265275 1.0000 120 chr3L:22357337-22357457 1.0000 120 chr3R:3790307-3790427 1.0000 120 chr3R:19246329-19246449 1.0000 120 chrX:4191265-4191385 1.0000 120 chr3L:2885064-2885184 1.0000 120 chr3R:10850940-10851060 1.0000 120 chr2R:12979472-12979592 1.0000 120 chr3R:10856713-10856833 1.0000 120 chr3R:18987325-18987445 1.0000 120 chr2L:15435794-15435914 1.0000 120 chr2R:20916243-20916363 1.0000 120 chr2L:6795307-6795427 1.0000 120 chr3L:5691117-5691237 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_nerfin-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/nerfin-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.237 G 0.241 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.237 G 0.241 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RAAATTCC MEME-1 width = 8 sites = 115 llr = 882 E-value = 5.2e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 377a:::: pos.-specific C 2:3:::8a probability G 53:::3:: matrix T ::::a72: bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.2 ** ** Entropy 1.0 ******* (11.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAATTCC consensus AGC GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22357337-22357457 47 1.63e-05 GATTGAAAAG GAAATTCC CAAACAAATG chrX:14266994-14267114 45 1.63e-05 GATCTTTGTT GAAATTCC TATACAAAAA chrX:4549585-4549705 35 1.63e-05 CGGTATCTTC GAAATTCC GCTGCAGAGA chr3R:30904135-30904255 21 1.63e-05 CTGAAATTTG GAAATTCC GTCTCCTGAT chr2R:22674980-22675100 53 1.63e-05 CTTTAAAATT GAAATTCC AGCATTAGGC chr3R:18699947-18700067 73 1.63e-05 TGGCAAAACG GAAATTCC TTAGCACTCT chr2R:14525342-14525462 73 1.63e-05 GTGCATAATT GAAATTCC AGCCTAAGCG chrX:5662123-5662243 22 1.63e-05 CCTTTTAAAG GAAATTCC GTCACACACG chr3L:21508096-21508216 63 1.63e-05 AAAGGCTTTA GAAATTCC AACGCAACTA chr3R:31813010-31813130 21 1.63e-05 TTATTATACT GAAATTCC TACTCAGGAA chr2L:1390410-1390530 108 1.63e-05 ATCGGGCGGG GAAATTCC CAAAA chr3R:24580231-24580351 44 1.63e-05 CAACCGAATT GAAATTCC CTTTGCCATT chr3R:31218164-31218284 57 1.63e-05 ATAAATACCC GAAATTCC TTCACATCGT chr3R:9739898-9740018 65 1.63e-05 CTAACACGTC GAAATTCC ATCGCACTAC chr3R:17902380-17902500 77 1.63e-05 CTTTCGACGG GAAATTCC AACGCATGAC chr2R:20916243-20916363 13 3.14e-05 GAGTGAGAAG GAAATGCC GATGCACaga chr3R:18987325-18987445 55 3.14e-05 GCTCATATTA GAAATGCC ATTACATCGC chr3R:15518378-15518498 15 3.14e-05 ATGCACAGGG GAAATGCC TCAAAAGGCC chr2R:13048582-13048702 41 3.14e-05 AAAGCAGCCA GAAATGCC TGAGGGAATG chr3R:8482682-8482802 15 3.14e-05 TAATAAAAGG GAAATGCC ACCAGGCCAC chr3L:912504-912624 7 3.14e-05 AGTAAT GAAATGCC ATTAAGGGCC chrX:1944842-1944962 38 3.14e-05 TATGTATTGG GAAATGCC CATGCAGGCA chr2R:14958384-14958504 73 3.14e-05 ACGCGCGAGT GAAATGCC GATGCAGAGA chr3R:22411506-22411626 50 6.40e-05 GATTGTGTGA AAAATTCC GTAGCATTCA chr2R:16335589-16335709 72 6.40e-05 AGCACGCGCT GGAATTCC AGCAGCTGTT chrX:15823353-15823473 25 6.40e-05 GGACGAAACT GGAATTCC GCCCTCACAA chrX:16330507-16330627 38 6.40e-05 CCATTAGCAG AAAATTCC TTTGCATTCC chr3R:19931453-19931573 112 6.40e-05 TCAGCATGAG AAAATTCC A chr3R:22719422-22719542 48 6.40e-05 GCTCACTGAT GGAATTCC GCACAGCGCT chr2R:9503514-9503634 25 6.40e-05 TTTTGGTATT GGAATTCC GGAATCCATT chr3R:21807422-21807542 94 6.40e-05 AGTTTGTTGA GGAATTCC AAGTTTGCAG chr2L:2577329-2577449 76 6.40e-05 TAAGTCTACT GGAATTCC GTCCATTGTA chrX:8539029-8539149 73 6.40e-05 ACCCTTCAGA GGAATTCC CCTTTTCCAT chr3R:16705878-16705998 30 6.40e-05 AGTTCTAGAA AAAATTCC TAAACTCCAT chr3L:8952988-8953108 1 6.40e-05 . AAAATTCC TTTGCACTCG chr2R:19356845-19356965 59 6.40e-05 AAACTCTCAC GGAATTCC CATACACTTG chr2L:9455304-9455424 45 6.40e-05 TGGGTGCATA GGAATTCC CTCCCCCCAA chr2R:22406064-22406184 36 6.40e-05 TTGGGCACCG AAAATTCC TAAAGACACC chr3L:18273530-18273650 34 6.40e-05 AAACACTTGA GGAATTCC TTTGCGTTCT chr3R:11692655-11692775 68 6.40e-05 GTTGAACGCA AAAATTCC TTGGTATTTA chr3L:15678415-15678535 96 6.40e-05 GCTTTGTGGG GGAATTCC CCCGGAAGAT chr3R:25416505-25416625 89 6.40e-05 TAACCGATTG AAAATTCC ACCACCGCAT chrX:15971714-15971834 13 6.40e-05 aaaaaaaaaa aaaaTTCC AAATTCCTTC chr2R:12957385-12957505 49 7.88e-05 GAAAATGCTC GACATTCC AGGGCCCAAG chrX:14221994-14222114 22 7.88e-05 ATTTAAAAAT GACATTCC GCTCGATTTG chr3L:6013101-6013221 24 7.88e-05 AAAACAAGTT GACATTCC TTGGCATCCC chr3R:5043877-5043997 16 7.88e-05 ATGTGGCAAA GACATTCC GCCCGTCTGA chr3R:18245326-18245446 109 9.48e-05 GCTAGTTTAT CAAATTCC AATA chr3R:16245626-16245746 19 9.48e-05 TGGGGGGGTG CAAATTCC GGCACGAGAC chr2R:19450338-19450458 46 9.48e-05 AAACAGATGG CAAATTCC TCTATATAAG chr3R:10850940-10851060 84 1.25e-04 CATTTCCGTT GGAATGCC AGCTCTTGGC chrX:4191265-4191385 61 1.25e-04 TTGGGCTGCT GGAATGCC GAATGCTCCT chr2L:20561932-20562052 87 1.25e-04 GCAACGTCGG AAAATGCC GATGCGCGAC chr2R:13079607-13079727 70 1.25e-04 TGGTGCTCCC AAAATGCC GGCAGTAAAT chr3R:22634654-22634774 63 1.25e-04 GCTTACCGCC AAAATGCC GTCAGACCAG chr3L:2553662-2553782 8 1.25e-04 ACCCCTA AAAATGCC GCTACTCCAA chr3R:9259031-9259151 14 1.25e-04 GTTGTATTTT AAAATGCC CCGAAAGAAG chr2R:11610292-11610412 18 1.25e-04 GAGGGCCACG AAAATGCC GCCACTTGCG chr3R:24577421-24577541 47 1.25e-04 CTCTGGCGGC GGAATGCC TAGAGAGTCC chr3L:5997121-5997241 63 1.25e-04 GCTTAGCACA AAAATGCC AGCACATGGG chr3L:19230964-19231084 27 1.25e-04 GAAATTGTTG AAAATGCC GCCCGCCTCT chr2L:17735367-17735487 43 1.57e-04 AATGCGCTTG GAAATTTC TAAAACAAAC chr2L:19480732-19480852 45 1.57e-04 GTGACAATGT GACATGCC GTAACAGGTT chr2R:13194215-13194335 44 1.57e-04 GTGGATGGAT GACATGCC GGCACACGCC chr2L:1885357-1885477 63 1.57e-04 CGTGTGTGTC GAAATTTC TGCGACCTAA chr3L:15664539-15664659 88 1.57e-04 ACGGTGGCGT GAAATTTC GAAACGAATT chrX:1273482-1273602 53 1.73e-04 TTGCGAGGCC AGAATTCC AAAGGGGTGG chr2L:21014695-21014815 81 2.17e-04 AATACACAAA AACATTCC AATCAGCGGC chrX:19879984-19880104 90 2.17e-04 CCATTCAGCA AACATTCC CAAACACCCA chrX:13787464-13787584 49 2.17e-04 ATTGCCATTG CAAATGCC TATGGTCGCA chr3L:22642415-22642535 50 2.17e-04 TAACAACAAA AACATTCC AATGCAATTA chr3L:13155422-13155542 54 2.17e-04 GCACAATGCC CAAATGCC GACACGCGCA chr3L:11302935-11303055 47 2.17e-04 AAAAAAATAC AACATTCC GCTGTGCCAT chr3R:16854630-16854750 63 2.17e-04 TTTGCTTTGC CAAATGCC GCCATTTAGG chr2R:21038951-21039071 27 2.17e-04 TTGTATCTGC AACATTCC ATTACCTGAT chr3L:18065582-18065702 40 2.17e-04 GCAAAGTTTT GGCATTCC GGGAGTTGTC chr2L:1217330-1217450 58 2.17e-04 TTGCCTGCTG CAAATGCC ATTTTAGAAG chr3R:30850566-30850686 59 2.32e-04 CACACGCAAG CGAATTCC CATGCAGCAC chrX:15816994-15817114 27 2.63e-04 AAAAAGAACA CACATTCC CTTATTAAaa chr2L:15491469-15491589 33 2.63e-04 GGGATGCTGC CACATTCC ATCGCTAGTT chr3L:5664005-5664125 57 2.63e-04 gtgtgtgGCA CACATTCC AAcagttgca chr2R:12979472-12979592 80 3.42e-04 AAAAAGCAGC GGAATTTC TTATTtgtgt chr3R:19318643-19318763 94 3.42e-04 GCGGTATTTC AAAATTTC AGCAATTTAT chrX:15089484-15089604 80 3.42e-04 ACAGAGCAGA GGAATTTC AACACCACCA chr2L:19809762-19809882 74 3.42e-04 TGCCATTGAA GGAATTTC ATCGCCGGCA chr3L:22373345-22373465 64 3.42e-04 AGGTACTTGA GGAATTTC TGTGCCTGGT chr3R:18994893-18995013 39 3.42e-04 ATGTGGAAGC GGAATTTC TCCGCCCATT chr3R:8715560-8715680 102 3.42e-04 GTGGCAAGAT AACATGCC TGCAGGGAGG chr3R:30166534-30166654 99 3.42e-04 TGTATGTTCA GGAATTTC TCCGACAGGA chr3L:11011747-11011867 19 3.42e-04 CAGCTGCAGG GGAATTTC GCAGCAAGAT chr3R:27652270-27652390 32 3.42e-04 TGTATCTATC GGCATGCC TTCCTTTTGG chr3L:6942820-6942940 49 3.42e-04 TGTGTGTGCT GGCATGCC GCTGAGAGCG chr3R:27558333-27558453 35 3.58e-04 CTTGAGTGAC GACATTTC GATGGTGGCG chr2L:10549158-10549278 90 3.86e-04 TTAATGTGGC AGCATTCC ATTGTTTTTC chr3L:20310527-20310647 27 3.86e-04 CTTGCTGATG AGCATTCC CTTGTTGTTT chrX:15817956-15818076 88 3.86e-04 CTCACGAATA CGAATGCC TAGAGCAACC chr3R:31739247-31739367 83 3.86e-04 CGACCGCCAC CGAATGCC GATGCTTTTG chr3R:10491442-10491562 62 4.17e-04 GGCATAACGG CACATGCC AAATGGGCAC chr3L:905435-905555 38 4.17e-04 TTCCTCGCCG CACATGCC GCCGTATGAA chr2L:17543004-17543124 64 4.17e-04 TTTTAATGTG CACATGCC GCTGCACTtg chr3R:17824600-17824720 38 4.17e-04 CATTTCGACC CAAATTTC AGTacccaaa chr3L:14660073-14660193 17 4.17e-04 CTTGAGCAAG CAAATTTC CATCATCAAA chr3L:13137535-13137655 12 4.17e-04 CAATCGCACC CACATGCC CATCAACCAT chr3R:15609363-15609483 66 4.64e-04 CGATAGGGCC GGAATGTC CTGCCGGAAT chrX:411417-411537 80 4.64e-04 TGAATATGCA GGAATGTC ATCTAGGCAG chr2R:24948923-24949043 62 4.64e-04 GCAAAGTGCC AAAATGTC GTTTAGCATT chr3L:18290113-18290233 77 5.10e-04 AAAGTGTAAA AGAATTTC CATTGCGACA chr3L:1489652-1489772 3 5.59e-04 TT GGCATTTC CTTCCTCCCC chr2R:12532055-12532175 48 5.59e-04 TGTCAAAATA AACATTTC CATATGGTGG chrX:11981496-11981616 74 5.59e-04 GCTGATCCAC AACATTTC GGACTGGCAA chr3R:17847178-17847298 102 5.59e-04 CAGAATTGGT AACATTTC AACGCAATAT chrX:5663031-5663151 10 5.59e-04 TTGTCGAAC GGCATTTC GCTTGCAACT chrX:9282772-9282892 73 5.59e-04 TAGATGCATC GGCATTTC CAGTGGCGGC chr3L:21194520-21194640 59 5.88e-04 TTGCGGTTTT CGCATGCC TGGCCGAAGA chr3R:10190542-10190662 100 6.04e-04 TTTACATTCG CACATTTC TTTTGGTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22357337-22357457 1.6e-05 46_[+1]_66 chrX:14266994-14267114 1.6e-05 44_[+1]_68 chrX:4549585-4549705 1.6e-05 34_[+1]_78 chr3R:30904135-30904255 1.6e-05 20_[+1]_92 chr2R:22674980-22675100 1.6e-05 52_[+1]_60 chr3R:18699947-18700067 1.6e-05 72_[+1]_40 chr2R:14525342-14525462 1.6e-05 72_[+1]_40 chrX:5662123-5662243 1.6e-05 21_[+1]_91 chr3L:21508096-21508216 1.6e-05 62_[+1]_50 chr3R:31813010-31813130 1.6e-05 20_[+1]_92 chr2L:1390410-1390530 1.6e-05 107_[+1]_5 chr3R:24580231-24580351 1.6e-05 43_[+1]_69 chr3R:31218164-31218284 1.6e-05 56_[+1]_56 chr3R:9739898-9740018 1.6e-05 64_[+1]_48 chr3R:17902380-17902500 1.6e-05 76_[+1]_36 chr2R:20916243-20916363 3.1e-05 12_[+1]_100 chr3R:18987325-18987445 3.1e-05 54_[+1]_58 chr3R:15518378-15518498 3.1e-05 14_[+1]_98 chr2R:13048582-13048702 3.1e-05 40_[+1]_72 chr3R:8482682-8482802 3.1e-05 14_[+1]_98 chr3L:912504-912624 3.1e-05 6_[+1]_106 chrX:1944842-1944962 3.1e-05 37_[+1]_75 chr2R:14958384-14958504 3.1e-05 72_[+1]_40 chr3R:22411506-22411626 6.4e-05 49_[+1]_63 chr2R:16335589-16335709 6.4e-05 71_[+1]_41 chrX:15823353-15823473 6.4e-05 24_[+1]_88 chrX:16330507-16330627 6.4e-05 37_[+1]_75 chr3R:19931453-19931573 6.4e-05 111_[+1]_1 chr3R:22719422-22719542 6.4e-05 47_[+1]_65 chr2R:9503514-9503634 6.4e-05 24_[+1]_88 chr3R:21807422-21807542 6.4e-05 93_[+1]_19 chr2L:2577329-2577449 6.4e-05 75_[+1]_37 chrX:8539029-8539149 6.4e-05 72_[+1]_40 chr3R:16705878-16705998 6.4e-05 29_[+1]_83 chr3L:8952988-8953108 6.4e-05 [+1]_112 chr2R:19356845-19356965 6.4e-05 58_[+1]_54 chr2L:9455304-9455424 6.4e-05 44_[+1]_68 chr2R:22406064-22406184 6.4e-05 35_[+1]_77 chr3L:18273530-18273650 6.4e-05 33_[+1]_79 chr3R:11692655-11692775 6.4e-05 67_[+1]_45 chr3L:15678415-15678535 6.4e-05 95_[+1]_17 chr3R:25416505-25416625 6.4e-05 88_[+1]_24 chrX:15971714-15971834 6.4e-05 12_[+1]_100 chr2R:12957385-12957505 7.9e-05 48_[+1]_64 chrX:14221994-14222114 7.9e-05 21_[+1]_91 chr3L:6013101-6013221 7.9e-05 23_[+1]_89 chr3R:5043877-5043997 7.9e-05 15_[+1]_97 chr3R:18245326-18245446 9.5e-05 108_[+1]_4 chr3R:16245626-16245746 9.5e-05 18_[+1]_94 chr2R:19450338-19450458 9.5e-05 45_[+1]_67 chr3R:10850940-10851060 0.00013 83_[+1]_29 chrX:4191265-4191385 0.00013 60_[+1]_52 chr2L:20561932-20562052 0.00013 86_[+1]_26 chr2R:13079607-13079727 0.00013 69_[+1]_43 chr3R:22634654-22634774 0.00013 62_[+1]_50 chr3L:2553662-2553782 0.00013 7_[+1]_105 chr3R:9259031-9259151 0.00013 13_[+1]_99 chr2R:11610292-11610412 0.00013 17_[+1]_95 chr3R:24577421-24577541 0.00013 46_[+1]_66 chr3L:5997121-5997241 0.00013 62_[+1]_50 chr3L:19230964-19231084 0.00013 26_[+1]_86 chr2L:17735367-17735487 0.00016 42_[+1]_70 chr2L:19480732-19480852 0.00016 44_[+1]_68 chr2R:13194215-13194335 0.00016 43_[+1]_69 chr2L:1885357-1885477 0.00016 62_[+1]_50 chr3L:15664539-15664659 0.00016 87_[+1]_25 chrX:1273482-1273602 0.00017 52_[+1]_60 chr2L:21014695-21014815 0.00022 80_[+1]_32 chrX:19879984-19880104 0.00022 89_[+1]_23 chrX:13787464-13787584 0.00022 48_[+1]_64 chr3L:22642415-22642535 0.00022 49_[+1]_63 chr3L:13155422-13155542 0.00022 53_[+1]_59 chr3L:11302935-11303055 0.00022 46_[+1]_66 chr3R:16854630-16854750 0.00022 62_[+1]_50 chr2R:21038951-21039071 0.00022 26_[+1]_86 chr3L:18065582-18065702 0.00022 39_[+1]_73 chr2L:1217330-1217450 0.00022 57_[+1]_55 chr3R:30850566-30850686 0.00023 58_[+1]_54 chrX:15816994-15817114 0.00026 26_[+1]_86 chr2L:15491469-15491589 0.00026 32_[+1]_80 chr3L:5664005-5664125 0.00026 56_[+1]_56 chr2R:12979472-12979592 0.00034 79_[+1]_33 chr3R:19318643-19318763 0.00034 93_[+1]_19 chrX:15089484-15089604 0.00034 79_[+1]_33 chr2L:19809762-19809882 0.00034 73_[+1]_39 chr3L:22373345-22373465 0.00034 63_[+1]_49 chr3R:18994893-18995013 0.00034 38_[+1]_74 chr3R:8715560-8715680 0.00034 101_[+1]_11 chr3R:30166534-30166654 0.00034 98_[+1]_14 chr3L:11011747-11011867 0.00034 18_[+1]_94 chr3R:27652270-27652390 0.00034 31_[+1]_81 chr3L:6942820-6942940 0.00034 48_[+1]_64 chr3R:27558333-27558453 0.00036 34_[+1]_78 chr2L:10549158-10549278 0.00039 89_[+1]_23 chr3L:20310527-20310647 0.00039 26_[+1]_86 chrX:15817956-15818076 0.00039 87_[+1]_25 chr3R:31739247-31739367 0.00039 82_[+1]_30 chr3R:10491442-10491562 0.00042 61_[+1]_51 chr3L:905435-905555 0.00042 37_[+1]_75 chr2L:17543004-17543124 0.00042 63_[+1]_49 chr3R:17824600-17824720 0.00042 37_[+1]_75 chr3L:14660073-14660193 0.00042 16_[+1]_96 chr3L:13137535-13137655 0.00042 11_[+1]_101 chr3R:15609363-15609483 0.00046 65_[+1]_47 chrX:411417-411537 0.00046 79_[+1]_33 chr2R:24948923-24949043 0.00046 61_[+1]_51 chr3L:18290113-18290233 0.00051 76_[+1]_36 chr3L:1489652-1489772 0.00056 2_[+1]_110 chr2R:12532055-12532175 0.00056 47_[+1]_65 chrX:11981496-11981616 0.00056 73_[+1]_39 chr3R:17847178-17847298 0.00056 101_[+1]_11 chrX:5663031-5663151 0.00056 9_[+1]_103 chrX:9282772-9282892 0.00056 72_[+1]_40 chr3L:21194520-21194640 0.00059 58_[+1]_54 chr3R:10190542-10190662 0.0006 99_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAATTCC width=8 seqs=115 chr3L:22357337-22357457 ( 47) GAAATTCC 1 chrX:14266994-14267114 ( 45) GAAATTCC 1 chrX:4549585-4549705 ( 35) GAAATTCC 1 chr3R:30904135-30904255 ( 21) GAAATTCC 1 chr2R:22674980-22675100 ( 53) GAAATTCC 1 chr3R:18699947-18700067 ( 73) GAAATTCC 1 chr2R:14525342-14525462 ( 73) GAAATTCC 1 chrX:5662123-5662243 ( 22) GAAATTCC 1 chr3L:21508096-21508216 ( 63) GAAATTCC 1 chr3R:31813010-31813130 ( 21) GAAATTCC 1 chr2L:1390410-1390530 ( 108) GAAATTCC 1 chr3R:24580231-24580351 ( 44) GAAATTCC 1 chr3R:31218164-31218284 ( 57) GAAATTCC 1 chr3R:9739898-9740018 ( 65) GAAATTCC 1 chr3R:17902380-17902500 ( 77) GAAATTCC 1 chr2R:20916243-20916363 ( 13) GAAATGCC 1 chr3R:18987325-18987445 ( 55) GAAATGCC 1 chr3R:15518378-15518498 ( 15) GAAATGCC 1 chr2R:13048582-13048702 ( 41) GAAATGCC 1 chr3R:8482682-8482802 ( 15) GAAATGCC 1 chr3L:912504-912624 ( 7) GAAATGCC 1 chrX:1944842-1944962 ( 38) GAAATGCC 1 chr2R:14958384-14958504 ( 73) GAAATGCC 1 chr3R:22411506-22411626 ( 50) AAAATTCC 1 chr2R:16335589-16335709 ( 72) GGAATTCC 1 chrX:15823353-15823473 ( 25) GGAATTCC 1 chrX:16330507-16330627 ( 38) AAAATTCC 1 chr3R:19931453-19931573 ( 112) AAAATTCC 1 chr3R:22719422-22719542 ( 48) GGAATTCC 1 chr2R:9503514-9503634 ( 25) GGAATTCC 1 chr3R:21807422-21807542 ( 94) GGAATTCC 1 chr2L:2577329-2577449 ( 76) GGAATTCC 1 chrX:8539029-8539149 ( 73) GGAATTCC 1 chr3R:16705878-16705998 ( 30) AAAATTCC 1 chr3L:8952988-8953108 ( 1) AAAATTCC 1 chr2R:19356845-19356965 ( 59) GGAATTCC 1 chr2L:9455304-9455424 ( 45) GGAATTCC 1 chr2R:22406064-22406184 ( 36) AAAATTCC 1 chr3L:18273530-18273650 ( 34) GGAATTCC 1 chr3R:11692655-11692775 ( 68) AAAATTCC 1 chr3L:15678415-15678535 ( 96) GGAATTCC 1 chr3R:25416505-25416625 ( 89) AAAATTCC 1 chrX:15971714-15971834 ( 13) AAAATTCC 1 chr2R:12957385-12957505 ( 49) GACATTCC 1 chrX:14221994-14222114 ( 22) GACATTCC 1 chr3L:6013101-6013221 ( 24) GACATTCC 1 chr3R:5043877-5043997 ( 16) GACATTCC 1 chr3R:18245326-18245446 ( 109) CAAATTCC 1 chr3R:16245626-16245746 ( 19) CAAATTCC 1 chr2R:19450338-19450458 ( 46) CAAATTCC 1 chr3R:10850940-10851060 ( 84) GGAATGCC 1 chrX:4191265-4191385 ( 61) GGAATGCC 1 chr2L:20561932-20562052 ( 87) AAAATGCC 1 chr2R:13079607-13079727 ( 70) AAAATGCC 1 chr3R:22634654-22634774 ( 63) AAAATGCC 1 chr3L:2553662-2553782 ( 8) AAAATGCC 1 chr3R:9259031-9259151 ( 14) AAAATGCC 1 chr2R:11610292-11610412 ( 18) AAAATGCC 1 chr3R:24577421-24577541 ( 47) GGAATGCC 1 chr3L:5997121-5997241 ( 63) AAAATGCC 1 chr3L:19230964-19231084 ( 27) AAAATGCC 1 chr2L:17735367-17735487 ( 43) GAAATTTC 1 chr2L:19480732-19480852 ( 45) GACATGCC 1 chr2R:13194215-13194335 ( 44) GACATGCC 1 chr2L:1885357-1885477 ( 63) GAAATTTC 1 chr3L:15664539-15664659 ( 88) GAAATTTC 1 chrX:1273482-1273602 ( 53) AGAATTCC 1 chr2L:21014695-21014815 ( 81) AACATTCC 1 chrX:19879984-19880104 ( 90) AACATTCC 1 chrX:13787464-13787584 ( 49) CAAATGCC 1 chr3L:22642415-22642535 ( 50) AACATTCC 1 chr3L:13155422-13155542 ( 54) CAAATGCC 1 chr3L:11302935-11303055 ( 47) AACATTCC 1 chr3R:16854630-16854750 ( 63) CAAATGCC 1 chr2R:21038951-21039071 ( 27) AACATTCC 1 chr3L:18065582-18065702 ( 40) GGCATTCC 1 chr2L:1217330-1217450 ( 58) CAAATGCC 1 chr3R:30850566-30850686 ( 59) CGAATTCC 1 chrX:15816994-15817114 ( 27) CACATTCC 1 chr2L:15491469-15491589 ( 33) CACATTCC 1 chr3L:5664005-5664125 ( 57) CACATTCC 1 chr2R:12979472-12979592 ( 80) GGAATTTC 1 chr3R:19318643-19318763 ( 94) AAAATTTC 1 chrX:15089484-15089604 ( 80) GGAATTTC 1 chr2L:19809762-19809882 ( 74) GGAATTTC 1 chr3L:22373345-22373465 ( 64) GGAATTTC 1 chr3R:18994893-18995013 ( 39) GGAATTTC 1 chr3R:8715560-8715680 ( 102) AACATGCC 1 chr3R:30166534-30166654 ( 99) GGAATTTC 1 chr3L:11011747-11011867 ( 19) GGAATTTC 1 chr3R:27652270-27652390 ( 32) GGCATGCC 1 chr3L:6942820-6942940 ( 49) GGCATGCC 1 chr3R:27558333-27558453 ( 35) GACATTTC 1 chr2L:10549158-10549278 ( 90) AGCATTCC 1 chr3L:20310527-20310647 ( 27) AGCATTCC 1 chrX:15817956-15818076 ( 88) CGAATGCC 1 chr3R:31739247-31739367 ( 83) CGAATGCC 1 chr3R:10491442-10491562 ( 62) CACATGCC 1 chr3L:905435-905555 ( 38) CACATGCC 1 chr2L:17543004-17543124 ( 64) CACATGCC 1 chr3R:17824600-17824720 ( 38) CAAATTTC 1 chr3L:14660073-14660193 ( 17) CAAATTTC 1 chr3L:13137535-13137655 ( 12) CACATGCC 1 chr3R:15609363-15609483 ( 66) GGAATGTC 1 chrX:411417-411537 ( 80) GGAATGTC 1 chr2R:24948923-24949043 ( 62) AAAATGTC 1 chr3L:18290113-18290233 ( 77) AGAATTTC 1 chr3L:1489652-1489772 ( 3) GGCATTTC 1 chr2R:12532055-12532175 ( 48) AACATTTC 1 chrX:11981496-11981616 ( 74) AACATTTC 1 chr3R:17847178-17847298 ( 102) AACATTTC 1 chrX:5663031-5663151 ( 10) GGCATTTC 1 chrX:9282772-9282892 ( 73) GGCATTTC 1 chr3L:21194520-21194640 ( 59) CGCATGCC 1 chr3R:10190542-10190662 ( 100) CACATTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.62225 E= 5.2e-051 9 -38 116 -1349 138 -1349 41 -1349 145 27 -1349 -1349 194 -1349 -1349 -1349 -1349 -1349 -1349 194 -1349 -1349 45 136 -1349 172 -1349 -26 -1349 208 -1349 -1349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 5.2e-051 0.278261 0.182609 0.539130 0.000000 0.678261 0.000000 0.321739 0.000000 0.713043 0.286957 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.330435 0.669565 0.000000 0.782609 0.000000 0.217391 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATTCC MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG][AC]AT[TG][CT]C -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCCCC MEME-2 width = 8 sites = 39 llr = 348 E-value = 6.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11a::1:2 pos.-specific C 99:aa985 probability G :::::::1 matrix T ::::::22 bits 2.1 ** 1.9 * *** 1.7 ***** 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******* (12.9 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24575072-24575192 110 1.10e-05 TGGCGAAAAT CCACCCCC AAG chrX:2394659-2394779 37 1.10e-05 GCTGCCCGCT CCACCCCC ATCGCCATGC chr3R:25519590-25519710 11 1.10e-05 AGGCTCAGCA CCACCCCC AAAACAGTGC chr3R:10491442-10491562 12 1.10e-05 ACTGCCACGA CCACCCCC TCTGGAGGCC chr3L:19429489-19429609 20 1.10e-05 TGCATGCAAC CCACCCCC TCTGGAACAT chrX:12076088-12076208 74 1.10e-05 GTTGTCTGCA CCACCCCC CCATTTGTAT chr3L:6942820-6942940 2 1.10e-05 C CCACCCCC ATTGCAGTGG chr2L:19586575-19586695 13 1.10e-05 CGAAGCGAAG CCACCCCC ATTTGAATCC chr2R:9543066-9543186 51 1.10e-05 taatgtGTAG CCACCCCC GCAGATTCCA chr3L:19251276-19251396 23 1.10e-05 ACATCAAAAG CCACCCCC GGGTGGATTC chr3R:30850566-30850686 94 1.10e-05 TTCCAATTAA CCACCCCC TCCGATTCAG chr3R:16456771-16456891 7 1.10e-05 CCTTTT CCACCCCC TTAAAAACAG chrX:4191265-4191385 20 2.30e-05 AAAGTGACAG CCACCCCT TAAAAGCAAC chr2L:10549158-10549278 21 2.30e-05 tccacccgat ccaccCCT CGTACCTCGT chr3R:30880124-30880244 23 2.30e-05 ATTGTGAATG CCACCCCT AACTGTAAAT chr2R:22674980-22675100 17 3.51e-05 TTGCGCCGCC CCACCCCA TCTGGTAATC chrX:411417-411537 37 3.51e-05 GAAAGTAAAC CCACCCCA AGGGTGAAAT chr2L:15426875-15426995 108 3.51e-05 CGCAGTGGTC CCACCCCA AAATC chr3L:5664005-5664125 6 3.51e-05 CTAAG CCACCCCA AAAACAAAAA chr3L:15678415-15678535 8 3.51e-05 TGCAGAG CCACCCCA AATCCACGGA chr3L:6701214-6701334 76 3.51e-05 GGCATTTGTT CCACCCCA TCGGTATTTT chr3R:19246329-19246449 43 4.71e-05 CTTTTACCAC CCACCCTC GACAGCAGCC chr3R:17824600-17824720 112 4.71e-05 GGCTCTAAAT CCACCCTC G chr3R:17811839-17811959 39 4.71e-05 AGCCGGCTTT CCACCCTC CAGTTGGCGC chr2R:22406064-22406184 53 5.92e-05 CTAAAGACAC CCACCACC CACCGAGCCG chr3R:30166534-30166654 34 5.92e-05 GAACGTGAAT CCACCACC AATTCGAGTG chrX:3021672-3021792 74 7.03e-05 TTTGGCATTG CCACCCCG ATAAGAATTC chr3R:5043877-5043997 93 7.03e-05 TATAAAGCCT CCACCCCG CATCCTTGGC chrX:1793906-1794026 79 8.24e-05 cggtgcTTTT CAACCCCC GATTCCAGTG chr2R:18514326-18514446 33 8.24e-05 TTTGAACTTT CAACCCCC GAAAGCCACG chr2R:12742292-12742412 92 9.56e-05 TGCATAGAAG CCACCCTT TTCCACGCTC chr3L:14103109-14103229 92 9.56e-05 AGGACGATCG CCACCCTT CCGAAACGGC chr3R:18987325-18987445 99 1.34e-04 GCCGAGCTAA CCACCACT CGGAAAAGTG chrX:19879984-19880104 108 1.34e-04 CAAACACCCA ACACCCCC ACCTG chr3L:1489652-1489772 80 1.34e-04 CTGGCCACTC ACACCCCC TAATGTTTAC chr3L:22642415-22642535 112 1.34e-04 GTAAAAACTA CCACCACT C chr3R:18699947-18700067 5 1.34e-04 AATT CCACCACT CGTCGTGaca chr3R:16705878-16705998 112 1.34e-04 GAATTCGAAA CCACCCTA G chr3R:17847178-17847298 57 1.61e-04 GGTGACCCAT CAACCCCT CGATGTGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24575072-24575192 1.1e-05 109_[+2]_3 chrX:2394659-2394779 1.1e-05 36_[+2]_76 chr3R:25519590-25519710 1.1e-05 10_[+2]_102 chr3R:10491442-10491562 1.1e-05 11_[+2]_101 chr3L:19429489-19429609 1.1e-05 19_[+2]_93 chrX:12076088-12076208 1.1e-05 73_[+2]_39 chr3L:6942820-6942940 1.1e-05 1_[+2]_111 chr2L:19586575-19586695 1.1e-05 12_[+2]_100 chr2R:9543066-9543186 1.1e-05 50_[+2]_62 chr3L:19251276-19251396 1.1e-05 22_[+2]_90 chr3R:30850566-30850686 1.1e-05 93_[+2]_19 chr3R:16456771-16456891 1.1e-05 6_[+2]_106 chrX:4191265-4191385 2.3e-05 19_[+2]_93 chr2L:10549158-10549278 2.3e-05 20_[+2]_92 chr3R:30880124-30880244 2.3e-05 22_[+2]_90 chr2R:22674980-22675100 3.5e-05 16_[+2]_96 chrX:411417-411537 3.5e-05 36_[+2]_76 chr2L:15426875-15426995 3.5e-05 107_[+2]_5 chr3L:5664005-5664125 3.5e-05 5_[+2]_107 chr3L:15678415-15678535 3.5e-05 7_[+2]_105 chr3L:6701214-6701334 3.5e-05 75_[+2]_37 chr3R:19246329-19246449 4.7e-05 42_[+2]_70 chr3R:17824600-17824720 4.7e-05 111_[+2]_1 chr3R:17811839-17811959 4.7e-05 38_[+2]_74 chr2R:22406064-22406184 5.9e-05 52_[+2]_60 chr3R:30166534-30166654 5.9e-05 33_[+2]_79 chrX:3021672-3021792 7e-05 73_[+2]_39 chr3R:5043877-5043997 7e-05 92_[+2]_20 chrX:1793906-1794026 8.2e-05 78_[+2]_34 chr2R:18514326-18514446 8.2e-05 32_[+2]_80 chr2R:12742292-12742412 9.6e-05 91_[+2]_21 chr3L:14103109-14103229 9.6e-05 91_[+2]_21 chr3R:18987325-18987445 0.00013 98_[+2]_14 chrX:19879984-19880104 0.00013 107_[+2]_5 chr3L:1489652-1489772 0.00013 79_[+2]_33 chr3L:22642415-22642535 0.00013 111_[+2]_1 chr3R:18699947-18700067 0.00013 4_[+2]_108 chr3R:16705878-16705998 0.00013 111_[+2]_1 chr3R:17847178-17847298 0.00016 56_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCCCC width=8 seqs=39 chr3R:24575072-24575192 ( 110) CCACCCCC 1 chrX:2394659-2394779 ( 37) CCACCCCC 1 chr3R:25519590-25519710 ( 11) CCACCCCC 1 chr3R:10491442-10491562 ( 12) CCACCCCC 1 chr3L:19429489-19429609 ( 20) CCACCCCC 1 chrX:12076088-12076208 ( 74) CCACCCCC 1 chr3L:6942820-6942940 ( 2) CCACCCCC 1 chr2L:19586575-19586695 ( 13) CCACCCCC 1 chr2R:9543066-9543186 ( 51) CCACCCCC 1 chr3L:19251276-19251396 ( 23) CCACCCCC 1 chr3R:30850566-30850686 ( 94) CCACCCCC 1 chr3R:16456771-16456891 ( 7) CCACCCCC 1 chrX:4191265-4191385 ( 20) CCACCCCT 1 chr2L:10549158-10549278 ( 21) CCACCCCT 1 chr3R:30880124-30880244 ( 23) CCACCCCT 1 chr2R:22674980-22675100 ( 17) CCACCCCA 1 chrX:411417-411537 ( 37) CCACCCCA 1 chr2L:15426875-15426995 ( 108) CCACCCCA 1 chr3L:5664005-5664125 ( 6) CCACCCCA 1 chr3L:15678415-15678535 ( 8) CCACCCCA 1 chr3L:6701214-6701334 ( 76) CCACCCCA 1 chr3R:19246329-19246449 ( 43) CCACCCTC 1 chr3R:17824600-17824720 ( 112) CCACCCTC 1 chr3R:17811839-17811959 ( 39) CCACCCTC 1 chr2R:22406064-22406184 ( 53) CCACCACC 1 chr3R:30166534-30166654 ( 34) CCACCACC 1 chrX:3021672-3021792 ( 74) CCACCCCG 1 chr3R:5043877-5043997 ( 93) CCACCCCG 1 chrX:1793906-1794026 ( 79) CAACCCCC 1 chr2R:18514326-18514446 ( 33) CAACCCCC 1 chr2R:12742292-12742412 ( 92) CCACCCTT 1 chr3L:14103109-14103229 ( 92) CCACCCTT 1 chr3R:18987325-18987445 ( 99) CCACCACT 1 chrX:19879984-19880104 ( 108) ACACCCCC 1 chr3L:1489652-1489772 ( 80) ACACCCCC 1 chr3L:22642415-22642535 ( 112) CCACCACT 1 chr3R:18699947-18700067 ( 5) CCACCACT 1 chr3R:16705878-16705998 ( 112) CCACCCTA 1 chr3R:17847178-17847298 ( 57) CAACCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4203 E= 6.5e-010 -235 200 -1193 -1193 -176 196 -1193 -1193 194 -1193 -1193 -1193 -1193 208 -1193 -1193 -1193 208 -1193 -1193 -103 188 -1193 -1193 -1193 183 -1193 -76 -54 118 -223 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 6.5e-010 0.051282 0.948718 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.128205 0.871795 0.000000 0.000000 0.000000 0.846154 0.000000 0.153846 0.179487 0.538462 0.051282 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 regular expression -------------------------------------------------------------------------------- CCACCCC[CT] -------------------------------------------------------------------------------- Time 13.41 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGKGTGK MEME-3 width = 8 sites = 55 llr = 448 E-value = 1.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::1:1:: probability G 9:a49:a4 matrix T 1a:519:6 bits 2.1 * 1.9 ** * 1.7 ** * 1.5 *** *** Relative 1.2 *** *** Entropy 1.0 *** *** (11.7 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20310527-20310647 113 1.54e-05 GTACGAGCCT GTGTGTGT chr2L:8366472-8366592 64 1.54e-05 GCGTCACGgt gtgtgtgt gcgtgtgtgc chr3L:21210309-21210429 38 1.54e-05 ATCGAACtgt gtgtgtgt gagcgtgtgt chrX:1692655-1692775 81 1.54e-05 CTGCTCTGTT GTGTGTGT TTACCTGGTG chr3R:20593546-20593666 52 1.54e-05 CGCGCGCCCt gtgtgtgt ttgtgcgtgt chrX:14221994-14222114 113 1.54e-05 AAATGCCTAC GTGTGTGT chr3L:5664005-5664125 45 1.54e-05 gtatgtgtgt gtgtgtgt gGCACACATT chr2L:1885357-1885477 54 1.54e-05 CGAATGCTGC GTGTGTGT CGAAATTTCT chrX:12076088-12076208 94 1.54e-05 ATTTGTATGT GTGTGTGT GAGTGCATAA chr2L:1217330-1217450 85 1.54e-05 GATGTTTTAT GTGTGTGT TGACATTTTT chr3L:6942820-6942940 38 1.54e-05 CTCCATCGTT GTGTGTGT GCTGGCATGC chr3R:17811839-17811959 99 1.54e-05 cgttgtccgc gtgtgtgt gtatctgtgt chr2L:13511614-13511734 60 2.97e-05 ATGAAGGGGG GTGGGTGT GAGATTGTCA chr2R:7170091-7170211 1 2.97e-05 . GTGGGTGT CGAGTCCCGC chrX:8539029-8539149 22 2.97e-05 ATTCAagtgc gtgggtgt gtgagtgtgt chr2R:12979472-12979592 94 4.40e-05 TTTCTTATTt gtgtgtgg tgtgcgtgtg chr3L:15920898-15921018 108 4.40e-05 TGGGGCTGCG GTGTGTGG AACTT chr3R:17902380-17902500 42 4.40e-05 CAACGCGATG GTGTGTGG GAATTTTCCA chr2R:13079607-13079727 52 5.72e-05 TCGGCTTCCG GTGGGTGG TGGTGCTCCC chr2R:16335589-16335709 22 5.72e-05 CTTGGTGAAA GTGGGTGG CTCGGGAGAC chr2L:19480732-19480852 79 5.72e-05 CTGACGAATA GTGGGTGG TGCCCTGCGG chrX:13787464-13787584 101 5.72e-05 TGTATGCAAG GTGGGTGG CAATTTTCGG chr2L:17543004-17543124 25 5.72e-05 TATCCTTTTT GTGGGTGG TGGTGGTACA chrX:7432501-7432621 11 5.72e-05 GGGGTTGGCG GTGGGTGG TTGCTTGGGC chr3R:27558333-27558453 105 5.72e-05 TATTTGGGTG GTGGGTGG TGCGGATT chr3L:18065582-18065702 97 5.72e-05 AAGTCGGCGA GTGGGTGG ATTTCTCGGG chr3R:27652270-27652390 3 5.72e-05 CG GTGGGTGG TGGGTTTACG chr3R:25416505-25416625 43 5.72e-05 CAGACCTCCG GTGGGTGG AAGGTCGTGT chr3R:16051107-16051227 82 7.13e-05 GAGTGTGCTA GTGCGTGT ACCGGAATGC chr3L:14262889-14263009 90 7.13e-05 TTATGCTTGT GTGCGTGT GTCTGCGGCT chr2L:12252457-12252577 24 7.13e-05 TTTCCAGCAC GTGCGTGT GTAGGTCGCT chr2R:8236837-8236957 59 7.13e-05 CTTTGTCCGT GTGCGTGT ATGCATCGGC chr3R:21807422-21807542 112 8.43e-05 AAGTTTGCAG GTGCGTGG G chr2R:14482828-14482948 108 1.01e-04 AATTCGGAAG TTGTGTGT TAATG chr3L:21508096-21508216 20 1.01e-04 AGCGAGGTAT TTGTGTGT TTGTGTATAC chr3R:31218164-31218284 93 1.01e-04 TAAGAACTAT TTGTGTGT GAAATAGAAA chr3R:19931453-19931573 20 1.30e-04 CAAGGGACAC GTGTGCGT AATCAGCGTC chr3R:24575072-24575192 2 1.75e-04 A GTGGGCGT AAAGTGGGCG chrX:16330507-16330627 61 1.75e-04 ATTCCCATGG GTGTTTGT ACATAGATAT chr3L:21194520-21194640 42 1.75e-04 CCAAATGCAC GTGTTTGT TGCGGTTTTC chr2R:13194215-13194335 30 1.75e-04 GTCGAAGACG TTGTGTGG ATGGATGACA chr3L:14103109-14103229 59 1.75e-04 GCTTAAACAA GTGGGCGT GAAGGAATCC chr3L:5691117-5691237 24 2.18e-04 CCAACGGAAT GTGTGCGG CCAGAACTGT chr3R:18245326-18245446 65 2.18e-04 CTTTTTACTT TTGGGTGG TGGTGGATTG chr3R:30904135-30904255 93 2.18e-04 TGGCTGCTGG TTGGGTGG TGCACTTGCC chr2R:10263888-10264008 58 2.18e-04 ATTTAACACT TTGGGTGG GGGTTCGATT chr3L:6701214-6701334 36 2.18e-04 ATTGCAAGGG GTGGTTGT TATTATTTGC chrX:8523930-8524050 41 2.46e-04 CTGCATATTG GTGTTTGG TCGCGTGTCA chr3R:5204563-5204683 27 2.46e-04 TTGCGTTTAA GTGTTTGG GTATATTTCG chrX:1608815-1608935 54 2.88e-04 TGCTCGTTAC GTGCGCGT GTTGCGACGC chr3R:5212040-5212160 52 3.34e-04 GTATTTCCCG GTGTGTTT ACGTCAGGGG chr3R:30880124-30880244 48 3.34e-04 AATTGTGGGG GTGCTTGT GTGAGTGTTG chr2L:6795307-6795427 40 3.77e-04 CACACAGGGG GTGGGTTT CACAGGAGAG chr2R:16396013-16396133 79 3.91e-04 GGGTGAATTA GTGGGTGA GGGGTGGCGC chr2L:19902963-19903083 95 4.36e-04 GGGAATCTCG TTGTGCGT TATGCCTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20310527-20310647 1.5e-05 112_[+3] chr2L:8366472-8366592 1.5e-05 63_[+3]_49 chr3L:21210309-21210429 1.5e-05 37_[+3]_75 chrX:1692655-1692775 1.5e-05 80_[+3]_32 chr3R:20593546-20593666 1.5e-05 51_[+3]_61 chrX:14221994-14222114 1.5e-05 112_[+3] chr3L:5664005-5664125 1.5e-05 44_[+3]_68 chr2L:1885357-1885477 1.5e-05 53_[+3]_59 chrX:12076088-12076208 1.5e-05 93_[+3]_19 chr2L:1217330-1217450 1.5e-05 84_[+3]_28 chr3L:6942820-6942940 1.5e-05 37_[+3]_75 chr3R:17811839-17811959 1.5e-05 98_[+3]_14 chr2L:13511614-13511734 3e-05 59_[+3]_53 chr2R:7170091-7170211 3e-05 [+3]_112 chrX:8539029-8539149 3e-05 21_[+3]_91 chr2R:12979472-12979592 4.4e-05 93_[+3]_19 chr3L:15920898-15921018 4.4e-05 107_[+3]_5 chr3R:17902380-17902500 4.4e-05 41_[+3]_71 chr2R:13079607-13079727 5.7e-05 51_[+3]_61 chr2R:16335589-16335709 5.7e-05 21_[+3]_91 chr2L:19480732-19480852 5.7e-05 78_[+3]_34 chrX:13787464-13787584 5.7e-05 100_[+3]_12 chr2L:17543004-17543124 5.7e-05 24_[+3]_88 chrX:7432501-7432621 5.7e-05 10_[+3]_102 chr3R:27558333-27558453 5.7e-05 104_[+3]_8 chr3L:18065582-18065702 5.7e-05 96_[+3]_16 chr3R:27652270-27652390 5.7e-05 2_[+3]_110 chr3R:25416505-25416625 5.7e-05 42_[+3]_70 chr3R:16051107-16051227 7.1e-05 81_[+3]_31 chr3L:14262889-14263009 7.1e-05 89_[+3]_23 chr2L:12252457-12252577 7.1e-05 23_[+3]_89 chr2R:8236837-8236957 7.1e-05 58_[+3]_54 chr3R:21807422-21807542 8.4e-05 111_[+3]_1 chr2R:14482828-14482948 0.0001 107_[+3]_5 chr3L:21508096-21508216 0.0001 19_[+3]_93 chr3R:31218164-31218284 0.0001 92_[+3]_20 chr3R:19931453-19931573 0.00013 19_[+3]_93 chr3R:24575072-24575192 0.00018 1_[+3]_111 chrX:16330507-16330627 0.00018 60_[+3]_52 chr3L:21194520-21194640 0.00018 41_[+3]_71 chr2R:13194215-13194335 0.00018 29_[+3]_83 chr3L:14103109-14103229 0.00018 58_[+3]_54 chr3L:5691117-5691237 0.00022 23_[+3]_89 chr3R:18245326-18245446 0.00022 64_[+3]_48 chr3R:30904135-30904255 0.00022 92_[+3]_20 chr2R:10263888-10264008 0.00022 57_[+3]_55 chr3L:6701214-6701334 0.00022 35_[+3]_77 chrX:8523930-8524050 0.00025 40_[+3]_72 chr3R:5204563-5204683 0.00025 26_[+3]_86 chrX:1608815-1608935 0.00029 53_[+3]_59 chr3R:5212040-5212160 0.00033 51_[+3]_61 chr3R:30880124-30880244 0.00033 47_[+3]_65 chr2L:6795307-6795427 0.00038 39_[+3]_73 chr2R:16396013-16396133 0.00039 78_[+3]_34 chr2L:19902963-19903083 0.00044 94_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGKGTGK width=8 seqs=55 chr3L:20310527-20310647 ( 113) GTGTGTGT 1 chr2L:8366472-8366592 ( 64) GTGTGTGT 1 chr3L:21210309-21210429 ( 38) GTGTGTGT 1 chrX:1692655-1692775 ( 81) GTGTGTGT 1 chr3R:20593546-20593666 ( 52) GTGTGTGT 1 chrX:14221994-14222114 ( 113) GTGTGTGT 1 chr3L:5664005-5664125 ( 45) GTGTGTGT 1 chr2L:1885357-1885477 ( 54) GTGTGTGT 1 chrX:12076088-12076208 ( 94) GTGTGTGT 1 chr2L:1217330-1217450 ( 85) GTGTGTGT 1 chr3L:6942820-6942940 ( 38) GTGTGTGT 1 chr3R:17811839-17811959 ( 99) GTGTGTGT 1 chr2L:13511614-13511734 ( 60) GTGGGTGT 1 chr2R:7170091-7170211 ( 1) GTGGGTGT 1 chrX:8539029-8539149 ( 22) GTGGGTGT 1 chr2R:12979472-12979592 ( 94) GTGTGTGG 1 chr3L:15920898-15921018 ( 108) GTGTGTGG 1 chr3R:17902380-17902500 ( 42) GTGTGTGG 1 chr2R:13079607-13079727 ( 52) GTGGGTGG 1 chr2R:16335589-16335709 ( 22) GTGGGTGG 1 chr2L:19480732-19480852 ( 79) GTGGGTGG 1 chrX:13787464-13787584 ( 101) GTGGGTGG 1 chr2L:17543004-17543124 ( 25) GTGGGTGG 1 chrX:7432501-7432621 ( 11) GTGGGTGG 1 chr3R:27558333-27558453 ( 105) GTGGGTGG 1 chr3L:18065582-18065702 ( 97) GTGGGTGG 1 chr3R:27652270-27652390 ( 3) GTGGGTGG 1 chr3R:25416505-25416625 ( 43) GTGGGTGG 1 chr3R:16051107-16051227 ( 82) GTGCGTGT 1 chr3L:14262889-14263009 ( 90) GTGCGTGT 1 chr2L:12252457-12252577 ( 24) GTGCGTGT 1 chr2R:8236837-8236957 ( 59) GTGCGTGT 1 chr3R:21807422-21807542 ( 112) GTGCGTGG 1 chr2R:14482828-14482948 ( 108) TTGTGTGT 1 chr3L:21508096-21508216 ( 20) TTGTGTGT 1 chr3R:31218164-31218284 ( 93) TTGTGTGT 1 chr3R:19931453-19931573 ( 20) GTGTGCGT 1 chr3R:24575072-24575192 ( 2) GTGGGCGT 1 chrX:16330507-16330627 ( 61) GTGTTTGT 1 chr3L:21194520-21194640 ( 42) GTGTTTGT 1 chr2R:13194215-13194335 ( 30) TTGTGTGG 1 chr3L:14103109-14103229 ( 59) GTGGGCGT 1 chr3L:5691117-5691237 ( 24) GTGTGCGG 1 chr3R:18245326-18245446 ( 65) TTGGGTGG 1 chr3R:30904135-30904255 ( 93) TTGGGTGG 1 chr2R:10263888-10264008 ( 58) TTGGGTGG 1 chr3L:6701214-6701334 ( 36) GTGGTTGT 1 chrX:8523930-8524050 ( 41) GTGTTTGG 1 chr3R:5204563-5204683 ( 27) GTGTTTGG 1 chrX:1608815-1608935 ( 54) GTGCGCGT 1 chr3R:5212040-5212160 ( 52) GTGTGTTT 1 chr3R:30880124-30880244 ( 48) GTGCTTGT 1 chr2L:6795307-6795427 ( 40) GTGGGTTT 1 chr2R:16396013-16396133 ( 79) GTGGGTGA 1 chr2L:19902963-19903083 ( 95) TTGTGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59032 E= 1.5e-007 -1243 -1243 182 -84 -1243 -1243 -1243 194 -1243 -1243 205 -1243 -1243 -90 66 92 -1243 -1243 188 -125 -1243 -112 -1243 178 -1243 -1243 200 -284 -384 -1243 66 121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.5e-007 0.000000 0.000000 0.854545 0.145455 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.127273 0.381818 0.490909 0.000000 0.000000 0.890909 0.109091 0.000000 0.109091 0.000000 0.890909 0.000000 0.000000 0.963636 0.036364 0.018182 0.000000 0.381818 0.600000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGKGTGK MEME-3 regular expression -------------------------------------------------------------------------------- GTG[TG]GTG[TG] -------------------------------------------------------------------------------- Time 19.40 secs. ******************************************************************************** ******************************************************************************** MOTIF WGCAGCTG MEME-4 width = 8 sites = 21 llr = 198 E-value = 7.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 53:a:::: pos.-specific C 1:a::a:: probability G :7::a::a matrix T 3:::::a: bits 2.1 * ** * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.2 ******* Entropy 1.0 ******* (13.6 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCAGCTG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16335589-16335709 80 1.39e-05 CTGGAATTCC AGCAGCTG TTTGGCCATT chrX:15816994-15817114 67 1.39e-05 gaacagaacg agcagCTG CGTGTTGAGT chr3R:16245626-16245746 105 1.39e-05 ccgaggcagc agcagctg cagaggca chrX:9282772-9282892 100 1.39e-05 CGCTATTTCC AGCAGCTG ATTTGTTGTT chr2R:10234516-10234636 41 1.39e-05 GATTTTGCGA AGCAGCTG ACCGGAGCTG chrX:5144695-5144815 41 2.78e-05 GGTGAAAGTT TGCAGCTG GTGGCAGGTA chrX:8523930-8524050 74 2.78e-05 CTGTGCTTGC TGCAGCTG TTTTCCCGAG chr3R:22217799-22217919 49 2.78e-05 AAATCATTGA TGCAGCTG TTACGCCata chr3L:899401-899521 74 2.78e-05 GTTTTGGCAA TGCAGCTG GTACCCCGAA chr2R:21038951-21039071 71 2.78e-05 CCAGTGGAAG TGCAGCTG CTACGTGATT chr3L:11011747-11011867 7 2.78e-05 TTTGAG TGCAGCTG CAGGGGAATT chr3R:10856713-10856833 14 4.29e-05 TATTTCCCCG AACAGCTG ATCATGAGAT chr3R:19246329-19246449 67 4.29e-05 AGCCCCCAGA AACAGCTG TTCGGAAGTA chr2L:19889338-19889458 77 4.29e-05 GGATTCCAGC AACAGCTG ATGGCGATAT chr2L:1256145-1256265 69 4.29e-05 TCCCCGCTGA AACAGCTG ATTTGCCTGC chr3R:18994893-18995013 84 4.29e-05 AACGGTTAGG AACAGCTG TGTGGTTATG chr2R:20583597-20583717 56 4.29e-05 GAAGAACCGC AACAGCTG TCATCTCGCT chr3L:10308489-10308609 63 5.55e-05 TCAGGACGAG CGCAGCTG TTAGACAGCA chr3L:1748709-1748829 41 5.55e-05 TCTAAGTCCG CGCAGCTG CCTGCGGAGT chr3L:901581-901701 70 5.55e-05 CACTATTTTT CGCAGCTG CCAGCCCAAC chr3R:16877431-16877551 108 9.71e-05 CGATTTAGCT GGCAGCTG AATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16335589-16335709 1.4e-05 79_[+4]_33 chrX:15816994-15817114 1.4e-05 66_[+4]_46 chr3R:16245626-16245746 1.4e-05 104_[+4]_8 chrX:9282772-9282892 1.4e-05 99_[+4]_13 chr2R:10234516-10234636 1.4e-05 40_[+4]_72 chrX:5144695-5144815 2.8e-05 40_[+4]_72 chrX:8523930-8524050 2.8e-05 73_[+4]_39 chr3R:22217799-22217919 2.8e-05 48_[+4]_64 chr3L:899401-899521 2.8e-05 73_[+4]_39 chr2R:21038951-21039071 2.8e-05 70_[+4]_42 chr3L:11011747-11011867 2.8e-05 6_[+4]_106 chr3R:10856713-10856833 4.3e-05 13_[+4]_99 chr3R:19246329-19246449 4.3e-05 66_[+4]_46 chr2L:19889338-19889458 4.3e-05 76_[+4]_36 chr2L:1256145-1256265 4.3e-05 68_[+4]_44 chr3R:18994893-18995013 4.3e-05 83_[+4]_29 chr2R:20583597-20583717 4.3e-05 55_[+4]_57 chr3L:10308489-10308609 5.6e-05 62_[+4]_50 chr3L:1748709-1748829 5.6e-05 40_[+4]_72 chr3L:901581-901701 5.6e-05 69_[+4]_43 chr3R:16877431-16877551 9.7e-05 107_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGCAGCTG width=8 seqs=21 chr2R:16335589-16335709 ( 80) AGCAGCTG 1 chrX:15816994-15817114 ( 67) AGCAGCTG 1 chr3R:16245626-16245746 ( 105) AGCAGCTG 1 chrX:9282772-9282892 ( 100) AGCAGCTG 1 chr2R:10234516-10234636 ( 41) AGCAGCTG 1 chrX:5144695-5144815 ( 41) TGCAGCTG 1 chrX:8523930-8524050 ( 74) TGCAGCTG 1 chr3R:22217799-22217919 ( 49) TGCAGCTG 1 chr3L:899401-899521 ( 74) TGCAGCTG 1 chr2R:21038951-21039071 ( 71) TGCAGCTG 1 chr3L:11011747-11011867 ( 7) TGCAGCTG 1 chr3R:10856713-10856833 ( 14) AACAGCTG 1 chr3R:19246329-19246449 ( 67) AACAGCTG 1 chr2L:19889338-19889458 ( 77) AACAGCTG 1 chr2L:1256145-1256265 ( 69) AACAGCTG 1 chr3R:18994893-18995013 ( 84) AACAGCTG 1 chr2R:20583597-20583717 ( 56) AACAGCTG 1 chr3L:10308489-10308609 ( 63) CGCAGCTG 1 chr3L:1748709-1748829 ( 41) CGCAGCTG 1 chr3L:901581-901701 ( 70) CGCAGCTG 1 chr3R:16877431-16877551 ( 108) GGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8872 E= 7.4e+001 100 -73 -234 13 13 -1104 156 -1104 -1104 208 -1104 -1104 194 -1104 -1104 -1104 -1104 -1104 205 -1104 -1104 208 -1104 -1104 -1104 -1104 -1104 194 -1104 -1104 205 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.4e+001 0.523810 0.142857 0.047619 0.285714 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [AT][GA]CAGCTG -------------------------------------------------------------------------------- Time 25.28 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAAMAMA MEME-5 width = 8 sites = 49 llr = 387 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6a6a4a7a pos.-specific C 4:2:6:3: probability G :::::::: matrix T ::2::::: bits 2.1 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.2 * * * * Entropy 1.0 ** ***** (11.4 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACAAA consensus C C A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14266994-14267114 84 1.96e-05 CGATACACTC AAAACAAA AGCAGATCAA chr2L:17735367-17735487 52 1.96e-05 GGAAATTTCT AAAACAAA CACACTCGCT chr2R:22517494-22517614 57 1.96e-05 CCTCAGACAC AAAACAAA TCCACAAAAA chr3L:912504-912624 56 1.96e-05 GGGACCGACT AAAACAAA TACCAAAACA chr3L:5664005-5664125 14 1.96e-05 AGCCACCCCA AAAACAAA AAAAATACCG chr3L:18290113-18290233 61 1.96e-05 AGGAAAAAGG AAAACAAA AGTGTAAAAG chr3L:22357337-22357457 55 3.73e-05 AGGAAATTCC CAAACAAA TGTGTTAGTT chrX:16330507-16330627 19 3.73e-05 TACACAAGTG CAAACAAA GCCATTAGCA chr2L:3806399-3806519 59 3.73e-05 GTAAAAATAA CAAACAAA AATACATGCG chr2R:8236837-8236957 13 3.73e-05 ATTTAAATTA CAAACAAA CCGAAACGCA chr2R:12979472-12979592 66 5.88e-05 AAGGATAATA AAAAAAAA AGCAGCGGAA chr3L:22952649-22952769 86 5.88e-05 AAGCCTAGCC AAAAAAAA CGGCGAATCG chr2R:24948722-24948842 62 5.88e-05 ACAGGCAGAG AAAAAAAA TAAAATCGGA chr3L:21194520-21194640 109 5.88e-05 GGGCGAGCTT AAAAAAAA ACGT chr2L:2577329-2577449 17 5.88e-05 CTCTGATCGG AAAAAAAA CACCCTTAAA chr3L:4080461-4080581 25 5.88e-05 AAACAATCTA AAAAAAAA CAGTTTAATA chr3R:5717109-5717229 13 5.88e-05 TTTTTCGGTA AAAAAAAA TGCGAAAGAG chr3L:5691117-5691237 2 7.66e-05 A AAAACACA ACCACCAACG chr2R:22674980-22675100 89 7.66e-05 CGAGCAACGT AAAACACA ATCTATCCGA chr2R:9543066-9543186 112 7.66e-05 tccACTCGGG AAAACACA T chr2L:6185088-6185208 58 9.62e-05 AAAATGTTTT CAAAAAAA GCATTTTTAC chrX:2394659-2394779 111 9.62e-05 CTCGGACCGA CAAAAAAA CA chr2R:14959119-14959239 102 9.62e-05 TTATGAGCTG CAAAAAAA GTTCTTCGGA chr3L:22642415-22642535 17 1.30e-04 AGCCCGAATG CAAACACA GACACCCAGA chr2R:10234516-10234636 96 1.30e-04 TCGAGTGCCA CAAACACA GTTCGTTCTG chr2L:3130556-3130676 11 1.30e-04 CATCGGTTGA AACACAAA TAAATACTGT chrX:3485976-3486096 98 1.30e-04 CATTCCCATG CAAACACA GTGGTGGGCA chr2L:15435794-15435914 97 1.50e-04 TTCCCACCAA AATACAAA AGCCACCCTG chr2R:20119474-20119594 38 1.50e-04 CGGAGGAAAT AATACAAA AAAGGGTTTT chr3L:912713-912833 72 1.50e-04 TGTTTAATCA AATACAAA TGCATGACAG chrX:8523930-8524050 101 1.50e-04 GGGTTGCAAA AATACAAA TATGTACGTC chrX:19717622-19717742 103 1.66e-04 ATATTCTCAT CACACAAA CTAGATTCTG chr3R:15518378-15518498 95 2.03e-04 TGCATCCTTT AAAAAACA TACAGTAACC chr3L:21210309-21210429 100 2.40e-04 GTGCCTTGTA AACAAAAA TAACTCTGCT chr2R:9503742-9503862 110 2.78e-04 TTGGGTTAGG Aacacaca tag chr2L:1449283-1449403 57 2.78e-04 CGGCAAACGA AATAAAAA CGTAATTTAA chr3R:16854630-16854750 89 2.78e-04 GGGTTGTGCC AATAAAAA AATGATATTT chr2L:21014695-21014815 71 3.13e-04 GACCGAGCCA AATACACA AAAACATTCC chr3L:905435-905555 54 3.13e-04 CCGCCGTATG AATACACA TTCGCTCGAA chr3R:16456771-16456891 102 3.13e-04 TGGCTAACCC CACAAAAA TAAACGTTGC chr2R:12260305-12260425 89 3.47e-04 GCTTTTcaca cacacaca ctcgctacac chr3R:10491442-10491562 79 3.47e-04 CAAATGGGCA CATAAAAA GGATAAAGAA chr2R:9981682-9981802 83 3.47e-04 GCCAAATGGG CATAAAAA ATGGTCCTTG chr2L:11168057-11168177 9 3.47e-04 TTCCCTCA CACACACA CCATCATAAG chr2R:24727559-24727679 2 3.47e-04 a cacacaca ggcacacttg chr3L:14262889-14263009 39 3.63e-04 TATTTCGCCG CATACACA TAAGGAAACT chr3L:4076186-4076306 85 4.17e-04 GAATTCTTTA CACAAACA TTGTTCGATG chr3L:26986-27106 62 4.17e-04 AATAACATGG CACAAACA GGCCCCAAAC chr3L:13965596-13965716 69 4.17e-04 TGCACCCGAT CACAAACA TACACACATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14266994-14267114 2e-05 83_[+5]_29 chr2L:17735367-17735487 2e-05 51_[+5]_61 chr2R:22517494-22517614 2e-05 56_[+5]_56 chr3L:912504-912624 2e-05 55_[+5]_57 chr3L:5664005-5664125 2e-05 13_[+5]_99 chr3L:18290113-18290233 2e-05 60_[+5]_52 chr3L:22357337-22357457 3.7e-05 54_[+5]_58 chrX:16330507-16330627 3.7e-05 18_[+5]_94 chr2L:3806399-3806519 3.7e-05 58_[+5]_54 chr2R:8236837-8236957 3.7e-05 12_[+5]_100 chr2R:12979472-12979592 5.9e-05 65_[+5]_47 chr3L:22952649-22952769 5.9e-05 85_[+5]_27 chr2R:24948722-24948842 5.9e-05 61_[+5]_51 chr3L:21194520-21194640 5.9e-05 108_[+5]_4 chr2L:2577329-2577449 5.9e-05 16_[+5]_96 chr3L:4080461-4080581 5.9e-05 24_[+5]_88 chr3R:5717109-5717229 5.9e-05 12_[+5]_100 chr3L:5691117-5691237 7.7e-05 1_[+5]_111 chr2R:22674980-22675100 7.7e-05 88_[+5]_24 chr2R:9543066-9543186 7.7e-05 111_[+5]_1 chr2L:6185088-6185208 9.6e-05 57_[+5]_55 chrX:2394659-2394779 9.6e-05 110_[+5]_2 chr2R:14959119-14959239 9.6e-05 101_[+5]_11 chr3L:22642415-22642535 0.00013 16_[+5]_96 chr2R:10234516-10234636 0.00013 95_[+5]_17 chr2L:3130556-3130676 0.00013 10_[+5]_102 chrX:3485976-3486096 0.00013 97_[+5]_15 chr2L:15435794-15435914 0.00015 96_[+5]_16 chr2R:20119474-20119594 0.00015 37_[+5]_75 chr3L:912713-912833 0.00015 71_[+5]_41 chrX:8523930-8524050 0.00015 100_[+5]_12 chrX:19717622-19717742 0.00017 102_[+5]_10 chr3R:15518378-15518498 0.0002 94_[+5]_18 chr3L:21210309-21210429 0.00024 99_[+5]_13 chr2R:9503742-9503862 0.00028 109_[+5]_3 chr2L:1449283-1449403 0.00028 56_[+5]_56 chr3R:16854630-16854750 0.00028 88_[+5]_24 chr2L:21014695-21014815 0.00031 70_[+5]_42 chr3L:905435-905555 0.00031 53_[+5]_59 chr3R:16456771-16456891 0.00031 101_[+5]_11 chr2R:12260305-12260425 0.00035 88_[+5]_24 chr3R:10491442-10491562 0.00035 78_[+5]_34 chr2R:9981682-9981802 0.00035 82_[+5]_30 chr2L:11168057-11168177 0.00035 8_[+5]_104 chr2R:24727559-24727679 0.00035 1_[+5]_111 chr3L:14262889-14263009 0.00036 38_[+5]_74 chr3L:4076186-4076306 0.00042 84_[+5]_28 chr3L:26986-27106 0.00042 61_[+5]_51 chr3L:13965596-13965716 0.00042 68_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAAMAMA width=8 seqs=49 chrX:14266994-14267114 ( 84) AAAACAAA 1 chr2L:17735367-17735487 ( 52) AAAACAAA 1 chr2R:22517494-22517614 ( 57) AAAACAAA 1 chr3L:912504-912624 ( 56) AAAACAAA 1 chr3L:5664005-5664125 ( 14) AAAACAAA 1 chr3L:18290113-18290233 ( 61) AAAACAAA 1 chr3L:22357337-22357457 ( 55) CAAACAAA 1 chrX:16330507-16330627 ( 19) CAAACAAA 1 chr2L:3806399-3806519 ( 59) CAAACAAA 1 chr2R:8236837-8236957 ( 13) CAAACAAA 1 chr2R:12979472-12979592 ( 66) AAAAAAAA 1 chr3L:22952649-22952769 ( 86) AAAAAAAA 1 chr2R:24948722-24948842 ( 62) AAAAAAAA 1 chr3L:21194520-21194640 ( 109) AAAAAAAA 1 chr2L:2577329-2577449 ( 17) AAAAAAAA 1 chr3L:4080461-4080581 ( 25) AAAAAAAA 1 chr3R:5717109-5717229 ( 13) AAAAAAAA 1 chr3L:5691117-5691237 ( 2) AAAACACA 1 chr2R:22674980-22675100 ( 89) AAAACACA 1 chr2R:9543066-9543186 ( 112) AAAACACA 1 chr2L:6185088-6185208 ( 58) CAAAAAAA 1 chrX:2394659-2394779 ( 111) CAAAAAAA 1 chr2R:14959119-14959239 ( 102) CAAAAAAA 1 chr3L:22642415-22642535 ( 17) CAAACACA 1 chr2R:10234516-10234636 ( 96) CAAACACA 1 chr2L:3130556-3130676 ( 11) AACACAAA 1 chrX:3485976-3486096 ( 98) CAAACACA 1 chr2L:15435794-15435914 ( 97) AATACAAA 1 chr2R:20119474-20119594 ( 38) AATACAAA 1 chr3L:912713-912833 ( 72) AATACAAA 1 chrX:8523930-8524050 ( 101) AATACAAA 1 chrX:19717622-19717742 ( 103) CACACAAA 1 chr3R:15518378-15518498 ( 95) AAAAAACA 1 chr3L:21210309-21210429 ( 100) AACAAAAA 1 chr2R:9503742-9503862 ( 110) AACACACA 1 chr2L:1449283-1449403 ( 57) AATAAAAA 1 chr3R:16854630-16854750 ( 89) AATAAAAA 1 chr2L:21014695-21014815 ( 71) AATACACA 1 chr3L:905435-905555 ( 54) AATACACA 1 chr3R:16456771-16456891 ( 102) CACAAAAA 1 chr2R:12260305-12260425 ( 89) CACACACA 1 chr3R:10491442-10491562 ( 79) CATAAAAA 1 chr2R:9981682-9981802 ( 83) CATAAAAA 1 chr2L:11168057-11168177 ( 9) CACACACA 1 chr2R:24727559-24727679 ( 2) CACACACA 1 chr3L:14262889-14263009 ( 39) CATACACA 1 chr3L:4076186-4076306 ( 85) CACAAACA 1 chr3L:26986-27106 ( 62) CACAAACA 1 chr3L:13965596-13965716 ( 69) CACAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2866 E= 3.6e+004 113 85 -1226 -1226 194 -1226 -1226 -1226 108 -8 -1226 -21 194 -1226 -1226 -1226 64 132 -1226 -1226 194 -1226 -1226 -1226 132 55 -1226 -1226 194 -1226 -1226 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 3.6e+004 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.551020 0.224490 0.000000 0.224490 1.000000 0.000000 0.000000 0.000000 0.408163 0.591837 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.653061 0.346939 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAMAMA MEME-5 regular expression -------------------------------------------------------------------------------- [AC]A[ACT]A[CA]A[AC]A -------------------------------------------------------------------------------- Time 31.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:901581-901701 3.17e-02 69_[+4(5.55e-05)]_43 chr3R:16456771-16456891 1.09e-02 6_[+2(1.10e-05)]_106 chrX:15971714-15971834 1.95e-02 [+5(5.88e-05)]_[+5(5.88e-05)]_104 chrX:3485976-3486096 3.39e-02 120 chr3L:6701214-6701334 8.13e-03 75_[+2(3.51e-05)]_37 chr2L:3130556-3130676 6.11e-02 120 chr3L:904043-904163 1.79e-01 120 chr3R:17902380-17902500 7.25e-03 41_[+3(4.40e-05)]_27_[+1(1.63e-05)]_\ 36 chr3R:24514793-24514913 4.61e-01 120 chr3L:13137535-13137655 1.21e-01 120 chr3R:9739898-9740018 4.29e-02 64_[+1(1.63e-05)]_48 chr3L:6162868-6162988 1.58e-01 120 chr3R:30880124-30880244 9.00e-03 22_[+2(2.30e-05)]_90 chr3R:31218164-31218284 5.40e-03 56_[+1(1.63e-05)]_56 chr3R:30850566-30850686 4.05e-03 93_[+2(1.10e-05)]_19 chr3L:19871667-19871787 3.56e-01 120 chr3R:25146799-25146919 9.79e-01 120 chr3L:19251276-19251396 5.57e-02 22_[+2(1.10e-05)]_90 chr3R:24580231-24580351 4.76e-02 18_[+1(1.63e-05)]_17_[+1(1.63e-05)]_\ 69 chr3L:15664338-15664458 6.82e-01 120 chr3L:15664539-15664659 1.64e-01 120 chr3R:17811839-17811959 1.62e-03 38_[+2(4.71e-05)]_28_[+3(5.72e-05)]_\ 16_[+3(1.54e-05)]_14 chr3R:25416505-25416625 2.70e-04 42_[+3(5.72e-05)]_44_[+2(5.92e-05)]_\ 18 chr2R:9543066-9543186 8.90e-04 50_[+2(1.10e-05)]_53_[+5(7.66e-05)]_\ 1 chr3R:31739247-31739367 3.30e-01 120 chrX:14266782-14266902 9.53e-01 120 chr2L:1390410-1390530 7.18e-03 107_[+1(1.63e-05)]_5 chr2R:18324671-18324791 1.96e-01 120 chr2L:9124758-9124878 7.88e-01 120 chr2L:19586575-19586695 5.18e-02 12_[+2(1.10e-05)]_100 chr3L:5877651-5877771 6.95e-01 120 chr3L:18290113-18290233 2.86e-02 60_[+5(1.96e-05)]_52 chr3L:6942820-6942940 6.46e-06 1_[+2(1.10e-05)]_28_[+3(1.54e-05)]_\ 75 chr2L:1217330-1217450 4.12e-03 84_[+3(1.54e-05)]_28 chrX:12076088-12076208 1.19e-04 73_[+2(1.10e-05)]_10_[+3(1.54e-05)]_\ 21 chr3R:27652270-27652390 7.84e-02 2_[+3(5.72e-05)]_110 chr3L:15678415-15678535 4.17e-03 7_[+2(3.51e-05)]_80_[+1(6.40e-05)]_\ 17 chr2R:24727559-24727679 1.15e-01 120 chr3L:18065582-18065702 2.05e-02 96_[+3(5.72e-05)]_16 chr2L:1885357-1885477 1.35e-02 53_[+3(1.54e-05)]_59 chr3R:11692655-11692775 1.22e-01 67_[+1(6.40e-05)]_45 chr3L:11011747-11011867 1.33e-02 6_[+4(2.78e-05)]_106 chr3R:5043877-5043997 1.04e-03 15_[+1(7.88e-05)]_69_[+2(7.03e-05)]_\ 20 chr2R:10234516-10234636 3.12e-03 40_[+4(1.39e-05)]_72 chr3L:19230964-19231084 1.49e-01 120 chr3R:5091991-5092111 9.00e-01 120 chr3L:18273530-18273650 6.45e-02 33_[+1(6.40e-05)]_79 chr3R:30166534-30166654 2.67e-02 33_[+2(5.92e-05)]_79 chr3R:13673941-13674061 4.92e-02 120 chr2R:14959119-14959239 1.12e-01 101_[+5(9.62e-05)]_11 chr2R:14958384-14958504 2.03e-01 72_[+1(3.14e-05)]_40 chr3R:27558333-27558453 5.56e-02 104_[+3(5.72e-05)]_8 chr3L:14103109-14103229 4.14e-03 91_[+2(9.56e-05)]_21 chrX:19717622-19717742 4.59e-02 120 chrX:21567932-21568052 9.45e-02 120 chrX:1944842-1944962 3.56e-03 37_[+1(3.14e-05)]_75 chr3R:5717109-5717229 2.34e-02 11_[+5(5.88e-05)]_101 chr3L:5664005-5664125 7.44e-07 5_[+2(3.51e-05)]_[+5(1.96e-05)]_17_\ [+3(1.54e-05)]_[+3(4.40e-05)]_66 chr2R:8236837-8236957 9.62e-03 12_[+5(3.73e-05)]_38_[+3(7.13e-05)]_\ 54 chr2R:22406064-22406184 1.26e-03 35_[+1(6.40e-05)]_9_[+2(5.92e-05)]_\ 60 chr3L:912504-912624 4.47e-03 6_[+1(3.14e-05)]_41_[+5(1.96e-05)]_\ 4_[+5(7.66e-05)]_45 chr3R:31813010-31813130 3.57e-02 20_[+1(1.63e-05)]_92 chrX:1273482-1273602 3.57e-02 120 chr2L:9455304-9455424 4.71e-02 44_[+1(6.40e-05)]_68 chr3R:16517126-16517246 3.25e-01 120 chrX:9282772-9282892 2.75e-02 99_[+4(1.39e-05)]_13 chr2R:19356845-19356965 7.28e-02 58_[+1(6.40e-05)]_54 chr3L:21508096-21508216 1.81e-03 62_[+1(1.63e-05)]_50 chr2R:7372712-7372832 9.54e-01 120 chr3R:5212040-5212160 3.77e-02 120 chr3R:8482682-8482802 8.67e-02 14_[+1(3.14e-05)]_98 chr3R:5204563-5204683 5.78e-01 120 chr2R:21038951-21039071 1.22e-02 70_[+4(2.78e-05)]_42 chrX:5663031-5663151 4.57e-01 120 chr2R:19450338-19450458 8.09e-03 45_[+1(9.48e-05)]_67 chr3R:16854630-16854750 1.90e-02 120 chr3R:22152563-22152683 5.59e-01 120 chr2L:15426875-15426995 3.17e-02 107_[+2(3.51e-05)]_5 chrX:7432501-7432621 4.55e-02 10_[+3(5.72e-05)]_102 chr2L:8303386-8303506 3.43e-01 120 chr3L:8952988-8953108 2.31e-01 [+1(6.40e-05)]_112 chr3L:19429489-19429609 2.13e-02 19_[+2(1.10e-05)]_93 chr2L:179164-179284 9.20e-01 120 chr3L:13965596-13965716 5.13e-02 120 chr2R:24948923-24949043 1.98e-01 120 chr3R:17847178-17847298 3.26e-02 120 chr3L:14660073-14660193 2.46e-01 120 chr3L:899401-899521 6.34e-02 73_[+4(2.78e-05)]_39 chr3L:11302935-11303055 8.98e-02 120 chr3R:17824600-17824720 1.70e-02 111_[+2(4.71e-05)]_1 chr4:988521-988641 5.66e-01 120 chr2L:17543004-17543124 5.53e-03 24_[+3(5.72e-05)]_88 chrX:411417-411537 2.72e-02 36_[+2(3.51e-05)]_76 chrX:5662123-5662243 5.66e-02 21_[+1(1.63e-05)]_91 chr3L:6013101-6013221 6.57e-02 23_[+1(7.88e-05)]_89 chr3L:13311334-13311454 1.95e-01 120 chr2L:19831562-19831682 7.09e-01 120 chr2R:14525342-14525462 1.26e-02 72_[+1(1.63e-05)]_40 chr3R:8206349-8206469 6.79e-01 120 chrX:3021672-3021792 9.62e-02 73_[+2(7.03e-05)]_39 chr3R:16705878-16705998 1.01e-02 29_[+1(6.40e-05)]_21_[+1(7.88e-05)]_\ 54 chrX:11981496-11981616 8.56e-02 120 chr3R:22217799-22217919 7.59e-02 48_[+4(2.78e-05)]_64 chr2R:12532055-12532175 9.23e-02 120 chr3R:7972284-7972404 4.53e-01 120 chrX:8539029-8539149 1.16e-03 21_[+3(2.97e-05)]_43_[+1(6.40e-05)]_\ 40 chr3R:15609363-15609483 7.45e-02 120 chr3R:18699947-18700067 9.37e-04 72_[+1(1.63e-05)]_40 chrX:14221994-14222114 4.66e-03 21_[+1(7.88e-05)]_83_[+3(1.54e-05)] chr2L:11168057-11168177 3.39e-02 120 chr2R:13681548-13681668 5.74e-01 120 chr3R:20593546-20593666 5.14e-02 51_[+3(1.54e-05)]_2_[+3(7.13e-05)]_\ 2_[+3(7.13e-05)]_41 chrX:1692655-1692775 3.08e-02 80_[+3(1.54e-05)]_32 chr3L:13155422-13155542 1.14e-01 120 chr3R:8715560-8715680 1.78e-01 120 chr2R:22517494-22517614 7.29e-03 56_[+5(1.96e-05)]_56 chr2R:7170091-7170211 3.12e-02 [+3(2.97e-05)]_112 chr3L:26986-27106 5.79e-02 120 chr3R:10456555-10456675 3.37e-01 120 chr3L:22642415-22642535 4.46e-03 120 chr3L:4080461-4080581 2.49e-01 23_[+5(5.88e-05)]_89 chr2L:3426989-3427109 2.04e-01 120 chr3R:12291988-12292108 7.08e-01 120 chr2L:15491469-15491589 2.54e-01 120 chr2R:18514326-18514446 3.69e-02 32_[+2(8.24e-05)]_80 chr2L:2577329-2577449 3.40e-03 16_[+5(5.88e-05)]_51_[+1(6.40e-05)]_\ 37 chr2R:22674980-22675100 1.36e-04 16_[+2(3.51e-05)]_28_[+1(1.63e-05)]_\ 28_[+5(7.66e-05)]_24 chr3L:21210309-21210429 8.84e-03 35_[+3(1.54e-05)]_77 chr2R:13048582-13048702 2.32e-02 40_[+1(3.14e-05)]_72 chr2R:13194215-13194335 4.36e-03 120 chr3L:5997121-5997241 2.48e-02 120 chr3R:11370439-11370559 6.32e-01 120 chr2R:20583597-20583717 1.11e-01 55_[+4(4.29e-05)]_57 chr2R:9549505-9549625 5.24e-01 120 chr2R:16396013-16396133 5.94e-01 120 chr3R:18299668-18299788 8.35e-01 120 chr3L:905435-905555 8.10e-02 120 chr3R:31938409-31938529 3.54e-01 120 chr2R:9981682-9981802 1.87e-01 120 chrX:19248958-19249078 8.94e-02 120 chrX:8523930-8524050 2.07e-03 73_[+4(2.78e-05)]_39 chr3R:21807422-21807542 6.45e-03 93_[+1(6.40e-05)]_10_[+3(8.43e-05)]_\ 1 chr3R:24577421-24577541 1.05e-01 120 chr3L:1748709-1748829 8.73e-02 40_[+4(5.55e-05)]_72 chr3R:16245626-16245746 2.84e-03 18_[+1(9.48e-05)]_78_[+4(1.39e-05)]_\ 8 chr3L:912713-912833 1.88e-01 120 chr3R:30860640-30860760 4.20e-01 120 chrX:13787464-13787584 4.31e-02 100_[+3(5.72e-05)]_12 chr3L:11377840-11377960 3.55e-01 120 chr2L:19480732-19480852 1.09e-02 78_[+3(5.72e-05)]_34 chr3R:21642434-21642554 4.41e-02 120 chr2R:11610292-11610412 1.52e-01 120 chr3R:9259031-9259151 3.91e-01 120 chrX:1608815-1608935 7.41e-02 120 chr2R:10263888-10264008 1.44e-01 120 chr2L:19902963-19903083 2.56e-01 120 chr2R:8183366-8183486 9.89e-01 120 chr3L:15920898-15921018 9.86e-02 107_[+3(4.40e-05)]_5 chr2L:8366472-8366592 3.91e-02 61_[+3(1.54e-05)]_[+3(7.13e-05)]_43 chr3R:18994893-18995013 2.47e-02 83_[+4(4.29e-05)]_29 chr3R:11615639-11615759 3.65e-01 120 chr2L:19790919-19791039 5.71e-01 120 chr2R:11219896-11220016 7.61e-01 120 chrX:15816994-15817114 1.04e-03 66_[+4(1.39e-05)]_46 chr2R:20665733-20665853 9.94e-02 11_[+4(4.29e-05)]_37_[+4(5.55e-05)]_\ 56 chrX:15817956-15818076 6.19e-02 120 chr3R:10491442-10491562 7.73e-04 11_[+2(1.10e-05)]_101 chr2L:3806399-3806519 1.04e-01 58_[+5(3.73e-05)]_54 chr3L:20310527-20310647 1.36e-02 87_[+3(4.40e-05)]_17_[+3(1.54e-05)] chr3R:6813395-6813515 9.11e-02 120 chr3L:21194520-21194640 4.46e-03 108_[+5(5.88e-05)]_4 chr2R:9503514-9503634 8.09e-02 24_[+1(6.40e-05)]_88 chr2R:16406138-16406258 2.05e-01 120 chr3L:11681345-11681465 3.87e-01 120 chr2L:1449283-1449403 8.12e-02 120 chr3R:22719422-22719542 5.34e-02 47_[+1(6.40e-05)]_65 chr2L:12252457-12252577 8.74e-03 23_[+3(7.13e-05)]_89 chr2L:1256145-1256265 8.47e-02 68_[+4(4.29e-05)]_44 chr2L:19889338-19889458 2.60e-02 76_[+4(4.29e-05)]_36 chr2R:24741489-24741609 8.12e-01 120 chr2R:24948722-24948842 1.26e-02 61_[+5(5.88e-05)]_51 chr3L:2553662-2553782 1.21e-01 120 chr3R:30904135-30904255 4.15e-03 20_[+1(1.63e-05)]_92 chr3R:22634654-22634774 1.44e-02 120 chr3R:29218472-29218592 4.39e-01 120 chr3L:4076186-4076306 1.30e-01 120 chr3L:14262889-14263009 1.86e-03 89_[+3(7.13e-05)]_23 chr2R:12260305-12260425 2.36e-01 120 chr3R:19931453-19931573 3.43e-03 111_[+1(6.40e-05)]_1 chrX:1793906-1794026 3.17e-02 78_[+2(8.24e-05)]_34 chr2L:10549158-10549278 9.61e-03 20_[+2(2.30e-05)]_92 chr2L:14973840-14973960 4.89e-01 120 chr2R:9503742-9503862 3.52e-02 120 chrX:16330507-16330627 8.91e-04 18_[+5(3.73e-05)]_11_[+1(6.40e-05)]_\ 75 chr2L:224041-224161 5.73e-01 120 chr3L:22952649-22952769 1.04e-01 85_[+5(5.88e-05)]_27 chr3L:16780375-16780495 6.44e-01 120 chr3L:22373345-22373465 1.44e-01 120 chr3R:25519590-25519710 5.65e-03 10_[+2(1.10e-05)]_102 chr2R:13050219-13050339 4.34e-01 120 chr2R:7373989-7374109 5.68e-01 120 chr2R:10224560-10224680 1.61e-01 120 chrX:2394659-2394779 3.59e-04 4_[+2(2.30e-05)]_24_[+2(1.10e-05)]_\ 66_[+5(9.62e-05)]_2 chr2R:12957385-12957505 4.41e-03 48_[+1(7.88e-05)]_64 chr3R:16877431-16877551 1.10e-02 107_[+4(9.71e-05)]_5 chr2R:14482828-14482948 1.31e-01 120 chr2L:13511614-13511734 1.29e-01 59_[+3(2.97e-05)]_53 chrX:4549585-4549705 1.24e-01 34_[+1(1.63e-05)]_13_[+1(9.48e-05)]_\ 57 chr2L:9456388-9456508 1.50e-02 120 chr2R:20119474-20119594 9.00e-03 120 chr2L:19809762-19809882 5.37e-01 120 chr2L:17735367-17735487 6.98e-03 51_[+5(1.96e-05)]_61 chr3L:1489652-1489772 4.16e-02 120 chrX:19879984-19880104 2.03e-02 120 chrX:15823353-15823473 8.63e-02 24_[+1(6.40e-05)]_42_[+1(9.48e-05)]_\ 38 chr3R:15518378-15518498 4.47e-03 14_[+1(3.14e-05)]_98 chr3L:13662531-13662651 3.99e-01 120 chr2R:16335589-16335709 7.90e-05 21_[+3(5.72e-05)]_42_[+1(6.40e-05)]_\ [+4(1.39e-05)]_33 chr3R:18245326-18245446 4.92e-02 108_[+1(9.48e-05)]_4 chrX:14266994-14267114 1.78e-03 44_[+1(1.63e-05)]_31_[+5(1.96e-05)]_\ 29 chrX:15089484-15089604 6.28e-02 120 chrX:5144695-5144815 1.54e-01 40_[+4(2.78e-05)]_72 chr3R:10190542-10190662 4.95e-01 120 chr3R:22411506-22411626 5.45e-02 49_[+1(6.40e-05)]_63 chr3L:10308489-10308609 1.92e-01 62_[+4(5.55e-05)]_50 chr3R:24575072-24575192 1.67e-04 109_[+2(1.10e-05)]_3 chr2R:15378748-15378868 2.78e-01 120 chr2R:13079607-13079727 3.08e-02 51_[+3(5.72e-05)]_61 chr3R:16051107-16051227 8.33e-02 81_[+3(7.13e-05)]_31 chr2R:12742292-12742412 2.88e-01 91_[+2(9.56e-05)]_21 chr2L:21014695-21014815 7.25e-03 120 chr3R:6862726-6862846 4.88e-01 120 chr2L:6185088-6185208 9.72e-02 57_[+5(9.62e-05)]_55 chr3R:19318643-19318763 8.90e-02 120 chr2L:14578926-14579046 3.59e-01 120 chr2L:20561932-20562052 3.05e-01 120 chr2L:7265155-7265275 1.28e-01 120 chr3L:22357337-22357457 2.03e-03 46_[+1(1.63e-05)]_[+5(3.73e-05)]_58 chr3R:3790307-3790427 8.39e-01 120 chr3R:19246329-19246449 1.94e-03 42_[+2(4.71e-05)]_16_[+4(4.29e-05)]_\ 46 chrX:4191265-4191385 1.48e-03 19_[+2(2.30e-05)]_93 chr3L:2885064-2885184 9.70e-01 120 chr3R:10850940-10851060 1.09e-01 120 chr2R:12979472-12979592 9.71e-05 25_[+5(9.62e-05)]_31_[+5(5.88e-05)]_\ 21_[+3(4.40e-05)]_1_[+3(7.13e-05)]_10 chr3R:10856713-10856833 7.18e-03 13_[+4(4.29e-05)]_99 chr3R:18987325-18987445 1.79e-02 54_[+1(3.14e-05)]_58 chr2L:15435794-15435914 4.58e-02 120 chr2R:20916243-20916363 1.08e-01 12_[+1(3.14e-05)]_100 chr2L:6795307-6795427 4.76e-01 120 chr3L:5691117-5691237 1.95e-03 1_[+5(7.66e-05)]_111 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************