******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/nau.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30767680-30767800 1.0000 120 chr3L:2136558-2136678 1.0000 120 chr3R:22171696-22171816 1.0000 120 chr3R:6828411-6828531 1.0000 120 chr2L:14476816-14476936 1.0000 120 chr2L:5150050-5150170 1.0000 120 chr3R:30921718-30921838 1.0000 120 chr2R:19331386-19331506 1.0000 120 chr3L:786963-787083 1.0000 120 chr2L:14377844-14377964 1.0000 120 chr3R:15465538-15465658 1.0000 120 chr3L:643471-643591 1.0000 120 chr3R:30541624-30541744 1.0000 120 chr3R:9483896-9484016 1.0000 120 chr3R:30779769-30779889 1.0000 120 chr2R:7696125-7696245 1.0000 120 chr3L:7837930-7838050 1.0000 120 chr3L:19940223-19940343 1.0000 120 chr3L:9113729-9113849 1.0000 120 chr2L:21887730-21887850 1.0000 120 chr2R:9941716-9941836 1.0000 120 chr3L:22390448-22390568 1.0000 120 chr2R:24273827-24273947 1.0000 120 chr2R:16802445-16802565 1.0000 120 chr3L:20441041-20441161 1.0000 120 chr3R:10275303-10275423 1.0000 120 chr3L:3934286-3934406 1.0000 120 chrX:5357130-5357250 1.0000 120 chr3L:21380251-21380371 1.0000 120 chr3L:15073854-15073974 1.0000 120 chr2L:14376571-14376691 1.0000 120 chr2L:17571655-17571775 1.0000 120 chrX:13817979-13818099 1.0000 120 chr2R:18325842-18325962 1.0000 120 chr3R:24026674-24026794 1.0000 120 chr2L:9679879-9679999 1.0000 120 chr3L:2728108-2728228 1.0000 120 chr3L:13479329-13479449 1.0000 120 chr3L:2745091-2745211 1.0000 120 chr3R:22172562-22172682 1.0000 120 chr2R:9938100-9938220 1.0000 120 chr2R:21201802-21201922 1.0000 120 chr3R:13978067-13978187 1.0000 120 chr2R:22655493-22655613 1.0000 120 chr3R:25548324-25548444 1.0000 120 chr3L:22989644-22989764 1.0000 120 chr2L:7711152-7711272 1.0000 120 chr2R:17107777-17107897 1.0000 120 chr2L:14419917-14420037 1.0000 120 chr2L:10498181-10498301 1.0000 120 chr2R:24279754-24279874 1.0000 120 chr2R:20036120-20036240 1.0000 120 chr2R:13245281-13245401 1.0000 120 chr3L:3400821-3400941 1.0000 120 chr2R:12595725-12595845 1.0000 120 chr3R:14599247-14599367 1.0000 120 chr2R:17478082-17478202 1.0000 120 chr2R:21641896-21642016 1.0000 120 chr2L:14558997-14559117 1.0000 120 chr2R:21853406-21853526 1.0000 120 chr2R:17310862-17310982 1.0000 120 chr3L:1393581-1393701 1.0000 120 chr2L:94233-94353 1.0000 120 chr3R:20168132-20168252 1.0000 120 chr3R:20167227-20167347 1.0000 120 chrX:9636944-9637064 1.0000 120 chr3R:27425594-27425714 1.0000 120 chr3L:109234-109354 1.0000 120 chr3L:536451-536571 1.0000 120 chr3L:41535-41655 1.0000 120 chr3R:20604188-20604308 1.0000 120 chr3L:9815864-9815984 1.0000 120 chr2R:23627514-23627634 1.0000 120 chr3R:16556971-16557091 1.0000 120 chr2R:16802649-16802769 1.0000 120 chrX:9121443-9121563 1.0000 120 chr2L:14499656-14499776 1.0000 120 chrX:2457376-2457496 1.0000 120 chr2L:5247956-5248076 1.0000 120 chr3L:6704408-6704528 1.0000 120 chr3L:15101667-15101787 1.0000 120 chr2R:6946549-6946669 1.0000 120 chr2L:14506847-14506967 1.0000 120 chr2L:7572002-7572122 1.0000 120 chr3R:16218649-16218769 1.0000 120 chr2L:20478658-20478778 1.0000 120 chr3L:21379484-21379604 1.0000 120 chr2R:17793754-17793874 1.0000 120 chrX:9122661-9122781 1.0000 120 chr3L:10659650-10659770 1.0000 120 chr3R:13013983-13014103 1.0000 120 chr2R:9266425-9266545 1.0000 120 chr3R:13776994-13777114 1.0000 120 chr3R:30111189-30111309 1.0000 120 chr3R:10679846-10679966 1.0000 120 chrX:4936679-4936799 1.0000 120 chr3R:23967542-23967662 1.0000 120 chr2R:9938302-9938422 1.0000 120 chrX:17716996-17717116 1.0000 120 chrX:18116911-18117031 1.0000 120 chrX:6033745-6033865 1.0000 120 chr3R:26552365-26552485 1.0000 120 chr2R:23740440-23740560 1.0000 120 chr3R:10266980-10267100 1.0000 120 chr3L:16057640-16057760 1.0000 120 chr2R:12744757-12744877 1.0000 120 chr3L:19908411-19908531 1.0000 120 chr2L:5116688-5116808 1.0000 120 chr2R:8755757-8755877 1.0000 120 chr3R:29476428-29476548 1.0000 120 chr3L:3523885-3524005 1.0000 120 chr3R:10265275-10265395 1.0000 120 chrX:1985729-1985849 1.0000 120 chr3R:30541824-30541944 1.0000 120 chr3L:9690976-9691096 1.0000 120 chrX:13451200-13451320 1.0000 120 chr3L:22175707-22175827 1.0000 120 chr3L:7005565-7005685 1.0000 120 chr2L:8100110-8100230 1.0000 120 chr2L:7525143-7525263 1.0000 120 chr2L:21108055-21108175 1.0000 120 chr3R:7075047-7075167 1.0000 120 chr3L:786102-786222 1.0000 120 chr3R:22056326-22056446 1.0000 120 chr3L:21112106-21112226 1.0000 120 chr2R:23627713-23627833 1.0000 120 chr3R:18804660-18804780 1.0000 120 chr2L:7522483-7522603 1.0000 120 chr3L:2575438-2575558 1.0000 120 chr2L:18475854-18475974 1.0000 120 chr3R:23868947-23869067 1.0000 120 chr2R:21875258-21875378 1.0000 120 chr3L:11703783-11703903 1.0000 120 chr2L:21676912-21677032 1.0000 120 chr3R:9144456-9144576 1.0000 120 chr3L:3934491-3934611 1.0000 120 chr3L:9502472-9502592 1.0000 120 chr3L:13489374-13489494 1.0000 120 chr2R:21842454-21842574 1.0000 120 chrX:10733254-10733374 1.0000 120 chr3R:7106912-7107032 1.0000 120 chr2R:16095654-16095774 1.0000 120 chrX:12219662-12219782 1.0000 120 chr3R:10106323-10106443 1.0000 120 chr3L:10341801-10341921 1.0000 120 chr3R:12562363-12562483 1.0000 120 chr3R:14472716-14472836 1.0000 120 chrX:5994914-5995034 1.0000 120 chr2R:17435609-17435729 1.0000 120 chr2R:23724129-23724249 1.0000 120 chr3L:3961101-3961221 1.0000 120 chr3L:5971421-5971541 1.0000 120 chr3R:14763696-14763816 1.0000 120 chr3L:18190905-18191025 1.0000 120 chr3R:21598199-21598319 1.0000 120 chr3L:19340650-19340770 1.0000 120 chr3R:21602331-21602451 1.0000 120 chr3L:34772-34892 1.0000 120 chr3R:15463511-15463631 1.0000 120 chrX:22963584-22963704 1.0000 120 chr3R:21158785-21158905 1.0000 120 chrX:13645180-13645300 1.0000 120 chrX:13304312-13304432 1.0000 120 chr2L:7528230-7528350 1.0000 120 chr2R:17087604-17087724 1.0000 120 chr2R:25076901-25077021 1.0000 120 chr3R:6414511-6414631 1.0000 120 chr3L:15178999-15179119 1.0000 120 chr2R:8336211-8336331 1.0000 120 chrX:18014663-18014783 1.0000 120 chr3R:17783296-17783416 1.0000 120 chr3L:16429580-16429700 1.0000 120 chr2L:3719631-3719751 1.0000 120 chr3L:1859681-1859801 1.0000 120 chr4:210439-210559 1.0000 120 chr2R:6746202-6746322 1.0000 120 chr3R:11451351-11451471 1.0000 120 chr2L:12509603-12509723 1.0000 120 chr2R:15249617-15249737 1.0000 120 chr3R:5701192-5701312 1.0000 120 chr3L:16657182-16657302 1.0000 120 chr3L:22402858-22402978 1.0000 120 chr2L:14374182-14374302 1.0000 120 chr3R:21660648-21660768 1.0000 120 chr2R:7896334-7896454 1.0000 120 chr3R:25448867-25448987 1.0000 120 chr2L:2906235-2906355 1.0000 120 chr3L:14549372-14549492 1.0000 120 chr2L:21756924-21757044 1.0000 120 chr2L:10499536-10499656 1.0000 120 chr3L:7996499-7996619 1.0000 120 chr3L:2469794-2469914 1.0000 120 chr2L:3114257-3114377 1.0000 120 chr2R:19125909-19126029 1.0000 120 chr2R:11706374-11706494 1.0000 120 chr3L:16889718-16889838 1.0000 120 chr3L:3760525-3760645 1.0000 120 chr2R:15802144-15802264 1.0000 120 chr3R:19467588-19467708 1.0000 120 chr3L:20901154-20901274 1.0000 120 chr2L:14307667-14307787 1.0000 120 chr2L:20886147-20886267 1.0000 120 chr2L:7789122-7789242 1.0000 120 chrX:6638312-6638432 1.0000 120 chr2L:20066717-20066837 1.0000 120 chr2R:6870188-6870308 1.0000 120 chr2L:14513382-14513502 1.0000 120 chr3R:21271285-21271405 1.0000 120 chr3L:16494909-16495029 1.0000 120 chr3L:16431168-16431288 1.0000 120 chr3R:14415723-14415843 1.0000 120 chr2L:14699629-14699749 1.0000 120 chr3L:8683904-8684024 1.0000 120 chr4:558727-558847 1.0000 120 chr3L:17808931-17809051 1.0000 120 chr3L:3411170-3411290 1.0000 120 chr3L:22401663-22401783 1.0000 120 chr2R:21549008-21549128 1.0000 120 chr3L:12045571-12045691 1.0000 120 chr3L:11384127-11384247 1.0000 120 chrX:8294490-8294610 1.0000 120 chrX:8295071-8295191 1.0000 120 chr3R:9770316-9770436 1.0000 120 chr3L:17008752-17008872 1.0000 120 chr3L:6612792-6612912 1.0000 120 chrX:2973719-2973839 1.0000 120 chr2R:16848443-16848563 1.0000 120 chrX:9581874-9581994 1.0000 120 chr2R:10212378-10212498 1.0000 120 chr3R:16349244-16349364 1.0000 120 chr2R:21611354-21611474 1.0000 120 chr3R:9944624-9944744 1.0000 120 chr3L:11345672-11345792 1.0000 120 chr3R:10093748-10093868 1.0000 120 chrX:9139258-9139378 1.0000 120 chr3L:22838173-22838293 1.0000 120 chr3R:11993438-11993558 1.0000 120 chr2L:5338786-5338906 1.0000 120 chr3L:8029308-8029428 1.0000 120 chr2L:1738274-1738394 1.0000 120 chr3L:15597149-15597269 1.0000 120 chr3L:15824102-15824222 1.0000 120 chr2R:16869413-16869533 1.0000 120 chr2L:14537000-14537120 1.0000 120 chrX:772784-772904 1.0000 120 chr3L:10741291-10741411 1.0000 120 chrX:3695783-3695903 1.0000 120 chr3R:19621124-19621244 1.0000 120 chr2L:4227770-4227890 1.0000 120 chr2R:15531562-15531682 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_nau/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/nau.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.271 C 0.23 G 0.227 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.271 C 0.23 G 0.227 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCAGCTGY MEME-1 width = 8 sites = 133 llr = 1130 E-value = 2.0e-123 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:9::::1 pos.-specific C :a::a::5 probability G 5::a::a1 matrix T 1:1::a:4 bits 2.1 * * 1.9 * ** * 1.7 * **** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.3 bits) 0.9 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1738274-1738394 82 1.05e-05 CAGCTGTGTG GCAGCTGC ATAATTTGCC chr3R:17783296-17783416 39 1.05e-05 TCCCCAAACG gcagctgc tgttgctgtt chr2R:8336211-8336331 87 1.05e-05 TGCGGTTGTC GCAGCTGC CGCCTGTTGC chrX:22963584-22963704 6 1.05e-05 CTGTC GCAGCTGC AAACCAGGCC chr3L:18190905-18191025 111 1.05e-05 AAAAAGCGAA GCAGCTGC GA chr3R:7075047-7075167 92 1.05e-05 ttgtgtgagt gCAGCTGC TTTTGAATTT chr2L:7525143-7525263 48 1.05e-05 TATAAACCAA GCAGCTGC CCCAAAGTGT chr3R:10265275-10265395 100 1.05e-05 AGCCGCATTT GCAGCTGC GCCGAGCGAT chr2R:8755757-8755877 79 1.05e-05 GAAGACCCAC GCAGCTGC Tgtcattctg chr2R:9938302-9938422 53 1.05e-05 CGCCAATTGC Gcagctgc agatacacat chr2L:14506847-14506967 33 1.05e-05 AAATGAAGGC GCAGCTGC TGCGGCTACA chr2L:14499656-14499776 57 1.05e-05 agcaaaagca GCAGCTGC CACCGTGTTG chr2R:21201802-21201922 85 1.05e-05 GCCGGCCACA GCAGCTGC CTTCAATTTT chr3R:22172562-22172682 7 1.05e-05 AACAAA GCAGCTGC CACACCAGGc chr3L:21380251-21380371 20 1.05e-05 TTTTTTGGGG GCAGCTGC CGCACATGTT chr3R:10275303-10275423 70 1.05e-05 CATAAAGCTC GCAGCTGC TCTTTTCTTG chr2L:21887730-21887850 110 1.05e-05 TGATGATGAT GCAGCTGC TGG chr3L:19940223-19940343 41 1.05e-05 ATGCCGCCTG GCAGCTGC TGGCGATTTC chr3L:7837930-7838050 56 1.05e-05 AAAAATTAAA GCAGCTGC TCCAATTCTC chr2R:7696125-7696245 84 1.05e-05 GCCTGCCGTT GCAGCTGC CGTGGAAATT chr3L:643471-643591 33 1.05e-05 ATGCCCCGTG GCAGCTGC AGCTGTTTCT chr3L:786963-787083 69 1.05e-05 CACATCGACA GCAGCTGC GCGCGGCCAC chr3R:30767680-30767800 66 1.05e-05 ATGGCGCTGG GCAGCTGC GACTGCGATG chr3L:8029308-8029428 47 2.29e-05 ACTATGTGCA GCAGCTGT TGGACATTTA chr2L:14513382-14513502 83 2.29e-05 TCGACCAGTG GCAGCTGT TCGCTAACTC chr3L:15178999-15179119 50 2.29e-05 CTATTTGGGA GCAGCTGT CGGCCATCAT chr2L:7522483-7522603 43 2.29e-05 CAAAACACTT GCAGCTGT TCCCCCGATC chr3L:786102-786222 17 2.29e-05 ctgatgtgtt gcagctgt gcgccacatg chr3L:9690976-9691096 41 2.29e-05 AGTTCAGCCA GCAGCTGT TTCTTTGGCC chr3R:29476428-29476548 58 2.29e-05 TGCAGATGCA GCAGCTGT CTTCTTGAGA chrX:4936679-4936799 93 2.29e-05 AACGTGCCGC GCAGCTGT TGCGGCTTCT chr3L:10659650-10659770 58 2.29e-05 AGAAGATATA GCAGCTGT TGCACCTGTT chr3L:15101667-15101787 74 2.29e-05 AACATCGTTA GCAGCTGT TGCTCTTTGC chr3R:16556971-16557091 45 2.29e-05 CCAAGTGGCG GCAGCTGT TGCCGCCCTT chr3L:109234-109354 55 2.29e-05 GTACCCATAG GCAGCTGT TGCCGCCAAT chr3R:20168132-20168252 89 2.29e-05 TGCAGCCTTG GCAGCTGT TTTTGCTTTT chr2L:94233-94353 68 2.29e-05 CAAACTCACT GCAGCTGT TGCTCGTGGG chr2R:21853406-21853526 12 2.29e-05 GCCACCAGGC GCAGCTGT CAACGCCCGT chr2R:17478082-17478202 56 2.29e-05 ATCCACAGCC GCAGCTGT CGTGTGTCTA chr2R:17107777-17107897 58 2.29e-05 CAGACGTGGG GCAGCTGT TACGGATTCG chr3R:13978067-13978187 31 2.29e-05 tgctgctgtt gcagctgt ttgctgACCC chr3L:3934286-3934406 68 2.29e-05 TTTTAATTAG GCAGCTGT CGCGGATCGC chr2R:24273827-24273947 64 2.29e-05 CGGTCTGGTC GCAGCTGT TGCCTGCCGA chr3R:30541624-30541744 43 2.29e-05 ACCCACAGCT GCAGCTGT CATGAATATT chr3R:15465538-15465658 57 2.29e-05 acagatTCGC GCAGCTGT CGGATGTGCT chr2L:5150050-5150170 57 2.29e-05 AACGAGAGCA GCAGCTGT GTCTATAATT chr2L:14476816-14476936 61 2.29e-05 CTTCCGAATA GCAGCTGT GCCTAATTTA chr3L:22401663-22401783 40 3.54e-05 AGCGATAGCG ACAGCTGC TGCCGAGTGC chrX:13304312-13304432 76 3.54e-05 CGCCCCCACA ACAGCTGC TCTCCGTTGA chr3R:15463511-15463631 72 3.54e-05 TGCCGCGGCA ACAGCTGC TGCTCCAGCG chrX:5994914-5995034 29 3.54e-05 GGGCCGGCTC ACAGCTGC CGTAATTGAA chr2R:16095654-16095774 86 3.54e-05 GGAGAATTGG ACAGCTGC CGCCATGATA chrX:10733254-10733374 78 3.54e-05 tacagactgc acagctgc agataGAAAC chr2L:5116688-5116808 73 3.54e-05 TGGATTTGAG ACAGCTGC TGGCCAccat chr3L:19908411-19908531 82 3.54e-05 CAGAAGAGGA ACAGCTGC GAACGAATTA chr2R:12744757-12744877 36 3.54e-05 gCAGTGGCCA ACAGCTGC CGACAGGCGC chr3R:10266980-10267100 54 3.54e-05 AACAAAAGCA ACAGCTGC GTTCTGCTTT chr2R:9266425-9266545 26 3.54e-05 GCATTCTTCG ACAGCTGC CAAACATGTC chr2R:6946549-6946669 36 3.54e-05 AGAAATGGAA ACAGCTGC GAGTGCTGCC chr3L:6704408-6704528 17 3.54e-05 TTGTCAACCC ACAGCTGC TTCGCTCAGC chr2R:17310862-17310982 65 3.54e-05 ACCAGACACA ACAGCTGC AATAACAACA chr2R:21641896-21642016 39 3.54e-05 CCCACCCACA ACAGCTGC GACTGGGTCT chr2R:12595725-12595845 83 3.54e-05 GCACCGCACA ACAGCTGC CAAAATGTGC chr3R:25548324-25548444 71 3.54e-05 AGACCCATCT ACAGCTGC TGGTCGCAAT chr2R:22655493-22655613 74 3.54e-05 AAATTTGACA ACAGCTGC CGGTTTATTT chrX:13817979-13818099 33 3.54e-05 CAGTTCGCTG ACAGCTGC AGCGCAATAA chr2L:17571655-17571775 76 3.54e-05 TTTTATAGTA ACAGCTGC AACTGACGGG chr3L:22390448-22390568 57 3.54e-05 CTTGGCATGG ACAGCTGC CACATGTGTG chr3L:2136558-2136678 37 3.54e-05 CAAACTAACG ACAGCTGC CGCTGTCTGT chr3R:19621124-19621244 55 5.02e-05 AAAACGGCAA ACAGCTGT TCTGTTCGCG chr2L:20886147-20886267 58 5.02e-05 CTCAGAGCAA ACAGCTGT TTTCTGTTGC chr3L:2469794-2469914 54 5.02e-05 TACGCTTTGC ACAGCTGT TGTATCTGTG chr3L:19340650-19340770 29 5.02e-05 GACTATTTAC ACAGCTGT CTGTATTATA chr3L:13489374-13489494 72 5.02e-05 TATATGCGGT ACAGCTGT CAACACAGCG chr3R:9144456-9144576 20 5.02e-05 AAAATGTTTC ACAGCTGT GCGCGAAGGG chrX:13451200-13451320 52 5.02e-05 AACTACATAA ACAGCTGT CATGGCCCTG chr3L:16057640-16057760 63 5.02e-05 GACGGGACGG ACAGCTGT TGAAACGCAC chr2L:7572002-7572122 95 5.02e-05 ACAAACATCA ACAGCTGT TGGCAGACCG chrX:9636944-9637064 42 5.02e-05 ACGAACGCCA ACAGCTGT ATTTGATTGC chr2R:20036120-20036240 56 5.02e-05 TTCTCCACTG ACAGCTGT TCGGAGCAGG chr3L:13479329-13479449 104 5.02e-05 CAAGTAATGT ACAGCTGT TTCTTTGCG chr2R:18325842-18325962 47 5.02e-05 AGAATAAACT ACAGCTGT TCCGGGCGTT chr2L:14377844-14377964 76 5.02e-05 TTAAACACGA ACAGCTGT GCCAACAATT chrX:9139258-9139378 71 6.06e-05 AAGTCCGGCA GCAGCTGG GCGCTTCCGG chr3R:6414511-6414631 41 6.06e-05 CCTCTCACAT GCAGCTGG CGACGCACAT chr3L:21379484-21379604 16 6.06e-05 CCCCCTTGGG GCAGCTGG GAAAATCTTT chr2R:24279754-24279874 55 6.06e-05 CGACAACGAA GCAGCTGG CACAGCTGGC chr3R:10093748-10093868 5 7.29e-05 CCGA GCAGCTGA CAGTTGCGCT chr3R:16349244-16349364 9 7.29e-05 AAAACGGA GCAGCTGA GCGATCCCCA chr3L:22402858-22402978 45 7.29e-05 CAAAACGCCA GCAGCTGA TGCAGCCCGA chr3L:536451-536571 24 7.29e-05 ATTGACTTCA GCAGCTGA CACAGTGGCC chr3R:27425594-27425714 70 7.29e-05 CATATTGCCA GCAGCTGA GAGGCGGCAA chr3L:3411170-3411290 35 1.09e-04 TGCACAGGCG ACAGCTGG CTGAGTTTGC chr3R:12562363-12562483 66 1.09e-04 TTATATGACA ACAGCTGG GCGAAAGAAT chr3R:10106323-10106443 87 1.09e-04 AAATTTAGAT CCAGCTGC TCAGCTCAAG chr3L:3523885-3524005 74 1.09e-04 ACTTTTGCTT TCAGCTGC TGCTCGAGAA chr3R:13776994-13777114 84 1.09e-04 GAAACTGCAA ACAGCTGG CCACCTGCCA chr3L:2745091-2745211 60 1.09e-04 GCAACAGTTG TCAGCTGC TTCGCTGCTC chr3R:24026674-24026794 108 1.09e-04 CGCACCTTTA ACAGCTGG CACGA chr4:558727-558847 42 1.23e-04 GCGATGGTGA ACAGCTGA TACATGTCAA chr3R:26552365-26552485 74 1.23e-04 TGTGCGGCGC ACAGCTGA GCATCTTGTG chr3L:22989644-22989764 80 1.23e-04 ATGCCAAAGA ACAGCTGA CGCTCCTCGA chrX:6638312-6638432 95 1.61e-04 CACAACAAAT GCTGCTGC CCCCTACGAA chr3L:7996499-7996619 7 1.61e-04 ATTTAT CCAGCTGT TAATTGTGTG chr3R:21598199-21598319 2 1.61e-04 T GCTGCTGC TCCCTCCCAC chr2R:17435609-17435729 32 1.61e-04 TGGCCCCCAG CCAGCTGT CCCAGACAAA chr2L:18475854-18475974 90 1.61e-04 gagtgatgtt gctgctgc tgctgctgTG chr2L:8100110-8100230 1 1.61e-04 . TCAGCTGT CTGCTGTCTC chr3L:7005565-7005685 48 1.61e-04 TGTCTTTCCG CCAGCTGT CGTCTGTTGA chr3R:10679846-10679966 58 1.61e-04 AGAGATCGGG TCAGCTGT CGATCTGACG chr2R:16802445-16802565 47 1.61e-04 GATTACACTT TCAGCTGT TCGCCGGGTA chr2R:19331386-19331506 28 1.61e-04 tttgtcgagt tcagCTGT CGACGTCACT chr3R:11451351-11451471 57 1.93e-04 TGACCTTATG GCAGGTGC AGTTCAATGG chr3R:22056326-22056446 73 1.93e-04 GTTGTCACAT GCGGCTGC TCCTCGAAAT chr3R:9483896-9484016 16 2.05e-04 TACTTCTGGT ACTGCTGC GCTTTATCGC chr3R:9944624-9944744 46 2.38e-04 ATCAAAGTGA GCAGCAGC CGCGGTAGAA chr2R:17087604-17087724 103 2.38e-04 CAGTCGGCGG GCAGCAGC GGCAGTGGGG chrX:12219662-12219782 61 2.38e-04 CAATCATCCA GCGGCTGT TTGCCGTTTG chr2R:23740440-23740560 32 2.38e-04 GTATTTGTCT GCGGCTGT GTGCTTAGCC chr3R:23967542-23967662 68 2.38e-04 TCCAAATTGT GCGGCTGT TGGCCGTGTC chr3L:17808931-17809051 57 2.87e-04 TAATAACCGA GCAGCTCC ATCTAAGTAA chr3L:34772-34892 102 2.87e-04 CGCCACAATG GCAGCTCC CTTGGACTTT chr2R:17793754-17793874 109 2.87e-04 AACTACGGTG GCAGCTCC AGCT chr2R:9938100-9938220 58 2.87e-04 GGTGGGGAAG ACAGGTGC TGCCAAAATG chr3L:15073854-15073974 85 2.87e-04 ATTATGCCCA ACAGGTGC CCCATGCGAT chr3R:30779769-30779889 59 2.87e-04 TCGTCAGGCG ACAGGTGC GCTTCTATAT chr3L:20901154-20901274 20 3.74e-04 ATCTGTTTGC ACAGCAGC CGGGCTCCCA chr3L:14549372-14549492 25 3.74e-04 GACACTTGAA ACAGGTGT TTCATGTGAA chr2R:9941716-9941836 61 3.74e-04 TCAAACAGAT TCAGCTGG CAGTTGTCTC chr3R:30921718-30921838 64 4.14e-04 AATGTCACCG CCAGCTGA CAGATGACGA chr2L:20066717-20066837 67 4.39e-04 GGGGCGGCGG GCTGCTGG ACATCTACGC chr2L:20478658-20478778 30 4.67e-04 ACACTGAAAT GCTGCTGA ATCCACTTGC chr3R:14599247-14599367 70 5.44e-04 ACACTTGACA CCTGCTGC ACAATTACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1738274-1738394 1e-05 81_[+1]_31 chr3R:17783296-17783416 1e-05 38_[+1]_74 chr2R:8336211-8336331 1e-05 86_[+1]_26 chrX:22963584-22963704 1e-05 5_[+1]_107 chr3L:18190905-18191025 1e-05 110_[+1]_2 chr3R:7075047-7075167 1e-05 91_[+1]_21 chr2L:7525143-7525263 1e-05 47_[+1]_65 chr3R:10265275-10265395 1e-05 99_[+1]_13 chr2R:8755757-8755877 1e-05 78_[+1]_34 chr2R:9938302-9938422 1e-05 52_[+1]_60 chr2L:14506847-14506967 1e-05 32_[+1]_80 chr2L:14499656-14499776 1e-05 56_[+1]_56 chr2R:21201802-21201922 1e-05 84_[+1]_28 chr3R:22172562-22172682 1e-05 6_[+1]_106 chr3L:21380251-21380371 1e-05 19_[+1]_93 chr3R:10275303-10275423 1e-05 69_[+1]_43 chr2L:21887730-21887850 1e-05 109_[+1]_3 chr3L:19940223-19940343 1e-05 40_[+1]_72 chr3L:7837930-7838050 1e-05 55_[+1]_57 chr2R:7696125-7696245 1e-05 83_[+1]_29 chr3L:643471-643591 1e-05 32_[+1]_80 chr3L:786963-787083 1e-05 68_[+1]_44 chr3R:30767680-30767800 1e-05 65_[+1]_47 chr3L:8029308-8029428 2.3e-05 46_[+1]_66 chr2L:14513382-14513502 2.3e-05 82_[+1]_30 chr3L:15178999-15179119 2.3e-05 49_[+1]_63 chr2L:7522483-7522603 2.3e-05 42_[+1]_70 chr3L:786102-786222 2.3e-05 16_[+1]_96 chr3L:9690976-9691096 2.3e-05 40_[+1]_72 chr3R:29476428-29476548 2.3e-05 57_[+1]_55 chrX:4936679-4936799 2.3e-05 92_[+1]_20 chr3L:10659650-10659770 2.3e-05 57_[+1]_55 chr3L:15101667-15101787 2.3e-05 73_[+1]_39 chr3R:16556971-16557091 2.3e-05 44_[+1]_68 chr3L:109234-109354 2.3e-05 54_[+1]_58 chr3R:20168132-20168252 2.3e-05 88_[+1]_24 chr2L:94233-94353 2.3e-05 67_[+1]_45 chr2R:21853406-21853526 2.3e-05 11_[+1]_101 chr2R:17478082-17478202 2.3e-05 55_[+1]_57 chr2R:17107777-17107897 2.3e-05 57_[+1]_55 chr3R:13978067-13978187 2.3e-05 30_[+1]_82 chr3L:3934286-3934406 2.3e-05 67_[+1]_45 chr2R:24273827-24273947 2.3e-05 63_[+1]_49 chr3R:30541624-30541744 2.3e-05 42_[+1]_70 chr3R:15465538-15465658 2.3e-05 56_[+1]_56 chr2L:5150050-5150170 2.3e-05 56_[+1]_56 chr2L:14476816-14476936 2.3e-05 60_[+1]_52 chr3L:22401663-22401783 3.5e-05 39_[+1]_73 chrX:13304312-13304432 3.5e-05 75_[+1]_37 chr3R:15463511-15463631 3.5e-05 71_[+1]_41 chrX:5994914-5995034 3.5e-05 28_[+1]_84 chr2R:16095654-16095774 3.5e-05 85_[+1]_27 chrX:10733254-10733374 3.5e-05 77_[+1]_35 chr2L:5116688-5116808 3.5e-05 72_[+1]_40 chr3L:19908411-19908531 3.5e-05 81_[+1]_31 chr2R:12744757-12744877 3.5e-05 35_[+1]_77 chr3R:10266980-10267100 3.5e-05 53_[+1]_59 chr2R:9266425-9266545 3.5e-05 25_[+1]_87 chr2R:6946549-6946669 3.5e-05 35_[+1]_77 chr3L:6704408-6704528 3.5e-05 16_[+1]_96 chr2R:17310862-17310982 3.5e-05 64_[+1]_48 chr2R:21641896-21642016 3.5e-05 38_[+1]_74 chr2R:12595725-12595845 3.5e-05 82_[+1]_30 chr3R:25548324-25548444 3.5e-05 70_[+1]_42 chr2R:22655493-22655613 3.5e-05 73_[+1]_39 chrX:13817979-13818099 3.5e-05 32_[+1]_80 chr2L:17571655-17571775 3.5e-05 75_[+1]_37 chr3L:22390448-22390568 3.5e-05 56_[+1]_56 chr3L:2136558-2136678 3.5e-05 36_[+1]_76 chr3R:19621124-19621244 5e-05 54_[+1]_58 chr2L:20886147-20886267 5e-05 57_[+1]_55 chr3L:2469794-2469914 5e-05 53_[+1]_59 chr3L:19340650-19340770 5e-05 28_[+1]_84 chr3L:13489374-13489494 5e-05 71_[+1]_41 chr3R:9144456-9144576 5e-05 19_[+1]_93 chrX:13451200-13451320 5e-05 51_[+1]_61 chr3L:16057640-16057760 5e-05 62_[+1]_50 chr2L:7572002-7572122 5e-05 94_[+1]_18 chrX:9636944-9637064 5e-05 41_[+1]_71 chr2R:20036120-20036240 5e-05 55_[+1]_57 chr3L:13479329-13479449 5e-05 103_[+1]_9 chr2R:18325842-18325962 5e-05 46_[+1]_66 chr2L:14377844-14377964 5e-05 75_[+1]_37 chrX:9139258-9139378 6.1e-05 70_[+1]_42 chr3R:6414511-6414631 6.1e-05 40_[+1]_72 chr3L:21379484-21379604 6.1e-05 15_[+1]_97 chr2R:24279754-24279874 6.1e-05 54_[+1]_58 chr3R:10093748-10093868 7.3e-05 4_[+1]_108 chr3R:16349244-16349364 7.3e-05 8_[+1]_104 chr3L:22402858-22402978 7.3e-05 44_[+1]_68 chr3L:536451-536571 7.3e-05 23_[+1]_89 chr3R:27425594-27425714 7.3e-05 69_[+1]_43 chr3L:3411170-3411290 0.00011 34_[+1]_78 chr3R:12562363-12562483 0.00011 65_[+1]_47 chr3R:10106323-10106443 0.00011 86_[+1]_26 chr3L:3523885-3524005 0.00011 73_[+1]_39 chr3R:13776994-13777114 0.00011 83_[+1]_29 chr3L:2745091-2745211 0.00011 59_[+1]_53 chr3R:24026674-24026794 0.00011 107_[+1]_5 chr4:558727-558847 0.00012 41_[+1]_71 chr3R:26552365-26552485 0.00012 73_[+1]_39 chr3L:22989644-22989764 0.00012 79_[+1]_33 chrX:6638312-6638432 0.00016 94_[+1]_18 chr3L:7996499-7996619 0.00016 6_[+1]_106 chr3R:21598199-21598319 0.00016 1_[+1]_111 chr2R:17435609-17435729 0.00016 31_[+1]_81 chr2L:18475854-18475974 0.00016 89_[+1]_23 chr2L:8100110-8100230 0.00016 [+1]_112 chr3L:7005565-7005685 0.00016 47_[+1]_65 chr3R:10679846-10679966 0.00016 57_[+1]_55 chr2R:16802445-16802565 0.00016 46_[+1]_66 chr2R:19331386-19331506 0.00016 27_[+1]_85 chr3R:11451351-11451471 0.00019 56_[+1]_56 chr3R:22056326-22056446 0.00019 72_[+1]_40 chr3R:9483896-9484016 0.00021 15_[+1]_97 chr3R:9944624-9944744 0.00024 45_[+1]_67 chr2R:17087604-17087724 0.00024 102_[+1]_10 chrX:12219662-12219782 0.00024 60_[+1]_52 chr2R:23740440-23740560 0.00024 31_[+1]_81 chr3R:23967542-23967662 0.00024 67_[+1]_45 chr3L:17808931-17809051 0.00029 56_[+1]_56 chr3L:34772-34892 0.00029 101_[+1]_11 chr2R:17793754-17793874 0.00029 108_[+1]_4 chr2R:9938100-9938220 0.00029 57_[+1]_55 chr3L:15073854-15073974 0.00029 84_[+1]_28 chr3R:30779769-30779889 0.00029 58_[+1]_54 chr3L:20901154-20901274 0.00037 19_[+1]_93 chr3L:14549372-14549492 0.00037 24_[+1]_88 chr2R:9941716-9941836 0.00037 60_[+1]_52 chr3R:30921718-30921838 0.00041 63_[+1]_49 chr2L:20066717-20066837 0.00044 66_[+1]_46 chr2L:20478658-20478778 0.00047 29_[+1]_83 chr3R:14599247-14599367 0.00054 69_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAGCTGY width=8 seqs=133 chr2L:1738274-1738394 ( 82) GCAGCTGC 1 chr3R:17783296-17783416 ( 39) GCAGCTGC 1 chr2R:8336211-8336331 ( 87) GCAGCTGC 1 chrX:22963584-22963704 ( 6) GCAGCTGC 1 chr3L:18190905-18191025 ( 111) GCAGCTGC 1 chr3R:7075047-7075167 ( 92) GCAGCTGC 1 chr2L:7525143-7525263 ( 48) GCAGCTGC 1 chr3R:10265275-10265395 ( 100) GCAGCTGC 1 chr2R:8755757-8755877 ( 79) GCAGCTGC 1 chr2R:9938302-9938422 ( 53) GCAGCTGC 1 chr2L:14506847-14506967 ( 33) GCAGCTGC 1 chr2L:14499656-14499776 ( 57) GCAGCTGC 1 chr2R:21201802-21201922 ( 85) GCAGCTGC 1 chr3R:22172562-22172682 ( 7) GCAGCTGC 1 chr3L:21380251-21380371 ( 20) GCAGCTGC 1 chr3R:10275303-10275423 ( 70) GCAGCTGC 1 chr2L:21887730-21887850 ( 110) GCAGCTGC 1 chr3L:19940223-19940343 ( 41) GCAGCTGC 1 chr3L:7837930-7838050 ( 56) GCAGCTGC 1 chr2R:7696125-7696245 ( 84) GCAGCTGC 1 chr3L:643471-643591 ( 33) GCAGCTGC 1 chr3L:786963-787083 ( 69) GCAGCTGC 1 chr3R:30767680-30767800 ( 66) GCAGCTGC 1 chr3L:8029308-8029428 ( 47) GCAGCTGT 1 chr2L:14513382-14513502 ( 83) GCAGCTGT 1 chr3L:15178999-15179119 ( 50) GCAGCTGT 1 chr2L:7522483-7522603 ( 43) GCAGCTGT 1 chr3L:786102-786222 ( 17) GCAGCTGT 1 chr3L:9690976-9691096 ( 41) GCAGCTGT 1 chr3R:29476428-29476548 ( 58) GCAGCTGT 1 chrX:4936679-4936799 ( 93) GCAGCTGT 1 chr3L:10659650-10659770 ( 58) GCAGCTGT 1 chr3L:15101667-15101787 ( 74) GCAGCTGT 1 chr3R:16556971-16557091 ( 45) GCAGCTGT 1 chr3L:109234-109354 ( 55) GCAGCTGT 1 chr3R:20168132-20168252 ( 89) GCAGCTGT 1 chr2L:94233-94353 ( 68) GCAGCTGT 1 chr2R:21853406-21853526 ( 12) GCAGCTGT 1 chr2R:17478082-17478202 ( 56) GCAGCTGT 1 chr2R:17107777-17107897 ( 58) GCAGCTGT 1 chr3R:13978067-13978187 ( 31) GCAGCTGT 1 chr3L:3934286-3934406 ( 68) GCAGCTGT 1 chr2R:24273827-24273947 ( 64) GCAGCTGT 1 chr3R:30541624-30541744 ( 43) GCAGCTGT 1 chr3R:15465538-15465658 ( 57) GCAGCTGT 1 chr2L:5150050-5150170 ( 57) GCAGCTGT 1 chr2L:14476816-14476936 ( 61) GCAGCTGT 1 chr3L:22401663-22401783 ( 40) ACAGCTGC 1 chrX:13304312-13304432 ( 76) ACAGCTGC 1 chr3R:15463511-15463631 ( 72) ACAGCTGC 1 chrX:5994914-5995034 ( 29) ACAGCTGC 1 chr2R:16095654-16095774 ( 86) ACAGCTGC 1 chrX:10733254-10733374 ( 78) ACAGCTGC 1 chr2L:5116688-5116808 ( 73) ACAGCTGC 1 chr3L:19908411-19908531 ( 82) ACAGCTGC 1 chr2R:12744757-12744877 ( 36) ACAGCTGC 1 chr3R:10266980-10267100 ( 54) ACAGCTGC 1 chr2R:9266425-9266545 ( 26) ACAGCTGC 1 chr2R:6946549-6946669 ( 36) ACAGCTGC 1 chr3L:6704408-6704528 ( 17) ACAGCTGC 1 chr2R:17310862-17310982 ( 65) ACAGCTGC 1 chr2R:21641896-21642016 ( 39) ACAGCTGC 1 chr2R:12595725-12595845 ( 83) ACAGCTGC 1 chr3R:25548324-25548444 ( 71) ACAGCTGC 1 chr2R:22655493-22655613 ( 74) ACAGCTGC 1 chrX:13817979-13818099 ( 33) ACAGCTGC 1 chr2L:17571655-17571775 ( 76) ACAGCTGC 1 chr3L:22390448-22390568 ( 57) ACAGCTGC 1 chr3L:2136558-2136678 ( 37) ACAGCTGC 1 chr3R:19621124-19621244 ( 55) ACAGCTGT 1 chr2L:20886147-20886267 ( 58) ACAGCTGT 1 chr3L:2469794-2469914 ( 54) ACAGCTGT 1 chr3L:19340650-19340770 ( 29) ACAGCTGT 1 chr3L:13489374-13489494 ( 72) ACAGCTGT 1 chr3R:9144456-9144576 ( 20) ACAGCTGT 1 chrX:13451200-13451320 ( 52) ACAGCTGT 1 chr3L:16057640-16057760 ( 63) ACAGCTGT 1 chr2L:7572002-7572122 ( 95) ACAGCTGT 1 chrX:9636944-9637064 ( 42) ACAGCTGT 1 chr2R:20036120-20036240 ( 56) ACAGCTGT 1 chr3L:13479329-13479449 ( 104) ACAGCTGT 1 chr2R:18325842-18325962 ( 47) ACAGCTGT 1 chr2L:14377844-14377964 ( 76) ACAGCTGT 1 chrX:9139258-9139378 ( 71) GCAGCTGG 1 chr3R:6414511-6414631 ( 41) GCAGCTGG 1 chr3L:21379484-21379604 ( 16) GCAGCTGG 1 chr2R:24279754-24279874 ( 55) GCAGCTGG 1 chr3R:10093748-10093868 ( 5) GCAGCTGA 1 chr3R:16349244-16349364 ( 9) GCAGCTGA 1 chr3L:22402858-22402978 ( 45) GCAGCTGA 1 chr3L:536451-536571 ( 24) GCAGCTGA 1 chr3R:27425594-27425714 ( 70) GCAGCTGA 1 chr3L:3411170-3411290 ( 35) ACAGCTGG 1 chr3R:12562363-12562483 ( 66) ACAGCTGG 1 chr3R:10106323-10106443 ( 87) CCAGCTGC 1 chr3L:3523885-3524005 ( 74) TCAGCTGC 1 chr3R:13776994-13777114 ( 84) ACAGCTGG 1 chr3L:2745091-2745211 ( 60) TCAGCTGC 1 chr3R:24026674-24026794 ( 108) ACAGCTGG 1 chr4:558727-558847 ( 42) ACAGCTGA 1 chr3R:26552365-26552485 ( 74) ACAGCTGA 1 chr3L:22989644-22989764 ( 80) ACAGCTGA 1 chrX:6638312-6638432 ( 95) GCTGCTGC 1 chr3L:7996499-7996619 ( 7) CCAGCTGT 1 chr3R:21598199-21598319 ( 2) GCTGCTGC 1 chr2R:17435609-17435729 ( 32) CCAGCTGT 1 chr2L:18475854-18475974 ( 90) GCTGCTGC 1 chr2L:8100110-8100230 ( 1) TCAGCTGT 1 chr3L:7005565-7005685 ( 48) CCAGCTGT 1 chr3R:10679846-10679966 ( 58) TCAGCTGT 1 chr2R:16802445-16802565 ( 47) TCAGCTGT 1 chr2R:19331386-19331506 ( 28) TCAGCTGT 1 chr3R:11451351-11451471 ( 57) GCAGGTGC 1 chr3R:22056326-22056446 ( 73) GCGGCTGC 1 chr3R:9483896-9484016 ( 16) ACTGCTGC 1 chr3R:9944624-9944744 ( 46) GCAGCAGC 1 chr2R:17087604-17087724 ( 103) GCAGCAGC 1 chrX:12219662-12219782 ( 61) GCGGCTGT 1 chr2R:23740440-23740560 ( 32) GCGGCTGT 1 chr3R:23967542-23967662 ( 68) GCGGCTGT 1 chr3L:17808931-17809051 ( 57) GCAGCTCC 1 chr3L:34772-34892 ( 102) GCAGCTCC 1 chr2R:17793754-17793874 ( 109) GCAGCTCC 1 chr2R:9938100-9938220 ( 58) ACAGGTGC 1 chr3L:15073854-15073974 ( 85) ACAGGTGC 1 chr3R:30779769-30779889 ( 59) ACAGGTGC 1 chr3L:20901154-20901274 ( 20) ACAGCAGC 1 chr3L:14549372-14549492 ( 25) ACAGGTGT 1 chr2R:9941716-9941836 ( 61) TCAGCTGG 1 chr3R:30921718-30921838 ( 64) CCAGCTGA 1 chr2L:20066717-20066837 ( 67) GCTGCTGG 1 chr2L:20478658-20478778 ( 30) GCTGCTGA 1 chr3R:14599247-14599367 ( 70) CCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.48383 E= 2.0e-123 44 -235 123 -237 -1370 212 -1370 -1370 176 -1370 -292 -237 -1370 -1370 214 -1370 -1370 207 -260 -1370 -359 -1370 -1370 185 -1370 -335 210 -1370 -185 107 -160 44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 2.0e-123 0.368421 0.045113 0.533835 0.052632 0.000000 1.000000 0.000000 0.000000 0.917293 0.000000 0.030075 0.052632 0.000000 0.000000 1.000000 0.000000 0.000000 0.962406 0.037594 0.000000 0.022556 0.000000 0.000000 0.977444 0.000000 0.022556 0.977444 0.000000 0.075188 0.481203 0.075188 0.368421 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CAGCTG[CT] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTGTKTR MEME-2 width = 8 sites = 62 llr = 474 E-value = 2.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::3:::3 pos.-specific C :1:::::: probability G :3:7:4:5 matrix T a6a:a6a2 bits 2.1 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * *** * Entropy 1.1 * ***** (11.0 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTG consensus G A G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16431168-16431288 83 2.09e-05 tatttgtttg tttgtttg tttaccatta chr2L:14307667-14307787 67 2.09e-05 CTATGCTATT TTTGTTTG TCTTTACTAA chr2L:3114257-3114377 12 2.09e-05 CAATCATACT TTTGTTTG TCACATTCTG chr3R:21660648-21660768 91 2.09e-05 GCCTTCATAC TTTGTTTG TTCTTTCGCA chr3L:16429580-16429700 52 2.09e-05 AATGTTTCTT TTTGTTTG TTCCATAACA chr3R:14472716-14472836 27 2.09e-05 TGTTTCTCTA TTTGTTTG CGTTGCCGTG chrX:4936679-4936799 47 2.09e-05 GTTGATATTC TTTGTTTG AACTGCGACT chr3R:21271285-21271405 7 5.57e-05 AACTAA TGTGTTTG TATGTTGAAT chr3L:34772-34892 13 5.57e-05 ACGCGCCTTT TGTGTTTG GCTTGTGGCT chr2R:23627713-23627833 5 5.57e-05 TCGT TTTGTGTG GGCGCCGCAA chr3R:7075047-7075167 81 5.57e-05 tgtgcgtgcg tttgtgtg agtgCAGCTG chr2R:23740440-23740560 15 5.57e-05 TTGAATATTT TGTGTTTG TATTTGTCTG chr3R:26552365-26552485 96 5.57e-05 CTTGTGCTGT TTTGTGTG GCATAGCCAT chr3R:13013983-13014103 26 5.57e-05 TTTGTTGTTG TGTGTTTG CCGCCGACTG chr3L:41535-41655 89 5.57e-05 TCCGCTTGTA TTTGTGTG CGTTCATGAG chr3L:11345672-11345792 81 8.06e-05 CAAATTCGAA TTTGTTTA CATGCACACA chr4:558727-558847 113 8.06e-05 GGGATATTAG TTTGTTTA chr2L:20886147-20886267 20 8.06e-05 CCTATTTTCG TTTGTTTA TGCATTTCAC chr2L:14558997-14559117 35 8.06e-05 GACACATTTA TTTGTTTA ATGAGACGTT chr2L:9679879-9679999 105 8.06e-05 GCCCACGGAA TTTGTTTA CACAGCTG chr3R:30779769-30779889 35 8.06e-05 TTTTGTTATT TTTGTTTA CGCATTTCGT chr2R:15531562-15531682 21 1.20e-04 TGTCATTCAC TTTGTTTT GCTTTTGCTT chrX:3695783-3695903 22 1.20e-04 TATTGTTGTT TTTGTTTT TGGCCTGCCT chr3L:15597149-15597269 87 1.20e-04 TCAATTATCT TGTGTGTG ATATTTCACT chr3R:10093748-10093868 92 1.20e-04 TACGTGGCTC tgtgtgtg tgtgcggtgt chr2R:6870188-6870308 10 1.20e-04 ACACAGGCG TGTGTGTG TTGAAGGTTC chr3L:20901154-20901274 68 1.20e-04 ACAGATTCGG TGTGTGTG TTTAACATAA chr3L:7996499-7996619 19 1.20e-04 AGCTGTTAAT TGTGTGTG ATCTTGAGCA chr3L:9690976-9691096 101 1.20e-04 TTCGTTTTCC TTTGTTTT TTACGTATTT chr3R:30111189-30111309 26 1.20e-04 GTGCGAGGAC TGTGTGTG ATTGATGCCT chr3L:22390448-22390568 69 1.20e-04 AGCTGCCACA TGTGTGTG CCCCATGCCC chr3R:15465538-15465658 86 1.20e-04 AGGCAATTAG TTTGTTTT CACTTTGACA chr3L:17008752-17008872 76 1.87e-04 AACAAATACA TTTATTTG GCTCGAGTGG chr3L:11384127-11384247 65 1.87e-04 CTTCTTTTGT TTTGTGTA CTTTTCGTGG chr3L:16494909-16495029 80 1.87e-04 GAATGTTTCC TTTATTTG CGTTTTGTGA chr3L:16889718-16889838 36 1.87e-04 ACTCAAAGGC TTTGTGTA TTTTTAGTGC chr3L:10659650-10659770 6 1.87e-04 TTTTA TTTATTTG GAGCACTGAA chr2L:20478658-20478778 67 1.87e-04 GAAAGCGTTA TTTATTTG TGGCACAAGC chr2L:8100110-8100230 68 2.28e-04 AATATGCTCG TTTGTGTT GTGTAGCCCC chr3R:9483896-9484016 81 2.28e-04 AGCGTATGAA TGTGTTTT GGGCCAACGA chr3L:8029308-8029428 23 2.87e-04 TGCCAGCTGT TGTGTGTA TAGTTAACTA chr3R:11993438-11993558 41 2.87e-04 tatgtatgta tgtgtgta tttacatatg chr3L:12045571-12045691 34 2.87e-04 AGTATCTATC TGTATTTG CCCGACGCTT chr2L:5247956-5248076 49 2.87e-04 CGTTTGTATC TGTGTGTA CCTGCCGGTG chr3L:2745091-2745211 95 2.87e-04 TTACATGGAA TGTGTGTA GCCGGATTTT chr2L:14537000-14537120 32 3.17e-04 TAAATTTCGT TTTATTTA TGAGCATTTA chr3R:9944624-9944744 113 3.17e-04 GGCTATATGT TTTATTTA chr3L:17808931-17809051 41 3.17e-04 AAGCAACAAG TTTATTTA ATAACCGAGC chr2R:22655493-22655613 85 3.17e-04 CAGCTGCCGG TTTATTTA TAGATCATTT chrX:5357130-5357250 74 3.17e-04 AAATGGGATT TTTATTTA CGAAACAAAC chr2L:7528230-7528350 9 3.34e-04 ATTCAACA TGTGTGTT ATCAGTGAGG chr3L:6612792-6612912 30 3.52e-04 TGCCCACTGT TCTGTTTG CATTGCTTAT chr2R:21549008-21549128 26 3.52e-04 TCTGGCGGTG TCTGTTTG CACAGTACTT chr3R:19467588-19467708 38 3.99e-04 TTGTGCCATG TTTATTTT TAGTTGCGTA chr3L:19340650-19340770 91 3.99e-04 TTTCGTCTAC TTTATTTT TGAACATTTC chrX:17716996-17717116 102 3.99e-04 AATTGAAAAG TTTATTTT ATTAGTAATT chrX:13817979-13818099 9 3.99e-04 GGGTTGTT TTTATTTT GGGAACCAGT chr2R:8755757-8755877 46 4.64e-04 aatagaaata tCTGTGTG CAAGATTTAG chr2L:1738274-1738394 1 5.13e-04 . TTTATGTT TTATTTCCCA chr3L:21112106-21112226 61 5.13e-04 CATGCCAAAA TGTATTTT TTTCCCCCCA chr3R:13978067-13978187 2 5.55e-04 t tgtatgta gatgttgctg chr2R:19331386-19331506 13 5.76e-04 ttcattttca tctgtttt gtcgagttca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16431168-16431288 2.1e-05 82_[+2]_30 chr2L:14307667-14307787 2.1e-05 66_[+2]_46 chr2L:3114257-3114377 2.1e-05 11_[+2]_101 chr3R:21660648-21660768 2.1e-05 90_[+2]_22 chr3L:16429580-16429700 2.1e-05 51_[+2]_61 chr3R:14472716-14472836 2.1e-05 26_[+2]_86 chrX:4936679-4936799 2.1e-05 46_[+2]_66 chr3R:21271285-21271405 5.6e-05 6_[+2]_106 chr3L:34772-34892 5.6e-05 12_[+2]_100 chr2R:23627713-23627833 5.6e-05 4_[+2]_108 chr3R:7075047-7075167 5.6e-05 80_[+2]_32 chr2R:23740440-23740560 5.6e-05 14_[+2]_98 chr3R:26552365-26552485 5.6e-05 95_[+2]_17 chr3R:13013983-13014103 5.6e-05 25_[+2]_87 chr3L:41535-41655 5.6e-05 88_[+2]_24 chr3L:11345672-11345792 8.1e-05 80_[+2]_32 chr4:558727-558847 8.1e-05 112_[+2] chr2L:20886147-20886267 8.1e-05 19_[+2]_93 chr2L:14558997-14559117 8.1e-05 34_[+2]_78 chr2L:9679879-9679999 8.1e-05 104_[+2]_8 chr3R:30779769-30779889 8.1e-05 34_[+2]_78 chr2R:15531562-15531682 0.00012 20_[+2]_92 chrX:3695783-3695903 0.00012 21_[+2]_91 chr3L:15597149-15597269 0.00012 86_[+2]_26 chr3R:10093748-10093868 0.00012 91_[+2]_21 chr2R:6870188-6870308 0.00012 9_[+2]_103 chr3L:20901154-20901274 0.00012 67_[+2]_45 chr3L:7996499-7996619 0.00012 18_[+2]_94 chr3L:9690976-9691096 0.00012 100_[+2]_12 chr3R:30111189-30111309 0.00012 25_[+2]_87 chr3L:22390448-22390568 0.00012 68_[+2]_44 chr3R:15465538-15465658 0.00012 85_[+2]_27 chr3L:17008752-17008872 0.00019 75_[+2]_37 chr3L:11384127-11384247 0.00019 64_[+2]_48 chr3L:16494909-16495029 0.00019 79_[+2]_33 chr3L:16889718-16889838 0.00019 35_[+2]_77 chr3L:10659650-10659770 0.00019 5_[+2]_107 chr2L:20478658-20478778 0.00019 66_[+2]_46 chr2L:8100110-8100230 0.00023 67_[+2]_45 chr3R:9483896-9484016 0.00023 80_[+2]_32 chr3L:8029308-8029428 0.00029 22_[+2]_90 chr3R:11993438-11993558 0.00029 40_[+2]_72 chr3L:12045571-12045691 0.00029 33_[+2]_79 chr2L:5247956-5248076 0.00029 48_[+2]_64 chr3L:2745091-2745211 0.00029 94_[+2]_18 chr2L:14537000-14537120 0.00032 31_[+2]_81 chr3R:9944624-9944744 0.00032 112_[+2] chr3L:17808931-17809051 0.00032 40_[+2]_72 chr2R:22655493-22655613 0.00032 84_[+2]_28 chrX:5357130-5357250 0.00032 73_[+2]_39 chr2L:7528230-7528350 0.00033 8_[+2]_104 chr3L:6612792-6612912 0.00035 29_[+2]_83 chr2R:21549008-21549128 0.00035 25_[+2]_87 chr3R:19467588-19467708 0.0004 37_[+2]_75 chr3L:19340650-19340770 0.0004 90_[+2]_22 chrX:17716996-17717116 0.0004 101_[+2]_11 chrX:13817979-13818099 0.0004 8_[+2]_104 chr2R:8755757-8755877 0.00046 45_[+2]_67 chr2L:1738274-1738394 0.00051 [+2]_112 chr3L:21112106-21112226 0.00051 60_[+2]_52 chr3R:13978067-13978187 0.00056 1_[+2]_111 chr2R:19331386-19331506 0.00058 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTGTKTR width=8 seqs=62 chr3L:16431168-16431288 ( 83) TTTGTTTG 1 chr2L:14307667-14307787 ( 67) TTTGTTTG 1 chr2L:3114257-3114377 ( 12) TTTGTTTG 1 chr3R:21660648-21660768 ( 91) TTTGTTTG 1 chr3L:16429580-16429700 ( 52) TTTGTTTG 1 chr3R:14472716-14472836 ( 27) TTTGTTTG 1 chrX:4936679-4936799 ( 47) TTTGTTTG 1 chr3R:21271285-21271405 ( 7) TGTGTTTG 1 chr3L:34772-34892 ( 13) TGTGTTTG 1 chr2R:23627713-23627833 ( 5) TTTGTGTG 1 chr3R:7075047-7075167 ( 81) TTTGTGTG 1 chr2R:23740440-23740560 ( 15) TGTGTTTG 1 chr3R:26552365-26552485 ( 96) TTTGTGTG 1 chr3R:13013983-13014103 ( 26) TGTGTTTG 1 chr3L:41535-41655 ( 89) TTTGTGTG 1 chr3L:11345672-11345792 ( 81) TTTGTTTA 1 chr4:558727-558847 ( 113) TTTGTTTA 1 chr2L:20886147-20886267 ( 20) TTTGTTTA 1 chr2L:14558997-14559117 ( 35) TTTGTTTA 1 chr2L:9679879-9679999 ( 105) TTTGTTTA 1 chr3R:30779769-30779889 ( 35) TTTGTTTA 1 chr2R:15531562-15531682 ( 21) TTTGTTTT 1 chrX:3695783-3695903 ( 22) TTTGTTTT 1 chr3L:15597149-15597269 ( 87) TGTGTGTG 1 chr3R:10093748-10093868 ( 92) TGTGTGTG 1 chr2R:6870188-6870308 ( 10) TGTGTGTG 1 chr3L:20901154-20901274 ( 68) TGTGTGTG 1 chr3L:7996499-7996619 ( 19) TGTGTGTG 1 chr3L:9690976-9691096 ( 101) TTTGTTTT 1 chr3R:30111189-30111309 ( 26) TGTGTGTG 1 chr3L:22390448-22390568 ( 69) TGTGTGTG 1 chr3R:15465538-15465658 ( 86) TTTGTTTT 1 chr3L:17008752-17008872 ( 76) TTTATTTG 1 chr3L:11384127-11384247 ( 65) TTTGTGTA 1 chr3L:16494909-16495029 ( 80) TTTATTTG 1 chr3L:16889718-16889838 ( 36) TTTGTGTA 1 chr3L:10659650-10659770 ( 6) TTTATTTG 1 chr2L:20478658-20478778 ( 67) TTTATTTG 1 chr2L:8100110-8100230 ( 68) TTTGTGTT 1 chr3R:9483896-9484016 ( 81) TGTGTTTT 1 chr3L:8029308-8029428 ( 23) TGTGTGTA 1 chr3R:11993438-11993558 ( 41) TGTGTGTA 1 chr3L:12045571-12045691 ( 34) TGTATTTG 1 chr2L:5247956-5248076 ( 49) TGTGTGTA 1 chr3L:2745091-2745211 ( 95) TGTGTGTA 1 chr2L:14537000-14537120 ( 32) TTTATTTA 1 chr3R:9944624-9944744 ( 113) TTTATTTA 1 chr3L:17808931-17809051 ( 41) TTTATTTA 1 chr2R:22655493-22655613 ( 85) TTTATTTA 1 chrX:5357130-5357250 ( 74) TTTATTTA 1 chr2L:7528230-7528350 ( 9) TGTGTGTT 1 chr3L:6612792-6612912 ( 30) TCTGTTTG 1 chr2R:21549008-21549128 ( 26) TCTGTTTG 1 chr3R:19467588-19467708 ( 38) TTTATTTT 1 chr3L:19340650-19340770 ( 91) TTTATTTT 1 chrX:17716996-17717116 ( 102) TTTATTTT 1 chrX:13817979-13818099 ( 9) TTTATTTT 1 chr2R:8755757-8755877 ( 46) TCTGTGTG 1 chr2L:1738274-1738394 ( 1) TTTATGTT 1 chr3L:21112106-21112226 ( 61) TGTATTTT 1 chr3R:13978067-13978187 ( 2) TGTATGTA 1 chr2R:19331386-19331506 ( 13) TCTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1293 E= 2.1e+001 -1260 -1260 -1260 188 -1260 -183 50 117 -1260 -1260 -1260 188 2 -1260 167 -1260 -1260 -1260 -1260 188 -1260 -1260 64 125 -1260 -1260 -1260 188 10 -1260 109 -27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 2.1e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.064516 0.322581 0.612903 0.000000 0.000000 0.000000 1.000000 0.274194 0.000000 0.725806 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.354839 0.645161 0.000000 0.000000 0.000000 1.000000 0.290323 0.000000 0.483871 0.225806 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTKTR MEME-2 regular expression -------------------------------------------------------------------------------- T[TG]T[GA]T[TG]T[GAT] -------------------------------------------------------------------------------- Time 13.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCCAC MEME-3 width = 8 sites = 20 llr = 192 E-value = 4.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:31::9: pos.-specific C 9a:aa91a probability G ::8::11: matrix T 1::::::: bits 2.1 * * * 1.9 * ** * 1.7 * *** * 1.5 ** *** * Relative 1.3 ****** * Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15802144-15802264 20 9.11e-06 CCCCCACGTA CCGCCCAC TCGAAGCCAA chr3R:21602331-21602451 64 9.11e-06 CTGCCACCGT CCGCCCAC TTTTCACGCG chrX:18116911-18117031 28 9.11e-06 CAAACGTTAG CCGCCCAC CTGCCCACCG chr2R:21853406-21853526 63 9.11e-06 CCATTCTTGC CCGCCCAC AATTGTGAAC chr3R:13978067-13978187 74 9.11e-06 GGCACGCAAG CCGCCCAC GCCCATTAAT chr2L:14376571-14376691 37 9.11e-06 TAGCCATTAG CCGCCCAC AAATGTAGTG chr3R:30541624-30541744 21 9.11e-06 GACCAACTTC CCGCCCAC GGCCACCCAC chr3L:16889718-16889838 16 2.00e-05 GGCACACCAA CCACCCAC TCACTCAAAG chr3L:15178999-15179119 32 2.00e-05 CCTTTAAATT CCACCCAC CTATTTGGGA chrX:2457376-2457496 50 2.00e-05 CTTCGCCCAC CCACCCAC ACACACAGTT chr2R:21641896-21642016 30 2.00e-05 AATATGATGC CCACCCAC AACAGCTGCG chr3L:21380251-21380371 50 2.00e-05 CAGCGAGGCG CCACCCAC TCAATGCCAA chr3L:20901154-20901274 43 2.76e-05 TCCCACTCAC CCGCCCGC TCTGCCTACA chrX:13304312-13304432 61 2.76e-05 GGCAGAACGG CCGCCCGC CCCCACAACA chr2R:23740440-23740560 102 3.66e-05 CGCCTGCCGA CCGCCGAC CGCCAAAGTG chr3R:13013983-13014103 34 3.66e-05 TGTGTGTTTG CCGCCGAC TGCGCGCGTG chr3L:536451-536571 99 4.43e-05 CCTTTCCTAC CCGCCCCC TCCAGAAAGA chr3L:16494909-16495029 1 7.66e-05 . CCGACCAC ATGCTGACAC chr2L:7711152-7711272 68 7.66e-05 CACCATTAAT TCGCCCAC ATAGCCACCT chr3R:22171696-22171816 27 7.66e-05 TTACGACAAC ACGCCCAC ACGACATCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15802144-15802264 9.1e-06 19_[+3]_93 chr3R:21602331-21602451 9.1e-06 63_[+3]_49 chrX:18116911-18117031 9.1e-06 27_[+3]_85 chr2R:21853406-21853526 9.1e-06 62_[+3]_50 chr3R:13978067-13978187 9.1e-06 73_[+3]_39 chr2L:14376571-14376691 9.1e-06 36_[+3]_76 chr3R:30541624-30541744 9.1e-06 20_[+3]_92 chr3L:16889718-16889838 2e-05 15_[+3]_97 chr3L:15178999-15179119 2e-05 31_[+3]_81 chrX:2457376-2457496 2e-05 49_[+3]_63 chr2R:21641896-21642016 2e-05 29_[+3]_83 chr3L:21380251-21380371 2e-05 49_[+3]_63 chr3L:20901154-20901274 2.8e-05 42_[+3]_70 chrX:13304312-13304432 2.8e-05 60_[+3]_52 chr2R:23740440-23740560 3.7e-05 101_[+3]_11 chr3R:13013983-13014103 3.7e-05 33_[+3]_79 chr3L:536451-536571 4.4e-05 98_[+3]_14 chr3L:16494909-16495029 7.7e-05 [+3]_112 chr2L:7711152-7711272 7.7e-05 67_[+3]_45 chr3R:22171696-22171816 7.7e-05 26_[+3]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCCAC width=8 seqs=20 chr2R:15802144-15802264 ( 20) CCGCCCAC 1 chr3R:21602331-21602451 ( 64) CCGCCCAC 1 chrX:18116911-18117031 ( 28) CCGCCCAC 1 chr2R:21853406-21853526 ( 63) CCGCCCAC 1 chr3R:13978067-13978187 ( 74) CCGCCCAC 1 chr2L:14376571-14376691 ( 37) CCGCCCAC 1 chr3R:30541624-30541744 ( 21) CCGCCCAC 1 chr3L:16889718-16889838 ( 16) CCACCCAC 1 chr3L:15178999-15179119 ( 32) CCACCCAC 1 chrX:2457376-2457496 ( 50) CCACCCAC 1 chr2R:21641896-21642016 ( 30) CCACCCAC 1 chr3L:21380251-21380371 ( 50) CCACCCAC 1 chr3L:20901154-20901274 ( 43) CCGCCCGC 1 chrX:13304312-13304432 ( 61) CCGCCCGC 1 chr2R:23740440-23740560 ( 102) CCGCCGAC 1 chr3R:13013983-13014103 ( 34) CCGCCGAC 1 chr3L:536451-536571 ( 99) CCGCCCCC 1 chr3L:16494909-16495029 ( 1) CCGACCAC 1 chr2L:7711152-7711272 ( 68) TCGCCCAC 1 chr3R:22171696-22171816 ( 27) ACGCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 4.3e+001 -244 197 -1097 -244 -1097 212 -1097 -1097 -12 -1097 172 -1097 -244 205 -1097 -1097 -1097 212 -1097 -1097 -1097 197 -118 -1097 165 -220 -118 -1097 -1097 212 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.3e+001 0.050000 0.900000 0.000000 0.050000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.050000 0.950000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.850000 0.050000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 regular expression -------------------------------------------------------------------------------- CC[GA]CCCAC -------------------------------------------------------------------------------- Time 19.42 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCCCC MEME-4 width = 8 sites = 7 llr = 79 E-value = 1.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::aaaaa probability G :::::::: matrix T aaa::::: bits 2.1 ***** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2906235-2906355 34 1.30e-05 AGAATTCTTT TTTCCCCC TTGTGGTTTC chr3R:6414511-6414631 9 1.30e-05 AAATCCCT TTTCCCCC TAACCCCTCG chrX:5994914-5995034 85 1.30e-05 CTCTAAAGTG TTTCCCCC CCTGTCGAAA chr3R:9144456-9144576 98 1.30e-05 CGCGGGGGAG TTTCCCCC TGGCCATTTG chr3L:21112106-21112226 69 1.30e-05 AATGTATTTT TTTCCCCC CAAGATGAGG chr3L:2745091-2745211 110 1.30e-05 GTAGCCGGAT TTTCCCCC CTG chr2R:9941716-9941836 86 1.30e-05 CTCTCATAAA TTTCCCCC TCAATATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2906235-2906355 1.3e-05 33_[+4]_79 chr3R:6414511-6414631 1.3e-05 8_[+4]_104 chrX:5994914-5995034 1.3e-05 84_[+4]_28 chr3R:9144456-9144576 1.3e-05 97_[+4]_15 chr3L:21112106-21112226 1.3e-05 68_[+4]_44 chr3L:2745091-2745211 1.3e-05 109_[+4]_3 chr2R:9941716-9941836 1.3e-05 85_[+4]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCCCC width=8 seqs=7 chr2L:2906235-2906355 ( 34) TTTCCCCC 1 chr3R:6414511-6414631 ( 9) TTTCCCCC 1 chrX:5994914-5995034 ( 85) TTTCCCCC 1 chr3R:9144456-9144576 ( 98) TTTCCCCC 1 chr3L:21112106-21112226 ( 69) TTTCCCCC 1 chr3L:2745091-2745211 ( 110) TTTCCCCC 1 chr2R:9941716-9941836 ( 86) TTTCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.1e+005 -945 -945 -945 188 -945 -945 -945 188 -945 -945 -945 188 -945 212 -945 -945 -945 212 -945 -945 -945 212 -945 -945 -945 212 -945 -945 -945 212 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.1e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- TTTCCCCC -------------------------------------------------------------------------------- Time 25.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAACAA MEME-5 width = 8 sites = 35 llr = 296 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a83a93aa pos.-specific C ::6::7:: probability G :2::1::: matrix T ::1::::: bits 2.1 1.9 * * ** 1.7 * * ** 1.5 * ** ** Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.2 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACAACAA consensus GA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9944624-9944744 10 2.10e-05 GACAGAAAT AACAACAA CCATAGCCGA chr2R:15802144-15802264 86 2.10e-05 TTTTTGAACG AACAACAA TATTTACAAA chr3L:16429580-16429700 90 2.10e-05 GTAAATAGCA AACAACAA ATAGTAAATT chrX:22963584-22963704 51 2.10e-05 AAACAAGAAA AACAACAA GGTCGACAGC chr2R:16095654-16095774 44 2.10e-05 caagagcaac aacaacaa acaGCGATCC chr2R:17793754-17793874 93 2.10e-05 TAAAGGCCAG AACAACAA CTACGGTGGC chrX:9121443-9121563 97 2.10e-05 CTGACAGCCG AACAACAA AAGCAACAAC chr2R:17310862-17310982 76 2.10e-05 CAGCTGCAAT AACAACAA ATAAGTAACG chr3R:22172562-22172682 31 2.10e-05 AGGcaacaaa aacaacaa aaacgacaac chr3L:7837930-7838050 93 2.10e-05 TAATTTTACT AACAACAA CACTTTTCGT chr2R:17435609-17435729 109 4.56e-05 CGACTCGTGC AAAAACAA ACAC chrX:9122661-9122781 33 4.56e-05 AAAAAACAAA AAAAACAA CACAGACATC chr2R:13245281-13245401 8 4.56e-05 CCGTGGG AAAAACAA GAAAAGCCTG chr3R:24026674-24026794 14 4.56e-05 GCTACAGCGA AAAAACAA AAATTCAGCC chr3L:22175707-22175827 85 7.03e-05 TCTCGTGGGG AACAAAAA ATTAGAACAA chr2R:9941716-9941836 34 7.03e-05 ATCACACAGA AACAAAAA AAGTAAACAT chr3L:17808931-17809051 32 8.79e-05 AGAAGCCACA AGCAACAA GTTTATTTAA chr3L:7996499-7996619 33 8.79e-05 TGTGATCTTG AGCAACAA GCCAAACATG chr2R:6746202-6746322 16 8.79e-05 TAGCTGTGAA AGCAACAA ATTGGTTCTA chrX:13645180-13645300 51 8.79e-05 CAACAAACAA AGCAACAA CACACAAAAC chr3R:10265275-10265395 24 8.79e-05 ACAAATGAAA AGCAACAA ACAAAAGAGA chr2L:14499656-14499776 2 8.79e-05 a agcaacaa gaaagcaaaa chr3L:19940223-19940343 14 8.79e-05 ACCGAATTAA AGCAACAA ATTAAATTAA chrX:772784-772904 46 1.13e-04 GCTCGGACTC AATAACAA AGATCGCATT chr3R:15463511-15463631 92 1.13e-04 CTCCAGCGAG AATAACAA Gagcatcagc chr3R:21598199-21598319 46 1.13e-04 TGTCAATGTC AATAACAA GATCGTTTCT chr3L:16657182-16657302 88 1.42e-04 TTTTAACTAT AAAAAAAA GCAAAAATCA chr2L:5247956-5248076 111 1.42e-04 GTCAAGGGCC Aaaaaaaa ga chr2L:94233-94353 45 1.42e-04 TGTTAATCTA AAAAAAAA CTCGCCAAAC chr3R:25548324-25548444 38 1.42e-04 CCGAACAGAA AAAAAAAA CGCAGAAAAT chr2R:22655493-22655613 59 1.42e-04 GTAACTTATT AAAAAAAA TTTGACAACA chr2L:21676912-21677032 19 2.01e-04 AACCATTTGC AACAGCAA CTGAGCTTGC chr2R:6946549-6946669 57 2.30e-04 TGCTGCCATA AATAAAAA CTTATTAGGT chr3L:9815864-9815984 88 2.30e-04 tgaaaataca aataaaaa tgaaaatgaa chr2R:21549008-21549128 72 3.16e-04 TCGGCGGGCA AACAGAAA AGTAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9944624-9944744 2.1e-05 9_[+5]_103 chr2R:15802144-15802264 2.1e-05 85_[+5]_27 chr3L:16429580-16429700 2.1e-05 89_[+5]_23 chrX:22963584-22963704 2.1e-05 50_[+5]_62 chr2R:16095654-16095774 2.1e-05 43_[+5]_69 chr2R:17793754-17793874 2.1e-05 92_[+5]_20 chrX:9121443-9121563 2.1e-05 96_[+5]_16 chr2R:17310862-17310982 2.1e-05 75_[+5]_37 chr3R:22172562-22172682 2.1e-05 30_[+5]_82 chr3L:7837930-7838050 2.1e-05 92_[+5]_20 chr2R:17435609-17435729 4.6e-05 108_[+5]_4 chrX:9122661-9122781 4.6e-05 32_[+5]_80 chr2R:13245281-13245401 4.6e-05 7_[+5]_105 chr3R:24026674-24026794 4.6e-05 13_[+5]_99 chr3L:22175707-22175827 7e-05 84_[+5]_28 chr2R:9941716-9941836 7e-05 33_[+5]_79 chr3L:17808931-17809051 8.8e-05 31_[+5]_81 chr3L:7996499-7996619 8.8e-05 32_[+5]_80 chr2R:6746202-6746322 8.8e-05 15_[+5]_97 chrX:13645180-13645300 8.8e-05 50_[+5]_62 chr3R:10265275-10265395 8.8e-05 23_[+5]_89 chr2L:14499656-14499776 8.8e-05 1_[+5]_111 chr3L:19940223-19940343 8.8e-05 13_[+5]_99 chrX:772784-772904 0.00011 45_[+5]_67 chr3R:15463511-15463631 0.00011 91_[+5]_21 chr3R:21598199-21598319 0.00011 45_[+5]_67 chr3L:16657182-16657302 0.00014 87_[+5]_25 chr2L:5247956-5248076 0.00014 110_[+5]_2 chr2L:94233-94353 0.00014 44_[+5]_68 chr3R:25548324-25548444 0.00014 37_[+5]_75 chr2R:22655493-22655613 0.00014 58_[+5]_54 chr2L:21676912-21677032 0.0002 18_[+5]_94 chr2R:6946549-6946669 0.00023 56_[+5]_56 chr3L:9815864-9815984 0.00023 87_[+5]_25 chr2R:21549008-21549128 0.00032 71_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAACAA width=8 seqs=35 chr3R:9944624-9944744 ( 10) AACAACAA 1 chr2R:15802144-15802264 ( 86) AACAACAA 1 chr3L:16429580-16429700 ( 90) AACAACAA 1 chrX:22963584-22963704 ( 51) AACAACAA 1 chr2R:16095654-16095774 ( 44) AACAACAA 1 chr2R:17793754-17793874 ( 93) AACAACAA 1 chrX:9121443-9121563 ( 97) AACAACAA 1 chr2R:17310862-17310982 ( 76) AACAACAA 1 chr3R:22172562-22172682 ( 31) AACAACAA 1 chr3L:7837930-7838050 ( 93) AACAACAA 1 chr2R:17435609-17435729 ( 109) AAAAACAA 1 chrX:9122661-9122781 ( 33) AAAAACAA 1 chr2R:13245281-13245401 ( 8) AAAAACAA 1 chr3R:24026674-24026794 ( 14) AAAAACAA 1 chr3L:22175707-22175827 ( 85) AACAAAAA 1 chr2R:9941716-9941836 ( 34) AACAAAAA 1 chr3L:17808931-17809051 ( 32) AGCAACAA 1 chr3L:7996499-7996619 ( 33) AGCAACAA 1 chr2R:6746202-6746322 ( 16) AGCAACAA 1 chrX:13645180-13645300 ( 51) AGCAACAA 1 chr3R:10265275-10265395 ( 24) AGCAACAA 1 chr2L:14499656-14499776 ( 2) AGCAACAA 1 chr3L:19940223-19940343 ( 14) AGCAACAA 1 chrX:772784-772904 ( 46) AATAACAA 1 chr3R:15463511-15463631 ( 92) AATAACAA 1 chr3R:21598199-21598319 ( 46) AATAACAA 1 chr3L:16657182-16657302 ( 88) AAAAAAAA 1 chr2L:5247956-5248076 ( 111) AAAAAAAA 1 chr2L:94233-94353 ( 45) AAAAAAAA 1 chr3R:25548324-25548444 ( 38) AAAAAAAA 1 chr2R:22655493-22655613 ( 59) AAAAAAAA 1 chr2L:21676912-21677032 ( 19) AACAGCAA 1 chr2R:6946549-6946669 ( 57) AATAAAAA 1 chr3L:9815864-9815984 ( 88) AATAAAAA 1 chr2R:21549008-21549128 ( 72) AACAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 1.4e+003 188 -1177 -1177 -1177 156 -1177 -18 -1177 -8 139 -1177 -93 188 -1177 -1177 -1177 180 -1177 -199 -1177 8 164 -1177 -1177 188 -1177 -1177 -1177 188 -1177 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.4e+003 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.257143 0.600000 0.000000 0.142857 1.000000 0.000000 0.000000 0.000000 0.942857 0.000000 0.057143 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAA MEME-5 regular expression -------------------------------------------------------------------------------- A[AG][CA]AA[CA]AA -------------------------------------------------------------------------------- Time 31.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30767680-30767800 6.73e-03 65_[+1(1.05e-05)]_47 chr3L:2136558-2136678 5.21e-03 36_[+1(3.54e-05)]_76 chr3R:22171696-22171816 2.26e-02 26_[+3(7.66e-05)]_86 chr3R:6828411-6828531 2.94e-01 120 chr2L:14476816-14476936 7.56e-03 60_[+1(2.29e-05)]_52 chr2L:5150050-5150170 3.81e-03 56_[+1(2.29e-05)]_56 chr3R:30921718-30921838 7.58e-02 120 chr2R:19331386-19331506 1.11e-01 120 chr3L:786963-787083 3.25e-02 68_[+1(1.05e-05)]_44 chr2L:14377844-14377964 2.21e-02 75_[+1(5.02e-05)]_37 chr3R:15465538-15465658 9.18e-03 56_[+1(2.29e-05)]_56 chr3L:643471-643591 4.20e-02 32_[+1(1.05e-05)]_80 chr3R:30541624-30541744 2.24e-04 20_[+3(9.11e-06)]_2_[+3(2.00e-05)]_\ 4_[+1(2.29e-05)]_13_[+3(8.57e-05)]_49 chr3R:9483896-9484016 1.24e-02 120 chr3R:30779769-30779889 6.46e-03 34_[+2(8.06e-05)]_78 chr2R:7696125-7696245 3.67e-02 83_[+1(1.05e-05)]_29 chr3L:7837930-7838050 6.43e-04 55_[+1(1.05e-05)]_29_[+5(2.10e-05)]_\ 20 chr3L:19940223-19940343 1.23e-03 13_[+5(8.79e-05)]_19_[+1(1.05e-05)]_\ 72 chr3L:9113729-9113849 4.19e-01 120 chr2L:21887730-21887850 2.84e-03 109_[+1(1.05e-05)]_3 chr2R:9941716-9941836 1.04e-03 33_[+5(7.03e-05)]_44_[+4(1.30e-05)]_\ 27 chr3L:22390448-22390568 5.55e-03 56_[+1(3.54e-05)]_56 chr2R:24273827-24273947 2.06e-01 63_[+1(2.29e-05)]_49 chr2R:16802445-16802565 2.52e-01 120 chr3L:20441041-20441161 2.12e-01 120 chr3R:10275303-10275423 1.16e-02 69_[+1(1.05e-05)]_43 chr3L:3934286-3934406 1.01e-01 67_[+1(2.29e-05)]_45 chrX:5357130-5357250 2.50e-01 120 chr3L:21380251-21380371 2.29e-03 19_[+1(1.05e-05)]_22_[+3(2.00e-05)]_\ 34_[+3(7.66e-05)]_11_[+3(2.00e-05)]_2 chr3L:15073854-15073974 1.35e-01 120 chr2L:14376571-14376691 8.37e-02 36_[+3(9.11e-06)]_76 chr2L:17571655-17571775 4.19e-02 75_[+1(3.54e-05)]_37 chrX:13817979-13818099 3.21e-02 32_[+1(3.54e-05)]_80 chr2R:18325842-18325962 2.58e-03 46_[+1(5.02e-05)]_13_[+3(7.66e-05)]_\ 7_[+3(7.66e-05)]_30 chr3R:24026674-24026794 1.60e-02 13_[+5(4.56e-05)]_99 chr2L:9679879-9679999 1.70e-02 104_[+2(8.06e-05)]_8 chr3L:2728108-2728228 6.28e-01 120 chr3L:13479329-13479449 5.13e-02 103_[+1(5.02e-05)]_9 chr3L:2745091-2745211 1.09e-03 109_[+4(1.30e-05)]_3 chr3R:22172562-22172682 2.41e-03 6_[+1(1.05e-05)]_16_[+5(2.10e-05)]_\ 55_[+5(4.56e-05)]_19 chr2R:9938100-9938220 3.21e-01 120 chr2R:21201802-21201922 1.86e-02 84_[+1(1.05e-05)]_28 chr3R:13978067-13978187 1.20e-04 30_[+1(2.29e-05)]_35_[+3(9.11e-06)]_\ 39 chr2R:22655493-22655613 1.96e-03 73_[+1(3.54e-05)]_39 chr3R:25548324-25548444 2.39e-02 70_[+1(3.54e-05)]_42 chr3L:22989644-22989764 1.25e-01 120 chr2L:7711152-7711272 1.57e-01 67_[+3(7.66e-05)]_45 chr2R:17107777-17107897 4.73e-02 57_[+1(2.29e-05)]_55 chr2L:14419917-14420037 4.16e-01 120 chr2L:10498181-10498301 4.60e-02 120 chr2R:24279754-24279874 2.01e-02 54_[+1(6.06e-05)]_58 chr2R:20036120-20036240 9.48e-02 55_[+1(5.02e-05)]_57 chr2R:13245281-13245401 1.34e-01 7_[+5(4.56e-05)]_105 chr3L:3400821-3400941 4.22e-01 120 chr2R:12595725-12595845 5.47e-04 82_[+1(3.54e-05)]_30 chr3R:14599247-14599367 2.42e-01 120 chr2R:17478082-17478202 3.23e-03 55_[+1(2.29e-05)]_57 chr2R:21641896-21642016 1.53e-03 6_[+1(6.06e-05)]_15_[+3(2.00e-05)]_\ 1_[+1(3.54e-05)]_74 chr2L:14558997-14559117 1.69e-01 34_[+2(8.06e-05)]_78 chr2R:21853406-21853526 1.12e-03 11_[+1(2.29e-05)]_43_[+3(9.11e-06)]_\ 50 chr2R:17310862-17310982 5.81e-03 64_[+1(3.54e-05)]_3_[+5(2.10e-05)]_\ 37 chr3L:1393581-1393701 2.85e-01 120 chr2L:94233-94353 2.31e-02 67_[+1(2.29e-05)]_45 chr3R:20168132-20168252 1.71e-02 88_[+1(2.29e-05)]_24 chr3R:20167227-20167347 1.49e-01 120 chrX:9636944-9637064 4.25e-04 41_[+1(5.02e-05)]_71 chr3R:27425594-27425714 1.06e-01 69_[+1(7.29e-05)]_43 chr3L:109234-109354 4.09e-02 54_[+1(2.29e-05)]_58 chr3L:536451-536571 1.87e-03 23_[+1(7.29e-05)]_67_[+3(4.43e-05)]_\ 14 chr3L:41535-41655 3.32e-01 88_[+2(5.57e-05)]_24 chr3R:20604188-20604308 4.62e-01 120 chr3L:9815864-9815984 3.48e-01 120 chr2R:23627514-23627634 1.94e-01 120 chr3R:16556971-16557091 5.50e-02 44_[+1(2.29e-05)]_68 chr2R:16802649-16802769 9.50e-01 120 chrX:9121443-9121563 9.76e-02 96_[+5(2.10e-05)]_1_[+5(8.79e-05)]_\ 7 chr2L:14499656-14499776 4.63e-03 1_[+5(8.79e-05)]_47_[+1(1.05e-05)]_\ 56 chrX:2457376-2457496 4.26e-02 45_[+3(2.00e-05)]_67 chr2L:5247956-5248076 6.10e-02 120 chr3L:6704408-6704528 2.36e-02 16_[+1(3.54e-05)]_96 chr3L:15101667-15101787 2.12e-02 73_[+1(2.29e-05)]_39 chr2R:6946549-6946669 4.33e-02 35_[+1(3.54e-05)]_77 chr2L:14506847-14506967 7.21e-02 32_[+1(1.05e-05)]_80 chr2L:7572002-7572122 2.54e-02 94_[+1(5.02e-05)]_18 chr3R:16218649-16218769 3.42e-01 120 chr2L:20478658-20478778 7.07e-02 120 chr3L:21379484-21379604 4.33e-03 15_[+1(6.06e-05)]_97 chr2R:17793754-17793874 6.76e-03 92_[+5(2.10e-05)]_20 chrX:9122661-9122781 3.38e-02 23_[+5(4.56e-05)]_1_[+5(4.56e-05)]_\ 80 chr3L:10659650-10659770 8.32e-03 57_[+1(2.29e-05)]_55 chr3R:13013983-13014103 8.54e-04 25_[+2(5.57e-05)]_[+3(3.66e-05)]_79 chr2R:9266425-9266545 1.61e-01 25_[+1(3.54e-05)]_87 chr3R:13776994-13777114 7.51e-02 120 chr3R:30111189-30111309 3.87e-01 120 chr3R:10679846-10679966 5.24e-02 120 chrX:4936679-4936799 1.83e-03 46_[+2(2.09e-05)]_38_[+1(2.29e-05)]_\ 20 chr3R:23967542-23967662 5.93e-02 120 chr2R:9938302-9938422 1.89e-02 52_[+1(1.05e-05)]_60 chrX:17716996-17717116 6.71e-01 120 chrX:18116911-18117031 4.21e-02 27_[+3(9.11e-06)]_85 chrX:6033745-6033865 4.62e-01 120 chr3R:26552365-26552485 5.48e-03 95_[+2(5.57e-05)]_17 chr2R:23740440-23740560 8.21e-04 14_[+2(5.57e-05)]_79_[+3(3.66e-05)]_\ 11 chr3R:10266980-10267100 1.35e-02 53_[+1(3.54e-05)]_59 chr3L:16057640-16057760 1.20e-01 62_[+1(5.02e-05)]_50 chr2R:12744757-12744877 1.16e-01 35_[+1(3.54e-05)]_77 chr3L:19908411-19908531 1.05e-01 81_[+1(3.54e-05)]_31 chr2L:5116688-5116808 1.27e-01 72_[+1(3.54e-05)]_40 chr2R:8755757-8755877 1.84e-03 78_[+1(1.05e-05)]_34 chr3R:29476428-29476548 1.39e-01 57_[+1(2.29e-05)]_55 chr3L:3523885-3524005 1.34e-02 120 chr3R:10265275-10265395 4.77e-03 23_[+5(8.79e-05)]_68_[+1(1.05e-05)]_\ 13 chrX:1985729-1985849 3.61e-01 120 chr3R:30541824-30541944 4.93e-01 120 chr3L:9690976-9691096 8.91e-04 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8.65e-03 71_[+1(3.54e-05)]_41 chrX:22963584-22963704 2.14e-03 5_[+1(1.05e-05)]_10_[+5(7.03e-05)]_\ 19_[+5(2.10e-05)]_5_[+1(3.54e-05)]_49 chr3R:21158785-21158905 2.92e-01 120 chrX:13645180-13645300 1.45e-01 50_[+5(8.79e-05)]_62 chrX:13304312-13304432 7.57e-04 60_[+3(2.76e-05)]_7_[+1(3.54e-05)]_\ 37 chr2L:7528230-7528350 3.16e-01 120 chr2R:17087604-17087724 2.49e-01 120 chr2R:25076901-25077021 8.29e-01 120 chr3R:6414511-6414631 5.49e-04 8_[+4(1.30e-05)]_24_[+1(6.06e-05)]_\ 72 chr3L:15178999-15179119 1.40e-03 31_[+3(2.00e-05)]_10_[+1(2.29e-05)]_\ 63 chr2R:8336211-8336331 2.38e-02 86_[+1(1.05e-05)]_26 chrX:18014663-18014783 7.72e-02 120 chr3R:17783296-17783416 9.79e-02 38_[+1(1.05e-05)]_74 chr3L:16429580-16429700 2.40e-03 51_[+2(2.09e-05)]_30_[+5(2.10e-05)]_\ 23 chr2L:3719631-3719751 9.01e-01 120 chr3L:1859681-1859801 4.24e-01 120 chr4:210439-210559 5.88e-01 120 chr2R:6746202-6746322 1.18e-01 15_[+5(8.79e-05)]_97 chr3R:11451351-11451471 2.50e-01 120 chr2L:12509603-12509723 5.61e-01 120 chr2R:15249617-15249737 9.74e-01 120 chr3R:5701192-5701312 4.29e-01 120 chr3L:16657182-16657302 1.79e-01 120 chr3L:22402858-22402978 7.20e-03 44_[+1(7.29e-05)]_68 chr2L:14374182-14374302 8.26e-01 120 chr3R:21660648-21660768 2.34e-02 48_[+2(5.57e-05)]_34_[+2(2.09e-05)]_\ 22 chr2R:7896334-7896454 8.05e-01 120 chr3R:25448867-25448987 7.27e-01 120 chr2L:2906235-2906355 5.35e-02 33_[+4(1.30e-05)]_79 chr3L:14549372-14549492 4.17e-01 120 chr2L:21756924-21757044 7.16e-01 120 chr2L:10499536-10499656 7.99e-01 120 chr3L:7996499-7996619 1.58e-03 32_[+5(8.79e-05)]_80 chr3L:2469794-2469914 6.51e-02 53_[+1(5.02e-05)]_59 chr2L:3114257-3114377 3.45e-02 11_[+2(2.09e-05)]_101 chr2R:19125909-19126029 3.87e-01 120 chr2R:11706374-11706494 8.15e-01 120 chr3L:16889718-16889838 1.44e-02 15_[+3(2.00e-05)]_97 chr3L:3760525-3760645 6.76e-01 120 chr2R:15802144-15802264 8.68e-04 2_[+3(7.66e-05)]_9_[+3(9.11e-06)]_8_\ [+5(4.56e-05)]_42_[+5(2.10e-05)]_27 chr3R:19467588-19467708 1.89e-01 120 chr3L:20901154-20901274 5.32e-04 42_[+3(2.76e-05)]_70 chr2L:14307667-14307787 1.34e-01 44_[+2(8.06e-05)]_14_[+2(2.09e-05)]_\ 46 chr2L:20886147-20886267 1.26e-02 19_[+2(8.06e-05)]_30_[+1(5.02e-05)]_\ 55 chr2L:7789122-7789242 6.78e-01 120 chrX:6638312-6638432 5.64e-03 120 chr2L:20066717-20066837 7.19e-01 120 chr2R:6870188-6870308 8.55e-02 120 chr2L:14513382-14513502 1.33e-01 82_[+1(2.29e-05)]_30 chr3R:21271285-21271405 6.14e-02 6_[+2(5.57e-05)]_106 chr3L:16494909-16495029 1.30e-02 [+3(7.66e-05)]_112 chr3L:16431168-16431288 2.19e-02 66_[+2(8.06e-05)]_[+2(2.09e-05)]_\ [+2(2.09e-05)]_14_[+2(2.09e-05)]_8 chr3R:14415723-14415843 3.62e-01 120 chr2L:14699629-14699749 9.60e-01 120 chr3L:8683904-8684024 8.92e-01 120 chr4:558727-558847 3.04e-02 112_[+2(8.06e-05)] chr3L:17808931-17809051 1.08e-02 31_[+5(8.79e-05)]_81 chr3L:3411170-3411290 7.86e-02 120 chr3L:22401663-22401783 1.81e-01 39_[+1(3.54e-05)]_73 chr2R:21549008-21549128 1.90e-01 120 chr3L:12045571-12045691 3.71e-01 120 chr3L:11384127-11384247 1.22e-01 120 chrX:8294490-8294610 8.87e-01 120 chrX:8295071-8295191 9.21e-01 120 chr3R:9770316-9770436 3.76e-01 120 chr3L:17008752-17008872 5.47e-02 120 chr3L:6612792-6612912 9.27e-02 120 chrX:2973719-2973839 3.21e-01 120 chr2R:16848443-16848563 2.08e-01 120 chrX:9581874-9581994 5.69e-01 120 chr2R:10212378-10212498 4.03e-01 120 chr3R:16349244-16349364 7.34e-02 8_[+1(7.29e-05)]_104 chr2R:21611354-21611474 9.13e-01 120 chr3R:9944624-9944744 2.42e-03 9_[+5(2.10e-05)]_103 chr3L:11345672-11345792 2.15e-01 80_[+2(8.06e-05)]_32 chr3R:10093748-10093868 4.18e-02 4_[+1(7.29e-05)]_108 chrX:9139258-9139378 1.01e-02 70_[+1(6.06e-05)]_42 chr3L:22838173-22838293 4.80e-01 120 chr3R:11993438-11993558 3.94e-01 120 chr2L:5338786-5338906 6.70e-01 120 chr3L:8029308-8029428 1.42e-02 46_[+1(2.29e-05)]_66 chr2L:1738274-1738394 1.13e-02 70_[+1(5.02e-05)]_3_[+1(1.05e-05)]_\ 31 chr3L:15597149-15597269 3.43e-01 120 chr3L:15824102-15824222 6.21e-01 120 chr2R:16869413-16869533 2.51e-01 120 chr2L:14537000-14537120 2.08e-01 120 chrX:772784-772904 4.31e-01 120 chr3L:10741291-10741411 9.66e-01 120 chrX:3695783-3695903 5.05e-01 120 chr3R:19621124-19621244 9.90e-03 54_[+1(5.02e-05)]_58 chr2L:4227770-4227890 2.15e-01 120 chr2R:15531562-15531682 2.61e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************