******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/mirr.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:22249564-22249684 1.0000 120 chr3L:12695039-12695159 1.0000 120 chr3R:25260787-25260907 1.0000 120 chrX:10841347-10841467 1.0000 120 chr3R:17008754-17008874 1.0000 120 chr2L:18605678-18605798 1.0000 120 chr2L:21189511-21189631 1.0000 120 chr3R:30390455-30390575 1.0000 120 chr3R:16173655-16173775 1.0000 120 chr3L:12704449-12704569 1.0000 120 chrX:13313250-13313370 1.0000 120 chr2R:9135998-9136118 1.0000 120 chr2R:22245406-22245526 1.0000 120 chr3L:12679434-12679554 1.0000 120 chr2L:8703083-8703203 1.0000 120 chr3R:23711359-23711479 1.0000 120 chr3L:12674644-12674764 1.0000 120 chr2L:1707098-1707218 1.0000 120 chr3L:12695840-12695960 1.0000 120 chr3L:6234200-6234320 1.0000 120 chr2L:5790908-5791028 1.0000 120 chr3L:12688881-12689001 1.0000 120 chr2L:7680455-7680575 1.0000 120 chrX:17581100-17581220 1.0000 120 chr3L:12705859-12705979 1.0000 120 chr3L:11183150-11183270 1.0000 120 chrX:13308131-13308251 1.0000 120 chr3R:4446584-4446704 1.0000 120 chr3R:10055116-10055236 1.0000 120 chr2L:16799647-16799767 1.0000 120 chr2R:9744682-9744802 1.0000 120 chr2L:12708699-12708819 1.0000 120 chr2R:11790802-11790922 1.0000 120 chr3L:12690454-12690574 1.0000 120 chr2R:24071313-24071433 1.0000 120 chr3L:15692507-15692627 1.0000 120 chr3L:8948279-8948399 1.0000 120 chr2L:16882957-16883077 1.0000 120 chr3R:12211712-12211832 1.0000 120 chr2L:2472854-2472974 1.0000 120 chr2R:17711865-17711985 1.0000 120 chr3R:24353606-24353726 1.0000 120 chr3L:11071167-11071287 1.0000 120 chr3L:1969129-1969249 1.0000 120 chrX:2787969-2788089 1.0000 120 chr2R:9609505-9609625 1.0000 120 chr2R:19690620-19690740 1.0000 120 chr3L:7944216-7944336 1.0000 120 chr3L:20210022-20210142 1.0000 120 chr3R:11177741-11177861 1.0000 120 chr2R:17086538-17086658 1.0000 120 chr3R:9892309-9892429 1.0000 120 chr3L:8707226-8707346 1.0000 120 chr2L:14656278-14656398 1.0000 120 chr2R:13290108-13290228 1.0000 120 chr3R:12405285-12405405 1.0000 120 chrX:503625-503745 1.0000 120 chr3R:19619952-19620072 1.0000 120 chrX:6064670-6064790 1.0000 120 chr3R:22412327-22412447 1.0000 120 chr2L:18985572-18985692 1.0000 120 chr2L:3299280-3299400 1.0000 120 chr2L:3307831-3307951 1.0000 120 chr3R:18783318-18783438 1.0000 120 chr2L:21109841-21109961 1.0000 120 chr2L:20397151-20397271 1.0000 120 chr2R:6031007-6031127 1.0000 120 chr3R:16275507-16275627 1.0000 120 chr2L:6089758-6089878 1.0000 120 chr3R:23177602-23177722 1.0000 120 chr3R:26465259-26465379 1.0000 120 chr3L:12902645-12902765 1.0000 120 chr3L:15978249-15978369 1.0000 120 chr3R:15694511-15694631 1.0000 120 chr2L:19097494-19097614 1.0000 120 chr2R:23661236-23661356 1.0000 120 chrX:6259850-6259970 1.0000 120 chr2R:11598816-11598936 1.0000 120 chr2L:19098890-19099010 1.0000 120 chr3L:12686249-12686369 1.0000 120 chr2R:14187254-14187374 1.0000 120 chr3L:18015697-18015817 1.0000 120 chr3L:1653879-1653999 1.0000 120 chrX:8884607-8884727 1.0000 120 chr2L:497796-497916 1.0000 120 chr2L:12720649-12720769 1.0000 120 chr2R:15323221-15323341 1.0000 120 chr2R:22281954-22282074 1.0000 120 chr3R:10566546-10566666 1.0000 120 chr3L:19014920-19015040 1.0000 120 chr3L:9500354-9500474 1.0000 120 chr2L:7216428-7216548 1.0000 120 chr3R:23097531-23097651 1.0000 120 chr2L:4339899-4340019 1.0000 120 chr2R:18018106-18018226 1.0000 120 chr2L:16255337-16255457 1.0000 120 chr2R:9300049-9300169 1.0000 120 chr2L:10701643-10701763 1.0000 120 chr2R:8912361-8912481 1.0000 120 chr2R:13296967-13297087 1.0000 120 chr3R:14695812-14695932 1.0000 120 chr3L:338267-338387 1.0000 120 chr2L:14498799-14498919 1.0000 120 chr2R:12263365-12263485 1.0000 120 chr2L:790088-790208 1.0000 120 chr2R:24140256-24140376 1.0000 120 chr3R:5836675-5836795 1.0000 120 chr3R:18782573-18782693 1.0000 120 chrX:2352925-2353045 1.0000 120 chr2L:19164076-19164196 1.0000 120 chr2L:20074491-20074611 1.0000 120 chr3L:14222364-14222484 1.0000 120 chr3L:7376296-7376416 1.0000 120 chr2L:8946813-8946933 1.0000 120 chr2L:8129365-8129485 1.0000 120 chr2R:12438513-12438633 1.0000 120 chr3R:31109212-31109332 1.0000 120 chr2R:9411070-9411190 1.0000 120 chr2L:7789111-7789231 1.0000 120 chrX:16922726-16922846 1.0000 120 chr3L:4130887-4131007 1.0000 120 chr3R:25308388-25308508 1.0000 120 chrX:6708766-6708886 1.0000 120 chr3L:852430-852550 1.0000 120 chr3L:11290471-11290591 1.0000 120 chr2R:12947166-12947286 1.0000 120 chr2R:6247987-6248107 1.0000 120 chr2L:13376233-13376353 1.0000 120 chr3R:11175937-11176057 1.0000 120 chr2L:1912626-1912746 1.0000 120 chr2R:8675367-8675487 1.0000 120 chr2R:7014477-7014597 1.0000 120 chr3L:22672040-22672160 1.0000 120 chr3L:12656202-12656322 1.0000 120 chr2L:17420637-17420757 1.0000 120 chrX:18094218-18094338 1.0000 120 chr3R:18991850-18991970 1.0000 120 chr3L:14822298-14822418 1.0000 120 chr3L:15518474-15518594 1.0000 120 chr3L:9674494-9674614 1.0000 120 chr3R:25659002-25659122 1.0000 120 chr2R:19617811-19617931 1.0000 120 chr3L:16652659-16652779 1.0000 120 chr2R:11715709-11715829 1.0000 120 chr3L:12667630-12667750 1.0000 120 chr3L:7376954-7377074 1.0000 120 chr3L:22458484-22458604 1.0000 120 chr2R:19370933-19371053 1.0000 120 chr2L:18630821-18630941 1.0000 120 chr2R:18392969-18393089 1.0000 120 chrX:8885345-8885465 1.0000 120 chrX:8496516-8496636 1.0000 120 chr2R:22246399-22246519 1.0000 120 chrX:1173159-1173279 1.0000 120 chr2L:19002589-19002709 1.0000 120 chr3R:8519267-8519387 1.0000 120 chr3R:18445583-18445703 1.0000 120 chr2R:22999258-22999378 1.0000 120 chr3R:21268106-21268226 1.0000 120 chr2L:7572270-7572390 1.0000 120 chr2L:13511092-13511212 1.0000 120 chr3R:22495043-22495163 1.0000 120 chr3L:4099351-4099471 1.0000 120 chr2L:21053716-21053836 1.0000 120 chr2R:12165651-12165771 1.0000 120 chr2R:7629853-7629973 1.0000 120 chr2R:7026728-7026848 1.0000 120 chrX:15888905-15889025 1.0000 120 chr2L:2039497-2039617 1.0000 120 chrX:16404943-16405063 1.0000 120 chrX:19239509-19239629 1.0000 120 chrX:11858543-11858663 1.0000 120 chrX:1562901-1563021 1.0000 120 chr2R:19125014-19125134 1.0000 120 chr2R:17100803-17100923 1.0000 120 chr3L:15268914-15269034 1.0000 120 chr3R:7538613-7538733 1.0000 120 chrX:6355237-6355357 1.0000 120 chr2R:12678667-12678787 1.0000 120 chrX:16693552-16693672 1.0000 120 chrX:19752444-19752564 1.0000 120 chr2L:17390945-17391065 1.0000 120 chr3R:30009324-30009444 1.0000 120 chr2R:16592666-16592786 1.0000 120 chr2R:7639339-7639459 1.0000 120 chr3L:5349127-5349247 1.0000 120 chr3R:11810957-11811077 1.0000 120 chr2R:16140051-16140171 1.0000 120 chr3R:9644719-9644839 1.0000 120 chr3L:17549210-17549330 1.0000 120 chr2L:18781059-18781179 1.0000 120 chr2R:23149529-23149649 1.0000 120 chr3L:7132718-7132838 1.0000 120 chr2L:163397-163517 1.0000 120 chr2R:14266772-14266892 1.0000 120 chr2R:15557633-15557753 1.0000 120 chr3L:7128521-7128641 1.0000 120 chr3L:21282902-21283022 1.0000 120 chrX:19247822-19247942 1.0000 120 chr2R:14260035-14260155 1.0000 120 chr3R:9458833-9458953 1.0000 120 chr3L:16984905-16985025 1.0000 120 chr3L:18237913-18238033 1.0000 120 chr2L:20325514-20325634 1.0000 120 chr3L:20199985-20200105 1.0000 120 chr3L:2402393-2402513 1.0000 120 chrX:3875102-3875222 1.0000 120 chr3R:13365825-13365945 1.0000 120 chrX:21337255-21337375 1.0000 120 chrX:1848942-1849062 1.0000 120 chr3L:7344187-7344307 1.0000 120 chrX:8413853-8413973 1.0000 120 chr3R:8981739-8981859 1.0000 120 chr2L:82200-82320 1.0000 120 chr2R:12166401-12166521 1.0000 120 chr3R:14032931-14033051 1.0000 120 chr2R:19358817-19358937 1.0000 120 chr3R:21182064-21182184 1.0000 120 chr3R:20006740-20006860 1.0000 120 chr2R:14875667-14875787 1.0000 120 chr2L:496586-496706 1.0000 120 chr3L:20747426-20747546 1.0000 120 chr3L:12675819-12675939 1.0000 120 chr2R:19373786-19373906 1.0000 120 chrX:3357060-3357180 1.0000 120 chr3R:5654049-5654169 1.0000 120 chr3R:26570486-26570606 1.0000 120 chr2L:18787850-18787970 1.0000 120 chr3R:19065590-19065710 1.0000 120 chr3R:25543667-25543787 1.0000 120 chr2L:5341324-5341444 1.0000 120 chr2R:23000087-23000207 1.0000 120 chrX:1120562-1120682 1.0000 120 chr3R:30453357-30453477 1.0000 120 chr3R:23534801-23534921 1.0000 120 chr2R:22282498-22282618 1.0000 120 chr3R:25756238-25756358 1.0000 120 chr2L:3123698-3123818 1.0000 120 chr2L:838920-839040 1.0000 120 chrX:23073514-23073634 1.0000 120 chrX:6253018-6253138 1.0000 120 chr3R:27568665-27568785 1.0000 120 chr3L:18792108-18792228 1.0000 120 chr2L:8496404-8496524 1.0000 120 chr3L:11777576-11777696 1.0000 120 chr2L:10701842-10701962 1.0000 120 chr3R:6810006-6810126 1.0000 120 chr2L:4332681-4332801 1.0000 120 chrX:1346378-1346498 1.0000 120 chr2L:19106380-19106500 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_mirr/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/mirr.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.296 C 0.199 G 0.206 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.296 C 0.199 G 0.206 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGATAAGV MEME-1 width = 8 sites = 56 llr = 489 E-value = 4.0e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:a:aa:5 pos.-specific C 4::::::3 probability G :a::::a3 matrix T 4::a:::: bits 2.3 * * 2.1 * * 1.9 ** *** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ****** (12.6 bits) 0.9 ****** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATAAGA consensus C C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6810006-6810126 65 1.94e-05 GAAGAAGCGG CGATAAGA TAAGATACGG chr2L:3123698-3123818 110 1.94e-05 TCTCTGTTCG CGATAAGA AAG chr2R:19358817-19358937 38 1.94e-05 GGCTGACCAG CGATAAGA TAACCGTTGA chr2L:82200-82320 108 1.94e-05 TTGTTGCAAA CGATAAGA TTGTT chr3R:11810957-11811077 1 1.94e-05 . CGATAAGA CAGTGCTCAT chr3R:30009324-30009444 11 1.94e-05 CGGCCGACAA CGATAAGA GATAGAGACG chr2R:12678667-12678787 109 1.94e-05 ATCACAGATG CGATAAGA TAAA chrX:16404943-16405063 113 1.94e-05 CAATGTTGAG CGATAAGA chr3L:9674494-9674614 61 1.94e-05 GTAATAAGCC CGATAAGA TAATAGAATA chr2L:17420637-17420757 1 1.94e-05 . CGATAAGA AAATCTGTGG chr3L:338267-338387 70 1.94e-05 GGTCGGTAAC CGATAAGA TAAAGTCAAT chr3L:9500354-9500474 60 1.94e-05 TCAATGGCCA CGATAAGA TATAGGATCA chr3R:15694511-15694631 61 1.94e-05 CTACATTCAA CGATAAGA AAACTTACCT chr3R:16275507-16275627 102 1.94e-05 ATTTTGATAG CGATAAGA TTATGGCTGT chr3R:12405285-12405405 69 1.94e-05 GTCGTATAAT CGATAAGA TTATGGCAAA chrX:2787969-2788089 7 1.94e-05 GTTACG CGATAAGA ACTGATTACG chr3L:18792108-18792228 86 3.24e-05 GTATACGCCG CGATAAGC AAAGATAAGA chr3R:21182064-21182184 48 3.24e-05 CTTAACTGGG CGATAAGC TGCCCAGTGT chrX:8413853-8413973 112 3.24e-05 TGTGATAAGG CGATAAGC C chr2R:9135998-9136118 12 3.24e-05 AATAGCAAAC CGATAAGC TATAATCAAA chr3R:9644719-9644839 41 4.59e-05 ATGTATGTTT CGATAAGG GTCGATTGGC chr2L:19002589-19002709 75 4.59e-05 CTGACAGGCG CGATAAGG ACAAGAGTAG chr3R:26465259-26465379 112 4.59e-05 AAACAATGGA CGATAAGG A chr3L:20199985-20200105 52 7.50e-05 ACGTTTCTAT TGATAAGA TAATGAATTT chr3L:16984905-16985025 91 7.50e-05 TGTTATCAGC TGATAAGA TTGGCGCGCC chr3L:5349127-5349247 86 7.50e-05 TGAAGAATAT TGATAAGA TTGTCAGCAT chr2L:16255337-16255457 90 7.50e-05 GTAGTACTCT TGATAAGA AAATGGAATT chr3L:15692507-15692627 7 7.50e-05 CATTTT TGATAAGA TTAGCGAGCT chr2L:5790908-5791028 8 7.50e-05 CTTTCGT TGATAAGA CGGCATTTTC chr3L:12695039-12695159 85 7.50e-05 AGAGCCGCAT TGATAAGA AATCGTACGA chr3R:25756238-25756358 14 9.46e-05 AAAAAATTGC TGATAAGC CCTTATCACA chrX:6355237-6355357 39 9.46e-05 CGGAGCGAAC TGATAAGC GTGACAAATT chrX:15888905-15889025 62 9.46e-05 ACTTTCTTGT TGATAAGC TGTTAATCTT chr2L:1912626-1912746 109 9.46e-05 GGGGAAGGGT TGATAAGC GATA chrX:16922726-16922846 45 9.46e-05 TGCTGTAGAA TGATAAGC TGTCTCTATC chr2L:20074491-20074611 106 9.46e-05 AATATGGTTT TGATAAGC GAGCTTG chr2R:8912361-8912481 73 9.46e-05 AGGCTGCATT TGATAAGC ACATTAAATT chr2R:22281954-22282074 68 9.46e-05 CCTAATCACA TGATAAGC ATTTACCATA chr2L:19098890-19099010 93 9.46e-05 CCGGAGACGA TGATAAGC GGGAGCGAAC chr3L:11777576-11777696 87 1.15e-04 CGAGTGGTTC TGATAAGG CAGGGCAAAT chr3R:13365825-13365945 67 1.15e-04 CGGGTTCACT TGATAAGG CAGGCCCAAC chr2R:15557633-15557753 68 1.15e-04 GTATGCCGAT TGATAAGG GTTGTATGTG chr2L:17390945-17391065 42 1.15e-04 gttctgttgt tgataAGG AGAACACATT chr2R:7629853-7629973 46 1.15e-04 ACAAAACTTT TGATAAGG CTAAGGCCAA chr3L:11290471-11290591 97 1.15e-04 GACGTCACAG TGATAAGG TTCGTCATCG chr3R:12211712-12211832 1 1.15e-04 . TGATAAGG TTCCTCTGGT chrX:13313250-13313370 39 1.15e-04 TGCCAATTGC TGATAAGG CGCAACAAGC chr2R:23000087-23000207 110 1.44e-04 ACTCATGTGC AGATAAGA TAG chr2L:18630821-18630941 56 1.44e-04 CGAGCGGATA AGATAAGA TTCTGTAAAT chr2R:24140256-24140376 83 1.44e-04 CTGGCCCTCC AGATAAGA TAGCGTTCCT chr2R:12947166-12947286 48 1.63e-04 TTAGCAAGTC AGATAAGC CGAATTGTGG chr3L:1969129-1969249 102 1.63e-04 CTGTAATGGC AGATAAGC GGTCGAACAT chr3R:23711359-23711479 104 1.63e-04 TGCCCCGATT AGATAAGC GATGCCGCC chr2R:12263365-12263485 17 1.83e-04 TCCCCCGATT AGATAAGG TCAAGCAGGG chr3R:23097531-23097651 82 1.83e-04 TGGGTTTTGC AGATAAGG GCGTTACTAT chr2L:1707098-1707218 2 1.83e-04 T AGATAAGG ACTAAAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6810006-6810126 1.9e-05 64_[+1]_48 chr2L:3123698-3123818 1.9e-05 109_[+1]_3 chr2R:19358817-19358937 1.9e-05 37_[+1]_75 chr2L:82200-82320 1.9e-05 107_[+1]_5 chr3R:11810957-11811077 1.9e-05 [+1]_112 chr3R:30009324-30009444 1.9e-05 10_[+1]_102 chr2R:12678667-12678787 1.9e-05 108_[+1]_4 chrX:16404943-16405063 1.9e-05 112_[+1] chr3L:9674494-9674614 1.9e-05 60_[+1]_52 chr2L:17420637-17420757 1.9e-05 [+1]_112 chr3L:338267-338387 1.9e-05 69_[+1]_43 chr3L:9500354-9500474 1.9e-05 59_[+1]_53 chr3R:15694511-15694631 1.9e-05 60_[+1]_52 chr3R:16275507-16275627 1.9e-05 101_[+1]_11 chr3R:12405285-12405405 1.9e-05 68_[+1]_44 chrX:2787969-2788089 1.9e-05 6_[+1]_106 chr3L:18792108-18792228 3.2e-05 85_[+1]_27 chr3R:21182064-21182184 3.2e-05 47_[+1]_65 chrX:8413853-8413973 3.2e-05 111_[+1]_1 chr2R:9135998-9136118 3.2e-05 11_[+1]_101 chr3R:9644719-9644839 4.6e-05 40_[+1]_72 chr2L:19002589-19002709 4.6e-05 74_[+1]_38 chr3R:26465259-26465379 4.6e-05 111_[+1]_1 chr3L:20199985-20200105 7.5e-05 51_[+1]_61 chr3L:16984905-16985025 7.5e-05 90_[+1]_22 chr3L:5349127-5349247 7.5e-05 85_[+1]_27 chr2L:16255337-16255457 7.5e-05 89_[+1]_23 chr3L:15692507-15692627 7.5e-05 6_[+1]_106 chr2L:5790908-5791028 7.5e-05 7_[+1]_105 chr3L:12695039-12695159 7.5e-05 84_[+1]_28 chr3R:25756238-25756358 9.5e-05 13_[+1]_99 chrX:6355237-6355357 9.5e-05 38_[+1]_74 chrX:15888905-15889025 9.5e-05 61_[+1]_51 chr2L:1912626-1912746 9.5e-05 108_[+1]_4 chrX:16922726-16922846 9.5e-05 44_[+1]_68 chr2L:20074491-20074611 9.5e-05 105_[+1]_7 chr2R:8912361-8912481 9.5e-05 72_[+1]_40 chr2R:22281954-22282074 9.5e-05 67_[+1]_45 chr2L:19098890-19099010 9.5e-05 92_[+1]_20 chr3L:11777576-11777696 0.00011 86_[+1]_26 chr3R:13365825-13365945 0.00011 66_[+1]_46 chr2R:15557633-15557753 0.00011 67_[+1]_45 chr2L:17390945-17391065 0.00011 41_[+1]_71 chr2R:7629853-7629973 0.00011 45_[+1]_67 chr3L:11290471-11290591 0.00011 96_[+1]_16 chr3R:12211712-12211832 0.00011 [+1]_112 chrX:13313250-13313370 0.00011 38_[+1]_74 chr2R:23000087-23000207 0.00014 109_[+1]_3 chr2L:18630821-18630941 0.00014 55_[+1]_57 chr2R:24140256-24140376 0.00014 82_[+1]_30 chr2R:12947166-12947286 0.00016 47_[+1]_65 chr3L:1969129-1969249 0.00016 101_[+1]_11 chr3R:23711359-23711479 0.00016 103_[+1]_9 chr2R:12263365-12263485 0.00018 16_[+1]_96 chr3R:23097531-23097651 0.00018 81_[+1]_31 chr2L:1707098-1707218 0.00018 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGATAAGV width=8 seqs=56 chr3R:6810006-6810126 ( 65) CGATAAGA 1 chr2L:3123698-3123818 ( 110) CGATAAGA 1 chr2R:19358817-19358937 ( 38) CGATAAGA 1 chr2L:82200-82320 ( 108) CGATAAGA 1 chr3R:11810957-11811077 ( 1) CGATAAGA 1 chr3R:30009324-30009444 ( 11) CGATAAGA 1 chr2R:12678667-12678787 ( 109) CGATAAGA 1 chrX:16404943-16405063 ( 113) CGATAAGA 1 chr3L:9674494-9674614 ( 61) CGATAAGA 1 chr2L:17420637-17420757 ( 1) CGATAAGA 1 chr3L:338267-338387 ( 70) CGATAAGA 1 chr3L:9500354-9500474 ( 60) CGATAAGA 1 chr3R:15694511-15694631 ( 61) CGATAAGA 1 chr3R:16275507-16275627 ( 102) CGATAAGA 1 chr3R:12405285-12405405 ( 69) CGATAAGA 1 chrX:2787969-2788089 ( 7) CGATAAGA 1 chr3L:18792108-18792228 ( 86) CGATAAGC 1 chr3R:21182064-21182184 ( 48) CGATAAGC 1 chrX:8413853-8413973 ( 112) CGATAAGC 1 chr2R:9135998-9136118 ( 12) CGATAAGC 1 chr3R:9644719-9644839 ( 41) CGATAAGG 1 chr2L:19002589-19002709 ( 75) CGATAAGG 1 chr3R:26465259-26465379 ( 112) CGATAAGG 1 chr3L:20199985-20200105 ( 52) TGATAAGA 1 chr3L:16984905-16985025 ( 91) TGATAAGA 1 chr3L:5349127-5349247 ( 86) TGATAAGA 1 chr2L:16255337-16255457 ( 90) TGATAAGA 1 chr3L:15692507-15692627 ( 7) TGATAAGA 1 chr2L:5790908-5791028 ( 8) TGATAAGA 1 chr3L:12695039-12695159 ( 85) TGATAAGA 1 chr3R:25756238-25756358 ( 14) TGATAAGC 1 chrX:6355237-6355357 ( 39) TGATAAGC 1 chrX:15888905-15889025 ( 62) TGATAAGC 1 chr2L:1912626-1912746 ( 109) TGATAAGC 1 chrX:16922726-16922846 ( 45) TGATAAGC 1 chr2L:20074491-20074611 ( 106) TGATAAGC 1 chr2R:8912361-8912481 ( 73) TGATAAGC 1 chr2R:22281954-22282074 ( 68) TGATAAGC 1 chr2L:19098890-19099010 ( 93) TGATAAGC 1 chr3L:11777576-11777696 ( 87) TGATAAGG 1 chr3R:13365825-13365945 ( 67) TGATAAGG 1 chr2R:15557633-15557753 ( 68) TGATAAGG 1 chr2L:17390945-17391065 ( 42) TGATAAGG 1 chr2R:7629853-7629973 ( 46) TGATAAGG 1 chr3L:11290471-11290591 ( 97) TGATAAGG 1 chr3R:12211712-12211832 ( 1) TGATAAGG 1 chrX:13313250-13313370 ( 39) TGATAAGG 1 chr2R:23000087-23000207 ( 110) AGATAAGA 1 chr2L:18630821-18630941 ( 56) AGATAAGA 1 chr2R:24140256-24140376 ( 83) AGATAAGA 1 chr2R:12947166-12947286 ( 48) AGATAAGC 1 chr3L:1969129-1969249 ( 102) AGATAAGC 1 chr3R:23711359-23711479 ( 104) AGATAAGC 1 chr2R:12263365-12263485 ( 17) AGATAAGG 1 chr3R:23097531-23097651 ( 82) AGATAAGG 1 chr2L:1707098-1707218 ( 2) AGATAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1998 E= 4.0e-023 -88 105 -1245 52 -1245 -1245 228 -1245 176 -1245 -1245 -1245 -1245 -1245 -1245 174 176 -1245 -1245 -1245 176 -1245 -1245 -1245 -1245 -1245 228 -1245 65 52 28 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 4.0e-023 0.160714 0.410714 0.000000 0.428571 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.464286 0.285714 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGATAAGV MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GATAAG[ACG] -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTATCA MEME-2 width = 8 sites = 65 llr = 516 E-value = 2.0e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::a::5 pos.-specific C 28::::a: probability G 22:::::2 matrix T 5:aa:a:2 bits 2.3 * 2.1 * 1.9 * * 1.6 ****** Relative 1.4 ****** Entropy 1.2 ****** (11.4 bits) 0.9 ****** 0.7 ****** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus CG T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10701842-10701962 15 2.77e-05 CCCACAAATA TCTTATCA ATCACAAATG chr3L:2402393-2402513 49 2.77e-05 AACCACGAAA TCTTATCA GACTCGCGGT chr2R:7639339-7639459 15 2.77e-05 GGTACTTCCA TCTTATCA CTGCGTAACT chr2R:7026728-7026848 86 2.77e-05 CGTATTCTTA TCTTATCA GATAAATTTA chr3R:21268106-21268226 12 2.77e-05 TTAGGCTTTA TCTTATCA TGCTATGTCC chr3R:8519267-8519387 99 2.77e-05 TATGGTAGCT TCTTATCA TTCACAGTGC chr2L:8946813-8946933 3 2.77e-05 GC TCTTATCA TTTTCCATAC chr2L:18985572-18985692 11 2.77e-05 AACCGAGATA TCTTATCA GCCTAGACAA chr2R:13290108-13290228 4 2.77e-05 CTA TCTTATCA CTGTTTTGAG chr2L:16799647-16799767 52 2.77e-05 ATCGAAGATA TCTTATCA GTCCGCCGTT chr3R:25756238-25756358 22 4.62e-05 GCTGATAAGC CCTTATCA CATGGTCATA chr3R:5654049-5654169 9 4.62e-05 AGCGAACG CCTTATCA TCTTAGCTGA chr2R:24140256-24140376 98 4.62e-05 AGATAGCGTT CCTTATCA GCGGCGAAGA chr2L:16882957-16883077 61 4.62e-05 ACAGCGTTTC CCTTATCA CTGTGAGTGA chr2R:9744682-9744802 111 4.62e-05 TGACAGCGAC CCTTATCA CT chrX:1346378-1346498 79 6.55e-05 CGCTATCTTA TCTTATCG AGCTGATGAA chrX:11858543-11858663 90 6.55e-05 TTCCTCCGAT TCTTATCG TCCGGCGATA chr2R:9411070-9411190 56 6.55e-05 CGCGGCATTA TCTTATCG CAAGCGTTCT chr3L:15978249-15978369 35 6.55e-05 ATGTGATTAG TCTTATCG AAGAGGCCGG chr2L:6089758-6089878 80 6.55e-05 TATTGCCTTA TCTTATCG GGGCTCATCG chr3R:12211712-12211832 76 6.55e-05 TTTGTGGTAA TCTTATCG GGCTATGAAC chr3R:4446584-4446704 80 6.55e-05 AAGACCACCT TCTTATCG TTTAACTACT chr3R:19065590-19065710 65 8.46e-05 AATCAGCCTA GCTTATCA TCGGCAAGTA chr2R:19373786-19373906 1 8.46e-05 . GCTTATCA CAAGTATCGA chr3L:21282902-21283022 30 8.46e-05 TTGGAAACCA GCTTATCA GCAATTACCA chr3R:7538613-7538733 22 8.46e-05 GATAGCCGGA GCTTATCA ACCTAAAAAT chr2L:21053716-21053836 107 8.46e-05 TCCGTGCTTT GCTTATCA GGCCTT chr2L:13376233-13376353 66 8.46e-05 TAACACTCGT GCTTATCA AATAATTGGT chr2R:18018106-18018226 52 8.46e-05 CAAAGTTACT GCTTATCA GTTTTGGCTA chr3R:18783318-18783438 95 8.46e-05 ATTTACACGT GCTTATCA AATGAGAAGC chrX:13308131-13308251 94 8.46e-05 AATGTTACGC GCTTATCA AGCGGGTTTA chr3R:6810006-6810126 47 1.25e-04 TAATGCCAGA CCTTATCG GAAGAAGCGG chr3R:30453357-30453477 76 1.25e-04 GTTACCTCAT CCTTATCG TGCATATTCA chr2R:12166401-12166521 11 1.25e-04 ATAAAATCTC TCTTATCT GCGAAAGGAA chr2L:2039497-2039617 26 1.25e-04 ACAGGCCATA TCTTATCT GCGGATAGTC chrX:8885345-8885465 62 1.25e-04 CATGTGCATA TCTTATCT AACTTCACAA chr3L:16652659-16652779 59 1.25e-04 AGTTGGCCAA CCTTATCG GTGGCCCGTT chr3R:18991850-18991970 49 1.25e-04 TCCATATATA TCTTATCT CCGCCATATG chr2L:12708699-12708819 26 1.25e-04 TATTTTCATA TCTTATCT TGTTAATTTG chr3R:20006740-20006860 48 1.57e-04 ATTGTCTAGC CCTTATCT AGCCACTTAC chr2R:17086538-17086658 7 1.57e-04 GAAGAA CCTTATCT TTTCGATGGG chr3R:14032931-14033051 16 1.86e-04 CTTTGAGGCT TGTTATCA GTAGAAACAA chr3L:16984905-16985025 81 1.86e-04 ACAATTTCTC TGTTATCA GCTGATAAGA chr3L:4099351-4099471 13 1.86e-04 CATGTCAATT TGTTATCA ATTTATTCAT chr2L:19002589-19002709 54 1.86e-04 CATGAGTACG TGTTATCA CAGCTGACAG chr3R:14695812-14695932 37 1.86e-04 TTGCATAAAT TGTTATCA ATTTTCCTTT chr3R:16275507-16275627 65 1.86e-04 TACAGTACAC TGTTATCA GGCGTAGAAG chr3R:30390455-30390575 21 1.86e-04 ATTGTGATAA TGTTATCA TAAATAAGTT chr2R:16592666-16592786 25 2.05e-04 CCAGTTCGGT GCTTATCT GGCTTAATTA chrX:16693552-16693672 10 2.05e-04 TAATCAACC GCTTATCT TTAAAGGTCG chr3R:21182064-21182184 102 2.52e-04 AGAAACAGAA ACTTATCA GTTCTGGCCA chr2L:3307831-3307951 89 2.52e-04 TGTTCTTTGC ACTTATCA CACTATATGA chr3R:23711359-23711479 5 2.52e-04 ACCC ACTTATCA ACTATCTATG chr3R:11175937-11176057 14 2.72e-04 ACCAGAGAAT TGTTATCG CAATGGTTTG chr2L:496586-496706 69 3.53e-04 TAATCGTTAT CGTTATCG CTCCACAAGA chr3R:13365825-13365945 26 3.53e-04 ATAGTAAACA TGTTATCT ATCTATAAAC chr2L:13511092-13511212 67 3.53e-04 TGTATTATAT CGTTATCG GGCCGACATC chrX:1173159-1173279 10 3.53e-04 AAACGGCGG ACTTATCG TGCGTAATGC chr3R:19619952-19620072 108 3.53e-04 TTACATGGGG ACTTATCG CTGGC chr3R:16173655-16173775 33 3.53e-04 ATAACCACTG TGTTATCT TGGGAAGACA chrX:15888905-15889025 34 4.14e-04 TAGATAGTTG CGTTATCT CAAAACGAAA chr3L:7376296-7376416 46 4.14e-04 CAAAATGTAG ACTTATCT ATTGAAATGG chr3L:9500354-9500474 6 4.14e-04 TCATA CGTTATCT ACTCAAAGCG chr2L:21109841-21109961 66 4.14e-04 GTATACAATT CGTTATCT AACGTGTTTC chr2R:19690620-19690740 110 4.14e-04 ATTAGATAGT ACTTATCT TTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10701842-10701962 2.8e-05 14_[+2]_98 chr3L:2402393-2402513 2.8e-05 48_[+2]_64 chr2R:7639339-7639459 2.8e-05 14_[+2]_98 chr2R:7026728-7026848 2.8e-05 85_[+2]_27 chr3R:21268106-21268226 2.8e-05 11_[+2]_101 chr3R:8519267-8519387 2.8e-05 98_[+2]_14 chr2L:8946813-8946933 2.8e-05 2_[+2]_110 chr2L:18985572-18985692 2.8e-05 10_[+2]_102 chr2R:13290108-13290228 2.8e-05 3_[+2]_109 chr2L:16799647-16799767 2.8e-05 51_[+2]_61 chr3R:25756238-25756358 4.6e-05 21_[+2]_91 chr3R:5654049-5654169 4.6e-05 8_[+2]_104 chr2R:24140256-24140376 4.6e-05 97_[+2]_15 chr2L:16882957-16883077 4.6e-05 60_[+2]_52 chr2R:9744682-9744802 4.6e-05 110_[+2]_2 chrX:1346378-1346498 6.5e-05 78_[+2]_34 chrX:11858543-11858663 6.5e-05 89_[+2]_23 chr2R:9411070-9411190 6.5e-05 55_[+2]_57 chr3L:15978249-15978369 6.5e-05 34_[+2]_78 chr2L:6089758-6089878 6.5e-05 79_[+2]_33 chr3R:12211712-12211832 6.5e-05 75_[+2]_37 chr3R:4446584-4446704 6.5e-05 79_[+2]_33 chr3R:19065590-19065710 8.5e-05 64_[+2]_48 chr2R:19373786-19373906 8.5e-05 [+2]_112 chr3L:21282902-21283022 8.5e-05 29_[+2]_83 chr3R:7538613-7538733 8.5e-05 21_[+2]_91 chr2L:21053716-21053836 8.5e-05 106_[+2]_6 chr2L:13376233-13376353 8.5e-05 65_[+2]_47 chr2R:18018106-18018226 8.5e-05 51_[+2]_61 chr3R:18783318-18783438 8.5e-05 94_[+2]_18 chrX:13308131-13308251 8.5e-05 93_[+2]_19 chr3R:6810006-6810126 0.00013 46_[+2]_66 chr3R:30453357-30453477 0.00013 75_[+2]_37 chr2R:12166401-12166521 0.00013 10_[+2]_102 chr2L:2039497-2039617 0.00013 25_[+2]_87 chrX:8885345-8885465 0.00013 61_[+2]_51 chr3L:16652659-16652779 0.00013 58_[+2]_54 chr3R:18991850-18991970 0.00013 48_[+2]_64 chr2L:12708699-12708819 0.00013 25_[+2]_87 chr3R:20006740-20006860 0.00016 47_[+2]_65 chr2R:17086538-17086658 0.00016 6_[+2]_106 chr3R:14032931-14033051 0.00019 15_[+2]_97 chr3L:16984905-16985025 0.00019 80_[+2]_32 chr3L:4099351-4099471 0.00019 12_[+2]_100 chr2L:19002589-19002709 0.00019 53_[+2]_59 chr3R:14695812-14695932 0.00019 36_[+2]_76 chr3R:16275507-16275627 0.00019 64_[+2]_48 chr3R:30390455-30390575 0.00019 20_[+2]_92 chr2R:16592666-16592786 0.00021 24_[+2]_88 chrX:16693552-16693672 0.00021 9_[+2]_103 chr3R:21182064-21182184 0.00025 101_[+2]_11 chr2L:3307831-3307951 0.00025 88_[+2]_24 chr3R:23711359-23711479 0.00025 4_[+2]_108 chr3R:11175937-11176057 0.00027 13_[+2]_99 chr2L:496586-496706 0.00035 68_[+2]_44 chr3R:13365825-13365945 0.00035 25_[+2]_87 chr2L:13511092-13511212 0.00035 66_[+2]_46 chrX:1173159-1173279 0.00035 9_[+2]_103 chr3R:19619952-19620072 0.00035 107_[+2]_5 chr3R:16173655-16173775 0.00035 32_[+2]_80 chrX:15888905-15889025 0.00041 33_[+2]_79 chr3L:7376296-7376416 0.00041 45_[+2]_67 chr3L:9500354-9500474 0.00041 5_[+2]_107 chr2L:21109841-21109961 0.00041 65_[+2]_47 chr2R:19690620-19690740 0.00041 109_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCA width=8 seqs=65 chr2L:10701842-10701962 ( 15) TCTTATCA 1 chr3L:2402393-2402513 ( 49) TCTTATCA 1 chr2R:7639339-7639459 ( 15) TCTTATCA 1 chr2R:7026728-7026848 ( 86) TCTTATCA 1 chr3R:21268106-21268226 ( 12) TCTTATCA 1 chr3R:8519267-8519387 ( 99) TCTTATCA 1 chr2L:8946813-8946933 ( 3) TCTTATCA 1 chr2L:18985572-18985692 ( 11) TCTTATCA 1 chr2R:13290108-13290228 ( 4) TCTTATCA 1 chr2L:16799647-16799767 ( 52) TCTTATCA 1 chr3R:25756238-25756358 ( 22) CCTTATCA 1 chr3R:5654049-5654169 ( 9) CCTTATCA 1 chr2R:24140256-24140376 ( 98) CCTTATCA 1 chr2L:16882957-16883077 ( 61) CCTTATCA 1 chr2R:9744682-9744802 ( 111) CCTTATCA 1 chrX:1346378-1346498 ( 79) TCTTATCG 1 chrX:11858543-11858663 ( 90) TCTTATCG 1 chr2R:9411070-9411190 ( 56) TCTTATCG 1 chr3L:15978249-15978369 ( 35) TCTTATCG 1 chr2L:6089758-6089878 ( 80) TCTTATCG 1 chr3R:12211712-12211832 ( 76) TCTTATCG 1 chr3R:4446584-4446704 ( 80) TCTTATCG 1 chr3R:19065590-19065710 ( 65) GCTTATCA 1 chr2R:19373786-19373906 ( 1) GCTTATCA 1 chr3L:21282902-21283022 ( 30) GCTTATCA 1 chr3R:7538613-7538733 ( 22) GCTTATCA 1 chr2L:21053716-21053836 ( 107) GCTTATCA 1 chr2L:13376233-13376353 ( 66) GCTTATCA 1 chr2R:18018106-18018226 ( 52) GCTTATCA 1 chr3R:18783318-18783438 ( 95) GCTTATCA 1 chrX:13308131-13308251 ( 94) GCTTATCA 1 chr3R:6810006-6810126 ( 47) CCTTATCG 1 chr3R:30453357-30453477 ( 76) CCTTATCG 1 chr2R:12166401-12166521 ( 11) TCTTATCT 1 chr2L:2039497-2039617 ( 26) TCTTATCT 1 chrX:8885345-8885465 ( 62) TCTTATCT 1 chr3L:16652659-16652779 ( 59) CCTTATCG 1 chr3R:18991850-18991970 ( 49) TCTTATCT 1 chr2L:12708699-12708819 ( 26) TCTTATCT 1 chr3R:20006740-20006860 ( 48) CCTTATCT 1 chr2R:17086538-17086658 ( 7) CCTTATCT 1 chr3R:14032931-14033051 ( 16) TGTTATCA 1 chr3L:16984905-16985025 ( 81) TGTTATCA 1 chr3L:4099351-4099471 ( 13) TGTTATCA 1 chr2L:19002589-19002709 ( 54) TGTTATCA 1 chr3R:14695812-14695932 ( 37) TGTTATCA 1 chr3R:16275507-16275627 ( 65) TGTTATCA 1 chr3R:30390455-30390575 ( 21) TGTTATCA 1 chr2R:16592666-16592786 ( 25) GCTTATCT 1 chrX:16693552-16693672 ( 10) GCTTATCT 1 chr3R:21182064-21182184 ( 102) ACTTATCA 1 chr2L:3307831-3307951 ( 89) ACTTATCA 1 chr3R:23711359-23711479 ( 5) ACTTATCA 1 chr3R:11175937-11176057 ( 14) TGTTATCG 1 chr2L:496586-496706 ( 69) CGTTATCG 1 chr3R:13365825-13365945 ( 26) TGTTATCT 1 chr2L:13511092-13511212 ( 67) CGTTATCG 1 chrX:1173159-1173279 ( 10) ACTTATCG 1 chr3R:19619952-19620072 ( 108) ACTTATCG 1 chr3R:16173655-16173775 ( 33) TGTTATCT 1 chrX:15888905-15889025 ( 34) CGTTATCT 1 chr3L:7376296-7376416 ( 46) ACTTATCT 1 chr3L:9500354-9500474 ( 6) CGTTATCT 1 chr2L:21109841-21109961 ( 66) CGTTATCT 1 chr2R:19690620-19690740 ( 110) ACTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 2.0e-011 -146 22 -29 72 -1267 195 16 -1267 -1267 -1267 -1267 174 -1267 -1267 -1267 174 176 -1267 -1267 -1267 -1267 -1267 -1267 174 -1267 233 -1267 -1267 82 -1267 16 -28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 2.0e-011 0.107692 0.230769 0.169231 0.492308 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.523077 0.000000 0.230769 0.246154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CG]TTATC[ATG] -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAHTGGC MEME-3 width = 8 sites = 19 llr = 180 E-value = 4.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :aa4:::: pos.-specific C a::2:::7 probability G :::1:aa3 matrix T :::3a::: bits 2.3 * ** 2.1 * ** 1.9 *** ** 1.6 *** *** Relative 1.4 *** **** Entropy 1.2 *** **** (13.7 bits) 0.9 *** **** 0.7 *** **** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel CAAATGGC consensus T G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:23073514-23073634 105 1.30e-05 CGCTTACATT CAAATGGC CATATAAC chr3L:12675819-12675939 43 1.30e-05 AGGCCCAAAA CAAATGGC TGGCCATATA chrX:19247822-19247942 33 1.30e-05 AAACTAATCT CAAATGGC TAATGGTGAT chr2L:163397-163517 52 1.30e-05 AGCACAAATG CAAATGGC TGGCCATGCC chr2R:16140051-16140171 104 1.30e-05 AAAACAATAT CAAATGGC CTATAGCAA chrX:19239509-19239629 93 1.30e-05 AAACTAACCA CAAATGGC TTGCAGACAA chr2R:19358817-19358937 19 3.50e-05 ACAGGTTTTG CAACTGGC GGGCTGACCA chrX:8885345-8885465 98 3.50e-05 ATACGCAGGG CAATTGGC CTAAAAATAT chr3L:16652659-16652779 33 3.50e-05 TTTACGCAAT CAATTGGC TGCAAATCAG chr3R:26465259-26465379 17 3.50e-05 TTAGATAAGA CAACTGGC AACTGCTCTT chrX:10841347-10841467 112 3.50e-05 ACAACTCGTT CAATTGGC T chr2R:22249564-22249684 51 3.50e-05 GGAGGCCTTT CAACTGGC CAAGGGTCCC chr3R:11810957-11811077 29 4.40e-05 GCGTACATTT CAAGTGGC ACACTTAAGT chr2L:12720649-12720769 104 4.40e-05 GACCTTCCTC CAAGTGGC CCTGGACAT chr2L:4332681-4332801 72 5.75e-05 ATATGCAATC CAAATGGG GGAGGGACAA chr2R:12166401-12166521 36 8.02e-05 GAAGGTGAGG CAATTGGG TGTATAAATT chr2R:18392969-18393089 11 8.02e-05 AATTGCTAAT CAACTGGG GGATGAAgga chr3L:338267-338387 84 8.02e-05 AAGATAAAGT CAATTGGG AAACGACGCC chr2R:9135998-9136118 52 8.02e-05 ATAGTTTGGG CAATTGGG ACAATATCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:23073514-23073634 1.3e-05 104_[+3]_8 chr3L:12675819-12675939 1.3e-05 42_[+3]_70 chrX:19247822-19247942 1.3e-05 32_[+3]_80 chr2L:163397-163517 1.3e-05 51_[+3]_61 chr2R:16140051-16140171 1.3e-05 103_[+3]_9 chrX:19239509-19239629 1.3e-05 92_[+3]_20 chr2R:19358817-19358937 3.5e-05 18_[+3]_94 chrX:8885345-8885465 3.5e-05 97_[+3]_15 chr3L:16652659-16652779 3.5e-05 32_[+3]_80 chr3R:26465259-26465379 3.5e-05 16_[+3]_96 chrX:10841347-10841467 3.5e-05 111_[+3]_1 chr2R:22249564-22249684 3.5e-05 50_[+3]_62 chr3R:11810957-11811077 4.4e-05 28_[+3]_84 chr2L:12720649-12720769 4.4e-05 103_[+3]_9 chr2L:4332681-4332801 5.8e-05 71_[+3]_41 chr2R:12166401-12166521 8e-05 35_[+3]_77 chr2R:18392969-18393089 8e-05 10_[+3]_102 chr3L:338267-338387 8e-05 83_[+3]_29 chr2R:9135998-9136118 8e-05 51_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAHTGGC width=8 seqs=19 chrX:23073514-23073634 ( 105) CAAATGGC 1 chr3L:12675819-12675939 ( 43) CAAATGGC 1 chrX:19247822-19247942 ( 33) CAAATGGC 1 chr2L:163397-163517 ( 52) CAAATGGC 1 chr2R:16140051-16140171 ( 104) CAAATGGC 1 chrX:19239509-19239629 ( 93) CAAATGGC 1 chr2R:19358817-19358937 ( 19) CAACTGGC 1 chrX:8885345-8885465 ( 98) CAATTGGC 1 chr3L:16652659-16652779 ( 33) CAATTGGC 1 chr3R:26465259-26465379 ( 17) CAACTGGC 1 chrX:10841347-10841467 ( 112) CAATTGGC 1 chr2R:22249564-22249684 ( 51) CAACTGGC 1 chr3R:11810957-11811077 ( 29) CAAGTGGC 1 chr2L:12720649-12720769 ( 104) CAAGTGGC 1 chr2L:4332681-4332801 ( 72) CAAATGGG 1 chr2R:12166401-12166521 ( 36) CAATTGGG 1 chr2R:18392969-18393089 ( 11) CAACTGGG 1 chr3L:338267-338387 ( 84) CAATTGGG 1 chr2R:9135998-9136118 ( 52) CAATTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 4.7e+002 -1089 233 -1089 -1089 176 -1089 -1089 -1089 176 -1089 -1089 -1089 32 8 -97 8 -1089 -1089 -1089 174 -1089 -1089 228 -1089 -1089 -1089 228 -1089 -1089 189 35 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.7e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.368421 0.210526 0.105263 0.315789 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.736842 0.263158 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAHTGGC MEME-3 regular expression -------------------------------------------------------------------------------- CAA[ATC]TGG[CG] -------------------------------------------------------------------------------- Time 19.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCMSTT MEME-4 width = 8 sites = 13 llr = 130 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C aaaa55:3 probability G :::::5:: matrix T ::::::a7 bits 2.3 **** 2.1 **** 1.9 **** 1.6 **** * Relative 1.4 **** ** Entropy 1.2 ******* (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCTT consensus AG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26570486-26570606 106 5.55e-06 CTGGGTTGGT CCCCCCTT TTGTAAT chrX:6708766-6708886 99 1.13e-05 CTGTGAGATA CCCCCGTT GTAAAAgtgt chr3R:31109212-31109332 60 1.13e-05 CGCTAATCGA CCCCCGTT TTTTGTATAT chr2L:790088-790208 5 1.13e-05 TTAG CCCCCGTT TTCGCCGCCT chrX:3357060-3357180 107 1.50e-05 catataGAAC CCCCCCTC CAGCGA chr2R:22281954-22282074 1 1.50e-05 . CCCCCCTC GATTAATATT chr3L:16984905-16985025 30 2.71e-05 CCCAATTCTC CCCCACTT ATTAGCGGCC chrX:6355237-6355357 16 2.71e-05 ATAACTAACA CCCCCGTC GTTTTCGGAG chr3L:12686249-12686369 45 2.71e-05 CGCCCGACTT CCCCACTT GGTTTTTCGC chr3L:12695840-12695960 37 2.71e-05 GTAATGGCGG CCCCACTT TGAAGATCGC chr2R:22999258-22999378 19 3.56e-05 TTCCTACCCT CCCCAGTT TGCCAATCAT chr2R:18392969-18393089 95 3.56e-05 tggtggtgAC CCCCAGTT ATTGTGGCCC chr2L:838920-839040 100 4.11e-05 CCTCGAAACA CCCCACTC CTTAATAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26570486-26570606 5.6e-06 105_[+4]_7 chrX:6708766-6708886 1.1e-05 98_[+4]_14 chr3R:31109212-31109332 1.1e-05 59_[+4]_53 chr2L:790088-790208 1.1e-05 4_[+4]_108 chrX:3357060-3357180 1.5e-05 106_[+4]_6 chr2R:22281954-22282074 1.5e-05 [+4]_112 chr3L:16984905-16985025 2.7e-05 29_[+4]_83 chrX:6355237-6355357 2.7e-05 15_[+4]_97 chr3L:12686249-12686369 2.7e-05 44_[+4]_68 chr3L:12695840-12695960 2.7e-05 36_[+4]_76 chr2R:22999258-22999378 3.6e-05 18_[+4]_94 chr2R:18392969-18393089 3.6e-05 94_[+4]_18 chr2L:838920-839040 4.1e-05 99_[+4]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCMSTT width=8 seqs=13 chr3R:26570486-26570606 ( 106) CCCCCCTT 1 chrX:6708766-6708886 ( 99) CCCCCGTT 1 chr3R:31109212-31109332 ( 60) CCCCCGTT 1 chr2L:790088-790208 ( 5) CCCCCGTT 1 chrX:3357060-3357180 ( 107) CCCCCCTC 1 chr2R:22281954-22282074 ( 1) CCCCCCTC 1 chr3L:16984905-16985025 ( 30) CCCCACTT 1 chrX:6355237-6355357 ( 16) CCCCCGTC 1 chr3L:12686249-12686369 ( 45) CCCCACTT 1 chr3L:12695840-12695960 ( 37) CCCCACTT 1 chr2R:22999258-22999378 ( 19) CCCCAGTT 1 chr2R:18392969-18393089 ( 95) CCCCAGTT 1 chr2L:838920-839040 ( 100) CCCCACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 2.1e+004 -1035 233 -1035 -1035 -1035 233 -1035 -1035 -1035 233 -1035 -1035 -1035 233 -1035 -1035 64 144 -1035 -1035 -1035 144 116 -1035 -1035 -1035 -1035 174 -1035 63 -1035 121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.307692 0.000000 0.692308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMSTT MEME-4 regular expression -------------------------------------------------------------------------------- CCCC[CA][CG]T[TC] -------------------------------------------------------------------------------- Time 25.76 secs. ******************************************************************************** ******************************************************************************** MOTIF KTBGCCVM MEME-5 width = 8 sites = 48 llr = 380 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::44 pos.-specific C ::3:aa34 probability G 5:4a::32 matrix T 5a3::::: bits 2.3 *** 2.1 *** 1.9 *** 1.6 * *** Relative 1.4 * *** Entropy 1.2 * *** (11.4 bits) 0.9 ** *** 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCCAC consensus G C GA sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11715709-11715829 71 4.24e-06 AAATAACCAT GTGGCCGC CAAGTGTTTA chr2R:12678667-12678787 90 2.06e-05 CGGTAGTCTA GTCGCCGC AATCACAGAT chrX:17581100-17581220 90 2.06e-05 TCCACTGTAG TTGGCCGC ACTTTGGTGT chr2R:23000087-23000207 67 4.54e-05 ATTCATTGAA TTGGCCAC TTCAGAACTG chr3L:12656202-12656322 32 4.54e-05 GTGTTTGCTC TTCGCCGC TATCTGAAGC chrX:2352925-2353045 55 4.54e-05 TCGTCGTAAT GTCGCCAC TGTCACTTGC chr2L:790088-790208 13 4.54e-05 AGCCCCCGTT TTCGCCGC CTCCACTCCT chr2L:496586-496706 103 6.16e-05 CCGTCTAGTG TTGGCCCC TTGATTTCAA chr3R:8981739-8981859 38 6.16e-05 GCTATATTCG GTGGCCGA TAGCTAGGTA chr2L:13511092-13511212 102 6.16e-05 GCAATTGTCT GTCGCCCC AAACAATACC chr2R:9609505-9609625 7 6.16e-05 TTGCTT TTGGCCCC GATTTCCGCC chr2L:5341324-5341444 90 1.00e-04 TCATTTAGTA GTGGCCAA TTGTAAACTA chr2R:7629853-7629973 72 1.00e-04 AAAGTATGTA TTGGCCGA AAACCACGTA chr2R:12947166-12947286 62 1.00e-04 AAGCCGAATT GTGGCCAA TTTAGACAAG chr3L:14222364-14222484 108 1.00e-04 AACTATACAC GTCGCCGA ACGAT chr3R:30390455-30390575 45 1.00e-04 AGTTAGCAAG TTCGCCCC AGCAAATGTA chr2R:22282498-22282618 9 1.43e-04 TCTACCCT TTGGCCAA CTCATCGCAT chr3R:9458833-9458953 94 1.43e-04 CACAGAACAG GTTGCCGC TGATAACGAG chr3R:9644719-9644839 54 1.43e-04 TAAGGGTCGA TTGGCCAA CTAATCAGTC chr3L:5349127-5349247 67 1.43e-04 ACTTTCGCTT GTCGCCAA GTGAAGAATA chr3L:16652659-16652779 51 1.43e-04 TGCAAATCAG TTGGCCAA CCTTATCGGT chr3L:14822298-14822418 97 1.43e-04 TCCGCCTATT TTGGCCAA Gacagctcag chr3L:22672040-22672160 25 1.43e-04 GTACAATGTT GTTGCCGC GTTCCACTTT chr3L:15978249-15978369 15 1.43e-04 CACGCCGGAG TTGGCCAA GAATGTGATT chr3R:19619952-19620072 28 1.43e-04 CGATCAGACT TTGGCCAA ACATCGTTCG chr3R:25308388-25308508 37 1.62e-04 TATACTAATA GTCGCCCA TGGCAAGTGC chr2R:23661236-23661356 36 1.62e-04 GCGATAGGCT GTCGCCCA ATCAGTTGGC chrX:6355237-6355357 55 1.93e-04 GCGTGACAAA TTTGCCGC TGAAGCACAT chr3R:7538613-7538733 75 1.93e-04 CAATGGTAAA TTTGCCGC ACATAAACAT chrX:11858543-11858663 22 1.93e-04 TTGCAGTTTG TTTGCCGC AAGTCGGTAG chr3R:31109212-31109332 36 1.93e-04 TTTGCTATCA GTTGCCAC CACGAGCGCT chr3R:23097531-23097651 31 1.93e-04 TAATGAACTA TTTGCCGC TTAGAAAAGT chr3R:12405285-12405405 109 1.93e-04 AACCAAGCAT TTCGCCAA TTAT chrX:6253018-6253138 110 2.24e-04 GCTCATTATC GTGGCCAG AAA chr2R:7639339-7639459 87 2.24e-04 CTTCTGCAAC GTGGCCAG TAATAATTGA chr2R:17100803-17100923 14 2.24e-04 TTAGCTATTA TTCGCCCA TAGCTTCGAT chr3L:12686249-12686369 58 2.24e-04 CACTTGGTTT TTCGCCCA TCTCCCCTGG chr2L:16799647-16799767 99 2.24e-04 GTATAAGATA GTCGCCGG CTGCTTGGAA chr3R:10055116-10055236 92 2.24e-04 ATTATAGCTT TTCGCCCA CTCAAGTGTT chr3R:23711359-23711479 92 2.24e-04 TTTACAAGGT GTTGCCCC GATTAGATAA chr3L:12679434-12679554 87 2.24e-04 ATCGTAATCG GTTGCCCC AGCAAAAAAA chr2R:18392969-18393089 106 2.41e-04 CCCAGTTATT GTGGCCCG CTCCTGG chr2L:7680455-7680575 55 2.41e-04 ATGTTTTTGA TTTGCCAC TGGGTTAATA chr2R:16592666-16592786 11 2.81e-04 GATTTTTCTG TTGGCCAG TTCGGTGCTT chr2L:20074491-20074611 54 2.81e-04 TCAATTCTCG GTCGCCAG TCAACATATT chr3L:12688881-12689001 11 2.81e-04 AACGTATCTT TTGGCCAG CTTTCGTATC chr3L:15268914-15269034 9 3.60e-04 CCCGTTTG TTTGCCAA CCTGAACATG chr2L:18630821-18630941 87 3.79e-04 TCCCACTTCC GTTGCCGG CCGACCGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11715709-11715829 4.2e-06 70_[+5]_42 chr2R:12678667-12678787 2.1e-05 89_[+5]_23 chrX:17581100-17581220 2.1e-05 89_[+5]_23 chr2R:23000087-23000207 4.5e-05 66_[+5]_46 chr3L:12656202-12656322 4.5e-05 31_[+5]_81 chrX:2352925-2353045 4.5e-05 54_[+5]_58 chr2L:790088-790208 4.5e-05 12_[+5]_100 chr2L:496586-496706 6.2e-05 102_[+5]_10 chr3R:8981739-8981859 6.2e-05 37_[+5]_75 chr2L:13511092-13511212 6.2e-05 101_[+5]_11 chr2R:9609505-9609625 6.2e-05 6_[+5]_106 chr2L:5341324-5341444 0.0001 89_[+5]_23 chr2R:7629853-7629973 0.0001 71_[+5]_41 chr2R:12947166-12947286 0.0001 61_[+5]_51 chr3L:14222364-14222484 0.0001 107_[+5]_5 chr3R:30390455-30390575 0.0001 44_[+5]_68 chr2R:22282498-22282618 0.00014 8_[+5]_104 chr3R:9458833-9458953 0.00014 93_[+5]_19 chr3R:9644719-9644839 0.00014 53_[+5]_59 chr3L:5349127-5349247 0.00014 66_[+5]_46 chr3L:16652659-16652779 0.00014 50_[+5]_62 chr3L:14822298-14822418 0.00014 96_[+5]_16 chr3L:22672040-22672160 0.00014 24_[+5]_88 chr3L:15978249-15978369 0.00014 14_[+5]_98 chr3R:19619952-19620072 0.00014 27_[+5]_85 chr3R:25308388-25308508 0.00016 36_[+5]_76 chr2R:23661236-23661356 0.00016 35_[+5]_77 chrX:6355237-6355357 0.00019 54_[+5]_58 chr3R:7538613-7538733 0.00019 74_[+5]_38 chrX:11858543-11858663 0.00019 21_[+5]_91 chr3R:31109212-31109332 0.00019 35_[+5]_77 chr3R:23097531-23097651 0.00019 30_[+5]_82 chr3R:12405285-12405405 0.00019 108_[+5]_4 chrX:6253018-6253138 0.00022 109_[+5]_3 chr2R:7639339-7639459 0.00022 86_[+5]_26 chr2R:17100803-17100923 0.00022 13_[+5]_99 chr3L:12686249-12686369 0.00022 57_[+5]_55 chr2L:16799647-16799767 0.00022 98_[+5]_14 chr3R:10055116-10055236 0.00022 91_[+5]_21 chr3R:23711359-23711479 0.00022 91_[+5]_21 chr3L:12679434-12679554 0.00022 86_[+5]_26 chr2R:18392969-18393089 0.00024 105_[+5]_7 chr2L:7680455-7680575 0.00024 54_[+5]_58 chr2R:16592666-16592786 0.00028 10_[+5]_102 chr2L:20074491-20074611 0.00028 53_[+5]_59 chr3L:12688881-12689001 0.00028 10_[+5]_102 chr3L:15268914-15269034 0.00036 8_[+5]_104 chr2L:18630821-18630941 0.00038 86_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTBGCCVM width=8 seqs=48 chr2R:11715709-11715829 ( 71) GTGGCCGC 1 chr2R:12678667-12678787 ( 90) GTCGCCGC 1 chrX:17581100-17581220 ( 90) TTGGCCGC 1 chr2R:23000087-23000207 ( 67) TTGGCCAC 1 chr3L:12656202-12656322 ( 32) TTCGCCGC 1 chrX:2352925-2353045 ( 55) GTCGCCAC 1 chr2L:790088-790208 ( 13) TTCGCCGC 1 chr2L:496586-496706 ( 103) TTGGCCCC 1 chr3R:8981739-8981859 ( 38) GTGGCCGA 1 chr2L:13511092-13511212 ( 102) GTCGCCCC 1 chr2R:9609505-9609625 ( 7) TTGGCCCC 1 chr2L:5341324-5341444 ( 90) GTGGCCAA 1 chr2R:7629853-7629973 ( 72) TTGGCCGA 1 chr2R:12947166-12947286 ( 62) GTGGCCAA 1 chr3L:14222364-14222484 ( 108) GTCGCCGA 1 chr3R:30390455-30390575 ( 45) TTCGCCCC 1 chr2R:22282498-22282618 ( 9) TTGGCCAA 1 chr3R:9458833-9458953 ( 94) GTTGCCGC 1 chr3R:9644719-9644839 ( 54) TTGGCCAA 1 chr3L:5349127-5349247 ( 67) GTCGCCAA 1 chr3L:16652659-16652779 ( 51) TTGGCCAA 1 chr3L:14822298-14822418 ( 97) TTGGCCAA 1 chr3L:22672040-22672160 ( 25) GTTGCCGC 1 chr3L:15978249-15978369 ( 15) TTGGCCAA 1 chr3R:19619952-19620072 ( 28) TTGGCCAA 1 chr3R:25308388-25308508 ( 37) GTCGCCCA 1 chr2R:23661236-23661356 ( 36) GTCGCCCA 1 chrX:6355237-6355357 ( 55) TTTGCCGC 1 chr3R:7538613-7538733 ( 75) TTTGCCGC 1 chrX:11858543-11858663 ( 22) TTTGCCGC 1 chr3R:31109212-31109332 ( 36) GTTGCCAC 1 chr3R:23097531-23097651 ( 31) TTTGCCGC 1 chr3R:12405285-12405405 ( 109) TTCGCCAA 1 chrX:6253018-6253138 ( 110) GTGGCCAG 1 chr2R:7639339-7639459 ( 87) GTGGCCAG 1 chr2R:17100803-17100923 ( 14) TTCGCCCA 1 chr3L:12686249-12686369 ( 58) TTCGCCCA 1 chr2L:16799647-16799767 ( 99) GTCGCCGG 1 chr3R:10055116-10055236 ( 92) TTCGCCCA 1 chr3R:23711359-23711479 ( 92) GTTGCCCC 1 chr3L:12679434-12679554 ( 87) GTTGCCCC 1 chr2R:18392969-18393089 ( 106) GTGGCCCG 1 chr2L:7680455-7680575 ( 55) TTTGCCAC 1 chr2R:16592666-16592786 ( 11) TTGGCCAG 1 chr2L:20074491-20074611 ( 54) GTCGCCAG 1 chr3L:12688881-12689001 ( 11) TTGGCCAG 1 chr3L:15268914-15269034 ( 9) TTTGCCAA 1 chr2L:18630821-18630941 ( 87) GTTGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2994 E= 1.2e+004 -1223 -1223 115 85 -1223 -1223 -1223 174 -1223 75 101 -26 -1223 -1223 228 -1223 -1223 233 -1223 -1223 -1223 233 -1223 -1223 50 33 69 -1223 42 114 -31 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.2e+004 0.000000 0.000000 0.458333 0.541667 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.416667 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.250000 0.333333 0.000000 0.395833 0.437500 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTBGCCVM MEME-5 regular expression -------------------------------------------------------------------------------- [TG]T[GCT]GCC[AGC][CA] -------------------------------------------------------------------------------- Time 31.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22249564-22249684 1.39e-02 50_[+3(3.50e-05)]_62 chr3L:12695039-12695159 1.58e-01 84_[+1(7.50e-05)]_28 chr3R:25260787-25260907 2.75e-01 120 chrX:10841347-10841467 8.93e-02 111_[+3(3.50e-05)]_1 chr3R:17008754-17008874 6.00e-01 120 chr2L:18605678-18605798 9.82e-01 120 chr2L:21189511-21189631 7.10e-02 120 chr3R:30390455-30390575 6.87e-03 120 chr3R:16173655-16173775 3.40e-01 120 chr3L:12704449-12704569 1.12e-02 120 chrX:13313250-13313370 3.00e-02 120 chr2R:9135998-9136118 7.95e-03 11_[+1(3.24e-05)]_32_[+3(8.02e-05)]_\ 61 chr2R:22245406-22245526 1.69e-01 120 chr3L:12679434-12679554 4.91e-02 120 chr2L:8703083-8703203 7.41e-01 120 chr3R:23711359-23711479 1.53e-03 120 chr3L:12674644-12674764 5.94e-01 120 chr2L:1707098-1707218 3.88e-01 120 chr3L:12695840-12695960 2.59e-02 36_[+4(2.71e-05)]_76 chr3L:6234200-6234320 8.99e-01 120 chr2L:5790908-5791028 9.32e-02 7_[+1(7.50e-05)]_105 chr3L:12688881-12689001 1.60e-01 120 chr2L:7680455-7680575 9.40e-02 120 chrX:17581100-17581220 9.90e-03 89_[+5(2.06e-05)]_23 chr3L:12705859-12705979 1.74e-01 120 chr3L:11183150-11183270 8.48e-01 120 chrX:13308131-13308251 7.66e-02 93_[+2(8.46e-05)]_19 chr3R:4446584-4446704 6.80e-03 79_[+2(6.55e-05)]_33 chr3R:10055116-10055236 9.76e-02 120 chr2L:16799647-16799767 2.11e-03 51_[+2(2.77e-05)]_61 chr2R:9744682-9744802 2.27e-02 110_[+2(4.62e-05)]_2 chr2L:12708699-12708819 3.62e-01 120 chr2R:11790802-11790922 4.49e-01 120 chr3L:12690454-12690574 7.91e-01 120 chr2R:24071313-24071433 1.27e-01 120 chr3L:15692507-15692627 4.82e-02 6_[+1(7.50e-05)]_106 chr3L:8948279-8948399 3.30e-01 120 chr2L:16882957-16883077 1.40e-01 60_[+2(4.62e-05)]_52 chr3R:12211712-12211832 5.96e-03 75_[+2(6.55e-05)]_37 chr2L:2472854-2472974 9.16e-01 120 chr2R:17711865-17711985 2.43e-01 120 chr3R:24353606-24353726 6.40e-01 120 chr3L:11071167-11071287 1.94e-01 120 chr3L:1969129-1969249 2.41e-02 3_[+4(9.65e-05)]_109 chrX:2787969-2788089 3.32e-03 6_[+1(1.94e-05)]_106 chr2R:9609505-9609625 2.49e-03 6_[+5(6.16e-05)]_106 chr2R:19690620-19690740 8.47e-02 120 chr3L:7944216-7944336 2.60e-01 120 chr3L:20210022-20210142 2.17e-01 120 chr3R:11177741-11177861 3.93e-01 120 chr2R:17086538-17086658 3.79e-01 120 chr3R:9892309-9892429 5.36e-01 120 chr3L:8707226-8707346 6.69e-02 120 chr2L:14656278-14656398 1.96e-01 120 chr2R:13290108-13290228 9.98e-02 3_[+2(2.77e-05)]_109 chr3R:12405285-12405405 1.89e-03 68_[+1(1.94e-05)]_44 chrX:503625-503745 8.84e-01 120 chr3R:19619952-19620072 6.95e-03 120 chrX:6064670-6064790 2.28e-01 120 chr3R:22412327-22412447 2.35e-01 120 chr2L:18985572-18985692 1.72e-01 10_[+2(2.77e-05)]_102 chr2L:3299280-3299400 2.14e-01 120 chr2L:3307831-3307951 4.01e-01 120 chr3R:18783318-18783438 2.63e-02 94_[+2(8.46e-05)]_18 chr2L:21109841-21109961 4.20e-01 120 chr2L:20397151-20397271 4.56e-01 120 chr2R:6031007-6031127 9.18e-01 120 chr3R:16275507-16275627 2.38e-02 101_[+1(1.94e-05)]_11 chr2L:6089758-6089878 2.16e-01 79_[+2(6.55e-05)]_33 chr3R:23177602-23177722 4.33e-01 120 chr3R:26465259-26465379 1.24e-02 16_[+3(3.50e-05)]_87_[+1(4.59e-05)]_\ 1 chr3L:12902645-12902765 2.02e-01 120 chr3L:15978249-15978369 1.33e-02 34_[+2(6.55e-05)]_78 chr3R:15694511-15694631 9.90e-02 60_[+1(1.94e-05)]_52 chr2L:19097494-19097614 9.75e-03 120 chr2R:23661236-23661356 8.64e-03 120 chrX:6259850-6259970 8.53e-01 120 chr2R:11598816-11598936 7.67e-01 120 chr2L:19098890-19099010 2.11e-01 92_[+1(9.46e-05)]_20 chr3L:12686249-12686369 6.09e-03 44_[+4(2.71e-05)]_68 chr2R:14187254-14187374 5.28e-01 120 chr3L:18015697-18015817 7.34e-01 120 chr3L:1653879-1653999 1.47e-01 120 chrX:8884607-8884727 5.22e-01 120 chr2L:497796-497916 1.74e-01 120 chr2L:12720649-12720769 7.50e-03 77_[+3(8.96e-05)]_18_[+3(4.40e-05)]_\ 9 chr2R:15323221-15323341 5.74e-01 120 chr2R:22281954-22282074 2.73e-03 [+4(1.50e-05)]_59_[+1(9.46e-05)]_45 chr3R:10566546-10566666 2.55e-01 120 chr3L:19014920-19015040 3.84e-01 120 chr3L:9500354-9500474 3.80e-03 59_[+1(1.94e-05)]_53 chr2L:7216428-7216548 6.87e-01 120 chr3R:23097531-23097651 6.78e-02 120 chr2L:4339899-4340019 6.90e-01 120 chr2R:18018106-18018226 2.19e-02 51_[+2(8.46e-05)]_61 chr2L:16255337-16255457 2.08e-01 89_[+1(7.50e-05)]_23 chr2R:9300049-9300169 3.17e-01 120 chr2L:10701643-10701763 3.97e-01 120 chr2R:8912361-8912481 2.60e-01 72_[+1(9.46e-05)]_40 chr2R:13296967-13297087 2.11e-01 120 chr3R:14695812-14695932 3.26e-02 120 chr3L:338267-338387 3.32e-04 69_[+1(1.94e-05)]_6_[+3(8.02e-05)]_\ 29 chr2L:14498799-14498919 6.93e-01 120 chr2R:12263365-12263485 1.43e-02 120 chr2L:790088-790208 2.88e-03 4_[+4(1.13e-05)]_[+5(4.54e-05)]_100 chr2R:24140256-24140376 2.29e-03 97_[+2(4.62e-05)]_15 chr3R:5836675-5836795 4.47e-01 120 chr3R:18782573-18782693 5.69e-01 120 chrX:2352925-2353045 2.81e-02 54_[+5(4.54e-05)]_58 chr2L:19164076-19164196 8.86e-02 120 chr2L:20074491-20074611 5.25e-03 105_[+1(9.46e-05)]_7 chr3L:14222364-14222484 1.18e-02 120 chr3L:7376296-7376416 1.49e-01 120 chr2L:8946813-8946933 7.43e-02 2_[+2(2.77e-05)]_110 chr2L:8129365-8129485 4.79e-01 120 chr2R:12438513-12438633 1.92e-01 120 chr3R:31109212-31109332 4.06e-03 59_[+4(1.13e-05)]_53 chr2R:9411070-9411190 1.33e-02 55_[+2(6.55e-05)]_57 chr2L:7789111-7789231 8.17e-01 120 chrX:16922726-16922846 7.43e-02 44_[+1(9.46e-05)]_68 chr3L:4130887-4131007 2.47e-01 120 chr3R:25308388-25308508 2.62e-01 120 chrX:6708766-6708886 8.73e-02 98_[+4(1.13e-05)]_14 chr3L:852430-852550 2.22e-01 120 chr3L:11290471-11290591 1.06e-01 120 chr2R:12947166-12947286 3.27e-02 120 chr2R:6247987-6248107 1.87e-01 120 chr2L:13376233-13376353 1.72e-01 65_[+2(8.46e-05)]_47 chr3R:11175937-11176057 4.75e-01 120 chr2L:1912626-1912746 1.66e-01 108_[+1(9.46e-05)]_4 chr2R:8675367-8675487 8.10e-01 120 chr2R:7014477-7014597 1.53e-01 120 chr3L:22672040-22672160 2.13e-01 120 chr3L:12656202-12656322 1.70e-01 31_[+5(4.54e-05)]_81 chr2L:17420637-17420757 7.11e-03 [+1(1.94e-05)]_112 chrX:18094218-18094338 1.23e-01 120 chr3R:18991850-18991970 1.28e-01 120 chr3L:14822298-14822418 1.83e-01 120 chr3L:15518474-15518594 9.43e-02 120 chr3L:9674494-9674614 1.99e-01 60_[+1(1.94e-05)]_52 chr3R:25659002-25659122 4.68e-01 120 chr2R:19617811-19617931 6.60e-01 120 chr3L:16652659-16652779 9.43e-04 32_[+3(3.50e-05)]_80 chr2R:11715709-11715829 1.65e-02 70_[+5(4.24e-06)]_42 chr3L:12667630-12667750 9.88e-01 120 chr3L:7376954-7377074 2.25e-01 120 chr3L:22458484-22458604 4.49e-01 120 chr2R:19370933-19371053 8.37e-01 120 chr2L:18630821-18630941 3.10e-02 120 chr2R:18392969-18393089 4.82e-04 10_[+3(8.02e-05)]_76_[+4(3.56e-05)]_\ 18 chrX:8885345-8885465 3.89e-03 97_[+3(3.50e-05)]_15 chrX:8496516-8496636 9.09e-01 120 chr2R:22246399-22246519 5.65e-02 120 chrX:1173159-1173279 2.61e-01 120 chr2L:19002589-19002709 3.04e-02 74_[+1(4.59e-05)]_38 chr3R:8519267-8519387 5.93e-02 98_[+2(2.77e-05)]_14 chr3R:18445583-18445703 6.76e-01 120 chr2R:22999258-22999378 2.34e-02 18_[+4(3.56e-05)]_94 chr3R:21268106-21268226 5.42e-03 11_[+2(2.77e-05)]_101 chr2L:7572270-7572390 4.02e-01 120 chr2L:13511092-13511212 1.12e-03 101_[+5(6.16e-05)]_11 chr3R:22495043-22495163 9.96e-01 120 chr3L:4099351-4099471 3.89e-01 120 chr2L:21053716-21053836 2.40e-02 106_[+2(8.46e-05)]_6 chr2R:12165651-12165771 3.05e-01 120 chr2R:7629853-7629973 3.33e-02 120 chr2R:7026728-7026848 2.09e-01 85_[+2(2.77e-05)]_27 chrX:15888905-15889025 8.47e-02 61_[+1(9.46e-05)]_51 chr2L:2039497-2039617 2.26e-01 120 chrX:16404943-16405063 9.50e-02 112_[+1(1.94e-05)] chrX:19239509-19239629 4.83e-03 92_[+3(1.30e-05)]_20 chrX:11858543-11858663 6.57e-04 89_[+2(6.55e-05)]_23 chrX:1562901-1563021 6.72e-01 120 chr2R:19125014-19125134 3.35e-01 120 chr2R:17100803-17100923 1.90e-01 120 chr3L:15268914-15269034 2.19e-01 120 chr3R:7538613-7538733 2.85e-02 21_[+2(8.46e-05)]_91 chrX:6355237-6355357 2.45e-04 15_[+4(2.71e-05)]_15_[+1(9.46e-05)]_\ 74 chr2R:12678667-12678787 9.57e-04 89_[+5(2.06e-05)]_11_[+1(1.94e-05)]_\ 4 chrX:16693552-16693672 1.75e-01 120 chrX:19752444-19752564 4.66e-02 120 chr2L:17390945-17391065 6.83e-02 120 chr3R:30009324-30009444 2.74e-02 10_[+1(1.94e-05)]_102 chr2R:16592666-16592786 5.59e-02 120 chr2R:7639339-7639459 4.43e-03 14_[+2(2.77e-05)]_98 chr3L:5349127-5349247 8.06e-03 85_[+1(7.50e-05)]_27 chr3R:11810957-11811077 1.56e-03 [+1(1.94e-05)]_20_[+3(4.40e-05)]_84 chr2R:16140051-16140171 7.72e-03 103_[+3(1.30e-05)]_9 chr3R:9644719-9644839 6.13e-04 7_[+3(5.75e-05)]_25_[+1(4.59e-05)]_\ 72 chr3L:17549210-17549330 3.07e-01 120 chr2L:18781059-18781179 8.60e-01 120 chr2R:23149529-23149649 7.04e-02 120 chr3L:7132718-7132838 3.66e-01 120 chr2L:163397-163517 3.02e-02 51_[+3(1.30e-05)]_61 chr2R:14266772-14266892 2.41e-01 120 chr2R:15557633-15557753 1.19e-01 120 chr3L:7128521-7128641 1.92e-01 120 chr3L:21282902-21283022 2.65e-02 29_[+2(8.46e-05)]_83 chrX:19247822-19247942 3.00e-02 32_[+3(1.30e-05)]_80 chr2R:14260035-14260155 4.78e-01 120 chr3R:9458833-9458953 3.43e-02 120 chr3L:16984905-16985025 1.33e-04 29_[+4(2.71e-05)]_53_[+1(7.50e-05)]_\ 22 chr3L:18237913-18238033 5.58e-01 120 chr2L:20325514-20325634 6.94e-01 120 chr3L:20199985-20200105 2.61e-01 51_[+1(7.50e-05)]_61 chr3L:2402393-2402513 1.44e-01 48_[+2(2.77e-05)]_64 chrX:3875102-3875222 2.20e-01 120 chr3R:13365825-13365945 1.85e-02 120 chrX:21337255-21337375 9.45e-01 120 chrX:1848942-1849062 5.09e-01 120 chr3L:7344187-7344307 2.77e-01 120 chrX:8413853-8413973 4.86e-02 111_[+1(3.24e-05)]_1 chr3R:8981739-8981859 3.95e-02 37_[+5(6.16e-05)]_75 chr2L:82200-82320 5.58e-02 107_[+1(1.94e-05)]_5 chr2R:12166401-12166521 2.43e-02 35_[+3(8.02e-05)]_77 chr3R:14032931-14033051 1.28e-01 120 chr2R:19358817-19358937 2.08e-03 18_[+3(3.50e-05)]_11_[+1(1.94e-05)]_\ 75 chr3R:21182064-21182184 1.15e-03 47_[+1(3.24e-05)]_65 chr3R:20006740-20006860 9.64e-02 120 chr2R:14875667-14875787 2.41e-01 120 chr2L:496586-496706 1.41e-02 102_[+5(6.16e-05)]_10 chr3L:20747426-20747546 1.72e-01 120 chr3L:12675819-12675939 7.61e-03 42_[+3(1.30e-05)]_70 chr2R:19373786-19373906 6.87e-02 [+2(8.46e-05)]_112 chrX:3357060-3357180 2.54e-02 106_[+4(1.50e-05)]_6 chr3R:5654049-5654169 1.15e-01 8_[+2(4.62e-05)]_104 chr3R:26570486-26570606 1.31e-02 105_[+4(5.55e-06)]_7 chr2L:18787850-18787970 1.40e-01 120 chr3R:19065590-19065710 1.15e-01 64_[+2(8.46e-05)]_48 chr3R:25543667-25543787 3.55e-01 120 chr2L:5341324-5341444 2.00e-02 120 chr2R:23000087-23000207 2.83e-03 66_[+5(4.54e-05)]_46 chrX:1120562-1120682 4.20e-01 120 chr3R:30453357-30453477 2.25e-01 120 chr3R:23534801-23534921 7.35e-01 120 chr2R:22282498-22282618 3.07e-02 120 chr3R:25756238-25756358 1.12e-02 13_[+1(9.46e-05)]_[+2(4.62e-05)]_91 chr2L:3123698-3123818 1.46e-01 66_[+1(7.50e-05)]_8_[+1(9.46e-05)]_\ 19_[+1(1.94e-05)]_3 chr2L:838920-839040 1.09e-01 99_[+4(4.11e-05)]_13 chrX:23073514-23073634 4.24e-02 104_[+3(1.30e-05)]_8 chrX:6253018-6253138 1.55e-01 120 chr3R:27568665-27568785 2.62e-01 120 chr3L:18792108-18792228 3.78e-02 85_[+1(3.24e-05)]_27 chr2L:8496404-8496524 7.52e-01 120 chr3L:11777576-11777696 3.42e-01 120 chr2L:10701842-10701962 8.85e-02 14_[+2(2.77e-05)]_98 chr3R:6810006-6810126 1.60e-02 64_[+1(1.94e-05)]_48 chr2L:4332681-4332801 1.37e-01 71_[+3(5.75e-05)]_41 chrX:1346378-1346498 8.13e-03 78_[+2(6.55e-05)]_34 chr2L:19106380-19106500 8.31e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************