******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/mam.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:10013328-10013448 1.0000 120 chr3R:8811008-8811128 1.0000 120 chr2R:20641606-20641726 1.0000 120 chrX:3950275-3950395 1.0000 120 chr2R:21091955-21092075 1.0000 120 chr2R:14934068-14934188 1.0000 120 chr2R:18774900-18775020 1.0000 120 chr3R:30013253-30013373 1.0000 120 chr3R:8930291-8930411 1.0000 120 chr3R:27938374-27938494 1.0000 120 chr3L:4445996-4446116 1.0000 120 chrX:19964314-19964434 1.0000 120 chr2L:4861604-4861724 1.0000 120 chrX:6179554-6179674 1.0000 120 chr3L:1940950-1941070 1.0000 120 chrX:4113736-4113856 1.0000 120 chr2L:12529139-12529259 1.0000 120 chrX:8233346-8233466 1.0000 120 chr2L:1043697-1043817 1.0000 120 chr3L:2913438-2913558 1.0000 120 chrX:8273884-8274004 1.0000 120 chr3L:5819411-5819531 1.0000 120 chr2R:22640224-22640344 1.0000 120 chr3R:26952336-26952456 1.0000 120 chr3R:26494385-26494505 1.0000 120 chrX:18320229-18320349 1.0000 120 chr2R:16856130-16856250 1.0000 120 chr2R:20994785-20994905 1.0000 120 chr3L:7866753-7866873 1.0000 120 chr2R:23202130-23202250 1.0000 120 chr3L:1195963-1196083 1.0000 120 chr2L:1145083-1145203 1.0000 120 chrX:20423818-20423938 1.0000 120 chrX:16105824-16105944 1.0000 120 chr3L:3760721-3760841 1.0000 120 chr2R:21640792-21640912 1.0000 120 chrX:5671817-5671937 1.0000 120 chrX:17465644-17465764 1.0000 120 chr3R:30550155-30550275 1.0000 120 chr2R:24411760-24411880 1.0000 120 chr3R:16655831-16655951 1.0000 120 chr3L:1139523-1139643 1.0000 120 chr2R:22976664-22976784 1.0000 120 chr3R:27289781-27289901 1.0000 120 chr2R:18451120-18451240 1.0000 120 chr2R:24629514-24629634 1.0000 120 chr3R:24100847-24100967 1.0000 120 chr2R:7636708-7636828 1.0000 120 chrX:5745151-5745271 1.0000 120 chr3L:6086197-6086317 1.0000 120 chr3L:22276142-22276262 1.0000 120 chrX:8536782-8536902 1.0000 120 chr2R:11044484-11044604 1.0000 120 chr2L:9494853-9494973 1.0000 120 chr2R:21313171-21313291 1.0000 120 chr2L:10231282-10231402 1.0000 120 chr2L:8894340-8894460 1.0000 120 chrX:18516204-18516324 1.0000 120 chr3R:27557154-27557274 1.0000 120 chr2R:24293575-24293695 1.0000 120 chr2R:10160284-10160404 1.0000 120 chrX:8720277-8720397 1.0000 120 chr2R:21895093-21895213 1.0000 120 chr2R:24292878-24292998 1.0000 120 chrX:15319363-15319483 1.0000 120 chr3L:11402435-11402555 1.0000 120 chr3L:4413191-4413311 1.0000 120 chr3R:10024142-10024262 1.0000 120 chr3R:18914673-18914793 1.0000 120 chrX:15120206-15120326 1.0000 120 chr3L:1151785-1151905 1.0000 120 chr3R:8784934-8785054 1.0000 120 chr2L:2873487-2873607 1.0000 120 chrX:18899979-18900099 1.0000 120 chr2L:3058889-3059009 1.0000 120 chr3R:26235198-26235318 1.0000 120 chr3L:17009772-17009892 1.0000 120 chr3R:23941762-23941882 1.0000 120 chrX:10600646-10600766 1.0000 120 chr3L:13964693-13964813 1.0000 120 chr3L:7861184-7861304 1.0000 120 chr2R:9388606-9388726 1.0000 120 chr3R:8524429-8524549 1.0000 120 chr3L:13015306-13015426 1.0000 120 chr2R:24197687-24197807 1.0000 120 chr3R:13382988-13383108 1.0000 120 chr3L:16582913-16583033 1.0000 120 chr3R:15963828-15963948 1.0000 120 chr3L:11785461-11785581 1.0000 120 chrX:19665950-19666070 1.0000 120 chrX:8141434-8141554 1.0000 120 chr3L:3970522-3970642 1.0000 120 chr3L:2377524-2377644 1.0000 120 chr2L:20734279-20734399 1.0000 120 chr2R:17420070-17420190 1.0000 120 chr3R:7821754-7821874 1.0000 120 chr3R:23228761-23228881 1.0000 120 chrX:18366693-18366813 1.0000 120 chrX:8677575-8677695 1.0000 120 chr2L:937040-937160 1.0000 120 chrX:13253222-13253342 1.0000 120 chrX:11379278-11379398 1.0000 120 chrX:10474632-10474752 1.0000 120 chrX:4540731-4540851 1.0000 120 chr2L:9938095-9938215 1.0000 120 chr3L:1609816-1609936 1.0000 120 chrX:11715452-11715572 1.0000 120 chrX:6973445-6973565 1.0000 120 chr2R:17698940-17699060 1.0000 120 chrX:16102476-16102596 1.0000 120 chr3R:13840143-13840263 1.0000 120 chrX:16650577-16650697 1.0000 120 chr2L:9943656-9943776 1.0000 120 chr3R:25215197-25215317 1.0000 120 chrX:7703122-7703242 1.0000 120 chr2R:16849574-16849694 1.0000 120 chr3R:11243265-11243385 1.0000 120 chr2R:23668845-23668965 1.0000 120 chr3R:16704429-16704549 1.0000 120 chr3R:11735473-11735593 1.0000 120 chrX:18494342-18494462 1.0000 120 chr2L:18707966-18708086 1.0000 120 chr2L:10736117-10736237 1.0000 120 chr3R:10411861-10411981 1.0000 120 chr3L:10866795-10866915 1.0000 120 chr3R:21993023-21993143 1.0000 120 chr3L:10362718-10362838 1.0000 120 chrX:19521894-19522014 1.0000 120 chr2L:4224220-4224340 1.0000 120 chr2R:16660214-16660334 1.0000 120 chr2L:1158257-1158377 1.0000 120 chr2L:7702581-7702701 1.0000 120 chr3R:8033104-8033224 1.0000 120 chr3R:8564002-8564122 1.0000 120 chr2L:11203728-11203848 1.0000 120 chr3L:4521862-4521982 1.0000 120 chrX:16103599-16103719 1.0000 120 chr2R:13999243-13999363 1.0000 120 chr3L:8029510-8029630 1.0000 120 chrX:17330397-17330517 1.0000 120 chr2R:18277164-18277284 1.0000 120 chr2L:18377224-18377344 1.0000 120 chr2R:7077021-7077141 1.0000 120 chr3L:1568990-1569110 1.0000 120 chr3R:16355538-16355658 1.0000 120 chr4:1030982-1031102 1.0000 120 chr2R:17160980-17161100 1.0000 120 chr2R:9544874-9544994 1.0000 120 chr3R:7920305-7920425 1.0000 120 chr2R:21712036-21712156 1.0000 120 chrX:11137692-11137812 1.0000 120 chrX:15739061-15739181 1.0000 120 chrX:10086309-10086429 1.0000 120 chrX:9120920-9121040 1.0000 120 chr3L:13486681-13486801 1.0000 120 chr3L:5603999-5604119 1.0000 120 chr2R:23818413-23818533 1.0000 120 chr2L:22130003-22130123 1.0000 120 chr2R:6652876-6652996 1.0000 120 chrX:13333048-13333168 1.0000 120 chr3R:31060365-31060485 1.0000 120 chr3R:29068902-29069022 1.0000 120 chr2R:19127921-19128041 1.0000 120 chr2L:21156208-21156328 1.0000 120 chrX:6375787-6375907 1.0000 120 chr2R:6781894-6782014 1.0000 120 chrX:5420894-5421014 1.0000 120 chr3L:1618277-1618397 1.0000 120 chr2L:6956891-6957011 1.0000 120 chrX:5923308-5923428 1.0000 120 chr2L:14094781-14094901 1.0000 120 chr2R:8002252-8002372 1.0000 120 chr2R:14576062-14576182 1.0000 120 chrX:5665923-5666043 1.0000 120 chr3L:12116009-12116129 1.0000 120 chr2L:18688840-18688960 1.0000 120 chr2L:7412298-7412418 1.0000 120 chr2L:20881475-20881595 1.0000 120 chr3R:25027632-25027752 1.0000 120 chr2R:9847798-9847918 1.0000 120 chrX:15910118-15910238 1.0000 120 chr2L:15629912-15630032 1.0000 120 chr2R:24086532-24086652 1.0000 120 chrX:3968832-3968952 1.0000 120 chr2R:7916569-7916689 1.0000 120 chr2R:18994114-18994234 1.0000 120 chr3R:7092122-7092242 1.0000 120 chr2L:10488628-10488748 1.0000 120 chr3R:22628066-22628186 1.0000 120 chr2R:7939114-7939234 1.0000 120 chr3R:18366498-18366618 1.0000 120 chrX:18900178-18900298 1.0000 120 chrX:10184836-10184956 1.0000 120 chr3R:27988941-27989061 1.0000 120 chr3L:13929286-13929406 1.0000 120 chrX:1478420-1478540 1.0000 120 chr3R:10139799-10139919 1.0000 120 chr3R:30812623-30812743 1.0000 120 chr3R:27273620-27273740 1.0000 120 chr3L:15832289-15832409 1.0000 120 chr3L:9614097-9614217 1.0000 120 chr3L:12803812-12803932 1.0000 120 chr2L:3042248-3042368 1.0000 120 chr3R:26172148-26172268 1.0000 120 chr2R:9103140-9103260 1.0000 120 chr3R:14741486-14741606 1.0000 120 chrX:9193767-9193887 1.0000 120 chr3R:10161297-10161417 1.0000 120 chr3R:20555177-20555297 1.0000 120 chr3R:18215469-18215589 1.0000 120 chr2L:7204264-7204384 1.0000 120 chrX:17887254-17887374 1.0000 120 chr2R:4012728-4012848 1.0000 120 chrX:4262777-4262897 1.0000 120 chrX:20511567-20511687 1.0000 120 chr2L:6047913-6048033 1.0000 120 chr2L:10565832-10565952 1.0000 120 chr3R:23760564-23760684 1.0000 120 chr3L:10694040-10694160 1.0000 120 chr2L:20918852-20918972 1.0000 120 chr3L:3197596-3197716 1.0000 120 chr2R:24265287-24265407 1.0000 120 chr2R:13261814-13261934 1.0000 120 chr2L:2729982-2730102 1.0000 120 chrX:16683928-16684048 1.0000 120 chrX:4366294-4366414 1.0000 120 chr2R:16170838-16170958 1.0000 120 chr3R:31793760-31793880 1.0000 120 chr3L:21821827-21821947 1.0000 120 chr3R:5588301-5588421 1.0000 120 chr2R:13008284-13008404 1.0000 120 chr2R:21060538-21060658 1.0000 120 chrX:1380449-1380569 1.0000 120 chr3L:21445747-21445867 1.0000 120 chr3L:8110329-8110449 1.0000 120 chr2L:1628320-1628440 1.0000 120 chr2L:10428671-10428791 1.0000 120 chr2R:13054932-13055052 1.0000 120 chr3R:22041767-22041887 1.0000 120 chr2R:23383473-23383593 1.0000 120 chr3L:15565910-15566030 1.0000 120 chr3R:23028671-23028791 1.0000 120 chr3R:10696529-10696649 1.0000 120 chr2L:3477387-3477507 1.0000 120 chrX:18635425-18635545 1.0000 120 chr3R:22121371-22121491 1.0000 120 chr2L:15751128-15751248 1.0000 120 chr2R:14411708-14411828 1.0000 120 chr3L:9402416-9402536 1.0000 120 chr3R:28599645-28599765 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_mam/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/mam.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.31 C 0.189 G 0.187 T 0.314 Background letter frequencies (from file dataset with add-one prior applied): A 0.31 C 0.189 G 0.187 T 0.314 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGTTGCC MEME-1 width = 8 sites = 18 llr = 182 E-value = 3.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :11::::: pos.-specific C 191:11aa probability G 918:19:: matrix T :::a8::: bits 2.4 ** 2.2 ** 1.9 * *** 1.7 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (14.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1380449-1380569 68 4.35e-06 CACTGGCTCG GCGTTGCC ACCTCGCGGG chrX:5420894-5421014 46 4.35e-06 TTCTTAGGCG GCGTTGCC ACCGAATGTG chrX:10474632-10474752 25 4.35e-06 TTTACGGCAA GCGTTGCC AGAGTTGTGT chr2L:20734279-20734399 8 4.35e-06 TGTAGCA GCGTTGCC ACCTAGTACA chr3L:2377524-2377644 10 4.35e-06 TTCTGTCTG GCGTTGCC AAGCTGGGCC chr3L:1940950-1941070 46 4.35e-06 TTGTTCGATA GCGTTGCC ACTCTGGTTT chrX:8141434-8141554 11 6.97e-06 AAAAACATGA GCGTCGCC GGCAAGAGGG chrX:5745151-5745271 18 6.97e-06 CGCTCTGCTG GCGTCGCC TAGAGATGGC chr3L:4521862-4521982 110 1.14e-05 ATAATTCTTG GCCTTGCC ATC chrX:5671817-5671937 16 1.14e-05 TGTAACAGCA GCCTTGCC AGACCGCCAC chr3L:9402416-9402536 20 2.02e-05 GACAGTGTGG CCGTTGCC TAAAGGAAAG chrX:1478420-1478540 90 2.02e-05 TTCAAAAAGT GCGTTCCC ACCGCCACGG chr3R:13382988-13383108 10 2.02e-05 TACTATTTT CCGTTGCC CCCCAAATTA chr3L:22276142-22276262 38 2.02e-05 CTCACTATTC GCGTTCCC ACTGTGCGGG chr3L:8110329-8110449 32 2.28e-05 TGTGAAGCGC GCGTGGCC ACAGAGCTCG chr2R:7939114-7939234 30 2.71e-05 ATGCCTGGCA GGGTTGCC AGCTCACTGC chrX:18900178-18900298 84 3.43e-05 TGTAGTGAGC GCATTGCC ACGTGCGGAG chr3R:7092122-7092242 56 4.14e-05 TTTTACACCA GAGTTGCC AGGTAACAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1380449-1380569 4.4e-06 67_[+1]_45 chrX:5420894-5421014 4.4e-06 45_[+1]_67 chrX:10474632-10474752 4.4e-06 24_[+1]_88 chr2L:20734279-20734399 4.4e-06 7_[+1]_105 chr3L:2377524-2377644 4.4e-06 9_[+1]_103 chr3L:1940950-1941070 4.4e-06 45_[+1]_67 chrX:8141434-8141554 7e-06 10_[+1]_102 chrX:5745151-5745271 7e-06 17_[+1]_95 chr3L:4521862-4521982 1.1e-05 109_[+1]_3 chrX:5671817-5671937 1.1e-05 15_[+1]_97 chr3L:9402416-9402536 2e-05 19_[+1]_93 chrX:1478420-1478540 2e-05 89_[+1]_23 chr3R:13382988-13383108 2e-05 9_[+1]_103 chr3L:22276142-22276262 2e-05 37_[+1]_75 chr3L:8110329-8110449 2.3e-05 31_[+1]_81 chr2R:7939114-7939234 2.7e-05 29_[+1]_83 chrX:18900178-18900298 3.4e-05 83_[+1]_29 chr3R:7092122-7092242 4.1e-05 55_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTTGCC width=8 seqs=18 chrX:1380449-1380569 ( 68) GCGTTGCC 1 chrX:5420894-5421014 ( 46) GCGTTGCC 1 chrX:10474632-10474752 ( 25) GCGTTGCC 1 chr2L:20734279-20734399 ( 8) GCGTTGCC 1 chr3L:2377524-2377644 ( 10) GCGTTGCC 1 chr3L:1940950-1941070 ( 46) GCGTTGCC 1 chrX:8141434-8141554 ( 11) GCGTCGCC 1 chrX:5745151-5745271 ( 18) GCGTCGCC 1 chr3L:4521862-4521982 ( 110) GCCTTGCC 1 chrX:5671817-5671937 ( 16) GCCTTGCC 1 chr3L:9402416-9402536 ( 20) CCGTTGCC 1 chrX:1478420-1478540 ( 90) GCGTTCCC 1 chr3R:13382988-13383108 ( 10) CCGTTGCC 1 chr3L:22276142-22276262 ( 38) GCGTTCCC 1 chr3L:8110329-8110449 ( 32) GCGTGGCC 1 chr2R:7939114-7939234 ( 30) GGGTTGCC 1 chrX:18900178-18900298 ( 84) GCATTGCC 1 chr3R:7092122-7092242 ( 56) GAGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 3.7e-002 -1081 -76 224 -1081 -247 223 -175 -1081 -247 -76 215 -1081 -1081 -1081 -1081 167 -1081 -76 -175 141 -1081 -76 224 -1081 -1081 240 -1081 -1081 -1081 240 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.7e-002 0.000000 0.111111 0.888889 0.000000 0.055556 0.888889 0.055556 0.000000 0.055556 0.111111 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.055556 0.833333 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-1 regular expression -------------------------------------------------------------------------------- GCGTTGCC -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CAVCMCTG MEME-2 width = 8 sites = 25 llr = 234 E-value = 4.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :84:5::: pos.-specific C a:3a3a:: probability G :23:2::a matrix T ::::::a: bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 * * *** Relative 1.4 * * *** Entropy 1.2 * * *** (13.5 bits) 1.0 ** * *** 0.7 ** * *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus GC C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15565910-15566030 59 2.31e-05 ATTGGAGTGC CACCACTG CCGTGATTCG chr2R:24265287-24265407 57 2.31e-05 CGCTGTTTTA CAGCACTG TTTTTAACAG chr3R:23760564-23760684 21 2.31e-05 AAAAATTACA CAGCACTG GGCTAGTGCA chr3R:10161297-10161417 9 2.31e-05 TTGATTAA CAGCCCTG CCTTGCAAAA chr3R:18366498-18366618 84 2.31e-05 CTTTTGTTTC CAGCCCTG CCCAATTTAT chr2R:23818413-23818533 56 2.31e-05 AGCCGACTTG CAGCACTG GCCTTTGGAA chr2L:18707966-18708086 69 2.31e-05 TTCTTGCAGC CACCACTG TATGCAAGAC chr3L:16582913-16583033 37 2.31e-05 ATAATATTCC CAGCCCTG TGGTAACTTG chr2R:20994785-20994905 88 2.31e-05 ATCTAGTTTG CAGCCCTG GTACCGCTTT chr3L:8110329-8110449 51 4.21e-05 CAGAGCTCGG CAACCCTG CAGCCGTGCG chrX:1380449-1380569 49 4.21e-05 CAGCGCTGCA CAACACTG CCACTGGCTC chrX:3968832-3968952 53 4.21e-05 CCAAAATACC CAACACTG GTTAACTGCT chr2L:14094781-14094901 80 4.21e-05 TCGTGCTAGC CAACACTG ATATCAGTGC chr2R:6652876-6652996 41 4.21e-05 CCGTGTTTAG CAACACTG GAAACGCCGT chr2R:18277164-18277284 43 4.21e-05 AGGGGATATA CAACACTG AAGTGGGCTT chr2R:17420070-17420190 80 4.21e-05 CAGCGCTTCG CAACACTG TCGCCGCCCC chr3L:2377524-2377644 45 4.21e-05 CGCTGTTAGC CAACACTG AAAAGTGGGC chr3L:13486681-13486801 61 6.46e-05 GGGCTTAAGT CACCGCTG AACAATATTA chr2R:21712036-21712156 99 6.46e-05 ATCCTGCAAG CGCCCCTG TAAGCTTGTT chr3L:10866795-10866915 110 6.46e-05 CCTTTAACGA CGCCACTG TCC chr2R:21313171-21313291 100 6.46e-05 CGTTAGCCGA CGCCCCTG TGTGCAAATT chr3L:1195963-1196083 72 6.46e-05 TTTCTAGATC CGCCCCTG GCTGTTCGTG chr3R:22041767-22041887 69 8.32e-05 TGCGGAGTGG CAACGCTG ATGGGTGATC chr2L:21156208-21156328 50 9.27e-05 TGTGGCAAAG CGACGCTG CCACGACGAT chr3R:31060365-31060485 71 9.27e-05 CCTCTGCTGG CGACGCTG CTTTTCCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15565910-15566030 2.3e-05 58_[+2]_54 chr2R:24265287-24265407 2.3e-05 56_[+2]_56 chr3R:23760564-23760684 2.3e-05 20_[+2]_92 chr3R:10161297-10161417 2.3e-05 8_[+2]_104 chr3R:18366498-18366618 2.3e-05 83_[+2]_29 chr2R:23818413-23818533 2.3e-05 55_[+2]_57 chr2L:18707966-18708086 2.3e-05 68_[+2]_44 chr3L:16582913-16583033 2.3e-05 36_[+2]_76 chr2R:20994785-20994905 2.3e-05 87_[+2]_25 chr3L:8110329-8110449 4.2e-05 50_[+2]_62 chrX:1380449-1380569 4.2e-05 48_[+2]_64 chrX:3968832-3968952 4.2e-05 52_[+2]_60 chr2L:14094781-14094901 4.2e-05 79_[+2]_33 chr2R:6652876-6652996 4.2e-05 40_[+2]_72 chr2R:18277164-18277284 4.2e-05 42_[+2]_70 chr2R:17420070-17420190 4.2e-05 79_[+2]_33 chr3L:2377524-2377644 4.2e-05 44_[+2]_68 chr3L:13486681-13486801 6.5e-05 60_[+2]_52 chr2R:21712036-21712156 6.5e-05 98_[+2]_14 chr3L:10866795-10866915 6.5e-05 109_[+2]_3 chr2R:21313171-21313291 6.5e-05 99_[+2]_13 chr3L:1195963-1196083 6.5e-05 71_[+2]_41 chr3R:22041767-22041887 8.3e-05 68_[+2]_44 chr2L:21156208-21156328 9.3e-05 49_[+2]_63 chr3R:31060365-31060485 9.3e-05 70_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAVCMCTG width=8 seqs=25 chr3L:15565910-15566030 ( 59) CACCACTG 1 chr2R:24265287-24265407 ( 57) CAGCACTG 1 chr3R:23760564-23760684 ( 21) CAGCACTG 1 chr3R:10161297-10161417 ( 9) CAGCCCTG 1 chr3R:18366498-18366618 ( 84) CAGCCCTG 1 chr2R:23818413-23818533 ( 56) CAGCACTG 1 chr2L:18707966-18708086 ( 69) CACCACTG 1 chr3L:16582913-16583033 ( 37) CAGCCCTG 1 chr2R:20994785-20994905 ( 88) CAGCCCTG 1 chr3L:8110329-8110449 ( 51) CAACCCTG 1 chrX:1380449-1380569 ( 49) CAACACTG 1 chrX:3968832-3968952 ( 53) CAACACTG 1 chr2L:14094781-14094901 ( 80) CAACACTG 1 chr2R:6652876-6652996 ( 41) CAACACTG 1 chr2R:18277164-18277284 ( 43) CAACACTG 1 chr2R:17420070-17420190 ( 80) CAACACTG 1 chr3L:2377524-2377644 ( 45) CAACACTG 1 chr3L:13486681-13486801 ( 61) CACCGCTG 1 chr2R:21712036-21712156 ( 99) CGCCCCTG 1 chr3L:10866795-10866915 ( 110) CGCCACTG 1 chr2R:21313171-21313291 ( 100) CGCCCCTG 1 chr3L:1195963-1196083 ( 72) CGCCCCTG 1 chr3R:22041767-22041887 ( 69) CAACGCTG 1 chr2L:21156208-21156328 ( 50) CGACGCTG 1 chr3R:31060365-31060485 ( 71) CGACGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 4.8e-001 -1129 241 -1129 -1129 130 -1129 36 -1129 51 57 58 -1129 -1129 241 -1129 -1129 75 76 -23 -1129 -1129 241 -1129 -1129 -1129 -1129 -1129 167 -1129 -1129 241 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 4.8e-001 0.000000 1.000000 0.000000 0.000000 0.760000 0.000000 0.240000 0.000000 0.440000 0.280000 0.280000 0.000000 0.000000 1.000000 0.000000 0.000000 0.520000 0.320000 0.160000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAVCMCTG MEME-2 regular expression -------------------------------------------------------------------------------- C[AG][ACG]C[AC]CTG -------------------------------------------------------------------------------- Time 13.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGCTG MEME-3 width = 8 sites = 17 llr = 168 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8::::11 pos.-specific C a2:1:a:1 probability G ::a1a::7 matrix T :::9::91 bits 2.4 * * ** 2.2 * * ** 1.9 * * ** 1.7 * * ** Relative 1.4 * * *** Entropy 1.2 ******* (14.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8110329-8110449 16 7.14e-06 CTGTCTAGGC CAGTGCTG TGAAGCGCGC chr2R:16170838-16170958 3 7.14e-06 AA CAGTGCTG TAAAATGTGT chr2R:24265287-24265407 24 7.14e-06 tcaaatttaC CAGTGCTG GAAAGCACAT chr3L:10694040-10694160 76 7.14e-06 GGCTATAACA CAGTGCTG TGAAATGCCA chr2L:4224220-4224340 40 7.14e-06 GCTCCATTTT CAGTGCTG TAAATTGCCA chr3R:23941762-23941882 111 7.14e-06 ACACACTGTG CAGTGCTG TG chrX:18516204-18516324 32 7.14e-06 CTTAAATTAG CAGTGCTG TCCGAAGCTG chr2R:9103140-9103260 79 1.15e-05 TGCAATGTGA CCGTGCTG CTGATTGTGT chrX:4113736-4113856 100 1.15e-05 TACTTGGTTT CCGTGCTG CAAGGAATTG chrX:15319363-15319483 3 1.87e-05 TT CAGTGCTC AGACTATCGA chrX:1380449-1380569 39 2.73e-05 AACTCTGGGC CAGCGCTG CACAACACTG chr3R:10161297-10161417 31 2.73e-05 GCAAAAATAC CAGGGCTG CCAGCTACAC chr2R:23668845-23668965 30 3.92e-05 TTGAATTTGC CAGTGCTT TTGGTTGCGA chrX:18366693-18366813 104 3.92e-05 GTTTTTTTTT CAGTGCTT CAGTGTTTA chr3L:8029510-8029630 52 5.07e-05 TGTGCTGTTT CCGTGCTC CAAGTCGATT chrX:18494342-18494462 76 5.07e-05 TAGCACCTTA CAGTGCAG CGACCCCACG chr2L:14094781-14094901 92 6.25e-05 ACACTGATAT CAGTGCTA AGCAGTGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8110329-8110449 7.1e-06 15_[+3]_97 chr2R:16170838-16170958 7.1e-06 2_[+3]_110 chr2R:24265287-24265407 7.1e-06 23_[+3]_89 chr3L:10694040-10694160 7.1e-06 75_[+3]_37 chr2L:4224220-4224340 7.1e-06 39_[+3]_73 chr3R:23941762-23941882 7.1e-06 110_[+3]_2 chrX:18516204-18516324 7.1e-06 31_[+3]_81 chr2R:9103140-9103260 1.1e-05 78_[+3]_34 chrX:4113736-4113856 1.1e-05 99_[+3]_13 chrX:15319363-15319483 1.9e-05 2_[+3]_110 chrX:1380449-1380569 2.7e-05 38_[+3]_74 chr3R:10161297-10161417 2.7e-05 30_[+3]_82 chr2R:23668845-23668965 3.9e-05 29_[+3]_83 chrX:18366693-18366813 3.9e-05 103_[+3]_9 chr3L:8029510-8029630 5.1e-05 51_[+3]_61 chrX:18494342-18494462 5.1e-05 75_[+3]_37 chr2L:14094781-14094901 6.3e-05 91_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGCTG width=8 seqs=17 chr3L:8110329-8110449 ( 16) CAGTGCTG 1 chr2R:16170838-16170958 ( 3) CAGTGCTG 1 chr2R:24265287-24265407 ( 24) CAGTGCTG 1 chr3L:10694040-10694160 ( 76) CAGTGCTG 1 chr2L:4224220-4224340 ( 40) CAGTGCTG 1 chr3R:23941762-23941882 ( 111) CAGTGCTG 1 chrX:18516204-18516324 ( 32) CAGTGCTG 1 chr2R:9103140-9103260 ( 79) CCGTGCTG 1 chrX:4113736-4113856 ( 100) CCGTGCTG 1 chrX:15319363-15319483 ( 3) CAGTGCTC 1 chrX:1380449-1380569 ( 39) CAGCGCTG 1 chr3R:10161297-10161417 ( 31) CAGGGCTG 1 chr2R:23668845-23668965 ( 30) CAGTGCTT 1 chrX:18366693-18366813 ( 104) CAGTGCTT 1 chr3L:8029510-8029630 ( 52) CCGTGCTC 1 chrX:18494342-18494462 ( 76) CAGTGCAG 1 chr2L:14094781-14094901 ( 92) CAGTGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 3.7e+002 -1073 240 -1073 -1073 141 -10 -1073 -1073 -1073 -1073 241 -1073 -1073 -168 -167 149 -1073 -1073 241 -1073 -1073 240 -1073 -1073 -239 -1073 -1073 158 -239 -68 191 -142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.7e+002 0.000000 1.000000 0.000000 0.000000 0.823529 0.176471 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.058824 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.000000 0.941176 0.058824 0.117647 0.705882 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-3 regular expression -------------------------------------------------------------------------------- CAGTGCTG -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGCAGG MEME-4 width = 8 sites = 2 llr = 26 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :a::a::: probability G a:aa::aa matrix T :::::::: bits 2.4 ***** ** 2.2 ***** ** 1.9 ***** ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11735473-11735593 66 2.53e-06 CACAATGACG GCGGCAGG CGCTCCAGGG chr3R:8524429-8524549 82 2.53e-06 TGCCTGCGCT GCGGCAGG AATGATGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11735473-11735593 2.5e-06 65_[+4]_47 chr3R:8524429-8524549 2.5e-06 81_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCAGG width=8 seqs=2 chr3R:11735473-11735593 ( 66) GCGGCAGG 1 chr3R:8524429-8524549 ( 82) GCGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.5e+004 -765 -765 241 -765 -765 240 -765 -765 -765 -765 241 -765 -765 -765 241 -765 -765 240 -765 -765 169 -765 -765 -765 -765 -765 241 -765 -765 -765 241 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 regular expression -------------------------------------------------------------------------------- GCGGCAGG -------------------------------------------------------------------------------- Time 25.95 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCCAC MEME-5 width = 8 sites = 3 llr = 39 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C ::a:aa:a probability G aa:a:::: matrix T :::::::: bits 2.4 ****** * 2.2 ****** * 1.9 ****** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9614097-9614217 80 2.59e-06 ACACTTTTGG GGCGCCAC TAAGGTAAAA chr3R:7821754-7821874 113 2.59e-06 AAAGAGCTTT GGCGCCAC chr2R:21313171-21313291 13 2.59e-06 TTCTCACGTA GGCGCCAC ATGTCAATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9614097-9614217 2.6e-06 79_[+5]_33 chr3R:7821754-7821874 2.6e-06 112_[+5] chr2R:21313171-21313291 2.6e-06 12_[+5]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCCAC width=8 seqs=3 chr3L:9614097-9614217 ( 80) GGCGCCAC 1 chr3R:7821754-7821874 ( 113) GGCGCCAC 1 chr2R:21313171-21313291 ( 13) GGCGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.6e+004 -823 -823 241 -823 -823 -823 241 -823 -823 240 -823 -823 -823 -823 241 -823 -823 240 -823 -823 -823 240 -823 -823 169 -823 -823 -823 -823 240 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAC MEME-5 regular expression -------------------------------------------------------------------------------- GGCGCCAC -------------------------------------------------------------------------------- Time 32.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10013328-10013448 9.86e-01 120 chr3R:8811008-8811128 7.06e-01 120 chr2R:20641606-20641726 2.57e-01 72_[+1(8.19e-05)]_40 chrX:3950275-3950395 1.21e-01 120 chr2R:21091955-21092075 7.83e-01 120 chr2R:14934068-14934188 4.33e-01 120 chr2R:18774900-18775020 1.25e-01 120 chr3R:30013253-30013373 6.71e-01 120 chr3R:8930291-8930411 4.57e-01 120 chr3R:27938374-27938494 7.17e-01 120 chr3L:4445996-4446116 9.98e-01 120 chrX:19964314-19964434 4.11e-01 120 chr2L:4861604-4861724 2.36e-01 120 chrX:6179554-6179674 9.93e-01 120 chr3L:1940950-1941070 5.85e-03 45_[+1(4.35e-06)]_67 chrX:4113736-4113856 9.03e-04 [+1(9.49e-05)]_91_[+3(1.15e-05)]_13 chr2L:12529139-12529259 6.98e-01 120 chrX:8233346-8233466 5.26e-01 120 chr2L:1043697-1043817 7.62e-01 120 chr3L:2913438-2913558 7.92e-01 120 chrX:8273884-8274004 4.68e-02 120 chr3L:5819411-5819531 2.29e-01 120 chr2R:22640224-22640344 9.44e-01 120 chr3R:26952336-26952456 5.04e-01 120 chr3R:26494385-26494505 1.00e+00 120 chrX:18320229-18320349 5.14e-01 120 chr2R:16856130-16856250 3.19e-01 120 chr2R:20994785-20994905 3.87e-02 46_[+2(2.31e-05)]_33_[+2(2.31e-05)]_\ 25 chr3L:7866753-7866873 8.84e-01 120 chr2R:23202130-23202250 5.55e-01 120 chr3L:1195963-1196083 8.67e-03 71_[+2(6.46e-05)]_41 chr2L:1145083-1145203 8.73e-01 120 chrX:20423818-20423938 4.34e-01 120 chrX:16105824-16105944 1.68e-01 120 chr3L:3760721-3760841 5.97e-01 120 chr2R:21640792-21640912 7.89e-01 120 chrX:5671817-5671937 3.97e-03 15_[+1(1.14e-05)]_97 chrX:17465644-17465764 6.70e-01 120 chr3R:30550155-30550275 9.99e-01 120 chr2R:24411760-24411880 2.28e-01 120 chr3R:16655831-16655951 9.58e-01 120 chr3L:1139523-1139643 9.62e-01 120 chr2R:22976664-22976784 7.58e-01 120 chr3R:27289781-27289901 3.54e-01 120 chr2R:18451120-18451240 9.99e-01 120 chr2R:24629514-24629634 8.04e-01 120 chr3R:24100847-24100967 6.01e-02 69_[+4(8.49e-05)]_43 chr2R:7636708-7636828 6.26e-02 120 chrX:5745151-5745271 1.92e-04 17_[+1(6.97e-06)]_25_[+5(8.65e-05)]_\ 62 chr3L:6086197-6086317 3.72e-01 120 chr3L:22276142-22276262 1.22e-02 37_[+1(2.02e-05)]_75 chrX:8536782-8536902 2.50e-01 120 chr2R:11044484-11044604 8.60e-01 120 chr2L:9494853-9494973 8.63e-01 120 chr2R:21313171-21313291 2.35e-04 12_[+5(2.59e-06)]_79_[+2(6.46e-05)]_\ 13 chr2L:10231282-10231402 1.00e+00 120 chr2L:8894340-8894460 3.83e-01 120 chrX:18516204-18516324 2.39e-02 31_[+3(7.14e-06)]_81 chr3R:27557154-27557274 4.18e-01 120 chr2R:24293575-24293695 4.99e-02 120 chr2R:10160284-10160404 2.08e-01 120 chrX:8720277-8720397 8.00e-01 120 chr2R:21895093-21895213 8.09e-01 120 chr2R:24292878-24292998 9.94e-01 120 chrX:15319363-15319483 7.18e-03 2_[+3(1.87e-05)]_110 chr3L:11402435-11402555 7.08e-01 120 chr3L:4413191-4413311 9.99e-01 120 chr3R:10024142-10024262 3.30e-01 120 chr3R:18914673-18914793 6.37e-02 120 chrX:15120206-15120326 7.18e-01 120 chr3L:1151785-1151905 6.83e-01 120 chr3R:8784934-8785054 1.00e+00 120 chr2L:2873487-2873607 7.10e-01 120 chrX:18899979-18900099 1.00e+00 120 chr2L:3058889-3059009 3.56e-01 120 chr3R:26235198-26235318 9.92e-01 120 chr3L:17009772-17009892 3.83e-01 120 chr3R:23941762-23941882 4.03e-03 110_[+3(7.14e-06)]_2 chrX:10600646-10600766 1.09e-01 120 chr3L:13964693-13964813 4.32e-01 120 chr3L:7861184-7861304 1.00e+00 120 chr2R:9388606-9388726 8.66e-01 120 chr3R:8524429-8524549 1.90e-04 81_[+4(2.53e-06)]_31 chr3L:13015306-13015426 8.57e-01 120 chr2R:24197687-24197807 4.44e-01 120 chr3R:13382988-13383108 2.71e-02 9_[+1(2.02e-05)]_103 chr3L:16582913-16583033 1.04e-02 36_[+2(2.31e-05)]_76 chr3R:15963828-15963948 6.09e-01 120 chr3L:11785461-11785581 8.85e-01 120 chrX:19665950-19666070 5.23e-02 120 chrX:8141434-8141554 6.41e-03 10_[+1(6.97e-06)]_102 chr3L:3970522-3970642 2.71e-01 120 chr3L:2377524-2377644 4.16e-04 9_[+1(4.35e-06)]_27_[+2(4.21e-05)]_\ 68 chr2L:20734279-20734399 1.63e-03 7_[+1(4.35e-06)]_105 chr2R:17420070-17420190 3.20e-04 79_[+2(4.21e-05)]_33 chr3R:7821754-7821874 3.95e-04 112_[+5(2.59e-06)] chr3R:23228761-23228881 5.65e-01 120 chrX:18366693-18366813 2.75e-02 103_[+3(3.92e-05)]_9 chrX:8677575-8677695 9.41e-01 120 chr2L:937040-937160 4.62e-02 120 chrX:13253222-13253342 7.62e-01 120 chrX:11379278-11379398 1.00e+00 120 chrX:10474632-10474752 3.58e-03 24_[+1(4.35e-06)]_88 chrX:4540731-4540851 7.33e-01 120 chr2L:9938095-9938215 2.53e-01 120 chr3L:1609816-1609936 2.98e-01 120 chrX:11715452-11715572 3.64e-04 88_[+4(8.49e-05)]_24 chrX:6973445-6973565 4.74e-01 120 chr2R:17698940-17699060 7.27e-01 120 chrX:16102476-16102596 7.79e-01 120 chr3R:13840143-13840263 1.07e-01 43_[+5(8.65e-05)]_69 chrX:16650577-16650697 9.84e-01 120 chr2L:9943656-9943776 8.72e-01 120 chr3R:25215197-25215317 5.08e-01 120 chrX:7703122-7703242 1.00e+00 120 chr2R:16849574-16849694 9.79e-01 120 chr3R:11243265-11243385 1.79e-01 120 chr2R:23668845-23668965 1.73e-02 29_[+3(3.92e-05)]_83 chr3R:16704429-16704549 8.99e-01 120 chr3R:11735473-11735593 3.27e-04 65_[+4(2.53e-06)]_47 chrX:18494342-18494462 1.56e-02 75_[+3(5.07e-05)]_37 chr2L:18707966-18708086 5.70e-02 68_[+2(2.31e-05)]_44 chr2L:10736117-10736237 5.58e-01 120 chr3R:10411861-10411981 8.30e-01 120 chr3L:10866795-10866915 1.05e-02 109_[+2(6.46e-05)]_3 chr3R:21993023-21993143 5.25e-01 120 chr3L:10362718-10362838 5.65e-01 120 chrX:19521894-19522014 9.12e-01 120 chr2L:4224220-4224340 1.38e-02 39_[+3(7.14e-06)]_73 chr2R:16660214-16660334 1.00e+00 120 chr2L:1158257-1158377 9.61e-01 120 chr2L:7702581-7702701 1.37e-01 120 chr3R:8033104-8033224 7.25e-01 120 chr3R:8564002-8564122 1.63e-01 120 chr2L:11203728-11203848 9.01e-02 120 chr3L:4521862-4521982 1.01e-02 109_[+1(1.14e-05)]_3 chrX:16103599-16103719 6.13e-01 120 chr2R:13999243-13999363 9.93e-01 120 chr3L:8029510-8029630 7.23e-02 51_[+3(5.07e-05)]_61 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38_[+3(2.73e-05)]_2_[+2(4.21e-05)]_\ 11_[+1(4.35e-06)]_45 chr3L:21445747-21445867 4.81e-01 120 chr3L:8110329-8110449 4.69e-06 15_[+3(7.14e-06)]_8_[+1(2.28e-05)]_\ 11_[+2(4.21e-05)]_62 chr2L:1628320-1628440 1.00e+00 120 chr2L:10428671-10428791 3.95e-01 120 chr2R:13054932-13055052 5.78e-01 120 chr3R:22041767-22041887 6.39e-03 68_[+2(8.32e-05)]_44 chr2R:23383473-23383593 9.97e-01 120 chr3L:15565910-15566030 2.05e-03 58_[+2(2.31e-05)]_54 chr3R:23028671-23028791 9.87e-01 120 chr3R:10696529-10696649 4.20e-01 120 chr2L:3477387-3477507 9.96e-01 120 chrX:18635425-18635545 5.95e-01 120 chr3R:22121371-22121491 9.78e-01 120 chr2L:15751128-15751248 5.65e-01 120 chr2R:14411708-14411828 6.69e-01 120 chr3L:9402416-9402536 3.82e-04 19_[+1(2.02e-05)]_93 chr3R:28599645-28599765 6.52e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************