******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/modmdg4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:27082887-27083007 1.0000 120 chr2L:7063186-7063306 1.0000 120 chr3R:12363672-12363792 1.0000 120 chr2L:11012163-11012283 1.0000 120 chr2R:6089093-6089213 1.0000 120 chr2R:9183213-9183333 1.0000 120 chrX:17284859-17284979 1.0000 120 chr3R:16310409-16310529 1.0000 120 chr2R:19699773-19699893 1.0000 120 chr3R:19929150-19929270 1.0000 120 chr2R:12883198-12883318 1.0000 120 chr3L:11104493-11104613 1.0000 120 chr3L:22733819-22733939 1.0000 120 chrX:9889852-9889972 1.0000 120 chr2R:13580599-13580719 1.0000 120 chr2L:7693599-7693719 1.0000 120 chr3R:6239090-6239210 1.0000 120 chr3L:1199448-1199568 1.0000 120 chrX:12757196-12757316 1.0000 120 chr2L:138264-138384 1.0000 120 chr2L:19622-19742 1.0000 120 chrX:10841032-10841152 1.0000 120 chrX:4700587-4700707 1.0000 120 chr2L:14197369-14197489 1.0000 120 chr3L:4426740-4426860 1.0000 120 chr3R:17403790-17403910 1.0000 120 chr3L:1191691-1191811 1.0000 120 chr2L:8974625-8974745 1.0000 120 chr2R:17114891-17115011 1.0000 120 chr3L:3315423-3315543 1.0000 120 chr3R:28302272-28302392 1.0000 120 chr2R:23421236-23421356 1.0000 120 chrX:11555085-11555205 1.0000 120 chr2R:12409731-12409851 1.0000 120 chr3R:22531973-22532093 1.0000 120 chr3R:18390175-18390295 1.0000 120 chr2L:4903958-4904078 1.0000 120 chr3R:8127882-8128002 1.0000 120 chr3R:22072695-22072815 1.0000 120 chr4:490266-490386 1.0000 120 chr3R:6124458-6124578 1.0000 120 chr3R:6388691-6388811 1.0000 120 chr2R:14534892-14535012 1.0000 120 chr2L:5804168-5804288 1.0000 120 chr3L:20183854-20183974 1.0000 120 chr2L:18513508-18513628 1.0000 120 chr2L:9776059-9776179 1.0000 120 chr2R:25189573-25189693 1.0000 120 chrX:2679547-2679667 1.0000 120 chr3L:5537856-5537976 1.0000 120 chr2L:3633995-3634115 1.0000 120 chr3L:19008967-19009087 1.0000 120 chr3R:20286958-20287078 1.0000 120 chrX:10489896-10490016 1.0000 120 chr2L:5270332-5270452 1.0000 120 chr3R:6210283-6210403 1.0000 120 chrX:21061761-21061881 1.0000 120 chrX:22443233-22443353 1.0000 120 chr2R:5986933-5987053 1.0000 120 chrX:18772148-18772268 1.0000 120 chrX:9874146-9874266 1.0000 120 chr3L:15809964-15810084 1.0000 120 chr3R:12652875-12652995 1.0000 120 chr3L:18957142-18957262 1.0000 120 chrX:265815-265935 1.0000 120 chr2L:20341327-20341447 1.0000 120 chr3R:30898712-30898832 1.0000 120 chr3L:21262597-21262717 1.0000 120 chr3R:10120188-10120308 1.0000 120 chr2R:13536943-13537063 1.0000 120 chr3L:8071809-8071929 1.0000 120 chr3R:20305979-20306099 1.0000 120 chr3L:13900764-13900884 1.0000 120 chr3L:17407242-17407362 1.0000 120 chrX:12478521-12478641 1.0000 120 chr3L:7815829-7815949 1.0000 120 chrX:1169576-1169696 1.0000 120 chr3R:30486114-30486234 1.0000 120 chr3L:15808783-15808903 1.0000 120 chrX:2645660-2645780 1.0000 120 chr2R:23753401-23753521 1.0000 120 chr3L:21930387-21930507 1.0000 120 chr2L:14184342-14184462 1.0000 120 chr2R:13132512-13132632 1.0000 120 chr3L:3457040-3457160 1.0000 120 chr3R:6458996-6459116 1.0000 120 chr3L:1831877-1831997 1.0000 120 chr3L:1850656-1850776 1.0000 120 chr2L:15613675-15613795 1.0000 120 chr3L:10644799-10644919 1.0000 120 chr2R:24976159-24976279 1.0000 120 chr3R:16620006-16620126 1.0000 120 chr2R:7317703-7317823 1.0000 120 chr2L:19458784-19458904 1.0000 120 chr2R:25038564-25038684 1.0000 120 chr3L:10678016-10678136 1.0000 120 chr2R:22287368-22287488 1.0000 120 chr2R:15291778-15291898 1.0000 120 chr2L:10671680-10671800 1.0000 120 chr2L:14619046-14619166 1.0000 120 chr3R:17109023-17109143 1.0000 120 chr3R:26985478-26985598 1.0000 120 chr2L:11475105-11475225 1.0000 120 chr3R:11452185-11452305 1.0000 120 chr2R:24299630-24299750 1.0000 120 chr3L:19646442-19646562 1.0000 120 chr3R:19220145-19220265 1.0000 120 chr2R:18553847-18553967 1.0000 120 chr3R:16611404-16611524 1.0000 120 chrX:3177462-3177582 1.0000 120 chr2R:17493085-17493205 1.0000 120 chr3R:25721165-25721285 1.0000 120 chr2R:18807763-18807883 1.0000 120 chr3L:9203146-9203266 1.0000 120 chr3L:1323895-1324015 1.0000 120 chr3R:28668970-28669090 1.0000 120 chr3L:3076697-3076817 1.0000 120 chr3L:16782931-16783051 1.0000 120 chrX:19235967-19236087 1.0000 120 chr3R:24054275-24054395 1.0000 120 chr3L:4115889-4116009 1.0000 120 chr3L:15516550-15516670 1.0000 120 chr3R:6286619-6286739 1.0000 120 chr3R:4969766-4969886 1.0000 120 chr3R:22779949-22780069 1.0000 120 chr2L:21626513-21626633 1.0000 120 chrX:11434105-11434225 1.0000 120 chr3L:3316552-3316672 1.0000 120 chr2L:16655-16775 1.0000 120 chr3L:968301-968421 1.0000 120 chr3R:30844930-30845050 1.0000 120 chrX:19157602-19157722 1.0000 120 chr3R:27057959-27058079 1.0000 120 chr3L:21359948-21360068 1.0000 120 chr3R:15688543-15688663 1.0000 120 chr2R:24757133-24757253 1.0000 120 chrX:5766882-5767002 1.0000 120 chr3L:13860104-13860224 1.0000 120 chr2L:6717143-6717263 1.0000 120 chr3L:9064323-9064443 1.0000 120 chr2R:8435075-8435195 1.0000 120 chr3R:10437132-10437252 1.0000 120 chr3L:28091273-28091393 1.0000 120 chr2R:14427099-14427219 1.0000 120 chrX:1063170-1063290 1.0000 120 chr3R:16068351-16068471 1.0000 120 chr2R:21352716-21352836 1.0000 120 chr4:415587-415707 1.0000 120 chr3L:3766821-3766941 1.0000 120 chr3L:4219424-4219544 1.0000 120 chr2L:20869032-20869152 1.0000 120 chr3R:27071904-27072024 1.0000 120 chr3R:5846845-5846965 1.0000 120 chr2L:21087802-21087922 1.0000 120 chr3R:19638815-19638935 1.0000 120 chrX:16889127-16889247 1.0000 120 chr2L:3889932-3890052 1.0000 120 chr2R:20230897-20231017 1.0000 120 chr3R:26956096-26956216 1.0000 120 chr3L:12008086-12008206 1.0000 120 chrX:1963239-1963359 1.0000 120 chr3R:31677987-31678107 1.0000 120 chr2L:15916064-15916184 1.0000 120 chr3L:16741766-16741886 1.0000 120 chr3R:6149777-6149897 1.0000 120 chr2R:23671835-23671955 1.0000 120 chr3L:1913620-1913740 1.0000 120 chr3L:16291835-16291955 1.0000 120 chr3R:7886401-7886521 1.0000 120 chr2L:3131831-3131951 1.0000 120 chr3L:17898706-17898826 1.0000 120 chrX:9643560-9643680 1.0000 120 chr3L:11135870-11135990 1.0000 120 chr3L:17891536-17891656 1.0000 120 chrX:13134942-13135062 1.0000 120 chr2L:21085757-21085877 1.0000 120 chr3R:21346784-21346904 1.0000 120 chrX:19310279-19310399 1.0000 120 chr3L:17549337-17549457 1.0000 120 chr2R:10417277-10417397 1.0000 120 chr2L:1049521-1049641 1.0000 120 chr3R:11665672-11665792 1.0000 120 chr3L:4464766-4464886 1.0000 120 chr2R:9056123-9056243 1.0000 120 chr3L:2485910-2486030 1.0000 120 chr2R:12565110-12565230 1.0000 120 chrX:149852-149972 1.0000 120 chr2L:19399446-19399566 1.0000 120 chr3L:3267362-3267482 1.0000 120 chr3L:6129778-6129898 1.0000 120 chr2R:10857706-10857826 1.0000 120 chr3R:12383911-12384031 1.0000 120 chr2L:8973115-8973235 1.0000 120 chr3R:24015665-24015785 1.0000 120 chr3R:27056312-27056432 1.0000 120 chr3L:7143408-7143528 1.0000 120 chr2R:8137724-8137844 1.0000 120 chrX:4214517-4214637 1.0000 120 chr3L:18949261-18949381 1.0000 120 chrX:8838095-8838215 1.0000 120 chr3L:1839558-1839678 1.0000 120 chr3R:16984324-16984444 1.0000 120 chr2R:23044708-23044828 1.0000 120 chr3L:16913396-16913516 1.0000 120 chrX:6659997-6660117 1.0000 120 chrX:2214209-2214329 1.0000 120 chr3L:20910389-20910509 1.0000 120 chr3R:25512889-25513009 1.0000 120 chrX:19170966-19171086 1.0000 120 chr3R:19915773-19915893 1.0000 120 chr2L:2800638-2800758 1.0000 120 chrX:1315517-1315637 1.0000 120 chr3R:6190614-6190734 1.0000 120 chr2R:11264014-11264134 1.0000 120 chr3R:30248766-30248886 1.0000 120 chr3L:1883457-1883577 1.0000 120 chr2R:17493296-17493416 1.0000 120 chr3L:19569150-19569270 1.0000 120 chrX:1523441-1523561 1.0000 120 chr2L:303936-304056 1.0000 120 chr2L:16859787-16859907 1.0000 120 chr3R:5268631-5268751 1.0000 120 chrX:19640765-19640885 1.0000 120 chr3L:22456056-22456176 1.0000 120 chr3R:6206471-6206591 1.0000 120 chr2R:14766418-14766538 1.0000 120 chr2L:18576390-18576510 1.0000 120 chr2L:3294757-3294877 1.0000 120 chr3L:8329150-8329270 1.0000 120 chr3L:5356722-5356842 1.0000 120 chr3R:4712219-4712339 1.0000 120 chr3L:12735846-12735966 1.0000 120 chr3R:14823092-14823212 1.0000 120 chr2R:19776500-19776620 1.0000 120 chr2R:21199554-21199674 1.0000 120 chrX:18520537-18520657 1.0000 120 chr3L:7756964-7757084 1.0000 120 chr3L:8787370-8787490 1.0000 120 chr3R:18394415-18394535 1.0000 120 chrX:11430244-11430364 1.0000 120 chr3R:6683804-6683924 1.0000 120 chr2L:4812390-4812510 1.0000 120 chr3L:3931065-3931185 1.0000 120 chr2R:16670193-16670313 1.0000 120 chr2R:11688627-11688747 1.0000 120 chr3R:7485083-7485203 1.0000 120 chr2R:7759816-7759936 1.0000 120 chr2L:3762840-3762960 1.0000 120 chr2L:16858-16978 1.0000 120 chr2L:19378736-19378856 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_modmdg4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/modmdg4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.181 G 0.179 T 0.323 Background letter frequencies (from file dataset with add-one prior applied): A 0.318 C 0.181 G 0.179 T 0.323 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCATACTT MEME-1 width = 8 sites = 99 llr = 905 E-value = 2.9e-097 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :19:a1:: pos.-specific C :91::9:1 probability G a::::::: matrix T :::a::a9 bits 2.5 * 2.2 * 2.0 * 1.7 ** ** Relative 1.5 ** ***** Entropy 1.2 ******** (13.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCATACTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7485083-7485203 5 2.00e-05 TGTT GCATACTT TCCTGCGGTG chr2L:4812390-4812510 37 2.00e-05 GTAGATTGTT GCATACTT TTCGGTGTTG chr3R:6683804-6683924 69 2.00e-05 AAATATTCTT GCATACTT TTGGGCTGAC chr3L:8787370-8787490 86 2.00e-05 ATCTGCCGCT GCATACTT TTGAGAGTTA chr2R:19776500-19776620 84 2.00e-05 CTTTTGTATT GCATACTT TTGGGCGCCG chr2L:3294757-3294877 58 2.00e-05 GCAATTCGTG GCATACTT CTGCGATCTG chrX:19640765-19640885 75 2.00e-05 TCTTTTCGCT GCATACTT TTGGGCTACT chr3L:19569150-19569270 51 2.00e-05 AAGACTCATA GCATACTT TTTGATGTAA chr3L:1883457-1883577 107 2.00e-05 ATATTTCAAA GCATACTT TTTGGA chrX:1315517-1315637 48 2.00e-05 CTTTTTCCCT GCATACTT GTGGGGGAGC chr3R:25512889-25513009 28 2.00e-05 GAAAAAAGTT GCATACTT TGGGGCTGTT chrX:2214209-2214329 36 2.00e-05 AACAATCATA GCATACTT TCAGGCGCAG chr3L:16913396-16913516 40 2.00e-05 GAAAATCATG GCATACTT GCGGGCGGAG chr2R:23044708-23044828 19 2.00e-05 ATATTTCAAT GCATACTT TCAGGCGCGC chr2L:8973115-8973235 63 2.00e-05 CTCCTCAATA GCATACTT GTATATACCT chr2R:10857706-10857826 63 2.00e-05 CTTTTTCACT GCATACTT TTGGGCAGCC chr2R:12565110-12565230 45 2.00e-05 TGAAATTGCT GCATACTT TTGGGCTTAT chr3L:2485910-2486030 84 2.00e-05 AAGAATTATT GCATACTT TCAGGGTGAC chr3L:4464766-4464886 58 2.00e-05 AGAAAACGAA GCATACTT CTCGGGCTAA chr2L:1049521-1049641 66 2.00e-05 AAAAAGGGTT GCATACTT CTCGGCTGCA chr2R:10417277-10417397 14 2.00e-05 GTCTGCTGGG GCATACTT TCAGGCGAAA chr2L:3131831-3131951 71 2.00e-05 CATTTTTGTA GCATACTT TAATGCGCTG chr3L:1913620-1913740 97 2.00e-05 ATACAGCTCT GCATACTT TTAGGAAGAT chr2R:23671835-23671955 68 2.00e-05 CGGAAACGTA GCATACTT TTCAGGGAAT chr3R:6149777-6149897 99 2.00e-05 ATTAGGCTTT GCATACTT TGCGGTTCAA chrX:1963239-1963359 53 2.00e-05 TTTGTGCATT GCATACTT TTAGACGGCT chr3R:27071904-27072024 33 2.00e-05 AAATCTACTT GCATACTT TAGGGATCTA chr3L:3766821-3766941 63 2.00e-05 AAATTGTGTT GCATACTT GGCGGCTGCA chr4:415587-415707 80 2.00e-05 CATTTTTGGT GCATACTT TTCGGCGACT chr2R:14427099-14427219 23 2.00e-05 AAAAATTAGA GCATACTT TTTGGCGCCG chrX:5766882-5767002 89 2.00e-05 TGAAATGATA GCATACTT CTGGGCAGAT chr3R:15688543-15688663 49 2.00e-05 AATACGTACA GCATACTT TTCGGCGCTG chr3L:21359948-21360068 29 2.00e-05 TCAAGCAATT GCATACTT CTAGGCTTTG chrX:19157602-19157722 47 2.00e-05 TGATAAACTT GCATACTT TTGGGCATTC chr3R:4969766-4969886 81 2.00e-05 CATTTCGCGA GCATACTT TTCGGATATT chr3L:15516550-15516670 23 2.00e-05 TCAAAACTTA GCATACTT AGGTGAGCTT chr2R:18807763-18807883 74 2.00e-05 TACTTTTAAA GCATACTT TTTGGGGCGT chr2L:11475105-11475225 106 2.00e-05 GATTTGTATA GCATACTT TTCGTCC chr2R:15291778-15291898 34 2.00e-05 GGAAGTTGTT GCATACTT TCAGGCGGTT chr2R:7317703-7317823 68 2.00e-05 GAAAAGATGA GCATACTT CCTAGCATAT chr3L:10644799-10644919 53 2.00e-05 AAATTGTACA GCATACTT TGGGGCGCAC chr2L:15613675-15613795 87 2.00e-05 AATATTATTT GCATACTT TCAGGTGTAG chr3L:21930387-21930507 41 2.00e-05 TGGTTTCGTT GCATACTT TTAGGCGAAA chr2R:23753401-23753521 56 2.00e-05 ACATTTAATA GCATACTT TCAGGCACTT chrX:2645660-2645780 55 2.00e-05 CTTGGGACTT GCATACTT TCGGGCGGCG chr3L:15808783-15808903 97 2.00e-05 CGTTTCTGCT GCATACTT TTGAGCTGTG chr3R:30486114-30486234 53 2.00e-05 TCACTGCGTT GCATACTT TGCGGTGCTC chr3L:21262597-21262717 64 2.00e-05 GCAATTCAAA GCATACTT TTTGGCTGGA chr2L:20341327-20341447 101 2.00e-05 ATATTTCAAA GCATACTT ATGGGTGCTT chr2R:5986933-5987053 39 2.00e-05 TATTTTTATA GCATACTT TTTGATGCGC chr2L:3633995-3634115 78 2.00e-05 AAATATGTTA GCATACTT TTTGGCTGCA chr3R:6388691-6388811 72 2.00e-05 CATATTTAAA GCATACTT TTCGGATATG chr3R:8127882-8128002 70 2.00e-05 ATTTTGGATT GCATACTT CTAGGCTTTG chr2R:12409731-12409851 69 2.00e-05 TTTAATTTCT GCATACTT TGTGGCGGTA chr2L:14197369-14197489 60 2.00e-05 GCAAAAATAA GCATACTT TCTGGCTAAA chr3L:22733819-22733939 65 2.00e-05 TATATGTAGT GCATACTT TCAGTCATTT chr2R:12883198-12883318 58 2.00e-05 TATTTTTGTT GCATACTT TTAGGGTCTG chr2L:11012163-11012283 42 2.00e-05 GATATGCATT GCATACTT TTGGCATGTT chr2R:14766418-14766538 8 3.14e-05 TATAGTT GCCTACTT TATGGCGACG chr2L:2800638-2800758 62 3.14e-05 AAAAGGTCGT GCCTACTT TTGGGCTGAC chrX:19170966-19171086 60 3.14e-05 AAACTCCATT GCCTACTT TCGGGCATTT chrX:1063170-1063290 106 3.14e-05 AATTCATGTT GCCTACTT TTGGGAG chr3R:27057959-27058079 93 3.14e-05 TTAAAACGAA GCCTACTT ATGAGCTGCG chr3R:16611404-16611524 64 3.14e-05 TGACATACTT GCCTACTT TTGGGCCGCG chr3L:19646442-19646562 39 3.14e-05 GGGATGTTTA GCCTACTT ACGGGCATCA chr2R:14534892-14535012 103 3.14e-05 CTACGGGTTT GCCTACTT TGGGGGATCT chrX:17284859-17284979 81 3.14e-05 AAATGTATTT GCCTACTT TTGGGCTTAA chr3L:3931065-3931185 30 4.26e-05 CGAAAGTGTA GCATACTC TTCAGCTGCG chrX:6659997-6660117 88 4.26e-05 CTAAAACGTA GCATACTC TTAAGTGCAC chr3R:11665672-11665792 65 4.26e-05 CAAATTTACT GCATACTC TCGGGCGTAA chr3R:26985478-26985598 48 4.26e-05 CATTATTGTT GCATACTC TTGGGCTTAT chr3R:6210283-6210403 103 4.26e-05 GTTTTTCGTT GCATACTC TTTGGCGTCC chrX:11430244-11430364 49 7.77e-05 AATTTATAAA GAATACTT AGTATGCCTG chr3R:14823092-14823212 2 7.77e-05 G GAATACTT TTAGGAACTC chr3L:7143408-7143528 18 7.77e-05 ACTTGAATCC GAATACTT GGTAGCCCAT chr3L:3316552-3316672 57 7.77e-05 TCTCGAAAGA GAATACTT TTTGAAGTCA chr3L:1850656-1850776 99 7.77e-05 AGAAATCGTT GAATACTT TAGGGGCTCA chr3R:16310409-16310529 20 7.77e-05 GAACTACAAA GAATACTT GCTTAAAAAT chr3R:6190614-6190734 38 1.00e-04 GGCACATAAT GCATACCT TTGGGCGCCA chr2R:24299630-24299750 51 1.00e-04 AATTTGTGTT GCGTACTT CTGGGCTGGC chrX:1169576-1169696 99 1.00e-04 ATGCGCCTTG GCGTACTT TTAGTCAATG chr4:490266-490386 63 1.00e-04 AGATATGTAT GCATACCT TCGGGCTGAA chr3L:5356722-5356842 108 1.35e-04 AAGAAATTAC GCATAATT CCTTG chr3R:30248766-30248886 1 1.35e-04 . GCATAATT TTAGGGTGGA chr3L:18949261-18949381 72 1.35e-04 ATAATTAATT GCATAATT TTTGGGTTGA chrX:13134942-13135062 71 1.35e-04 TAAAAATGTT GCATAATT TCAGGGGCGA chr3L:13900764-13900884 83 1.35e-04 TTTTTGCTCT GCATAATT GATGGCTGAG chrX:19235967-19236087 71 1.71e-04 CATCCCAAAA GTATACTT TTCGAAACTG chr3R:17109023-17109143 88 1.71e-04 GTTTATTGAA GTATACTT TTTGGATGTA chrX:2679547-2679667 48 1.71e-04 GCAAAATGTA GTATACTT TTGGGCTGAG chr3R:17403790-17403910 50 1.71e-04 ACACGCAGGT GTATACTT TTTGCACGAG chr2L:16859787-16859907 16 2.10e-04 AATATAAACT GCAAACTT TCTAGCGAAG chr2R:17493085-17493205 28 2.10e-04 GTTTGCCATT GCATAGTT TTAGGCTGAC chr2R:22287368-22287488 4 2.10e-04 ATC GCAAACTT TTAAATTAAA chr3R:20305979-20306099 76 2.10e-04 ACAATTTGTT GCATAGTT TTGGACTTAA chr2R:11264014-11264134 32 2.52e-04 TATTTATGTA GCATATTT CGCGGCTCCG chr3R:12652875-12652995 78 2.52e-04 TAAGCTTGTT GCATATTT TTTGGCTGAG chr3R:12383911-12384031 72 2.72e-04 CAAAATCGTT GCATACAT TTAGGCTGAT chr3R:19220145-19220265 93 2.92e-04 GGAATCTTGA GACTACTT GCAAGAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7485083-7485203 2e-05 4_[+1]_108 chr2L:4812390-4812510 2e-05 36_[+1]_76 chr3R:6683804-6683924 2e-05 68_[+1]_44 chr3L:8787370-8787490 2e-05 85_[+1]_27 chr2R:19776500-19776620 2e-05 83_[+1]_29 chr2L:3294757-3294877 2e-05 57_[+1]_55 chrX:19640765-19640885 2e-05 74_[+1]_38 chr3L:19569150-19569270 2e-05 50_[+1]_62 chr3L:1883457-1883577 2e-05 106_[+1]_6 chrX:1315517-1315637 2e-05 47_[+1]_65 chr3R:25512889-25513009 2e-05 27_[+1]_85 chrX:2214209-2214329 2e-05 35_[+1]_77 chr3L:16913396-16913516 2e-05 39_[+1]_73 chr2R:23044708-23044828 2e-05 18_[+1]_94 chr2L:8973115-8973235 2e-05 62_[+1]_50 chr2R:10857706-10857826 2e-05 62_[+1]_50 chr2R:12565110-12565230 2e-05 44_[+1]_68 chr3L:2485910-2486030 2e-05 83_[+1]_29 chr3L:4464766-4464886 2e-05 57_[+1]_55 chr2L:1049521-1049641 2e-05 65_[+1]_47 chr2R:10417277-10417397 2e-05 13_[+1]_99 chr2L:3131831-3131951 2e-05 70_[+1]_42 chr3L:1913620-1913740 2e-05 96_[+1]_16 chr2R:23671835-23671955 2e-05 67_[+1]_45 chr3R:6149777-6149897 2e-05 98_[+1]_14 chrX:1963239-1963359 2e-05 52_[+1]_60 chr3R:27071904-27072024 2e-05 32_[+1]_80 chr3L:3766821-3766941 2e-05 62_[+1]_50 chr4:415587-415707 2e-05 79_[+1]_33 chr2R:14427099-14427219 2e-05 22_[+1]_90 chrX:5766882-5767002 2e-05 88_[+1]_24 chr3R:15688543-15688663 2e-05 48_[+1]_64 chr3L:21359948-21360068 2e-05 28_[+1]_84 chrX:19157602-19157722 2e-05 46_[+1]_66 chr3R:4969766-4969886 2e-05 80_[+1]_32 chr3L:15516550-15516670 2e-05 22_[+1]_90 chr2R:18807763-18807883 2e-05 73_[+1]_39 chr2L:11475105-11475225 2e-05 105_[+1]_7 chr2R:15291778-15291898 2e-05 33_[+1]_79 chr2R:7317703-7317823 2e-05 67_[+1]_45 chr3L:10644799-10644919 2e-05 52_[+1]_60 chr2L:15613675-15613795 2e-05 86_[+1]_26 chr3L:21930387-21930507 2e-05 40_[+1]_72 chr2R:23753401-23753521 2e-05 55_[+1]_57 chrX:2645660-2645780 2e-05 54_[+1]_58 chr3L:15808783-15808903 2e-05 96_[+1]_16 chr3R:30486114-30486234 2e-05 52_[+1]_60 chr3L:21262597-21262717 2e-05 63_[+1]_49 chr2L:20341327-20341447 2e-05 100_[+1]_12 chr2R:5986933-5987053 2e-05 38_[+1]_74 chr2L:3633995-3634115 2e-05 77_[+1]_35 chr3R:6388691-6388811 2e-05 71_[+1]_41 chr3R:8127882-8128002 2e-05 69_[+1]_43 chr2R:12409731-12409851 2e-05 68_[+1]_44 chr2L:14197369-14197489 2e-05 59_[+1]_53 chr3L:22733819-22733939 2e-05 64_[+1]_48 chr2R:12883198-12883318 2e-05 57_[+1]_55 chr2L:11012163-11012283 2e-05 41_[+1]_71 chr2R:14766418-14766538 3.1e-05 7_[+1]_105 chr2L:2800638-2800758 3.1e-05 61_[+1]_51 chrX:19170966-19171086 3.1e-05 59_[+1]_53 chrX:1063170-1063290 3.1e-05 105_[+1]_7 chr3R:27057959-27058079 3.1e-05 92_[+1]_20 chr3R:16611404-16611524 3.1e-05 63_[+1]_49 chr3L:19646442-19646562 3.1e-05 38_[+1]_74 chr2R:14534892-14535012 3.1e-05 102_[+1]_10 chrX:17284859-17284979 3.1e-05 80_[+1]_32 chr3L:3931065-3931185 4.3e-05 29_[+1]_83 chrX:6659997-6660117 4.3e-05 87_[+1]_25 chr3R:11665672-11665792 4.3e-05 64_[+1]_48 chr3R:26985478-26985598 4.3e-05 47_[+1]_65 chr3R:6210283-6210403 4.3e-05 102_[+1]_10 chrX:11430244-11430364 7.8e-05 48_[+1]_64 chr3R:14823092-14823212 7.8e-05 1_[+1]_111 chr3L:7143408-7143528 7.8e-05 17_[+1]_95 chr3L:3316552-3316672 7.8e-05 56_[+1]_56 chr3L:1850656-1850776 7.8e-05 98_[+1]_14 chr3R:16310409-16310529 7.8e-05 19_[+1]_93 chr3R:6190614-6190734 0.0001 37_[+1]_75 chr2R:24299630-24299750 0.0001 50_[+1]_62 chrX:1169576-1169696 0.0001 98_[+1]_14 chr4:490266-490386 0.0001 62_[+1]_50 chr3L:5356722-5356842 0.00014 107_[+1]_5 chr3R:30248766-30248886 0.00014 [+1]_112 chr3L:18949261-18949381 0.00014 71_[+1]_41 chrX:13134942-13135062 0.00014 70_[+1]_42 chr3L:13900764-13900884 0.00014 82_[+1]_30 chrX:19235967-19236087 0.00017 70_[+1]_42 chr3R:17109023-17109143 0.00017 87_[+1]_25 chrX:2679547-2679667 0.00017 47_[+1]_65 chr3R:17403790-17403910 0.00017 49_[+1]_63 chr2L:16859787-16859907 0.00021 15_[+1]_97 chr2R:17493085-17493205 0.00021 27_[+1]_85 chr2R:22287368-22287488 0.00021 3_[+1]_109 chr3R:20305979-20306099 0.00021 75_[+1]_37 chr2R:11264014-11264134 0.00025 31_[+1]_81 chr3R:12652875-12652995 0.00025 77_[+1]_35 chr3R:12383911-12384031 0.00027 71_[+1]_41 chr3R:19220145-19220265 0.00029 92_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATACTT width=8 seqs=99 chr3R:7485083-7485203 ( 5) GCATACTT 1 chr2L:4812390-4812510 ( 37) GCATACTT 1 chr3R:6683804-6683924 ( 69) GCATACTT 1 chr3L:8787370-8787490 ( 86) GCATACTT 1 chr2R:19776500-19776620 ( 84) GCATACTT 1 chr2L:3294757-3294877 ( 58) GCATACTT 1 chrX:19640765-19640885 ( 75) GCATACTT 1 chr3L:19569150-19569270 ( 51) GCATACTT 1 chr3L:1883457-1883577 ( 107) GCATACTT 1 chrX:1315517-1315637 ( 48) GCATACTT 1 chr3R:25512889-25513009 ( 28) GCATACTT 1 chrX:2214209-2214329 ( 36) GCATACTT 1 chr3L:16913396-16913516 ( 40) GCATACTT 1 chr2R:23044708-23044828 ( 19) GCATACTT 1 chr2L:8973115-8973235 ( 63) GCATACTT 1 chr2R:10857706-10857826 ( 63) GCATACTT 1 chr2R:12565110-12565230 ( 45) GCATACTT 1 chr3L:2485910-2486030 ( 84) GCATACTT 1 chr3L:4464766-4464886 ( 58) GCATACTT 1 chr2L:1049521-1049641 ( 66) GCATACTT 1 chr2R:10417277-10417397 ( 14) GCATACTT 1 chr2L:3131831-3131951 ( 71) GCATACTT 1 chr3L:1913620-1913740 ( 97) GCATACTT 1 chr2R:23671835-23671955 ( 68) GCATACTT 1 chr3R:6149777-6149897 ( 99) GCATACTT 1 chrX:1963239-1963359 ( 53) GCATACTT 1 chr3R:27071904-27072024 ( 33) GCATACTT 1 chr3L:3766821-3766941 ( 63) GCATACTT 1 chr4:415587-415707 ( 80) GCATACTT 1 chr2R:14427099-14427219 ( 23) GCATACTT 1 chrX:5766882-5767002 ( 89) GCATACTT 1 chr3R:15688543-15688663 ( 49) GCATACTT 1 chr3L:21359948-21360068 ( 29) GCATACTT 1 chrX:19157602-19157722 ( 47) GCATACTT 1 chr3R:4969766-4969886 ( 81) GCATACTT 1 chr3L:15516550-15516670 ( 23) GCATACTT 1 chr2R:18807763-18807883 ( 74) GCATACTT 1 chr2L:11475105-11475225 ( 106) GCATACTT 1 chr2R:15291778-15291898 ( 34) GCATACTT 1 chr2R:7317703-7317823 ( 68) GCATACTT 1 chr3L:10644799-10644919 ( 53) GCATACTT 1 chr2L:15613675-15613795 ( 87) GCATACTT 1 chr3L:21930387-21930507 ( 41) GCATACTT 1 chr2R:23753401-23753521 ( 56) GCATACTT 1 chrX:2645660-2645780 ( 55) GCATACTT 1 chr3L:15808783-15808903 ( 97) GCATACTT 1 chr3R:30486114-30486234 ( 53) GCATACTT 1 chr3L:21262597-21262717 ( 64) GCATACTT 1 chr2L:20341327-20341447 ( 101) GCATACTT 1 chr2R:5986933-5987053 ( 39) GCATACTT 1 chr2L:3633995-3634115 ( 78) GCATACTT 1 chr3R:6388691-6388811 ( 72) GCATACTT 1 chr3R:8127882-8128002 ( 70) GCATACTT 1 chr2R:12409731-12409851 ( 69) GCATACTT 1 chr2L:14197369-14197489 ( 60) GCATACTT 1 chr3L:22733819-22733939 ( 65) GCATACTT 1 chr2R:12883198-12883318 ( 58) GCATACTT 1 chr2L:11012163-11012283 ( 42) GCATACTT 1 chr2R:14766418-14766538 ( 8) GCCTACTT 1 chr2L:2800638-2800758 ( 62) GCCTACTT 1 chrX:19170966-19171086 ( 60) GCCTACTT 1 chrX:1063170-1063290 ( 106) GCCTACTT 1 chr3R:27057959-27058079 ( 93) GCCTACTT 1 chr3R:16611404-16611524 ( 64) GCCTACTT 1 chr3L:19646442-19646562 ( 39) GCCTACTT 1 chr2R:14534892-14535012 ( 103) GCCTACTT 1 chrX:17284859-17284979 ( 81) GCCTACTT 1 chr3L:3931065-3931185 ( 30) GCATACTC 1 chrX:6659997-6660117 ( 88) GCATACTC 1 chr3R:11665672-11665792 ( 65) GCATACTC 1 chr3R:26985478-26985598 ( 48) GCATACTC 1 chr3R:6210283-6210403 ( 103) GCATACTC 1 chrX:11430244-11430364 ( 49) GAATACTT 1 chr3R:14823092-14823212 ( 2) GAATACTT 1 chr3L:7143408-7143528 ( 18) GAATACTT 1 chr3L:3316552-3316672 ( 57) GAATACTT 1 chr3L:1850656-1850776 ( 99) GAATACTT 1 chr3R:16310409-16310529 ( 20) GAATACTT 1 chr3R:6190614-6190734 ( 38) GCATACCT 1 chr2R:24299630-24299750 ( 51) GCGTACTT 1 chrX:1169576-1169696 ( 99) GCGTACTT 1 chr4:490266-490386 ( 63) GCATACCT 1 chr3L:5356722-5356842 ( 108) GCATAATT 1 chr3R:30248766-30248886 ( 1) GCATAATT 1 chr3L:18949261-18949381 ( 72) GCATAATT 1 chrX:13134942-13135062 ( 71) GCATAATT 1 chr3L:13900764-13900884 ( 83) GCATAATT 1 chrX:19235967-19236087 ( 71) GTATACTT 1 chr3R:17109023-17109143 ( 88) GTATACTT 1 chrX:2679547-2679667 ( 48) GTATACTT 1 chr3R:17403790-17403910 ( 50) GTATACTT 1 chr2L:16859787-16859907 ( 16) GCAAACTT 1 chr2R:17493085-17493205 ( 28) GCATAGTT 1 chr2R:22287368-22287488 ( 4) GCAAACTT 1 chr3R:20305979-20306099 ( 76) GCATAGTT 1 chr2R:11264014-11264134 ( 32) GCATATTT 1 chr3R:12652875-12652995 ( 78) GCATATTT 1 chr3R:12383911-12384031 ( 72) GCATACAT 1 chr3R:19220145-19220265 ( 93) GACTACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.63259 E= 2.9e-097 -1327 -1327 248 -1327 -217 230 -1327 -300 147 -84 -314 -1327 -397 -1327 -1327 160 165 -1327 -1327 -1327 -265 233 -314 -400 -497 -316 -1327 159 -1327 -184 -1327 156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 2.9e-097 0.000000 0.000000 1.000000 0.000000 0.070707 0.888889 0.000000 0.040404 0.878788 0.101010 0.020202 0.000000 0.020202 0.000000 0.000000 0.979798 1.000000 0.000000 0.000000 0.000000 0.050505 0.909091 0.020202 0.020202 0.010101 0.020202 0.000000 0.969697 0.000000 0.050505 0.000000 0.949495 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-1 regular expression -------------------------------------------------------------------------------- GCATACTT -------------------------------------------------------------------------------- Time 8.08 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGTATGC MEME-2 width = 8 sites = 115 llr = 981 E-value = 4.3e-095 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9a11a::: pos.-specific C ::1::::a probability G 1:8::2a: matrix T :::9:8:: bits 2.5 2.2 ** 2.0 ** 1.7 ** Relative 1.5 ** * ** Entropy 1.2 ***** ** (12.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGTATGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19378736-19378856 36 1.95e-05 AGCAGCCCGA AAGTATGC CTTTGTCCGA chr2L:3762840-3762960 67 1.95e-05 ATCTGCCCAA AAGTATGC ATTGGATATA chrX:18520537-18520657 14 1.95e-05 CGTTGCCTGA AAGTATGC TCCATAATCC chr2R:21199554-21199674 110 1.95e-05 CACGGCCAAC AAGTATGC AAT chr3R:4712219-4712339 83 1.95e-05 TTTCGCCCAA AAGTATGC ATTACGAATA chr3R:6206471-6206591 50 1.95e-05 TTCCGCCCGA AAGTATGC CGTAATTAAT chrX:1523441-1523561 58 1.95e-05 GAATGCCCAG AAGTATGC CACACTTTTT chr3R:19915773-19915893 77 1.95e-05 TTATTCCCAA AAGTATGC AACCCAATAT chr3L:20910389-20910509 83 1.95e-05 TACTGCCTAA AAGTATGC TTTAATAGAA chr3R:16984324-16984444 74 1.95e-05 ATATACCCAT AAGTATGC TATAAATAAT chr3L:7143408-7143528 71 1.95e-05 TTCAGACGAA AAGTATGC AGCATTGAAA chr2L:8973115-8973235 1 1.95e-05 . AAGTATGC AGCACTATAT chr2R:9056123-9056243 48 1.95e-05 GTCGGACTAA AAGTATGC AATAAAAGCA chrX:9643560-9643680 66 1.95e-05 TTCTGCCCAA AAGTATGC CACGCTGGCC chr2R:23671835-23671955 26 1.95e-05 GACAGCCCCC AAGTATGC AGCGCCTGCG chr2R:20230897-20231017 88 1.95e-05 GTTATCCTAA AAGTATGC AACGCAAAGA chrX:16889127-16889247 49 1.95e-05 GCAACCCGAA AAGTATGC TACTGCTCCG chr3R:5846845-5846965 21 1.95e-05 TAGGGCATAA AAGTATGC AATGTTATAA chr3L:4219424-4219544 38 1.95e-05 AATGGCCTAA AAGTATGC ACCACAATTG chr3R:16068351-16068471 62 1.95e-05 CGCCGCCCAA AAGTATGC AATAACTTTT chr3L:28091273-28091393 39 1.95e-05 tatttcgtca aagtatgc agtatttttt chr3R:10437132-10437252 38 1.95e-05 TAAAGCCTGT AAGTATGC AATATTTTTG chr2L:6717143-6717263 55 1.95e-05 AAATGCCCAA AAGTATGC AGTGACTTAA chr2R:24757133-24757253 92 1.95e-05 TTGAGCCGGA AAGTATGC TTCTGTTTTG chr3R:30844930-30845050 64 1.95e-05 TATTGAAATC AAGTATGC CTAAAAGCAT chr3L:3316552-3316672 99 1.95e-05 ATCAGCCCTA AAGTATGC CCTTCCATGA chr3L:3076697-3076817 66 1.95e-05 TCGCGCTGGA AAGTATGC AACACATTCT chr3L:9203146-9203266 28 1.95e-05 TTCATCCTTA AAGTATGC CACAACATTG chr3R:19220145-19220265 58 1.95e-05 TCAAGCCCCA AAGTATGC AGCACCTATT chr3R:11452185-11452305 84 1.95e-05 ATCAGCCGAA AAGTATGC CAAATTGAAC chr2L:10671680-10671800 48 1.95e-05 CCACATGCAA AAGTATGC AATGTTTTTT chr2R:25038564-25038684 42 1.95e-05 TTCAGTCGAA AAGTATGC AACATACGCA chr2R:7317703-7317823 20 1.95e-05 CAATGCCTAA AAGTATGC AATGAAAAGA chr3L:1831877-1831997 40 1.95e-05 GCAGCCCCAT AAGTATGC AGAGAAAATC chr3L:3457040-3457160 56 1.95e-05 TGTCGCCGAA AAGTATGC TATGAATCCT chr2R:13132512-13132632 33 1.95e-05 AAGCGCCTGA AAGTATGC AACAATATAT chrX:1169576-1169696 46 1.95e-05 CAAATCTTAA AAGTATGC TTTGCATTTA chr3L:7815829-7815949 76 1.95e-05 TTGCGCTCGG AAGTATGC TACGTTAAAG chr3L:13900764-13900884 18 1.95e-05 GACAACCGAA AAGTATGC AACACTTTTG chrX:18772148-18772268 51 1.95e-05 TTGCGCAGCC AAGTATGC TACGCATTTG chr3R:20286958-20287078 83 1.95e-05 TCATGCCCAG AAGTATGC AACACTTTTG chr2L:18513508-18513628 27 1.95e-05 AGTTGCTACA AAGTATGC AATTACTTTC chr2L:5804168-5804288 68 1.95e-05 CAGCGCTGAA AAGTATGC AACATTTTTA chr3R:22072695-22072815 70 1.95e-05 CAGTGCCATA AAGTATGC ATTGAGATTT chrX:11555085-11555205 68 1.95e-05 CATGGCCCAA AAGTATGC AACACTTTTT chr2R:23421236-23421356 43 1.95e-05 CCTTGCCTAC AAGTATGC AAGCTTTTCG chr3L:3315423-3315543 65 1.95e-05 AAAGGCCCAA AAGTATGC CTTTCGAAAG chr2L:8974625-8974745 42 1.95e-05 GGTATCCCGA AAGTATGC TGCAAAATAG chr3L:1191691-1191811 11 1.95e-05 ATCCAGCTAA AAGTATGC CTTCTATGCA chr2L:19622-19742 53 1.95e-05 TAATGCCCAA AAGTATGC ACATAGGAGA chrX:12757196-12757316 63 1.95e-05 CTCAGCCCAA AAGTATGC TACTAATTAG chrX:9889852-9889972 5 1.95e-05 CTGA AAGTATGC AGCCGAAATT chr2R:9183213-9183333 18 1.95e-05 TGAACCCCAA AAGTATGC AATAAAATCT chr3R:12363672-12363792 78 1.95e-05 TGACGCCAAG AAGTATGC TATGATTTTG chr2R:16670193-16670313 57 3.02e-05 GAATGCCCAA AAGTAGGC AACGTTTCGA chr2L:21085757-21085877 29 3.02e-05 TTCCTCCTAA AAGTAGGC AAACATATTA chr3L:9064323-9064443 57 3.02e-05 CCCAGCCGAA AAGTAGGC AACACAAAAC chr3L:968301-968421 70 3.02e-05 ATATGCCTTA AAGTAGGC ACTTATAAGT chr3R:25721165-25721285 81 3.02e-05 TGCTGCCCGA AAGTAGGC AATGCTAAAA chr2L:14184342-14184462 73 3.02e-05 CGCAGCCTGG AAGTAGGC AACCGATATT chrX:265815-265935 106 3.02e-05 CGCTCCCCAA AAGTAGGC AACTGTT chr3L:18957142-18957262 21 3.02e-05 TTCAGCCATA AAGTAGGC AACCAAAATC chrX:21061761-21061881 35 3.02e-05 CAAAGCCGAG AAGTAGGC AATCCACTCG chr2L:5270332-5270452 43 3.02e-05 AACAGCCAAA AAGTAGGC TATGATATGT chrX:4214517-4214637 20 4.12e-05 CGCCGCCCGT GAGTATGC AATAAATTAT chr2R:21352716-21352836 111 4.12e-05 CAACGCCAAA GAGTATGC TA chr3R:16620006-16620126 60 4.12e-05 GGATGCCTAA GAGTATGC TTTGAAATTT chr3L:5356722-5356842 68 7.18e-05 GGAAAATTTA AAGCATGC TTTCAAGCTG chr3L:6129778-6129898 83 7.18e-05 TTTATGATTA AACTATGC ACTTTAAATC chr3R:31677987-31678107 105 7.18e-05 TCCAGCCCGA AAGCATGC TATGCAAA chr3L:12008086-12008206 34 7.18e-05 AACAGCTCAA AACTATGC ACTAATAAGT chr2R:8435075-8435195 61 7.18e-05 AAACACCGAA AACTATGC TATGCTTAAG chr3L:15809964-15810084 67 7.18e-05 ATCATCCAAA AAGCATGC CCCACAATAG chr2L:7693599-7693719 24 7.18e-05 AGTGATCTTG AACTATGC AATATCATGA chr2R:19699773-19699893 74 7.18e-05 ATCTGCCCAA AACTATGC TATGGAACCG chr3L:22456056-22456176 13 7.78e-05 TGGGGCCTTA GAGTAGGC TATTAGTTCT chr3R:27056312-27056432 77 7.78e-05 CGCAGCCTAA GAGTAGGC TACACAAATG chr2R:7759816-7759936 57 9.70e-05 GTGACATATA AAGAATGC ATATGTATAA chr2L:19399446-19399566 82 9.70e-05 TTGCCCCAAT AAGAATGC CTTTGTATGC chr3R:19638815-19638935 33 9.70e-05 TAAGGCCTAA AAGAATGC TATAATTTTG chr3R:18390175-18390295 35 9.70e-05 AACATCCCAA AAGAATGC TACAAAAAAA chr3R:19929150-19929270 22 9.70e-05 GAGCACCTAA AAGAATGC AAAACAAATA chr3R:5268631-5268751 72 1.79e-04 TTTTGCCTGT AGGTATGC TAGAATTTAA chr3L:17891536-17891656 49 1.79e-04 AAAAACCTAA AAATATGC AACAATATTG chrX:5766882-5767002 39 1.79e-04 TAATGCCTAA AACTAGGC CACACATATT chrX:3177462-3177582 109 1.79e-04 CTCAGCCCAA AAATATGC GTTC chr3R:26985478-26985598 84 1.79e-04 TCTGAGCTTG AAATATGC CTGGTTAGGC chr3L:8071809-8071929 72 1.79e-04 GCCTGGAAAT AAATATGC GCCTGGAAGA chr3R:30898712-30898832 63 1.79e-04 GTCAGCCTGA AAATATGC AATTTACTAC chrX:13134942-13135062 102 2.14e-04 GTTCATGTCA AATTATGC CTAAAACATA chrX:1063170-1063290 36 2.14e-04 GCGCATTCAA AATTATGC TGTGATTTTA chr3R:6458996-6459116 53 2.14e-04 CTATGCTGAA AATTATGC AATAAATATG chr3R:6124458-6124578 16 2.14e-04 CTAATTTCCC AATTATGC ATGTATTGCC chr3L:8329150-8329270 29 2.94e-04 TTAATCACAA AAGTATAC GCCGCATTGT chr3L:3267362-3267482 28 2.94e-04 TATAGCCTAA AAGTATAC TATATATATA chr3L:17549337-17549457 72 2.94e-04 CGGCAATTAA AAGTATGT TACAATTTCT chrX:10489896-10490016 55 2.94e-04 CTTAGCCCCA AAGTATGT TGCATATAAG chr2L:138264-138384 80 2.94e-04 CCTGTTGGTA AAGTATAC TACACTGATA chr3R:16310409-16310529 79 2.94e-04 CTATGCCTAA AAGTATGT TCACTTTTCC chrX:1315517-1315637 17 3.16e-04 CCTGCCTCAA AAGTTGGC CGCCTATGGA chr2R:23044708-23044828 82 3.16e-04 TTTATCCAAA AAGTTGGC AACATTTATT chr3L:16291835-16291955 52 3.16e-04 AAAAGCCCAA AAGTTGGC CGCGTCTTGT chrX:1963239-1963359 104 3.16e-04 AATAAGCATT CAGTATGC TTATGTATA chr2R:14427099-14427219 51 3.16e-04 TGAAGAAAAC AAGTTGGC AGCCCCAATT chr3L:17898706-17898826 103 3.41e-04 GAAACCCTAA AGGTAGGC TTCATAAATG chr4:415587-415707 28 3.41e-04 CCGAGCCCGA AAATAGGC AACGTTCGTC chr3L:13860104-13860224 107 3.61e-04 TCGTTTATAA AATTAGGC GGATCA chrX:149852-149972 81 3.99e-04 TAGGGACTTT AAGTAGGT CAAAATATTT chr3R:6149777-6149897 81 3.99e-04 ACCGAACGCA AAGTAGGT ATTAGGCTTT chr2L:20869032-20869152 53 3.99e-04 GTCAGCCCGA AAGTAGAC TAACCCAATG chr2R:17493085-17493205 48 3.99e-04 AGGCTGACTT AAGTAGAC ACAAAACTAC chr3R:6286619-6286739 39 4.18e-04 GTAAGCCCAA AAGTAAGC TTTACAGAAA chr3L:20183854-20183974 95 4.36e-04 CCAATAAGAA GAGCATGC TCCACCATGA chrX:10841032-10841152 38 4.36e-04 CTACAAGTTA GACTATGC TATTGCAATT chrX:6659997-6660117 108 4.53e-04 AAGTGCACAT GAGAATGC CAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19378736-19378856 1.9e-05 35_[+2]_77 chr2L:3762840-3762960 1.9e-05 66_[+2]_46 chrX:18520537-18520657 1.9e-05 13_[+2]_99 chr2R:21199554-21199674 1.9e-05 109_[+2]_3 chr3R:4712219-4712339 1.9e-05 82_[+2]_30 chr3R:6206471-6206591 1.9e-05 49_[+2]_63 chrX:1523441-1523561 1.9e-05 57_[+2]_55 chr3R:19915773-19915893 1.9e-05 76_[+2]_36 chr3L:20910389-20910509 1.9e-05 82_[+2]_30 chr3R:16984324-16984444 1.9e-05 73_[+2]_39 chr3L:7143408-7143528 1.9e-05 70_[+2]_42 chr2L:8973115-8973235 1.9e-05 [+2]_112 chr2R:9056123-9056243 1.9e-05 47_[+2]_65 chrX:9643560-9643680 1.9e-05 65_[+2]_47 chr2R:23671835-23671955 1.9e-05 25_[+2]_87 chr2R:20230897-20231017 1.9e-05 87_[+2]_25 chrX:16889127-16889247 1.9e-05 48_[+2]_64 chr3R:5846845-5846965 1.9e-05 20_[+2]_92 chr3L:4219424-4219544 1.9e-05 37_[+2]_75 chr3R:16068351-16068471 1.9e-05 61_[+2]_51 chr3L:28091273-28091393 1.9e-05 38_[+2]_74 chr3R:10437132-10437252 1.9e-05 37_[+2]_75 chr2L:6717143-6717263 1.9e-05 54_[+2]_58 chr2R:24757133-24757253 1.9e-05 91_[+2]_21 chr3R:30844930-30845050 1.9e-05 63_[+2]_49 chr3L:3316552-3316672 1.9e-05 98_[+2]_14 chr3L:3076697-3076817 1.9e-05 65_[+2]_47 chr3L:9203146-9203266 1.9e-05 27_[+2]_85 chr3R:19220145-19220265 1.9e-05 57_[+2]_55 chr3R:11452185-11452305 1.9e-05 83_[+2]_29 chr2L:10671680-10671800 1.9e-05 47_[+2]_65 chr2R:25038564-25038684 1.9e-05 41_[+2]_71 chr2R:7317703-7317823 1.9e-05 19_[+2]_93 chr3L:1831877-1831997 1.9e-05 39_[+2]_73 chr3L:3457040-3457160 1.9e-05 55_[+2]_57 chr2R:13132512-13132632 1.9e-05 32_[+2]_80 chrX:1169576-1169696 1.9e-05 45_[+2]_67 chr3L:7815829-7815949 1.9e-05 75_[+2]_37 chr3L:13900764-13900884 1.9e-05 17_[+2]_95 chrX:18772148-18772268 1.9e-05 50_[+2]_62 chr3R:20286958-20287078 1.9e-05 82_[+2]_30 chr2L:18513508-18513628 1.9e-05 26_[+2]_86 chr2L:5804168-5804288 1.9e-05 67_[+2]_45 chr3R:22072695-22072815 1.9e-05 69_[+2]_43 chrX:11555085-11555205 1.9e-05 67_[+2]_45 chr2R:23421236-23421356 1.9e-05 42_[+2]_70 chr3L:3315423-3315543 1.9e-05 64_[+2]_48 chr2L:8974625-8974745 1.9e-05 41_[+2]_71 chr3L:1191691-1191811 1.9e-05 10_[+2]_102 chr2L:19622-19742 1.9e-05 52_[+2]_60 chrX:12757196-12757316 1.9e-05 62_[+2]_50 chrX:9889852-9889972 1.9e-05 4_[+2]_108 chr2R:9183213-9183333 1.9e-05 17_[+2]_95 chr3R:12363672-12363792 1.9e-05 77_[+2]_35 chr2R:16670193-16670313 3e-05 56_[+2]_56 chr2L:21085757-21085877 3e-05 28_[+2]_84 chr3L:9064323-9064443 3e-05 56_[+2]_56 chr3L:968301-968421 3e-05 69_[+2]_43 chr3R:25721165-25721285 3e-05 80_[+2]_32 chr2L:14184342-14184462 3e-05 72_[+2]_40 chrX:265815-265935 3e-05 105_[+2]_7 chr3L:18957142-18957262 3e-05 20_[+2]_92 chrX:21061761-21061881 3e-05 34_[+2]_78 chr2L:5270332-5270452 3e-05 42_[+2]_70 chrX:4214517-4214637 4.1e-05 19_[+2]_93 chr2R:21352716-21352836 4.1e-05 110_[+2]_2 chr3R:16620006-16620126 4.1e-05 59_[+2]_53 chr3L:5356722-5356842 7.2e-05 67_[+2]_45 chr3L:6129778-6129898 7.2e-05 82_[+2]_30 chr3R:31677987-31678107 7.2e-05 104_[+2]_8 chr3L:12008086-12008206 7.2e-05 33_[+2]_79 chr2R:8435075-8435195 7.2e-05 60_[+2]_52 chr3L:15809964-15810084 7.2e-05 66_[+2]_46 chr2L:7693599-7693719 7.2e-05 23_[+2]_89 chr2R:19699773-19699893 7.2e-05 73_[+2]_39 chr3L:22456056-22456176 7.8e-05 12_[+2]_100 chr3R:27056312-27056432 7.8e-05 76_[+2]_36 chr2R:7759816-7759936 9.7e-05 56_[+2]_56 chr2L:19399446-19399566 9.7e-05 81_[+2]_31 chr3R:19638815-19638935 9.7e-05 32_[+2]_80 chr3R:18390175-18390295 9.7e-05 34_[+2]_78 chr3R:19929150-19929270 9.7e-05 21_[+2]_91 chr3R:5268631-5268751 0.00018 71_[+2]_41 chr3L:17891536-17891656 0.00018 48_[+2]_64 chrX:5766882-5767002 0.00018 38_[+2]_74 chrX:3177462-3177582 0.00018 108_[+2]_4 chr3R:26985478-26985598 0.00018 83_[+2]_29 chr3L:8071809-8071929 0.00018 71_[+2]_41 chr3R:30898712-30898832 0.00018 62_[+2]_50 chrX:13134942-13135062 0.00021 101_[+2]_11 chrX:1063170-1063290 0.00021 35_[+2]_77 chr3R:6458996-6459116 0.00021 52_[+2]_60 chr3R:6124458-6124578 0.00021 15_[+2]_97 chr3L:8329150-8329270 0.00029 28_[+2]_84 chr3L:3267362-3267482 0.00029 27_[+2]_85 chr3L:17549337-17549457 0.00029 71_[+2]_41 chrX:10489896-10490016 0.00029 54_[+2]_58 chr2L:138264-138384 0.00029 79_[+2]_33 chr3R:16310409-16310529 0.00029 78_[+2]_34 chrX:1315517-1315637 0.00032 16_[+2]_96 chr2R:23044708-23044828 0.00032 81_[+2]_31 chr3L:16291835-16291955 0.00032 51_[+2]_61 chrX:1963239-1963359 0.00032 103_[+2]_9 chr2R:14427099-14427219 0.00032 50_[+2]_62 chr3L:17898706-17898826 0.00034 102_[+2]_10 chr4:415587-415707 0.00034 27_[+2]_85 chr3L:13860104-13860224 0.00036 106_[+2]_6 chrX:149852-149972 0.0004 80_[+2]_32 chr3R:6149777-6149897 0.0004 80_[+2]_32 chr2L:20869032-20869152 0.0004 52_[+2]_60 chr2R:17493085-17493205 0.0004 47_[+2]_65 chr3R:6286619-6286739 0.00042 38_[+2]_74 chr3L:20183854-20183974 0.00044 94_[+2]_18 chrX:10841032-10841152 0.00044 37_[+2]_75 chrX:6659997-6660117 0.00045 107_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGTATGC width=8 seqs=115 chr2L:19378736-19378856 ( 36) AAGTATGC 1 chr2L:3762840-3762960 ( 67) AAGTATGC 1 chrX:18520537-18520657 ( 14) AAGTATGC 1 chr2R:21199554-21199674 ( 110) AAGTATGC 1 chr3R:4712219-4712339 ( 83) AAGTATGC 1 chr3R:6206471-6206591 ( 50) AAGTATGC 1 chrX:1523441-1523561 ( 58) AAGTATGC 1 chr3R:19915773-19915893 ( 77) AAGTATGC 1 chr3L:20910389-20910509 ( 83) AAGTATGC 1 chr3R:16984324-16984444 ( 74) AAGTATGC 1 chr3L:7143408-7143528 ( 71) AAGTATGC 1 chr2L:8973115-8973235 ( 1) AAGTATGC 1 chr2R:9056123-9056243 ( 48) AAGTATGC 1 chrX:9643560-9643680 ( 66) AAGTATGC 1 chr2R:23671835-23671955 ( 26) AAGTATGC 1 chr2R:20230897-20231017 ( 88) AAGTATGC 1 chrX:16889127-16889247 ( 49) AAGTATGC 1 chr3R:5846845-5846965 ( 21) AAGTATGC 1 chr3L:4219424-4219544 ( 38) AAGTATGC 1 chr3R:16068351-16068471 ( 62) AAGTATGC 1 chr3L:28091273-28091393 ( 39) AAGTATGC 1 chr3R:10437132-10437252 ( 38) AAGTATGC 1 chr2L:6717143-6717263 ( 55) AAGTATGC 1 chr2R:24757133-24757253 ( 92) AAGTATGC 1 chr3R:30844930-30845050 ( 64) AAGTATGC 1 chr3L:3316552-3316672 ( 99) AAGTATGC 1 chr3L:3076697-3076817 ( 66) AAGTATGC 1 chr3L:9203146-9203266 ( 28) AAGTATGC 1 chr3R:19220145-19220265 ( 58) AAGTATGC 1 chr3R:11452185-11452305 ( 84) AAGTATGC 1 chr2L:10671680-10671800 ( 48) AAGTATGC 1 chr2R:25038564-25038684 ( 42) AAGTATGC 1 chr2R:7317703-7317823 ( 20) AAGTATGC 1 chr3L:1831877-1831997 ( 40) AAGTATGC 1 chr3L:3457040-3457160 ( 56) AAGTATGC 1 chr2R:13132512-13132632 ( 33) AAGTATGC 1 chrX:1169576-1169696 ( 46) AAGTATGC 1 chr3L:7815829-7815949 ( 76) AAGTATGC 1 chr3L:13900764-13900884 ( 18) AAGTATGC 1 chrX:18772148-18772268 ( 51) AAGTATGC 1 chr3R:20286958-20287078 ( 83) AAGTATGC 1 chr2L:18513508-18513628 ( 27) AAGTATGC 1 chr2L:5804168-5804288 ( 68) AAGTATGC 1 chr3R:22072695-22072815 ( 70) AAGTATGC 1 chrX:11555085-11555205 ( 68) AAGTATGC 1 chr2R:23421236-23421356 ( 43) AAGTATGC 1 chr3L:3315423-3315543 ( 65) AAGTATGC 1 chr2L:8974625-8974745 ( 42) AAGTATGC 1 chr3L:1191691-1191811 ( 11) AAGTATGC 1 chr2L:19622-19742 ( 53) AAGTATGC 1 chrX:12757196-12757316 ( 63) AAGTATGC 1 chrX:9889852-9889972 ( 5) AAGTATGC 1 chr2R:9183213-9183333 ( 18) AAGTATGC 1 chr3R:12363672-12363792 ( 78) AAGTATGC 1 chr2R:16670193-16670313 ( 57) AAGTAGGC 1 chr2L:21085757-21085877 ( 29) AAGTAGGC 1 chr3L:9064323-9064443 ( 57) AAGTAGGC 1 chr3L:968301-968421 ( 70) AAGTAGGC 1 chr3R:25721165-25721285 ( 81) AAGTAGGC 1 chr2L:14184342-14184462 ( 73) AAGTAGGC 1 chrX:265815-265935 ( 106) AAGTAGGC 1 chr3L:18957142-18957262 ( 21) AAGTAGGC 1 chrX:21061761-21061881 ( 35) AAGTAGGC 1 chr2L:5270332-5270452 ( 43) AAGTAGGC 1 chrX:4214517-4214637 ( 20) GAGTATGC 1 chr2R:21352716-21352836 ( 111) GAGTATGC 1 chr3R:16620006-16620126 ( 60) GAGTATGC 1 chr3L:5356722-5356842 ( 68) AAGCATGC 1 chr3L:6129778-6129898 ( 83) AACTATGC 1 chr3R:31677987-31678107 ( 105) AAGCATGC 1 chr3L:12008086-12008206 ( 34) AACTATGC 1 chr2R:8435075-8435195 ( 61) AACTATGC 1 chr3L:15809964-15810084 ( 67) AAGCATGC 1 chr2L:7693599-7693719 ( 24) AACTATGC 1 chr2R:19699773-19699893 ( 74) AACTATGC 1 chr3L:22456056-22456176 ( 13) GAGTAGGC 1 chr3R:27056312-27056432 ( 77) GAGTAGGC 1 chr2R:7759816-7759936 ( 57) AAGAATGC 1 chr2L:19399446-19399566 ( 82) AAGAATGC 1 chr3R:19638815-19638935 ( 33) AAGAATGC 1 chr3R:18390175-18390295 ( 35) AAGAATGC 1 chr3R:19929150-19929270 ( 22) AAGAATGC 1 chr3R:5268631-5268751 ( 72) AGGTATGC 1 chr3L:17891536-17891656 ( 49) AAATATGC 1 chrX:5766882-5767002 ( 39) AACTAGGC 1 chrX:3177462-3177582 ( 109) AAATATGC 1 chr3R:26985478-26985598 ( 84) AAATATGC 1 chr3L:8071809-8071929 ( 72) AAATATGC 1 chr3R:30898712-30898832 ( 63) AAATATGC 1 chrX:13134942-13135062 ( 102) AATTATGC 1 chrX:1063170-1063290 ( 36) AATTATGC 1 chr3R:6458996-6459116 ( 53) AATTATGC 1 chr3R:6124458-6124578 ( 16) AATTATGC 1 chr3L:8329150-8329270 ( 29) AAGTATAC 1 chr3L:3267362-3267482 ( 28) AAGTATAC 1 chr3L:17549337-17549457 ( 72) AAGTATGT 1 chrX:10489896-10490016 ( 55) AAGTATGT 1 chr2L:138264-138384 ( 80) AAGTATAC 1 chr3R:16310409-16310529 ( 79) AAGTATGT 1 chrX:1315517-1315637 ( 17) AAGTTGGC 1 chr2R:23044708-23044828 ( 82) AAGTTGGC 1 chr3L:16291835-16291955 ( 52) AAGTTGGC 1 chrX:1963239-1963359 ( 104) CAGTATGC 1 chr2R:14427099-14427219 ( 51) AAGTTGGC 1 chr3L:17898706-17898826 ( 103) AGGTAGGC 1 chr4:415587-415707 ( 28) AAATAGGC 1 chr3L:13860104-13860224 ( 107) AATTAGGC 1 chrX:149852-149972 ( 81) AAGTAGGT 1 chr3R:6149777-6149897 ( 81) AAGTAGGT 1 chr2L:20869032-20869152 ( 53) AAGTAGAC 1 chr2R:17493085-17493205 ( 48) AAGTAGAC 1 chr3R:6286619-6286739 ( 39) AAGTAAGC 1 chr3L:20183854-20183974 ( 95) GAGCATGC 1 chrX:10841032-10841152 ( 38) GACTATGC 1 chrX:6659997-6660117 ( 108) GAGAATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.56882 E= 4.3e-095 154 -437 -136 -1349 163 -1349 -336 -1349 -261 -157 224 -289 -261 -238 -1349 150 160 -1349 -1349 -321 -519 -1349 22 128 -287 -1349 242 -1349 -1349 240 -1349 -289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 4.3e-095 0.921739 0.008696 0.069565 0.000000 0.982609 0.000000 0.017391 0.000000 0.052174 0.060870 0.843478 0.043478 0.052174 0.034783 0.000000 0.913043 0.965217 0.000000 0.000000 0.034783 0.008696 0.000000 0.208696 0.782609 0.043478 0.000000 0.956522 0.000000 0.000000 0.956522 0.000000 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-2 regular expression -------------------------------------------------------------------------------- AAGTA[TG]GC -------------------------------------------------------------------------------- Time 14.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGCCCAA MEME-3 width = 8 sites = 45 llr = 385 E-value = 6.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 26:::17a pos.-specific C 81:aa6:: probability G ::a:::3: matrix T :3:::2:: bits 2.5 *** 2.2 *** 2.0 *** 1.7 *** Relative 1.5 *** * Entropy 1.2 * *** * (12.3 bits) 1.0 * *** ** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCCAA consensus T TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19776500-19776620 17 6.18e-06 AGTCGAAAAA CAGCCCAA AAGAGCTCCA chrX:19170966-19171086 33 6.18e-06 AATTATTTTA CAGCCCAA AAGGCTGCCA chrX:3177462-3177582 101 6.18e-06 TTTAATGGCT CAGCCCAA AAATATGCGT chrX:12757196-12757316 55 6.18e-06 GTCATCGTCT CAGCCCAA AAGTATGCTA chr2L:19378736-19378856 28 9.66e-06 ATTCAGCCAG CAGCCCGA AAGTATGCCT chr2R:8137724-8137844 44 9.66e-06 ACGATCTGAG CAGCCCGA GGGTATGCAA chr3R:31677987-31678107 97 9.66e-06 AAGGCAGCTC CAGCCCGA AAGCATGCTA chr2L:20869032-20869152 45 9.66e-06 TACGATAAGT CAGCCCGA AAGTAGACTA chrX:22443233-22443353 10 9.66e-06 TAAAATAAA CAGCCCGA AAATATGTGA chr2L:3762840-3762960 59 1.59e-05 TATGCAGTAT CTGCCCAA AAGTATGCAT chrX:9643560-9643680 58 1.59e-05 TTCGAGCTTT CTGCCCAA AAGTATGCCA chr2R:19699773-19699893 66 1.59e-05 ACTTAACAAT CTGCCCAA AACTATGCTA chr3R:25721165-25721285 73 1.95e-05 TTAAGCACTG CTGCCCGA AAGTAGGCAA chr3R:27056312-27056432 69 3.05e-05 AAAGTTTTCG CAGCCTAA GAGTAGGCTA chr2R:10857706-10857826 76 3.05e-05 TACTTTTGGG CAGCCTAA TTTATAAGTG chr3L:1199448-1199568 57 3.05e-05 TAATATTTAG CAGCCTAA AAGATAACTT chr2L:7693599-7693719 72 3.05e-05 GTGAATGATA CAGCCTAA TGGTATGCTT chr3R:16068351-16068471 54 3.40e-05 TTTCCCGACG CCGCCCAA AAGTATGCAA chr2R:21199554-21199674 44 4.02e-05 TAAAGTGCAT CAGCCTGA AAGTAGGCAA chr3L:8329150-8329270 82 4.02e-05 AGTATACAAT CAGCCTGA AGTTACACCC chr2L:3889932-3890052 96 4.02e-05 AATGTTCACA CAGCCTGA CAAATTTGAT chr3R:30898712-30898832 55 4.02e-05 AATCTGTTGT CAGCCTGA AAATATGCAA chr3R:6206471-6206591 42 5.30e-05 AGTTCGGTTT CCGCCCGA AAGTATGCCG chr3L:11135870-11135990 71 5.30e-05 ATGGTCAAGA AAGCCCAA CAAAAGTTTT chr3L:16291835-16291955 44 5.30e-05 AGCCGTGGAA AAGCCCAA AAGTTGGCCG chr3R:27057959-27058079 36 5.30e-05 AGTTTCCGTA AAGCCCAA AATGATGCAA chr3R:6286619-6286739 31 5.30e-05 TTTCAAAGGT AAGCCCAA AAGTAAGCTT chr3L:1839558-1839678 47 6.39e-05 TTGTTTATAG CAGCCAAA AAGCACACAT chr2L:5270332-5270452 35 6.39e-05 TTGATCGTAA CAGCCAAA AAGTAGGCTA chr3L:20910389-20910509 75 8.12e-05 TTAAACGCTA CTGCCTAA AAGTATGCTT chr3R:20286958-20287078 51 8.12e-05 TGTGGCAACT CTGCCTAA CGGTCGTATA chr3L:9064323-9064443 49 9.97e-05 TAACACTACC CAGCCGAA AAGTAGGCAA chr3R:11452185-11452305 76 9.97e-05 TTGTCAGCAT CAGCCGAA AAGTATGCCA chr2R:16670193-16670313 49 1.11e-04 TTTGCCGCGA ATGCCCAA AAGTAGGCAA chr2L:6717143-6717263 47 1.11e-04 CTTAAATCAA ATGCCCAA AAGTATGCAG chr2L:19622-19742 45 1.11e-04 CTAAATGTTA ATGCCCAA AAGTATGCAC chrX:12478521-12478641 48 1.22e-04 ACTTTTGGGG CTGCCAAA AGTGAAGTCA chr3R:19929150-19929270 74 1.22e-04 CCCCACAAGC CTGCCAAA TTTGGATGAC chr3L:1831877-1831997 31 1.29e-04 TTGCAAAACG CAGCCCCA TAAGTATGCA chr3L:968301-968421 21 1.35e-04 ATCTGCATCT ATGCCCGA GAGTATGCCA chr3L:9203146-9203266 64 1.41e-04 GTCGCAGATA CTGCCAGA AAGTAGGCAA chrX:4214517-4214637 67 1.63e-04 AAATGGCTGT GAGCCCAA AAGCGGGCTA chr2L:16859787-16859907 62 2.11e-04 CTCAAAAAAC CCGCCAAA AGGTGTGCTA chr2L:10671680-10671800 34 2.25e-04 TTACATCTTA CTGCCCAC ATGCAAAAGT chr2L:11475105-11475225 42 2.40e-04 AGACTTTGTT TAGCCCAA AAATATGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19776500-19776620 6.2e-06 16_[+3]_96 chrX:19170966-19171086 6.2e-06 32_[+3]_80 chrX:3177462-3177582 6.2e-06 100_[+3]_12 chrX:12757196-12757316 6.2e-06 54_[+3]_58 chr2L:19378736-19378856 9.7e-06 27_[+3]_85 chr2R:8137724-8137844 9.7e-06 43_[+3]_69 chr3R:31677987-31678107 9.7e-06 96_[+3]_16 chr2L:20869032-20869152 9.7e-06 44_[+3]_68 chrX:22443233-22443353 9.7e-06 9_[+3]_103 chr2L:3762840-3762960 1.6e-05 58_[+3]_54 chrX:9643560-9643680 1.6e-05 57_[+3]_55 chr2R:19699773-19699893 1.6e-05 65_[+3]_47 chr3R:25721165-25721285 1.9e-05 72_[+3]_40 chr3R:27056312-27056432 3e-05 68_[+3]_44 chr2R:10857706-10857826 3e-05 75_[+3]_37 chr3L:1199448-1199568 3e-05 56_[+3]_56 chr2L:7693599-7693719 3e-05 71_[+3]_41 chr3R:16068351-16068471 3.4e-05 53_[+3]_59 chr2R:21199554-21199674 4e-05 43_[+3]_69 chr3L:8329150-8329270 4e-05 81_[+3]_31 chr2L:3889932-3890052 4e-05 95_[+3]_17 chr3R:30898712-30898832 4e-05 54_[+3]_58 chr3R:6206471-6206591 5.3e-05 41_[+3]_71 chr3L:11135870-11135990 5.3e-05 70_[+3]_42 chr3L:16291835-16291955 5.3e-05 43_[+3]_69 chr3R:27057959-27058079 5.3e-05 35_[+3]_77 chr3R:6286619-6286739 5.3e-05 30_[+3]_82 chr3L:1839558-1839678 6.4e-05 46_[+3]_66 chr2L:5270332-5270452 6.4e-05 34_[+3]_78 chr3L:20910389-20910509 8.1e-05 74_[+3]_38 chr3R:20286958-20287078 8.1e-05 50_[+3]_62 chr3L:9064323-9064443 0.0001 48_[+3]_64 chr3R:11452185-11452305 0.0001 75_[+3]_37 chr2R:16670193-16670313 0.00011 48_[+3]_64 chr2L:6717143-6717263 0.00011 46_[+3]_66 chr2L:19622-19742 0.00011 44_[+3]_68 chrX:12478521-12478641 0.00012 47_[+3]_65 chr3R:19929150-19929270 0.00012 73_[+3]_39 chr3L:1831877-1831997 0.00013 30_[+3]_82 chr3L:968301-968421 0.00013 20_[+3]_92 chr3L:9203146-9203266 0.00014 63_[+3]_49 chrX:4214517-4214637 0.00016 66_[+3]_46 chr2L:16859787-16859907 0.00021 61_[+3]_51 chr2L:10671680-10671800 0.00023 33_[+3]_79 chr2L:11475105-11475225 0.00024 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGCCCAA width=8 seqs=45 chr2R:19776500-19776620 ( 17) CAGCCCAA 1 chrX:19170966-19171086 ( 33) CAGCCCAA 1 chrX:3177462-3177582 ( 101) CAGCCCAA 1 chrX:12757196-12757316 ( 55) CAGCCCAA 1 chr2L:19378736-19378856 ( 28) CAGCCCGA 1 chr2R:8137724-8137844 ( 44) CAGCCCGA 1 chr3R:31677987-31678107 ( 97) CAGCCCGA 1 chr2L:20869032-20869152 ( 45) CAGCCCGA 1 chrX:22443233-22443353 ( 10) CAGCCCGA 1 chr2L:3762840-3762960 ( 59) CTGCCCAA 1 chrX:9643560-9643680 ( 58) CTGCCCAA 1 chr2R:19699773-19699893 ( 66) CTGCCCAA 1 chr3R:25721165-25721285 ( 73) CTGCCCGA 1 chr3R:27056312-27056432 ( 69) CAGCCTAA 1 chr2R:10857706-10857826 ( 76) CAGCCTAA 1 chr3L:1199448-1199568 ( 57) CAGCCTAA 1 chr2L:7693599-7693719 ( 72) CAGCCTAA 1 chr3R:16068351-16068471 ( 54) CCGCCCAA 1 chr2R:21199554-21199674 ( 44) CAGCCTGA 1 chr3L:8329150-8329270 ( 82) CAGCCTGA 1 chr2L:3889932-3890052 ( 96) CAGCCTGA 1 chr3R:30898712-30898832 ( 55) CAGCCTGA 1 chr3R:6206471-6206591 ( 42) CCGCCCGA 1 chr3L:11135870-11135990 ( 71) AAGCCCAA 1 chr3L:16291835-16291955 ( 44) AAGCCCAA 1 chr3R:27057959-27058079 ( 36) AAGCCCAA 1 chr3R:6286619-6286739 ( 31) AAGCCCAA 1 chr3L:1839558-1839678 ( 47) CAGCCAAA 1 chr2L:5270332-5270452 ( 35) CAGCCAAA 1 chr3L:20910389-20910509 ( 75) CTGCCTAA 1 chr3R:20286958-20287078 ( 51) CTGCCTAA 1 chr3L:9064323-9064443 ( 49) CAGCCGAA 1 chr3R:11452185-11452305 ( 76) CAGCCGAA 1 chr2R:16670193-16670313 ( 49) ATGCCCAA 1 chr2L:6717143-6717263 ( 47) ATGCCCAA 1 chr2L:19622-19742 ( 45) ATGCCCAA 1 chrX:12478521-12478641 ( 48) CTGCCAAA 1 chr3R:19929150-19929270 ( 74) CTGCCAAA 1 chr3L:1831877-1831997 ( 31) CAGCCCCA 1 chr3L:968301-968421 ( 21) ATGCCCGA 1 chr3L:9203146-9203266 ( 64) CTGCCAGA 1 chrX:4214517-4214637 ( 67) GAGCCCAA 1 chr2L:16859787-16859907 ( 62) CCGCCAAA 1 chr2L:10671680-10671800 ( 34) CTGCCCAC 1 chr2L:11475105-11475225 ( 42) TAGCCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.6715 E= 6.5e-007 -84 211 -300 -386 97 -144 -1214 -5 -1214 -1214 248 -1214 -1214 247 -1214 -1214 -1214 247 -1214 -1214 -125 173 -201 -54 112 -302 69 -1214 162 -302 -1214 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 6.5e-007 0.177778 0.777778 0.022222 0.022222 0.622222 0.066667 0.000000 0.311111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.600000 0.044444 0.222222 0.688889 0.022222 0.288889 0.000000 0.977778 0.022222 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCCCAA MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]GCC[CT][AG]A -------------------------------------------------------------------------------- Time 20.09 secs. ******************************************************************************** ******************************************************************************** MOTIF TBDGGCGC MEME-4 width = 8 sites = 47 llr = 385 E-value = 7.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C :4::27:7 probability G 234a81a3 matrix T 833::1:: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 * ***** (11.8 bits) 1.0 * ***** 0.7 ** ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel TCGGGCGC consensus GT G sequence TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19157602-19157722 24 1.97e-06 CTTTGGTTTT TCGGGCGC CTTGGTGATA chr3L:10644799-10644919 61 3.91e-06 CAGCATACTT TGGGGCGC ACTGAAAACT chr2R:19776500-19776620 92 1.40e-05 TTGCATACTT TTGGGCGC CGGTGGAAAT chr3R:6190614-6190734 46 1.40e-05 ATGCATACCT TTGGGCGC CACTATAAGT chr2R:20230897-20231017 59 1.40e-05 TTTTAAGTGC TTGGGCGC GGAAAAATTC chr2R:24299630-24299750 10 1.40e-05 GGGCCATCT TCGGGCGG AGAAAGTGCA chr3L:10678016-10678136 78 1.40e-05 TTATTTCTTT TTGGGCGC TGCTTTTACG chrX:2645660-2645780 63 1.40e-05 TTGCATACTT TCGGGCGG CGCTCGTAAT chr3R:10437132-10437252 68 1.86e-05 AAAGATCACT TGTGGCGC CACCTCTGTG chr2L:16655-16775 101 1.86e-05 TGCGGTGCTT TGTGGCGC GAGTCTACAA chrX:2214209-2214329 44 2.40e-05 TAGCATACTT TCAGGCGC AGGCGTAAAC chr2R:23044708-23044828 27 2.40e-05 ATGCATACTT TCAGGCGC GCATTGAGAT chr3R:16611404-16611524 73 3.14e-05 TGCCTACTTT TGGGCCGC GCTTTAATTT chr2R:17493296-17493416 103 3.34e-05 TCGACTAGTA GCTGGCGC GCTTTAGTTT chr3L:8071809-8071929 5 3.34e-05 CACA GCTGGCGC CCACCACTGC chr3L:16913396-16913516 48 4.82e-05 TGGCATACTT GCGGGCGG AGACTGAGTA chr2R:14427099-14427219 31 4.82e-05 GAGCATACTT TTTGGCGC CGTGAAGAAA chr3R:7485083-7485203 19 5.36e-05 ACTTTCCTGC GGTGGCGC AAAAAAATTC chr3R:17109023-17109143 25 5.36e-05 CATTCTTGTG GGTGGCGC CACTGTGTTC chr3R:12652875-12652995 53 5.36e-05 GGAGTATCTT TTGGGCGG TTTTCCTTAA chr3L:9064323-9064443 89 6.01e-05 ATCCGCCCTG TGGGGGGC ACAGCAGTGC chr2L:19458784-19458904 44 6.01e-05 AGCCTACATT TGGGGGGC ACGACCGATG chr3L:20183854-20183974 22 6.01e-05 AGCGGACAAA GGGGGCGG TAGGCGGAGG chr2R:12409731-12409851 77 6.01e-05 CTGCATACTT TGTGGCGG TAAGTTTTCA chr3L:18957142-18957262 105 6.55e-05 AGCAAAATTT TCGGGTGC CCATAAAG chr3R:6210283-6210403 40 6.55e-05 TTGTGTGCTT TCGGGTGC TTGACTTTCC chr3L:8787370-8787490 77 8.19e-05 GCATTGCGCA TCTGCCGC TGCATACTTT chr3R:25512889-25513009 76 8.19e-05 CTGCTACATT TCAGGCGG AAAACGGTTT chr2R:15291778-15291898 42 8.19e-05 TTGCATACTT TCAGGCGG TTTCTGTAAC chr3R:7886401-7886521 81 1.08e-04 CGCACTTCTG TCAGCCGC TTCTTTCTCC chr2L:3131831-3131951 94 1.18e-04 CGCTGCGGCA GTTGGCGC CTGCCTCGAT chr2R:10417277-10417397 53 1.35e-04 TATACATCCT TTTGGCGG CGGGTTTCTT chr3L:4115889-4116009 58 1.35e-04 CTCGTGACAA TTTGGCGG TTATATTTCA chrX:21061761-21061881 98 1.35e-04 AATGTACATA TGAGCCGC AAGAAAAAGA chr3R:20286958-20287078 101 1.35e-04 AACACTTTTG TGAGCCGC TTCGTCTGAT chr3L:22456056-22456176 1 1.42e-04 . TGTGGGGC CTTAGAGTAG chr2R:21352716-21352836 29 1.52e-04 ccagtgttta gcgggtgc acttagagtg chrX:13134942-13135062 79 1.74e-04 TTGCATAATT TCAGGGGC GAAGTGTTCA chr2R:16670193-16670313 39 2.09e-04 GCAGATAACA TTTGCCGC GAATGCCCAA chr3R:26956096-26956216 55 2.09e-04 CATTATACTT TTAGGCGG AACCCTTTTT chr3R:27071904-27072024 58 2.09e-04 CTATTAAGCT TGTGGTGC ATATATTTAG chr3R:15688543-15688663 57 2.09e-04 CAGCATACTT TTCGGCGC TGCAATTATC chrX:8838095-8838215 28 2.39e-04 AGTTTTTGTT TCAGGTGC TGTGTCCCGA chr3L:16782931-16783051 46 2.39e-04 AGTGTGACCA TGCGGCGG TTTATAGCAA chr2R:22287368-22287488 65 2.39e-04 GGCATATCTC TGGGCGGC AGCATATTAA chr2L:1049521-1049641 75 2.44e-04 TGCATACTTC TCGGCTGC AAAAGTTAAC chr3L:7815829-7815949 104 2.44e-04 GCAAAAAGCT TCGGCTGC AGAGCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19157602-19157722 2e-06 23_[+4]_89 chr3L:10644799-10644919 3.9e-06 60_[+4]_52 chr2R:19776500-19776620 1.4e-05 91_[+4]_21 chr3R:6190614-6190734 1.4e-05 45_[+4]_67 chr2R:20230897-20231017 1.4e-05 58_[+4]_54 chr2R:24299630-24299750 1.4e-05 9_[+4]_103 chr3L:10678016-10678136 1.4e-05 77_[+4]_35 chrX:2645660-2645780 1.4e-05 62_[+4]_50 chr3R:10437132-10437252 1.9e-05 67_[+4]_45 chr2L:16655-16775 1.9e-05 100_[+4]_12 chrX:2214209-2214329 2.4e-05 43_[+4]_69 chr2R:23044708-23044828 2.4e-05 26_[+4]_86 chr3R:16611404-16611524 3.1e-05 72_[+4]_40 chr2R:17493296-17493416 3.3e-05 102_[+4]_10 chr3L:8071809-8071929 3.3e-05 4_[+4]_108 chr3L:16913396-16913516 4.8e-05 47_[+4]_65 chr2R:14427099-14427219 4.8e-05 30_[+4]_82 chr3R:7485083-7485203 5.4e-05 18_[+4]_94 chr3R:17109023-17109143 5.4e-05 24_[+4]_88 chr3R:12652875-12652995 5.4e-05 52_[+4]_60 chr3L:9064323-9064443 6e-05 88_[+4]_24 chr2L:19458784-19458904 6e-05 43_[+4]_69 chr3L:20183854-20183974 6e-05 21_[+4]_91 chr2R:12409731-12409851 6e-05 76_[+4]_36 chr3L:18957142-18957262 6.6e-05 104_[+4]_8 chr3R:6210283-6210403 6.6e-05 39_[+4]_73 chr3L:8787370-8787490 8.2e-05 76_[+4]_36 chr3R:25512889-25513009 8.2e-05 75_[+4]_37 chr2R:15291778-15291898 8.2e-05 41_[+4]_71 chr3R:7886401-7886521 0.00011 80_[+4]_32 chr2L:3131831-3131951 0.00012 93_[+4]_19 chr2R:10417277-10417397 0.00014 52_[+4]_60 chr3L:4115889-4116009 0.00014 57_[+4]_55 chrX:21061761-21061881 0.00014 97_[+4]_15 chr3R:20286958-20287078 0.00014 100_[+4]_12 chr3L:22456056-22456176 0.00014 [+4]_112 chr2R:21352716-21352836 0.00015 28_[+4]_84 chrX:13134942-13135062 0.00017 78_[+4]_34 chr2R:16670193-16670313 0.00021 38_[+4]_74 chr3R:26956096-26956216 0.00021 54_[+4]_58 chr3R:27071904-27072024 0.00021 57_[+4]_55 chr3R:15688543-15688663 0.00021 56_[+4]_56 chrX:8838095-8838215 0.00024 27_[+4]_85 chr3L:16782931-16783051 0.00024 45_[+4]_67 chr2R:22287368-22287488 0.00024 64_[+4]_48 chr2L:1049521-1049641 0.00024 74_[+4]_38 chr3L:7815829-7815949 0.00024 103_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBDGGCGC width=8 seqs=47 chrX:19157602-19157722 ( 24) TCGGGCGC 1 chr3L:10644799-10644919 ( 61) TGGGGCGC 1 chr2R:19776500-19776620 ( 92) TTGGGCGC 1 chr3R:6190614-6190734 ( 46) TTGGGCGC 1 chr2R:20230897-20231017 ( 59) TTGGGCGC 1 chr2R:24299630-24299750 ( 10) TCGGGCGG 1 chr3L:10678016-10678136 ( 78) TTGGGCGC 1 chrX:2645660-2645780 ( 63) TCGGGCGG 1 chr3R:10437132-10437252 ( 68) TGTGGCGC 1 chr2L:16655-16775 ( 101) TGTGGCGC 1 chrX:2214209-2214329 ( 44) TCAGGCGC 1 chr2R:23044708-23044828 ( 27) TCAGGCGC 1 chr3R:16611404-16611524 ( 73) TGGGCCGC 1 chr2R:17493296-17493416 ( 103) GCTGGCGC 1 chr3L:8071809-8071929 ( 5) GCTGGCGC 1 chr3L:16913396-16913516 ( 48) GCGGGCGG 1 chr2R:14427099-14427219 ( 31) TTTGGCGC 1 chr3R:7485083-7485203 ( 19) GGTGGCGC 1 chr3R:17109023-17109143 ( 25) GGTGGCGC 1 chr3R:12652875-12652995 ( 53) TTGGGCGG 1 chr3L:9064323-9064443 ( 89) TGGGGGGC 1 chr2L:19458784-19458904 ( 44) TGGGGGGC 1 chr3L:20183854-20183974 ( 22) GGGGGCGG 1 chr2R:12409731-12409851 ( 77) TGTGGCGG 1 chr3L:18957142-18957262 ( 105) TCGGGTGC 1 chr3R:6210283-6210403 ( 40) TCGGGTGC 1 chr3L:8787370-8787490 ( 77) TCTGCCGC 1 chr3R:25512889-25513009 ( 76) TCAGGCGG 1 chr2R:15291778-15291898 ( 42) TCAGGCGG 1 chr3R:7886401-7886521 ( 81) TCAGCCGC 1 chr2L:3131831-3131951 ( 94) GTTGGCGC 1 chr2R:10417277-10417397 ( 53) TTTGGCGG 1 chr3L:4115889-4116009 ( 58) TTTGGCGG 1 chrX:21061761-21061881 ( 98) TGAGCCGC 1 chr3R:20286958-20287078 ( 101) TGAGCCGC 1 chr3L:22456056-22456176 ( 1) TGTGGGGC 1 chr2R:21352716-21352836 ( 29) GCGGGTGC 1 chrX:13134942-13135062 ( 79) TCAGGGGC 1 chr2R:16670193-16670313 ( 39) TTTGCCGC 1 chr3R:26956096-26956216 ( 55) TTAGGCGG 1 chr3R:27071904-27072024 ( 58) TGTGGTGC 1 chr3R:15688543-15688663 ( 57) TTCGGCGC 1 chrX:8838095-8838215 ( 28) TCAGGTGC 1 chr3L:16782931-16783051 ( 46) TGCGGCGG 1 chr2R:22287368-22287488 ( 65) TGGGCGGC 1 chr2L:1049521-1049641 ( 75) TCGGCTGC 1 chr3L:7815829-7815949 ( 104) TCGGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 7.2e-002 -1220 -1220 -7 136 -1220 116 93 -34 -58 -208 125 -2 -1220 -1220 248 -1220 -1220 8 218 -1220 -1220 204 -75 -112 -1220 -1220 248 -1220 -1220 204 52 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 7.2e-002 0.000000 0.000000 0.170213 0.829787 0.000000 0.404255 0.340426 0.255319 0.212766 0.042553 0.425532 0.319149 0.000000 0.000000 1.000000 0.000000 0.000000 0.191489 0.808511 0.000000 0.000000 0.744681 0.106383 0.148936 0.000000 0.000000 1.000000 0.000000 0.000000 0.744681 0.255319 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBDGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- T[CGT][GTA]GGCG[CG] -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF KCGCCGCC MEME-5 width = 8 sites = 15 llr = 149 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::1::1 pos.-specific C 1a:a7:99 probability G 4:a::91: matrix T 5:::211: bits 2.5 *** 2.2 *** 2.0 *** 1.7 *** *** Relative 1.5 *** *** Entropy 1.2 *** *** (14.3 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCCGCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8787370-8787490 45 1.11e-06 ATACTCGCGA GCGCCGCC AATACATTCA chr3L:8071809-8071929 57 1.11e-06 TGACAAAACA GCGCCGCC TGGAAATAAA chr3L:20183854-20183974 68 3.12e-06 AGCCGCCCAC TCGCCGCC TTTGTGTTTC chrX:4214517-4214637 9 4.25e-06 TCCCAAAA CCGCCGCC CGTGAGTATG chr3R:7886401-7886521 56 6.24e-06 TAGCCGCTTC GCGCTGCC TGCATATCGC chr2L:14184342-14184462 62 1.18e-05 GCAATTATAC GCGCAGCC TGGAAGTAGG chr3L:13900764-13900884 61 1.18e-05 TTTTTTTGGT TCGCTGCC ATCATTTTTG chrX:18772148-18772268 43 1.18e-05 GCTTTAAATT GCGCAGCC AAGTATGCTA chr3R:20286958-20287078 26 1.18e-05 GTATTTGCAG TCGCTGCC ACCGAGATGT chr3L:16291835-16291955 73 2.96e-05 GTCTTGTGCA TCGCCTCC AAGTCGCCCA chr2R:23671835-23671955 91 2.96e-05 GGAATTTTCC TCGCCTCC TAACGCTTTT chr3R:5846845-5846965 60 2.96e-05 AAGATCGAAT TCGCCGCA AAACTGTATG chrX:11430244-11430364 95 3.15e-05 TTCTCCTGAG TCGCCGGC ACGTGCTGAT chr3R:6149777-6149897 37 3.35e-05 TTAATTTTAA GCGCCGTC AAACATTCAA chr3L:18949261-18949381 8 4.31e-05 TGAGCCA CCGCCGCA GAGTCTGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8787370-8787490 1.1e-06 44_[+5]_68 chr3L:8071809-8071929 1.1e-06 56_[+5]_56 chr3L:20183854-20183974 3.1e-06 67_[+5]_45 chrX:4214517-4214637 4.3e-06 8_[+5]_104 chr3R:7886401-7886521 6.2e-06 55_[+5]_57 chr2L:14184342-14184462 1.2e-05 61_[+5]_51 chr3L:13900764-13900884 1.2e-05 60_[+5]_52 chrX:18772148-18772268 1.2e-05 42_[+5]_70 chr3R:20286958-20287078 1.2e-05 25_[+5]_87 chr3L:16291835-16291955 3e-05 72_[+5]_40 chr2R:23671835-23671955 3e-05 90_[+5]_22 chr3R:5846845-5846965 3e-05 59_[+5]_53 chrX:11430244-11430364 3.2e-05 94_[+5]_18 chr3R:6149777-6149897 3.4e-05 36_[+5]_76 chr3L:18949261-18949381 4.3e-05 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCGCCGCC width=8 seqs=15 chr3L:8787370-8787490 ( 45) GCGCCGCC 1 chr3L:8071809-8071929 ( 57) GCGCCGCC 1 chr3L:20183854-20183974 ( 68) TCGCCGCC 1 chrX:4214517-4214637 ( 9) CCGCCGCC 1 chr3R:7886401-7886521 ( 56) GCGCTGCC 1 chr2L:14184342-14184462 ( 62) GCGCAGCC 1 chr3L:13900764-13900884 ( 61) TCGCTGCC 1 chrX:18772148-18772268 ( 43) GCGCAGCC 1 chr3R:20286958-20287078 ( 26) TCGCTGCC 1 chr3L:16291835-16291955 ( 73) TCGCCTCC 1 chr2R:23671835-23671955 ( 91) TCGCCTCC 1 chr3R:5846845-5846965 ( 60) TCGCCGCA 1 chrX:11430244-11430364 ( 95) TCGCCGGC 1 chr3R:6149777-6149897 ( 37) GCGCCGTC 1 chr3L:18949261-18949381 ( 8) CCGCCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 1.5e+003 -1055 -44 116 53 -1055 247 -1055 -1055 -1055 -1055 248 -1055 -1055 247 -1055 -1055 -125 188 -1055 -69 -1055 -1055 228 -127 -1055 226 -142 -227 -125 226 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.5e+003 0.000000 0.133333 0.400000 0.466667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.666667 0.000000 0.200000 0.000000 0.000000 0.866667 0.133333 0.000000 0.866667 0.066667 0.066667 0.133333 0.866667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- [TG]CGC[CT]GCC -------------------------------------------------------------------------------- Time 31.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27082887-27083007 8.98e-01 120 chr2L:7063186-7063306 6.56e-01 120 chr3R:12363672-12363792 1.46e-02 77_[+2(1.95e-05)]_35 chr2L:11012163-11012283 5.03e-02 41_[+1(2.00e-05)]_71 chr2R:6089093-6089213 5.59e-02 120 chr2R:9183213-9183333 4.40e-02 17_[+2(1.95e-05)]_95 chrX:17284859-17284979 3.64e-02 80_[+1(3.14e-05)]_32 chr3R:16310409-16310529 8.25e-03 19_[+1(7.77e-05)]_93 chr2R:19699773-19699893 5.49e-03 65_[+3(1.59e-05)]_[+2(7.18e-05)]_39 chr3R:19929150-19929270 1.34e-02 21_[+2(9.70e-05)]_91 chr2R:12883198-12883318 6.04e-02 57_[+1(2.00e-05)]_55 chr3L:11104493-11104613 3.17e-01 120 chr3L:22733819-22733939 1.08e-01 64_[+1(2.00e-05)]_48 chrX:9889852-9889972 8.29e-04 4_[+2(1.95e-05)]_108 chr2R:13580599-13580719 9.28e-01 120 chr2L:7693599-7693719 1.17e-02 23_[+2(7.18e-05)]_40_[+3(3.05e-05)]_\ 41 chr3R:6239090-6239210 2.23e-01 120 chr3L:1199448-1199568 3.06e-02 56_[+3(3.05e-05)]_56 chrX:12757196-12757316 2.46e-04 54_[+3(6.18e-06)]_[+2(1.95e-05)]_50 chr2L:138264-138384 1.28e-01 120 chr2L:19622-19742 1.17e-03 52_[+2(1.95e-05)]_60 chrX:10841032-10841152 1.67e-01 120 chrX:4700587-4700707 9.94e-01 120 chr2L:14197369-14197489 2.29e-02 59_[+1(2.00e-05)]_53 chr3L:4426740-4426860 4.24e-01 120 chr3R:17403790-17403910 2.69e-02 120 chr3L:1191691-1191811 2.54e-02 10_[+2(1.95e-05)]_102 chr2L:8974625-8974745 7.93e-02 41_[+2(1.95e-05)]_71 chr2R:17114891-17115011 6.15e-01 120 chr3L:3315423-3315543 2.60e-02 64_[+2(1.95e-05)]_48 chr3R:28302272-28302392 9.94e-01 120 chr2R:23421236-23421356 1.06e-02 42_[+2(1.95e-05)]_70 chrX:11555085-11555205 5.59e-02 67_[+2(1.95e-05)]_45 chr2R:12409731-12409851 4.83e-03 68_[+1(2.00e-05)]_[+4(6.01e-05)]_36 chr3R:22531973-22532093 5.74e-01 120 chr3R:18390175-18390295 4.23e-02 34_[+2(9.70e-05)]_78 chr2L:4903958-4904078 2.06e-01 120 chr3R:8127882-8128002 1.33e-01 69_[+1(2.00e-05)]_43 chr3R:22072695-22072815 1.18e-01 69_[+2(1.95e-05)]_43 chr4:490266-490386 9.11e-03 120 chr3R:6124458-6124578 7.28e-02 120 chr3R:6388691-6388811 6.13e-02 71_[+1(2.00e-05)]_41 chr2R:14534892-14535012 1.86e-04 102_[+1(3.14e-05)]_10 chr2L:5804168-5804288 1.57e-02 67_[+2(1.95e-05)]_45 chr3L:20183854-20183974 1.74e-05 21_[+4(6.01e-05)]_38_[+5(3.12e-06)]_\ 45 chr2L:18513508-18513628 4.58e-02 26_[+2(1.95e-05)]_86 chr2L:9776059-9776179 4.43e-01 120 chr2R:25189573-25189693 5.91e-01 120 chrX:2679547-2679667 3.33e-02 120 chr3L:5537856-5537976 9.61e-01 120 chr2L:3633995-3634115 4.92e-03 77_[+1(2.00e-05)]_35 chr3L:19008967-19009087 1.00e+00 120 chr3R:20286958-20287078 2.65e-06 25_[+5(1.18e-05)]_17_[+3(8.12e-05)]_\ 24_[+2(1.95e-05)]_30 chrX:10489896-10490016 3.54e-02 120 chr2L:5270332-5270452 1.24e-02 34_[+3(6.39e-05)]_[+2(3.02e-05)]_70 chr3R:6210283-6210403 6.40e-03 39_[+4(6.55e-05)]_55_[+1(4.26e-05)]_\ 10 chrX:21061761-21061881 1.13e-03 34_[+2(3.02e-05)]_78 chrX:22443233-22443353 1.96e-02 9_[+3(9.66e-06)]_103 chr2R:5986933-5987053 1.51e-03 38_[+1(2.00e-05)]_74 chrX:18772148-18772268 8.79e-05 5_[+2(1.95e-05)]_29_[+5(1.18e-05)]_\ [+2(1.95e-05)]_62 chrX:9874146-9874266 2.04e-01 120 chr3L:15809964-15810084 1.09e-02 66_[+2(7.18e-05)]_46 chr3R:12652875-12652995 2.08e-02 52_[+4(5.36e-05)]_60 chr3L:18957142-18957262 6.18e-04 20_[+2(3.02e-05)]_76_[+4(6.55e-05)]_\ 8 chrX:265815-265935 2.35e-02 105_[+2(3.02e-05)]_7 chr2L:20341327-20341447 4.45e-03 100_[+1(2.00e-05)]_12 chr3R:30898712-30898832 7.49e-03 54_[+3(4.02e-05)]_58 chr3L:21262597-21262717 3.61e-03 63_[+1(2.00e-05)]_49 chr3R:10120188-10120308 4.43e-01 120 chr2R:13536943-13537063 5.17e-01 120 chr3L:8071809-8071929 9.44e-07 4_[+4(3.34e-05)]_44_[+5(1.11e-06)]_\ 56 chr3R:20305979-20306099 3.85e-01 120 chr3L:13900764-13900884 1.14e-05 17_[+2(1.95e-05)]_35_[+5(1.18e-05)]_\ 52 chr3L:17407242-17407362 5.38e-01 120 chrX:12478521-12478641 1.03e-03 120 chr3L:7815829-7815949 8.56e-03 75_[+2(1.95e-05)]_37 chrX:1169576-1169696 2.27e-03 45_[+2(1.95e-05)]_67 chr3R:30486114-30486234 1.13e-03 52_[+1(2.00e-05)]_60 chr3L:15808783-15808903 5.24e-03 96_[+1(2.00e-05)]_16 chrX:2645660-2645780 1.71e-03 54_[+1(2.00e-05)]_[+4(1.40e-05)]_50 chr2R:23753401-23753521 8.04e-02 55_[+1(2.00e-05)]_57 chr3L:21930387-21930507 1.72e-02 40_[+1(2.00e-05)]_72 chr2L:14184342-14184462 1.32e-03 61_[+5(1.18e-05)]_3_[+2(3.02e-05)]_\ 40 chr2R:13132512-13132632 6.30e-04 32_[+2(1.95e-05)]_80 chr3L:3457040-3457160 4.16e-03 55_[+2(1.95e-05)]_57 chr3R:6458996-6459116 8.11e-02 120 chr3L:1831877-1831997 1.53e-03 39_[+2(1.95e-05)]_73 chr3L:1850656-1850776 7.38e-03 98_[+1(7.77e-05)]_14 chr2L:15613675-15613795 1.93e-02 86_[+1(2.00e-05)]_26 chr3L:10644799-10644919 2.71e-05 52_[+1(2.00e-05)]_[+4(3.91e-06)]_52 chr2R:24976159-24976279 7.81e-01 120 chr3R:16620006-16620126 6.44e-03 59_[+2(4.12e-05)]_53 chr2R:7317703-7317823 3.18e-04 19_[+2(1.95e-05)]_40_[+1(2.00e-05)]_\ 45 chr2L:19458784-19458904 1.70e-02 43_[+4(6.01e-05)]_69 chr2R:25038564-25038684 1.91e-02 41_[+2(1.95e-05)]_71 chr3L:10678016-10678136 2.01e-02 77_[+4(1.40e-05)]_35 chr2R:22287368-22287488 6.09e-02 120 chr2R:15291778-15291898 1.89e-03 33_[+1(2.00e-05)]_[+4(8.19e-05)]_71 chr2L:10671680-10671800 5.24e-03 47_[+2(1.95e-05)]_65 chr2L:14619046-14619166 9.11e-01 120 chr3R:17109023-17109143 3.54e-03 24_[+4(5.36e-05)]_88 chr3R:26985478-26985598 1.03e-02 47_[+1(4.26e-05)]_65 chr2L:11475105-11475225 9.10e-03 105_[+1(2.00e-05)]_7 chr3R:11452185-11452305 1.38e-03 75_[+3(9.97e-05)]_[+2(1.95e-05)]_29 chr2R:24299630-24299750 2.64e-03 9_[+4(1.40e-05)]_103 chr3L:19646442-19646562 1.19e-02 38_[+1(3.14e-05)]_74 chr3R:19220145-19220265 4.00e-03 57_[+2(1.95e-05)]_55 chr2R:18553847-18553967 8.91e-01 120 chr3R:16611404-16611524 4.51e-05 63_[+1(3.14e-05)]_1_[+4(3.14e-05)]_\ 40 chrX:3177462-3177582 1.06e-03 100_[+3(6.18e-06)]_12 chr2R:17493085-17493205 9.78e-02 120 chr3R:25721165-25721285 7.67e-04 72_[+3(1.95e-05)]_[+2(3.02e-05)]_32 chr2R:18807763-18807883 4.46e-03 73_[+1(2.00e-05)]_39 chr3L:9203146-9203266 1.94e-03 27_[+2(1.95e-05)]_36_[+2(3.02e-05)]_\ 41 chr3L:1323895-1324015 8.59e-02 120 chr3R:28668970-28669090 7.81e-01 120 chr3L:3076697-3076817 2.28e-03 65_[+2(1.95e-05)]_47 chr3L:16782931-16783051 2.35e-01 120 chrX:19235967-19236087 3.99e-02 120 chr3R:24054275-24054395 3.96e-01 120 chr3L:4115889-4116009 3.92e-02 120 chr3L:15516550-15516670 3.72e-02 22_[+1(2.00e-05)]_90 chr3R:6286619-6286739 1.53e-02 30_[+3(5.30e-05)]_82 chr3R:4969766-4969886 1.44e-02 80_[+1(2.00e-05)]_32 chr3R:22779949-22780069 3.35e-01 120 chr2L:21626513-21626633 5.12e-01 120 chrX:11434105-11434225 3.37e-01 120 chr3L:3316552-3316672 1.07e-03 56_[+1(7.77e-05)]_34_[+2(1.95e-05)]_\ 14 chr2L:16655-16775 2.22e-02 100_[+4(1.86e-05)]_12 chr3L:968301-968421 1.28e-02 28_[+2(4.12e-05)]_33_[+2(3.02e-05)]_\ 43 chr3R:30844930-30845050 1.98e-02 63_[+2(1.95e-05)]_4_[+2(7.18e-05)]_\ 37 chrX:19157602-19157722 9.83e-06 23_[+4(1.97e-06)]_15_[+1(2.00e-05)]_\ 66 chr3R:27057959-27058079 1.62e-03 35_[+3(5.30e-05)]_49_[+1(3.14e-05)]_\ 20 chr3L:21359948-21360068 3.63e-02 28_[+1(2.00e-05)]_46_[+1(3.14e-05)]_\ 30 chr3R:15688543-15688663 3.24e-04 48_[+1(2.00e-05)]_4_[+5(5.33e-05)]_\ 52 chr2R:24757133-24757253 1.47e-03 91_[+2(1.95e-05)]_21 chrX:5766882-5767002 7.62e-04 88_[+1(2.00e-05)]_24 chr3L:13860104-13860224 2.05e-02 120 chr2L:6717143-6717263 1.11e-03 54_[+2(1.95e-05)]_58 chr3L:9064323-9064443 1.14e-04 48_[+3(9.97e-05)]_[+2(3.02e-05)]_24_\ [+4(6.01e-05)]_24 chr2R:8435075-8435195 5.39e-02 60_[+2(7.18e-05)]_52 chr3R:10437132-10437252 4.94e-05 37_[+2(1.95e-05)]_22_[+4(1.86e-05)]_\ 45 chr3L:28091273-28091393 8.86e-02 38_[+2(1.95e-05)]_74 chr2R:14427099-14427219 6.90e-06 22_[+1(2.00e-05)]_[+4(4.82e-05)]_47_\ [+1(2.00e-05)]_27 chrX:1063170-1063290 2.19e-04 105_[+1(3.14e-05)]_7 chr3R:16068351-16068471 1.86e-04 53_[+3(3.40e-05)]_[+2(1.95e-05)]_51 chr2R:21352716-21352836 1.66e-03 110_[+2(4.12e-05)]_2 chr4:415587-415707 1.72e-04 79_[+1(2.00e-05)]_33 chr3L:3766821-3766941 8.07e-03 62_[+1(2.00e-05)]_50 chr3L:4219424-4219544 6.18e-02 37_[+2(1.95e-05)]_75 chr2L:20869032-20869152 4.30e-03 44_[+3(9.66e-06)]_68 chr3R:27071904-27072024 8.39e-03 32_[+1(2.00e-05)]_80 chr3R:5846845-5846965 1.13e-04 20_[+2(1.95e-05)]_31_[+5(2.96e-05)]_\ 53 chr2L:21087802-21087922 1.51e-01 120 chr3R:19638815-19638935 2.03e-02 32_[+2(9.70e-05)]_80 chrX:16889127-16889247 9.37e-03 48_[+2(1.95e-05)]_64 chr2L:3889932-3890052 1.72e-01 95_[+3(4.02e-05)]_17 chr2R:20230897-20231017 1.12e-03 58_[+4(1.40e-05)]_21_[+2(1.95e-05)]_\ 25 chr3R:26956096-26956216 3.96e-01 120 chr3L:12008086-12008206 1.71e-02 33_[+2(7.18e-05)]_79 chrX:1963239-1963359 1.42e-03 52_[+1(2.00e-05)]_60 chr3R:31677987-31678107 6.26e-03 96_[+3(9.66e-06)]_[+2(7.18e-05)]_8 chr2L:15916064-15916184 1.70e-01 120 chr3L:16741766-16741886 6.77e-01 120 chr3R:6149777-6149897 2.01e-04 36_[+5(3.35e-05)]_54_[+1(2.00e-05)]_\ 14 chr2R:23671835-23671955 4.05e-06 25_[+2(1.95e-05)]_1_[+5(9.15e-05)]_\ 25_[+1(2.00e-05)]_15_[+5(2.96e-05)]_22 chr3L:1913620-1913740 1.47e-02 96_[+1(2.00e-05)]_16 chr3L:16291835-16291955 2.93e-05 43_[+3(5.30e-05)]_3_[+4(9.28e-05)]_\ 10_[+5(2.96e-05)]_40 chr3R:7886401-7886521 7.37e-04 55_[+5(6.24e-06)]_57 chr2L:3131831-3131951 7.27e-05 70_[+1(2.00e-05)]_19_[+5(9.15e-05)]_\ 15 chr3L:17898706-17898826 2.25e-01 120 chrX:9643560-9643680 4.51e-04 57_[+3(1.59e-05)]_[+2(1.95e-05)]_47 chr3L:11135870-11135990 7.74e-03 70_[+3(5.30e-05)]_42 chr3L:17891536-17891656 4.09e-02 120 chrX:13134942-13135062 6.83e-04 120 chr2L:21085757-21085877 3.78e-02 28_[+2(3.02e-05)]_84 chr3R:21346784-21346904 6.35e-01 120 chrX:19310279-19310399 2.53e-01 120 chr3L:17549337-17549457 1.79e-02 120 chr2R:10417277-10417397 3.58e-03 13_[+1(2.00e-05)]_99 chr2L:1049521-1049641 4.00e-03 65_[+1(2.00e-05)]_47 chr3R:11665672-11665792 4.76e-02 64_[+1(4.26e-05)]_48 chr3L:4464766-4464886 2.67e-02 57_[+1(2.00e-05)]_55 chr2R:9056123-9056243 1.50e-01 47_[+2(1.95e-05)]_65 chr3L:2485910-2486030 3.36e-02 83_[+1(2.00e-05)]_29 chr2R:12565110-12565230 3.41e-02 44_[+1(2.00e-05)]_68 chrX:149852-149972 6.47e-01 120 chr2L:19399446-19399566 4.39e-02 81_[+2(9.70e-05)]_31 chr3L:3267362-3267482 1.05e-01 120 chr3L:6129778-6129898 9.80e-03 82_[+2(7.18e-05)]_30 chr2R:10857706-10857826 1.49e-04 62_[+1(2.00e-05)]_5_[+3(3.05e-05)]_\ 37 chr3R:12383911-12384031 1.83e-01 120 chr2L:8973115-8973235 1.58e-03 [+2(1.95e-05)]_54_[+1(2.00e-05)]_50 chr3R:24015665-24015785 1.01e-01 120 chr3R:27056312-27056432 7.62e-05 65_[+5(2.04e-05)]_3_[+2(7.78e-05)]_\ 36 chr3L:7143408-7143528 3.44e-03 17_[+1(7.77e-05)]_45_[+2(1.95e-05)]_\ 42 chr2R:8137724-8137844 2.18e-03 43_[+3(9.66e-06)]_69 chrX:4214517-4214637 4.12e-05 8_[+5(4.25e-06)]_3_[+2(4.12e-05)]_\ 93 chr3L:18949261-18949381 2.94e-04 7_[+5(4.31e-05)]_105 chrX:8838095-8838215 2.86e-01 120 chr3L:1839558-1839678 9.58e-02 46_[+3(6.39e-05)]_66 chr3R:16984324-16984444 1.86e-01 73_[+2(1.95e-05)]_39 chr2R:23044708-23044828 2.48e-04 18_[+1(2.00e-05)]_[+4(2.40e-05)]_86 chr3L:16913396-16913516 1.26e-03 39_[+1(2.00e-05)]_[+4(4.82e-05)]_65 chrX:6659997-6660117 9.87e-03 87_[+1(4.26e-05)]_25 chrX:2214209-2214329 1.25e-04 35_[+1(2.00e-05)]_[+4(2.40e-05)]_69 chr3L:20910389-20910509 2.12e-03 74_[+3(8.12e-05)]_[+2(1.95e-05)]_30 chr3R:25512889-25513009 7.12e-03 27_[+1(2.00e-05)]_40_[+4(8.19e-05)]_\ 37 chrX:19170966-19171086 1.19e-03 32_[+3(6.18e-06)]_19_[+1(3.14e-05)]_\ 53 chr3R:19915773-19915893 2.82e-02 76_[+2(1.95e-05)]_36 chr2L:2800638-2800758 3.02e-02 61_[+1(3.14e-05)]_51 chrX:1315517-1315637 8.30e-06 19_[+4(9.28e-05)]_20_[+1(2.00e-05)]_\ 65 chr3R:6190614-6190734 6.52e-05 1_[+5(8.76e-05)]_36_[+4(1.40e-05)]_\ 67 chr2R:11264014-11264134 6.78e-02 120 chr3R:30248766-30248886 5.15e-02 120 chr3L:1883457-1883577 4.07e-02 106_[+1(2.00e-05)]_6 chr2R:17493296-17493416 2.04e-02 102_[+4(3.34e-05)]_10 chr3L:19569150-19569270 1.84e-01 50_[+1(2.00e-05)]_62 chrX:1523441-1523561 4.56e-03 57_[+2(1.95e-05)]_55 chr2L:303936-304056 9.68e-01 120 chr2L:16859787-16859907 1.42e-02 120 chr3R:5268631-5268751 2.56e-02 120 chrX:19640765-19640885 1.34e-03 74_[+1(2.00e-05)]_38 chr3L:22456056-22456176 3.02e-02 12_[+2(7.78e-05)]_100 chr3R:6206471-6206591 3.19e-03 41_[+3(5.30e-05)]_[+2(1.95e-05)]_63 chr2R:14766418-14766538 1.41e-02 7_[+1(3.14e-05)]_105 chr2L:18576390-18576510 7.06e-01 120 chr2L:3294757-3294877 2.95e-02 57_[+1(2.00e-05)]_55 chr3L:8329150-8329270 4.06e-03 81_[+3(4.02e-05)]_31 chr3L:5356722-5356842 1.63e-02 67_[+2(7.18e-05)]_45 chr3R:4712219-4712339 1.61e-03 82_[+2(1.95e-05)]_30 chr3L:12735846-12735966 3.36e-01 120 chr3R:14823092-14823212 1.96e-01 1_[+1(7.77e-05)]_111 chr2R:19776500-19776620 1.67e-06 16_[+3(6.18e-06)]_59_[+1(2.00e-05)]_\ [+4(1.40e-05)]_21 chr2R:21199554-21199674 3.38e-03 43_[+3(4.02e-05)]_[+2(3.02e-05)]_50_\ [+2(1.95e-05)]_3 chrX:18520537-18520657 8.75e-03 13_[+2(1.95e-05)]_99 chr3L:7756964-7757084 1.14e-02 47_[+5(8.76e-05)]_65 chr3L:8787370-8787490 6.98e-06 32_[+1(4.26e-05)]_4_[+5(1.11e-06)]_\ 24_[+4(8.19e-05)]_1_[+1(2.00e-05)]_27 chr3R:18394415-18394535 4.47e-01 120 chrX:11430244-11430364 1.69e-04 48_[+1(7.77e-05)]_38_[+5(3.15e-05)]_\ 18 chr3R:6683804-6683924 2.32e-02 68_[+1(2.00e-05)]_44 chr2L:4812390-4812510 6.32e-02 36_[+1(2.00e-05)]_76 chr3L:3931065-3931185 9.45e-03 29_[+1(4.26e-05)]_83 chr2R:16670193-16670313 3.68e-04 56_[+2(3.02e-05)]_56 chr2R:11688627-11688747 6.86e-01 120 chr3R:7485083-7485203 7.32e-04 4_[+1(2.00e-05)]_6_[+4(5.36e-05)]_\ 94 chr2R:7759816-7759936 1.45e-01 56_[+2(9.70e-05)]_56 chr2L:3762840-3762960 1.71e-03 58_[+3(1.59e-05)]_[+2(1.95e-05)]_46 chr2L:16858-16978 9.38e-01 120 chr2L:19378736-19378856 4.59e-04 27_[+3(9.66e-06)]_[+2(1.95e-05)]_42_\ [+3(8.73e-05)]_27 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************