******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/maf-S.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:5745103-5745223 1.0000 120 chr3R:24626268-24626388 1.0000 120 chrX:3538906-3539026 1.0000 120 chr3R:16309411-16309531 1.0000 120 chr3R:17777032-17777152 1.0000 120 chr3R:21188163-21188283 1.0000 120 chrX:2136538-2136658 1.0000 120 chrX:8244370-8244490 1.0000 120 chr2R:6157395-6157515 1.0000 120 chr2R:12173484-12173604 1.0000 120 chrX:16781265-16781385 1.0000 120 chr3R:20273698-20273818 1.0000 120 chr2R:20590742-20590862 1.0000 120 chr3L:11293416-11293536 1.0000 120 chr2R:21011876-21011996 1.0000 120 chr3R:23331933-23332053 1.0000 120 chr3L:19190878-19190998 1.0000 120 chr2R:7653867-7653987 1.0000 120 chrX:13333064-13333184 1.0000 120 chr3L:18622485-18622605 1.0000 120 chr3R:17231644-17231764 1.0000 120 chr2R:10045664-10045784 1.0000 120 chr2L:8437298-8437418 1.0000 120 chrX:19348961-19349081 1.0000 120 chr2R:21910012-21910132 1.0000 120 chr3R:9057002-9057122 1.0000 120 chr3L:10858702-10858822 1.0000 120 chr3R:16260469-16260589 1.0000 120 chr2L:3058920-3059040 1.0000 120 chr2R:11202153-11202273 1.0000 120 chr3R:17526261-17526381 1.0000 120 chr2R:21183204-21183324 1.0000 120 chr3R:4804229-4804349 1.0000 120 chr3L:11113739-11113859 1.0000 120 chr2R:6870581-6870701 1.0000 120 chr3L:6086119-6086239 1.0000 120 chr4:835908-836028 1.0000 120 chr3R:30789515-30789635 1.0000 120 chr2R:10265448-10265568 1.0000 120 chr3L:17532207-17532327 1.0000 120 chrX:21362949-21363069 1.0000 120 chr3R:26230290-26230410 1.0000 120 chrX:2720248-2720368 1.0000 120 chr3R:24031772-24031892 1.0000 120 chr3R:26242702-26242822 1.0000 120 chrX:5084906-5085026 1.0000 120 chr3R:16996328-16996448 1.0000 120 chr2R:14136814-14136934 1.0000 120 chr2L:3477350-3477470 1.0000 120 chr2L:7601990-7602110 1.0000 120 chr2L:1362364-1362484 1.0000 120 chr2L:7571898-7572018 1.0000 120 chrX:4116858-4116978 1.0000 120 chrX:15120231-15120351 1.0000 120 chr3R:5032196-5032316 1.0000 120 chrX:13281420-13281540 1.0000 120 chr3L:9614085-9614205 1.0000 120 chr2R:18325091-18325211 1.0000 120 chrX:618783-618903 1.0000 120 chr2R:9577941-9578061 1.0000 120 chr3R:29068965-29069085 1.0000 120 chr2R:12729398-12729518 1.0000 120 chr3R:32051855-32051975 1.0000 120 chrX:4366319-4366439 1.0000 120 chr2L:10736193-10736313 1.0000 120 chr2L:9448866-9448986 1.0000 120 chr2R:23970007-23970127 1.0000 120 chr2R:20641584-20641704 1.0000 120 chr2R:20582459-20582579 1.0000 120 chr2R:6983869-6983989 1.0000 120 chr3R:18243724-18243844 1.0000 120 chr3R:14714298-14714418 1.0000 120 chr3R:30058115-30058235 1.0000 120 chr3R:20908776-20908896 1.0000 120 chrX:4498444-4498564 1.0000 120 chr2L:3888338-3888458 1.0000 120 chr2R:10066671-10066791 1.0000 120 chrX:17510653-17510773 1.0000 120 chrX:3136848-3136968 1.0000 120 chrX:17175873-17175993 1.0000 120 chr2R:12198852-12198972 1.0000 120 chr2R:14604280-14604400 1.0000 120 chr2L:8982736-8982856 1.0000 120 chr2L:9494795-9494915 1.0000 120 chr2L:22121760-22121880 1.0000 120 chr2L:892591-892711 1.0000 120 chr2R:12569826-12569946 1.0000 120 chr2L:16816090-16816210 1.0000 120 chr3L:3449763-3449883 1.0000 120 chr3R:31053882-31054002 1.0000 120 chr2R:23385740-23385860 1.0000 120 chr3L:1618214-1618334 1.0000 120 chr2L:1428512-1428632 1.0000 120 chr3R:21161867-21161987 1.0000 120 chrX:3134420-3134540 1.0000 120 chr3R:26952328-26952448 1.0000 120 chr3R:30814938-30815058 1.0000 120 chr3L:2572151-2572271 1.0000 120 chrX:13626038-13626158 1.0000 120 chr2R:24943162-24943282 1.0000 120 chr3R:30802308-30802428 1.0000 120 chr3R:15644827-15644947 1.0000 120 chr2R:13586383-13586503 1.0000 120 chrX:14580512-14580632 1.0000 120 chrX:10601551-10601671 1.0000 120 chr3R:21140570-21140690 1.0000 120 chr2R:16097080-16097200 1.0000 120 chr2L:203692-203812 1.0000 120 chr2L:5542297-5542417 1.0000 120 chr2L:13461097-13461217 1.0000 120 chr2R:14981177-14981297 1.0000 120 chr2R:11629981-11630101 1.0000 120 chr2R:9544861-9544981 1.0000 120 chr2L:4133280-4133400 1.0000 120 chr2R:21323987-21324107 1.0000 120 chrX:17582826-17582946 1.0000 120 chrX:15319370-15319490 1.0000 120 chr2R:16322135-16322255 1.0000 120 chr3L:9899175-9899295 1.0000 120 chr2R:20601230-20601350 1.0000 120 chrX:7901772-7901892 1.0000 120 chr2L:14359098-14359218 1.0000 120 chr3R:16655810-16655930 1.0000 120 chrX:11451145-11451265 1.0000 120 chrX:12631489-12631609 1.0000 120 chr3R:30022674-30022794 1.0000 120 chr3L:16045393-16045513 1.0000 120 chr3R:31747552-31747672 1.0000 120 chr2L:22169249-22169369 1.0000 120 chr2L:10304008-10304128 1.0000 120 chr3L:8110283-8110403 1.0000 120 chr2R:24046825-24046945 1.0000 120 chr2L:10437466-10437586 1.0000 120 chr2R:6656347-6656467 1.0000 120 chr2R:7636702-7636822 1.0000 120 chr3R:21073312-21073432 1.0000 120 chr3L:7861200-7861320 1.0000 120 chr3R:16338459-16338579 1.0000 120 chr3L:19000613-19000733 1.0000 120 chrX:18370821-18370941 1.0000 120 chr3L:21821862-21821982 1.0000 120 chr3R:6646819-6646939 1.0000 120 chr3L:3896793-3896913 1.0000 120 chr2R:23818380-23818500 1.0000 120 chr3L:3818614-3818734 1.0000 120 chr2R:5757665-5757785 1.0000 120 chr2L:16690143-16690263 1.0000 120 chr2R:9989046-9989166 1.0000 120 chr3L:3336878-3336998 1.0000 120 chr3R:15225479-15225599 1.0000 120 chr2L:8738342-8738462 1.0000 120 chr3R:18274560-18274680 1.0000 120 chr3R:25888368-25888488 1.0000 120 chr3R:25168465-25168585 1.0000 120 chrX:18635416-18635536 1.0000 120 chr2R:11178530-11178650 1.0000 120 chrX:2149672-2149792 1.0000 120 chrX:1880354-1880474 1.0000 120 chr2L:20918860-20918980 1.0000 120 chrX:5892214-5892334 1.0000 120 chr2L:7702604-7702724 1.0000 120 chr2R:10899029-10899149 1.0000 120 chr2L:8364658-8364778 1.0000 120 chr2L:12369663-12369783 1.0000 120 chrX:10600657-10600777 1.0000 120 chr2R:10555609-10555729 1.0000 120 chr3R:6007476-6007596 1.0000 120 chr3L:12803782-12803902 1.0000 120 chr2L:21260951-21261071 1.0000 120 chr3L:1350626-1350746 1.0000 120 chrX:16782266-16782386 1.0000 120 chr2R:23176759-23176879 1.0000 120 chr2L:19935249-19935369 1.0000 120 chrX:16610728-16610848 1.0000 120 chr3R:23722098-23722218 1.0000 120 chr3R:8233426-8233546 1.0000 120 chrX:9137292-9137412 1.0000 120 chr3L:5152644-5152764 1.0000 120 chr3L:21136049-21136169 1.0000 120 chr3L:12414804-12414924 1.0000 120 chr3R:27273645-27273765 1.0000 120 chrX:19643241-19643361 1.0000 120 chr2L:6797544-6797664 1.0000 120 chr3R:4714191-4714311 1.0000 120 chr2L:16703862-16703982 1.0000 120 chr3L:10745750-10745870 1.0000 120 chr2R:20906637-20906757 1.0000 120 chr2L:1614191-1614311 1.0000 120 chrX:11137696-11137816 1.0000 120 chr2R:18277277-18277397 1.0000 120 chr2L:10767938-10768058 1.0000 120 chr2L:13833201-13833321 1.0000 120 chr3R:6457073-6457193 1.0000 120 chr3L:13486752-13486872 1.0000 120 chr3R:20574761-20574881 1.0000 120 chr2L:283243-283363 1.0000 120 chrX:10067669-10067789 1.0000 120 chr3R:30889130-30889250 1.0000 120 chr2R:15381238-15381358 1.0000 120 chr2L:11829396-11829516 1.0000 120 chr2R:24743617-24743737 1.0000 120 chr3R:13683813-13683933 1.0000 120 chr3L:21445745-21445865 1.0000 120 chr2L:4394068-4394188 1.0000 120 chr2R:8615284-8615404 1.0000 120 chr3L:4186834-4186954 1.0000 120 chr2R:21295594-21295714 1.0000 120 chr2R:24086531-24086651 1.0000 120 chr3R:14904052-14904172 1.0000 120 chr3R:6406703-6406823 1.0000 120 chr2L:207277-207397 1.0000 120 chr2R:16170818-16170938 1.0000 120 chr2R:16571751-16571871 1.0000 120 chr2L:21658638-21658758 1.0000 120 chrX:3719807-3719927 1.0000 120 chr3R:10696532-10696652 1.0000 120 chrX:17738278-17738398 1.0000 120 chr2L:8488905-8489025 1.0000 120 chr2R:7490378-7490498 1.0000 120 chr3L:3090749-3090869 1.0000 120 chr3L:11580057-11580177 1.0000 120 chr3R:16431781-16431901 1.0000 120 chr2L:6357060-6357180 1.0000 120 chr3L:5789877-5789997 1.0000 120 chr2R:21134558-21134678 1.0000 120 chr2R:12636610-12636730 1.0000 120 chr3L:1731040-1731160 1.0000 120 chr3R:22133795-22133915 1.0000 120 chr2R:22807002-22807122 1.0000 120 chr3L:13922478-13922598 1.0000 120 chr2L:10989327-10989447 1.0000 120 chrX:20257326-20257446 1.0000 120 chr2R:16178550-16178670 1.0000 120 chr3R:5856438-5856558 1.0000 120 chr2R:5122238-5122358 1.0000 120 chrX:5883532-5883652 1.0000 120 chrX:14602678-14602798 1.0000 120 chr3R:21856119-21856239 1.0000 120 chr2R:22374996-22375116 1.0000 120 chr2R:11275696-11275816 1.0000 120 chr3R:24333318-24333438 1.0000 120 chr4:406979-407099 1.0000 120 chr3L:10899343-10899463 1.0000 120 chr2L:20950800-20950920 1.0000 120 chrX:1380455-1380575 1.0000 120 chr3R:9038800-9038920 1.0000 120 chr2L:19867132-19867252 1.0000 120 chr3L:13923455-13923575 1.0000 120 chrX:2536266-2536386 1.0000 120 chrX:17751857-17751977 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_maf-S/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/maf-S.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.304 C 0.203 G 0.197 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.304 C 0.203 G 0.197 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYTGCCAG MEME-1 width = 8 sites = 32 llr = 293 E-value = 3.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:1:::a1 pos.-specific C :6::aa:3 probability G 8::a:::7 matrix T 149::::: bits 2.3 *** 2.1 *** 1.9 *** 1.6 **** Relative 1.4 ***** Entropy 1.2 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCAG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:207277-207397 27 5.76e-06 GACTAATTTC GCTGCCAG ACTTCTTGTA chr2L:1614191-1614311 39 5.76e-06 AGTGTATAGT GCTGCCAG CTATTTGCAT chr3L:21136049-21136169 89 5.76e-06 TATTGGCAGT GCTGCCAG CTGCTATAGC chr3R:8233426-8233546 29 5.76e-06 CGAGTCCGGG GCTGCCAG CCATAATCTC chr3R:18274560-18274680 72 5.76e-06 TTAAACGAAT GCTGCCAG ACTCTGCATT chr3L:3896793-3896913 60 5.76e-06 CTGAAACCGG GCTGCCAG GCTACCGATT chr3R:21073312-21073432 3 5.76e-06 AT GCTGCCAG TGTGCACGTA chr2R:22374996-22375116 37 1.41e-05 CTCGATTACT GTTGCCAG CCCTAGCATA chrX:5883532-5883652 16 1.41e-05 AATCTAAGAG GTTGCCAG ATCGGGGTAA chr3R:31053882-31054002 101 1.41e-05 GTATATTGGC GTTGCCAG ATTATCGAAT chrX:2720248-2720368 95 1.41e-05 GTGAACAAGA GTTGCCAG ACGATCAGAG chr3R:16309411-16309531 85 1.41e-05 ACGAGGCCTT GTTGCCAG GTATATATTA chr3R:30022674-30022794 110 2.01e-05 CCCAAGTCGA GCTGCCAC CTT chr2R:12569826-12569946 45 2.01e-05 ACATGGTAAA GCTGCCAC CATGTTTCAG chrX:1380455-1380575 64 2.87e-05 CTGGCTCGGC GTTGCCAC CTCGCGGGCA chr2R:9989046-9989166 27 2.87e-05 TTCCTTTAGC GTTGCCAC TTCAATTTCT chrX:7901772-7901892 76 2.87e-05 GCCCTGCGAC GTTGCCAC ACGTGCGAAA chr2L:8437298-8437418 55 2.87e-05 GAGTGGGGGA GTTGCCAC ATCGCTGGTG chr3R:20574761-20574881 105 3.76e-05 CCCTCACAGT ACTGCCAG TCCAGGCT chr2L:19935249-19935369 19 3.76e-05 TTCCAATCCG ACTGCCAG CGGAGCAgca chrX:18370821-18370941 51 4.35e-05 TGCTCATTCC GCAGCCAG GGTCACACTT chr3R:31747552-31747672 73 5.24e-05 ATGAAACGGC GCTGCCAA CGCGTTTAGA chr3R:17777032-17777152 76 5.24e-05 ACTACAACTT GCTGCCAA TGTAAAAATA chrX:4116858-4116978 37 6.53e-05 AAACAGCAGT ATTGCCAG ATAGCGAAAC chr2L:8738342-8738462 81 7.40e-05 TATTTATGTT TCTGCCAG CTGATAAGCG chr2L:1362364-1362484 61 7.40e-05 TCTTCGCACT TCTGCCAG CGCCATCTGT chr2L:6357060-6357180 87 8.63e-05 TTGCGTTTCA GCTGCCGG AAGATAGATG chr3R:14904052-14904172 70 8.63e-05 TGGCTATTTT GTAGCCAG AACTTGTGCT chr2L:10767938-10768058 4 8.63e-05 TTT GTAGCCAG CTATCGGTCC chrX:17738278-17738398 9 1.08e-04 AAGGGATT ACTGCCAC GTAGAACACG chr2R:24743617-24743737 63 1.08e-04 CACTTGTCGC GTTGCCAA CCATTGCCAA chrX:5745103-5745223 40 1.08e-04 ACTCGACGCC ACTGCCAC CACTACAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:207277-207397 5.8e-06 26_[+1]_86 chr2L:1614191-1614311 5.8e-06 38_[+1]_74 chr3L:21136049-21136169 5.8e-06 88_[+1]_24 chr3R:8233426-8233546 5.8e-06 28_[+1]_84 chr3R:18274560-18274680 5.8e-06 71_[+1]_41 chr3L:3896793-3896913 5.8e-06 59_[+1]_53 chr3R:21073312-21073432 5.8e-06 2_[+1]_110 chr2R:22374996-22375116 1.4e-05 36_[+1]_76 chrX:5883532-5883652 1.4e-05 15_[+1]_97 chr3R:31053882-31054002 1.4e-05 100_[+1]_12 chrX:2720248-2720368 1.4e-05 94_[+1]_18 chr3R:16309411-16309531 1.4e-05 84_[+1]_28 chr3R:30022674-30022794 2e-05 109_[+1]_3 chr2R:12569826-12569946 2e-05 44_[+1]_68 chrX:1380455-1380575 2.9e-05 63_[+1]_49 chr2R:9989046-9989166 2.9e-05 26_[+1]_86 chrX:7901772-7901892 2.9e-05 75_[+1]_37 chr2L:8437298-8437418 2.9e-05 54_[+1]_58 chr3R:20574761-20574881 3.8e-05 104_[+1]_8 chr2L:19935249-19935369 3.8e-05 18_[+1]_94 chrX:18370821-18370941 4.4e-05 50_[+1]_62 chr3R:31747552-31747672 5.2e-05 72_[+1]_40 chr3R:17777032-17777152 5.2e-05 75_[+1]_37 chrX:4116858-4116978 6.5e-05 36_[+1]_76 chr2L:8738342-8738462 7.4e-05 80_[+1]_32 chr2L:1362364-1362484 7.4e-05 60_[+1]_52 chr2L:6357060-6357180 8.6e-05 86_[+1]_26 chr3R:14904052-14904172 8.6e-05 69_[+1]_43 chr2L:10767938-10768058 8.6e-05 3_[+1]_109 chrX:17738278-17738398 0.00011 8_[+1]_104 chr2R:24743617-24743737 0.00011 62_[+1]_50 chrX:5745103-5745223 0.00011 39_[+1]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTGCCAG width=8 seqs=32 chr2L:207277-207397 ( 27) GCTGCCAG 1 chr2L:1614191-1614311 ( 39) GCTGCCAG 1 chr3L:21136049-21136169 ( 89) GCTGCCAG 1 chr3R:8233426-8233546 ( 29) GCTGCCAG 1 chr3R:18274560-18274680 ( 72) GCTGCCAG 1 chr3L:3896793-3896913 ( 60) GCTGCCAG 1 chr3R:21073312-21073432 ( 3) GCTGCCAG 1 chr2R:22374996-22375116 ( 37) GTTGCCAG 1 chrX:5883532-5883652 ( 16) GTTGCCAG 1 chr3R:31053882-31054002 ( 101) GTTGCCAG 1 chrX:2720248-2720368 ( 95) GTTGCCAG 1 chr3R:16309411-16309531 ( 85) GTTGCCAG 1 chr3R:30022674-30022794 ( 110) GCTGCCAC 1 chr2R:12569826-12569946 ( 45) GCTGCCAC 1 chrX:1380455-1380575 ( 64) GTTGCCAC 1 chr2R:9989046-9989166 ( 27) GTTGCCAC 1 chrX:7901772-7901892 ( 76) GTTGCCAC 1 chr2L:8437298-8437418 ( 55) GTTGCCAC 1 chr3R:20574761-20574881 ( 105) ACTGCCAG 1 chr2L:19935249-19935369 ( 19) ACTGCCAG 1 chrX:18370821-18370941 ( 51) GCAGCCAG 1 chr3R:31747552-31747672 ( 73) GCTGCCAA 1 chr3R:17777032-17777152 ( 76) GCTGCCAA 1 chrX:4116858-4116978 ( 37) ATTGCCAG 1 chr2L:8738342-8738462 ( 81) TCTGCCAG 1 chr2L:1362364-1362484 ( 61) TCTGCCAG 1 chr2L:6357060-6357180 ( 87) GCTGCCGG 1 chr3R:14904052-14904172 ( 70) GTAGCCAG 1 chr2L:10767938-10768058 ( 4) GTAGCCAG 1 chrX:17738278-17738398 ( 9) ACTGCCAC 1 chr2R:24743617-24743737 ( 63) GTTGCCAA 1 chrX:5745103-5745223 ( 40) ACTGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 3.5e-005 -96 -1164 198 -224 -1164 155 -1164 46 -170 -1164 -1164 161 -1164 -1164 234 -1164 -1164 230 -1164 -1164 -1164 230 -1164 -1164 167 -1164 -266 -1164 -170 30 173 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.5e-005 0.156250 0.000000 0.781250 0.062500 0.000000 0.593750 0.000000 0.406250 0.093750 0.000000 0.000000 0.906250 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.968750 0.000000 0.031250 0.000000 0.093750 0.250000 0.656250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGCCAG MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]TGCCA[GC] -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCACC MEME-2 width = 8 sites = 21 llr = 202 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::8:: pos.-specific C 1a:aa:78 probability G 9:9::2:: matrix T ::::::22 bits 2.3 * ** 2.1 * ** 1.9 **** 1.6 ***** Relative 1.4 ***** * Entropy 1.2 ****** * (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6797544-6797664 30 4.07e-06 CAACTTTTTA GCGCCACC TGGCTGAATA chr3R:30022674-30022794 43 4.07e-06 ATCATCCCTG GCGCCACC TGTAGGCCTT chrX:7901772-7901892 26 4.07e-06 AATATCGTTT GCGCCACC ATCCCTGGTC chr2L:16816090-16816210 46 4.07e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr3L:11293416-11293536 107 4.07e-06 GTCCCACTGT GCGCCACC GGTTGC chr3R:21073312-21073432 78 6.70e-06 AGTTCTGGTT GCGCCGCC TGGGTGGTTA chr3R:16431781-16431901 25 1.26e-05 ATTCTCACAG GCGCCATC TTACGTATTT chr2R:20582459-20582579 91 1.26e-05 AAATGCTAAG GCGCCATC TAGCCCCTGG chr2L:1362364-1362484 43 1.26e-05 TCCGTTTGTG GCGCCATC TCTTCGCACT chrX:8244370-8244490 80 1.26e-05 TACATGATTT GCGCCATC GTTGTGGGCG chr2R:12636610-12636730 31 2.28e-05 GATTTGTTTG CCGCCACC GTCGCTGCCG chr2L:283243-283363 64 2.28e-05 CGATATGATA GCGCCACT TGACGTTTCT chr3L:9614085-9614205 93 2.28e-05 CACTTTTGGG GCGCCACT AAGGTAAAAT chrX:17751857-17751977 74 3.32e-05 AGAGTAGAGG GCGCCGCT TACTTTTTGA chr2R:12198852-12198972 102 3.32e-05 CGAAATGAAA CCGCCGCC AAATTCAAAA chr3L:17532207-17532327 68 3.32e-05 CAATTCTTGG CCGCCGCC TCTTGAATGT chr3R:27273645-27273765 53 4.34e-05 AACAACGGCA GCGCCAGC AGCTAGTGTT chr2R:20590742-20590862 92 4.34e-05 TTCTCTTTGT GCACCACC CAAAGAAAAG chr3R:16996328-16996448 64 4.95e-05 TTTGAAAAGC GCGCCAAC GAAAACATGA chr3R:16260469-16260589 10 6.42e-05 TGATTTCGC GCGCCATT CTAGACAAAG chr3L:2572151-2572271 59 7.09e-05 TCTGTGCCGA GCACCGCC TAACGAGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6797544-6797664 4.1e-06 29_[+2]_83 chr3R:30022674-30022794 4.1e-06 42_[+2]_70 chrX:7901772-7901892 4.1e-06 25_[+2]_87 chr2L:16816090-16816210 4.1e-06 45_[+2]_67 chr3L:11293416-11293536 4.1e-06 106_[+2]_6 chr3R:21073312-21073432 6.7e-06 77_[+2]_35 chr3R:16431781-16431901 1.3e-05 24_[+2]_88 chr2R:20582459-20582579 1.3e-05 90_[+2]_22 chr2L:1362364-1362484 1.3e-05 42_[+2]_70 chrX:8244370-8244490 1.3e-05 79_[+2]_33 chr2R:12636610-12636730 2.3e-05 30_[+2]_82 chr2L:283243-283363 2.3e-05 63_[+2]_49 chr3L:9614085-9614205 2.3e-05 92_[+2]_20 chrX:17751857-17751977 3.3e-05 73_[+2]_39 chr2R:12198852-12198972 3.3e-05 101_[+2]_11 chr3L:17532207-17532327 3.3e-05 67_[+2]_45 chr3R:27273645-27273765 4.3e-05 52_[+2]_60 chr2R:20590742-20590862 4.3e-05 91_[+2]_21 chr3R:16996328-16996448 4.9e-05 63_[+2]_49 chr3R:16260469-16260589 6.4e-05 9_[+2]_103 chr3L:2572151-2572271 7.1e-05 58_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCACC width=8 seqs=21 chr2L:6797544-6797664 ( 30) GCGCCACC 1 chr3R:30022674-30022794 ( 43) GCGCCACC 1 chrX:7901772-7901892 ( 26) GCGCCACC 1 chr2L:16816090-16816210 ( 46) GCGCCACC 1 chr3L:11293416-11293536 ( 107) GCGCCACC 1 chr3R:21073312-21073432 ( 78) GCGCCGCC 1 chr3R:16431781-16431901 ( 25) GCGCCATC 1 chr2R:20582459-20582579 ( 91) GCGCCATC 1 chr2L:1362364-1362484 ( 43) GCGCCATC 1 chrX:8244370-8244490 ( 80) GCGCCATC 1 chr2R:12636610-12636730 ( 31) CCGCCACC 1 chr2L:283243-283363 ( 64) GCGCCACT 1 chr3L:9614085-9614205 ( 93) GCGCCACT 1 chrX:17751857-17751977 ( 74) GCGCCGCT 1 chr2R:12198852-12198972 ( 102) CCGCCGCC 1 chr3L:17532207-17532327 ( 68) CCGCCGCC 1 chr3R:27273645-27273765 ( 53) GCGCCAGC 1 chr2R:20590742-20590862 ( 92) GCACCACC 1 chr3R:16996328-16996448 ( 64) GCGCCAAC 1 chr3R:16260469-16260589 ( 10) GCGCCATT 1 chr3L:2572151-2572271 ( 59) GCACCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 2.4e+000 -1104 -51 212 -1104 -1104 230 -1104 -1104 -167 -1104 220 -1104 -1104 230 -1104 -1104 -1104 230 -1104 -1104 133 -1104 27 -1104 -267 172 -205 -31 -1104 200 -1104 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.4e+000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.095238 0.000000 0.904762 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.761905 0.000000 0.238095 0.000000 0.047619 0.666667 0.047619 0.238095 0.000000 0.809524 0.000000 0.190476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-2 regular expression -------------------------------------------------------------------------------- GCGCC[AG][CT]C -------------------------------------------------------------------------------- Time 15.09 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGTCACA MEME-3 width = 8 sites = 7 llr = 81 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a:a pos.-specific C a:::a:a: probability G :aa::::: matrix T :::a:::: bits 2.3 *** * * 2.1 *** * * 1.9 ***** * 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGTCACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25888368-25888488 62 8.88e-06 CTGTGGCGAG CGGTCACA ACTTAGCGGG chr3L:3896793-3896913 100 8.88e-06 GGATCTAGTC CGGTCACA CTGGTGGGTG chr3R:6646819-6646939 84 8.88e-06 TGTCCATCGA CGGTCACA CTTACGCGTG chrX:15319370-15319490 61 8.88e-06 CGGGCACCGA CGGTCACA CTGTCCGAAT chr2R:14981177-14981297 82 8.88e-06 CACCGCGCTG CGGTCACA CCGAATTCAG chr3R:16996328-16996448 107 8.88e-06 CTTCCAGCGA CGGTCACA CTAACA chr2R:21011876-21011996 99 8.88e-06 TGTACGACGT CGGTCACA CTGGCAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25888368-25888488 8.9e-06 61_[+3]_51 chr3L:3896793-3896913 8.9e-06 99_[+3]_13 chr3R:6646819-6646939 8.9e-06 83_[+3]_29 chrX:15319370-15319490 8.9e-06 60_[+3]_52 chr2R:14981177-14981297 8.9e-06 81_[+3]_31 chr3R:16996328-16996448 8.9e-06 106_[+3]_6 chr2R:21011876-21011996 8.9e-06 98_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGTCACA width=8 seqs=7 chr3R:25888368-25888488 ( 62) CGGTCACA 1 chr3L:3896793-3896913 ( 100) CGGTCACA 1 chr3R:6646819-6646939 ( 84) CGGTCACA 1 chrX:15319370-15319490 ( 61) CGGTCACA 1 chr2R:14981177-14981297 ( 82) CGGTCACA 1 chr3R:16996328-16996448 ( 107) CGGTCACA 1 chr2R:21011876-21011996 ( 99) CGGTCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.7e+003 -945 230 -945 -945 -945 -945 234 -945 -945 -945 234 -945 -945 -945 -945 176 -945 230 -945 -945 172 -945 -945 -945 -945 230 -945 -945 172 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTCACA MEME-3 regular expression -------------------------------------------------------------------------------- CGGTCACA -------------------------------------------------------------------------------- Time 21.28 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGCTGCA MEME-4 width = 8 sites = 7 llr = 80 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 4::a::a: probability G 6aa::a:: matrix T ::::a::: bits 2.3 *** ** 2.1 *** ** 1.9 ****** 1.6 ******* Relative 1.4 ******** Entropy 1.2 ******** (16.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCTGCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21295594-21295714 42 5.58e-06 AACGCCACCA GGGCTGCA GACACGCCAG chr2R:6656347-6656467 64 5.58e-06 TTTGCTCAAG GGGCTGCA TCACATGCAA chr2R:21323987-21324107 90 5.58e-06 GGTTTGGCCA GGGCTGCA GCATCGGCAC chr2L:9494795-9494915 43 5.58e-06 TACATGCCCA GGGCTGCA TGAGAAAGAG chr3R:24333318-24333438 62 1.13e-05 GTGACCATTG CGGCTGCA GTGTGAACAG chr2L:3058920-3059040 22 1.13e-05 AAAGAAACTA CGGCTGCA CGATTCGTAT chr2R:21011876-21011996 46 1.13e-05 TCGCAACTAT CGGCTGCA TCGTGATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21295594-21295714 5.6e-06 41_[+4]_71 chr2R:6656347-6656467 5.6e-06 63_[+4]_49 chr2R:21323987-21324107 5.6e-06 89_[+4]_23 chr2L:9494795-9494915 5.6e-06 42_[+4]_70 chr3R:24333318-24333438 1.1e-05 61_[+4]_51 chr2L:3058920-3059040 1.1e-05 21_[+4]_91 chr2R:21011876-21011996 1.1e-05 45_[+4]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGCTGCA width=8 seqs=7 chr2R:21295594-21295714 ( 42) GGGCTGCA 1 chr2R:6656347-6656467 ( 64) GGGCTGCA 1 chr2R:21323987-21324107 ( 90) GGGCTGCA 1 chr2L:9494795-9494915 ( 43) GGGCTGCA 1 chr3R:24333318-24333438 ( 62) CGGCTGCA 1 chr2L:3058920-3059040 ( 22) CGGCTGCA 1 chr2R:21011876-21011996 ( 46) CGGCTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 2.7e+003 -945 108 153 -945 -945 -945 234 -945 -945 -945 234 -945 -945 230 -945 -945 -945 -945 -945 176 -945 -945 234 -945 -945 230 -945 -945 172 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.7e+003 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGCTGCA MEME-4 regular expression -------------------------------------------------------------------------------- [GC]GGCTGCA -------------------------------------------------------------------------------- Time 27.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCRGTG MEME-5 width = 8 sites = 11 llr = 113 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C :81a:3:: probability G a29:57:a matrix T ::::::a: bits 2.3 * * * 2.1 * * * 1.9 * ** ** 1.6 **** ** Relative 1.4 **** *** Entropy 1.2 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGGTG consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14580512-14580632 15 3.62e-06 GAATAGCTGA GCGCGGTG TGTGCACTTG chr3R:14904052-14904172 43 9.20e-06 ACACAACCGT GCGCAGTG GTGGTTCGCT chr3R:25168465-25168585 80 9.20e-06 AACCCGTTTT GCGCAGTG CACGAAATCT chr3R:15225479-15225599 48 9.20e-06 TAAAAATACC GCGCAGTG TCATCTCCAT chr3R:17526261-17526381 90 9.20e-06 AGGTTATTTC GCGCAGTG CACACCTAAC chrX:17738278-17738398 100 1.29e-05 TAACATCGCT GCGCGCTG CGCAAATGTT chr2R:6656347-6656467 33 1.29e-05 TGCCGATGCC GCGCGCTG TTGTCCAACA chr2L:10437466-10437586 43 1.64e-05 AGTATCGTTT GGGCGGTG ATAGTGCAAT chr3R:24031772-24031892 86 1.64e-05 AATATCAACT GGGCGGTG CGGGTAAAAT chrX:618783-618903 106 2.22e-05 CGCAGTCGCG GCGCACTG CCCGTTT chr2R:21295594-21295714 70 3.14e-05 AACAGTTTCG GCCCGGTG GCAGCGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14580512-14580632 3.6e-06 14_[+5]_98 chr3R:14904052-14904172 9.2e-06 42_[+5]_70 chr3R:25168465-25168585 9.2e-06 79_[+5]_33 chr3R:15225479-15225599 9.2e-06 47_[+5]_65 chr3R:17526261-17526381 9.2e-06 89_[+5]_23 chrX:17738278-17738398 1.3e-05 99_[+5]_13 chr2R:6656347-6656467 1.3e-05 32_[+5]_80 chr2L:10437466-10437586 1.6e-05 42_[+5]_70 chr3R:24031772-24031892 1.6e-05 85_[+5]_27 chrX:618783-618903 2.2e-05 105_[+5]_7 chr2R:21295594-21295714 3.1e-05 69_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCRGTG width=8 seqs=11 chrX:14580512-14580632 ( 15) GCGCGGTG 1 chr3R:14904052-14904172 ( 43) GCGCAGTG 1 chr3R:25168465-25168585 ( 80) GCGCAGTG 1 chr3R:15225479-15225599 ( 48) GCGCAGTG 1 chr3R:17526261-17526381 ( 90) GCGCAGTG 1 chrX:17738278-17738398 ( 100) GCGCGCTG 1 chr2R:6656347-6656467 ( 33) GCGCGCTG 1 chr2L:10437466-10437586 ( 43) GGGCGGTG 1 chr3R:24031772-24031892 ( 86) GGGCGGTG 1 chrX:618783-618903 ( 106) GCGCACTG 1 chr2R:21295594-21295714 ( 70) GCCCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 1.8e+004 -1010 -1010 234 -1010 -1010 201 -12 -1010 -1010 -116 220 -1010 -1010 230 -1010 -1010 58 -1010 146 -1010 -1010 43 188 -1010 -1010 -1010 -1010 176 -1010 -1010 234 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCRGTG MEME-5 regular expression -------------------------------------------------------------------------------- GCGC[GA][GC]TG -------------------------------------------------------------------------------- Time 33.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5745103-5745223 3.44e-03 120 chr3R:24626268-24626388 9.69e-01 120 chrX:3538906-3539026 6.99e-01 120 chr3R:16309411-16309531 1.62e-01 84_[+1(1.41e-05)]_28 chr3R:17777032-17777152 5.47e-02 75_[+1(5.24e-05)]_37 chr3R:21188163-21188283 7.10e-01 120 chrX:2136538-2136658 1.74e-03 120 chrX:8244370-8244490 2.11e-02 79_[+2(1.26e-05)]_33 chr2R:6157395-6157515 9.69e-01 120 chr2R:12173484-12173604 8.04e-02 120 chrX:16781265-16781385 4.62e-01 120 chr3R:20273698-20273818 3.68e-02 120 chr2R:20590742-20590862 2.69e-01 91_[+2(4.34e-05)]_21 chr3L:11293416-11293536 7.61e-03 106_[+2(4.07e-06)]_6 chr2R:21011876-21011996 6.95e-05 45_[+4(1.13e-05)]_45_[+3(8.88e-06)]_\ 14 chr3R:23331933-23332053 3.50e-01 120 chr3L:19190878-19190998 9.52e-01 120 chr2R:7653867-7653987 4.47e-01 120 chrX:13333064-13333184 6.51e-01 120 chr3L:18622485-18622605 6.48e-01 120 chr3R:17231644-17231764 5.31e-01 120 chr2R:10045664-10045784 1.58e-01 120 chr2L:8437298-8437418 4.82e-03 54_[+1(2.87e-05)]_58 chrX:19348961-19349081 7.82e-01 120 chr2R:21910012-21910132 7.06e-01 120 chr3R:9057002-9057122 8.30e-01 120 chr3L:10858702-10858822 5.00e-01 120 chr3R:16260469-16260589 2.47e-02 9_[+2(6.42e-05)]_103 chr2L:3058920-3059040 4.86e-02 21_[+4(1.13e-05)]_91 chr2R:11202153-11202273 8.61e-01 120 chr3R:17526261-17526381 5.06e-02 89_[+5(9.20e-06)]_23 chr2R:21183204-21183324 6.56e-02 120 chr3R:4804229-4804349 3.46e-01 120 chr3L:11113739-11113859 4.90e-01 120 chr2R:6870581-6870701 1.00e+00 120 chr3L:6086119-6086239 6.61e-01 120 chr4:835908-836028 1.09e-01 120 chr3R:30789515-30789635 1.53e-01 120 chr2R:10265448-10265568 6.76e-01 120 chr3L:17532207-17532327 1.08e-03 67_[+2(3.32e-05)]_35_[+4(2.84e-05)]_\ 2 chrX:21362949-21363069 5.81e-02 120 chr3R:26230290-26230410 5.98e-02 62_[+3(7.07e-05)]_50 chrX:2720248-2720368 4.33e-03 94_[+1(1.41e-05)]_18 chr3R:24031772-24031892 3.16e-02 85_[+5(1.64e-05)]_27 chr3R:26242702-26242822 9.40e-01 120 chrX:5084906-5085026 4.49e-01 120 chr3R:16996328-16996448 7.61e-04 63_[+2(4.95e-05)]_35_[+3(8.88e-06)]_\ 6 chr2R:14136814-14136934 8.40e-01 120 chr2L:3477350-3477470 6.02e-01 120 chr2L:7601990-7602110 9.99e-01 120 chr2L:1362364-1362484 1.91e-03 42_[+2(1.26e-05)]_17_[+2(1.26e-05)]_\ 45 chr2L:7571898-7572018 8.82e-01 120 chrX:4116858-4116978 2.27e-02 36_[+1(6.53e-05)]_76 chrX:15120231-15120351 8.81e-01 120 chr3R:5032196-5032316 7.96e-02 120 chrX:13281420-13281540 6.25e-02 120 chr3L:9614085-9614205 1.07e-02 92_[+2(2.28e-05)]_20 chr2R:18325091-18325211 1.98e-01 120 chrX:618783-618903 2.43e-03 105_[+5(2.22e-05)]_7 chr2R:9577941-9578061 3.92e-01 120 chr3R:29068965-29069085 3.35e-01 120 chr2R:12729398-12729518 4.26e-02 120 chr3R:32051855-32051975 1.61e-01 120 chrX:4366319-4366439 3.33e-01 120 chr2L:10736193-10736313 7.48e-01 120 chr2L:9448866-9448986 4.61e-02 120 chr2R:23970007-23970127 8.79e-01 120 chr2R:20641584-20641704 3.11e-01 120 chr2R:20582459-20582579 1.09e-02 90_[+2(1.26e-05)]_22 chr2R:6983869-6983989 6.97e-02 120 chr3R:18243724-18243844 6.32e-02 120 chr3R:14714298-14714418 3.87e-01 120 chr3R:30058115-30058235 6.67e-01 120 chr3R:20908776-20908896 4.52e-01 120 chrX:4498444-4498564 4.59e-01 120 chr2L:3888338-3888458 8.89e-01 120 chr2R:10066671-10066791 5.30e-01 120 chrX:17510653-17510773 9.89e-01 120 chrX:3136848-3136968 3.69e-01 120 chrX:17175873-17175993 5.23e-01 120 chr2R:12198852-12198972 1.64e-02 101_[+2(3.32e-05)]_11 chr2R:14604280-14604400 5.34e-01 120 chr2L:8982736-8982856 9.66e-01 120 chr2L:9494795-9494915 3.00e-03 42_[+4(5.58e-06)]_17_[+4(8.13e-05)]_\ 45 chr2L:22121760-22121880 1.50e-01 120 chr2L:892591-892711 1.23e-01 120 chr2R:12569826-12569946 8.99e-03 44_[+1(2.01e-05)]_68 chr2L:16816090-16816210 3.19e-02 45_[+2(4.07e-06)]_67 chr3L:3449763-3449883 2.26e-01 120 chr3R:31053882-31054002 1.19e-02 55_[+1(8.63e-05)]_37_[+1(1.41e-05)]_\ 12 chr2R:23385740-23385860 4.00e-01 120 chr3L:1618214-1618334 6.12e-01 120 chr2L:1428512-1428632 8.98e-01 120 chr3R:21161867-21161987 8.11e-01 120 chrX:3134420-3134540 9.85e-01 120 chr3R:26952328-26952448 5.82e-01 120 chr3R:30814938-30815058 8.70e-01 120 chr3L:2572151-2572271 7.53e-02 58_[+2(7.09e-05)]_54 chrX:13626038-13626158 7.78e-01 120 chr2R:24943162-24943282 3.69e-01 120 chr3R:30802308-30802428 6.41e-02 120 chr3R:15644827-15644947 3.97e-01 120 chr2R:13586383-13586503 3.23e-01 120 chrX:14580512-14580632 7.52e-03 14_[+5(3.62e-06)]_98 chrX:10601551-10601671 1.29e-02 120 chr3R:21140570-21140690 9.75e-01 120 chr2R:16097080-16097200 1.00e+00 120 chr2L:203692-203812 5.18e-01 120 chr2L:5542297-5542417 5.36e-01 120 chr2L:13461097-13461217 9.92e-01 120 chr2R:14981177-14981297 2.85e-03 81_[+3(8.88e-06)]_31 chr2R:11629981-11630101 4.06e-01 120 chr2R:9544861-9544981 1.15e-01 120 chr2L:4133280-4133400 9.26e-01 120 chr2R:21323987-21324107 2.85e-03 89_[+4(5.58e-06)]_23 chrX:17582826-17582946 7.93e-01 120 chrX:15319370-15319490 1.60e-03 60_[+3(8.88e-06)]_52 chr2R:16322135-16322255 2.49e-01 120 chr3L:9899175-9899295 1.77e-01 120 chr2R:20601230-20601350 3.83e-01 120 chrX:7901772-7901892 2.96e-04 25_[+2(4.07e-06)]_42_[+1(2.87e-05)]_\ 37 chr2L:14359098-14359218 9.79e-01 120 chr3R:16655810-16655930 8.49e-01 120 chrX:11451145-11451265 9.59e-01 120 chrX:12631489-12631609 2.19e-01 120 chr3R:30022674-30022794 9.94e-05 42_[+2(4.07e-06)]_59_[+1(2.01e-05)]_\ 3 chr3L:16045393-16045513 1.86e-01 120 chr3R:31747552-31747672 5.40e-03 72_[+1(5.24e-05)]_40 chr2L:22169249-22169369 9.99e-01 120 chr2L:10304008-10304128 7.65e-01 120 chr3L:8110283-8110403 9.70e-03 58_[+5(6.53e-05)]_54 chr2R:24046825-24046945 3.74e-01 120 chr2L:10437466-10437586 6.55e-02 42_[+5(1.64e-05)]_70 chr2R:6656347-6656467 1.21e-04 32_[+5(1.29e-05)]_23_[+4(5.58e-06)]_\ 49 chr2R:7636702-7636822 6.59e-04 20_[+4(5.44e-05)]_64_[+5(5.97e-05)]_\ 20 chr3R:21073312-21073432 3.82e-05 2_[+1(5.76e-06)]_67_[+2(6.70e-06)]_\ 35 chr3L:7861200-7861320 8.66e-01 120 chr3R:16338459-16338579 5.06e-01 120 chr3L:19000613-19000733 1.99e-01 120 chrX:18370821-18370941 5.18e-03 50_[+1(4.35e-05)]_62 chr3L:21821862-21821982 1.74e-01 120 chr3R:6646819-6646939 2.67e-03 83_[+3(8.88e-06)]_29 chr3L:3896793-3896913 8.72e-06 59_[+1(5.76e-06)]_32_[+3(8.88e-06)]_\ 13 chr2R:23818380-23818500 1.05e-01 120 chr3L:3818614-3818734 7.84e-02 120 chr2R:5757665-5757785 2.36e-01 120 chr2L:16690143-16690263 9.26e-01 120 chr2R:9989046-9989166 3.52e-02 26_[+1(2.87e-05)]_86 chr3L:3336878-3336998 1.10e-01 120 chr3R:15225479-15225599 1.24e-01 47_[+5(9.20e-06)]_65 chr2L:8738342-8738462 6.35e-03 80_[+1(7.40e-05)]_32 chr3R:18274560-18274680 8.97e-03 71_[+1(5.76e-06)]_41 chr3R:25888368-25888488 5.64e-03 61_[+3(8.88e-06)]_51 chr3R:25168465-25168585 3.03e-02 79_[+5(9.20e-06)]_33 chrX:18635416-18635536 4.39e-01 120 chr2R:11178530-11178650 4.50e-01 120 chrX:2149672-2149792 4.35e-01 120 chrX:1880354-1880474 6.53e-01 120 chr2L:20918860-20918980 5.23e-01 120 chrX:5892214-5892334 8.23e-01 120 chr2L:7702604-7702724 7.66e-01 120 chr2R:10899029-10899149 2.50e-02 120 chr2L:8364658-8364778 6.86e-01 120 chr2L:12369663-12369783 9.28e-01 120 chrX:10600657-10600777 7.49e-01 120 chr2R:10555609-10555729 2.26e-01 120 chr3R:6007476-6007596 8.80e-03 104_[+2(9.05e-05)]_8 chr3L:12803782-12803902 8.23e-01 120 chr2L:21260951-21261071 5.91e-01 120 chr3L:1350626-1350746 9.88e-01 120 chrX:16782266-16782386 2.12e-02 120 chr2R:23176759-23176879 7.29e-02 120 chr2L:19935249-19935369 8.58e-03 18_[+1(3.76e-05)]_94 chrX:16610728-16610848 2.40e-01 120 chr3R:23722098-23722218 1.62e-01 120 chr3R:8233426-8233546 2.36e-04 28_[+1(5.76e-06)]_84 chrX:9137292-9137412 5.37e-01 120 chr3L:5152644-5152764 3.97e-03 32_[+5(6.53e-05)]_80 chr3L:21136049-21136169 1.40e-03 88_[+1(5.76e-06)]_24 chr3L:12414804-12414924 6.60e-02 120 chr3R:27273645-27273765 1.14e-02 52_[+2(4.34e-05)]_60 chrX:19643241-19643361 7.23e-04 120 chr2L:6797544-6797664 5.87e-03 29_[+2(4.07e-06)]_83 chr3R:4714191-4714311 7.49e-01 120 chr2L:16703862-16703982 9.54e-01 120 chr3L:10745750-10745870 9.80e-01 120 chr2R:20906637-20906757 6.38e-02 120 chr2L:1614191-1614311 2.32e-03 38_[+1(5.76e-06)]_17_[+1(2.87e-05)]_\ 49 chrX:11137696-11137816 6.26e-01 120 chr2R:18277277-18277397 7.68e-01 120 chr2L:10767938-10768058 5.72e-03 3_[+1(8.63e-05)]_109 chr2L:13833201-13833321 8.19e-01 120 chr3R:6457073-6457193 8.04e-01 120 chr3L:13486752-13486872 3.41e-01 120 chr3R:20574761-20574881 2.07e-02 104_[+1(3.76e-05)]_8 chr2L:283243-283363 1.89e-01 63_[+2(2.28e-05)]_49 chrX:10067669-10067789 9.04e-01 120 chr3R:30889130-30889250 5.05e-01 120 chr2R:15381238-15381358 9.96e-01 120 chr2L:11829396-11829516 1.42e-02 68_[+5(6.53e-05)]_44 chr2R:24743617-24743737 3.41e-02 120 chr3R:13683813-13683933 5.16e-01 120 chr3L:21445745-21445865 4.63e-01 120 chr2L:4394068-4394188 8.70e-01 120 chr2R:8615284-8615404 6.27e-01 120 chr3L:4186834-4186954 4.16e-01 120 chr2R:21295594-21295714 2.40e-05 41_[+4(5.58e-06)]_20_[+5(3.14e-05)]_\ 43 chr2R:24086531-24086651 4.71e-01 120 chr3R:14904052-14904172 5.02e-04 42_[+5(9.20e-06)]_19_[+1(8.63e-05)]_\ 43 chr3R:6406703-6406823 8.18e-01 120 chr2L:207277-207397 1.44e-03 26_[+1(5.76e-06)]_17_[+1(2.01e-05)]_\ 61 chr2R:16170818-16170938 1.53e-01 120 chr2R:16571751-16571871 5.88e-01 120 chr2L:21658638-21658758 7.67e-01 120 chrX:3719807-3719927 3.86e-01 120 chr3R:10696532-10696652 8.79e-01 120 chrX:17738278-17738398 4.96e-04 99_[+5(1.29e-05)]_13 chr2L:8488905-8489025 4.80e-01 120 chr2R:7490378-7490498 1.65e-01 120 chr3L:3090749-3090869 5.39e-01 120 chr3L:11580057-11580177 3.85e-01 120 chr3R:16431781-16431901 1.11e-02 24_[+2(1.26e-05)]_88 chr2L:6357060-6357180 2.00e-01 86_[+1(8.63e-05)]_26 chr3L:5789877-5789997 8.35e-01 120 chr2R:21134558-21134678 2.60e-01 120 chr2R:12636610-12636730 2.53e-03 30_[+2(2.28e-05)]_82 chr3L:1731040-1731160 7.09e-02 120 chr3R:22133795-22133915 6.46e-02 120 chr2R:22807002-22807122 4.87e-01 120 chr3L:13922478-13922598 8.67e-01 120 chr2L:10989327-10989447 1.05e-02 120 chrX:20257326-20257446 5.13e-03 90_[+4(8.13e-05)]_22 chr2R:16178550-16178670 8.13e-02 120 chr3R:5856438-5856558 2.76e-01 120 chr2R:5122238-5122358 5.32e-01 120 chrX:5883532-5883652 9.30e-03 15_[+1(1.41e-05)]_97 chrX:14602678-14602798 2.55e-02 40_[+4(2.84e-05)]_72 chr3R:21856119-21856239 7.92e-01 120 chr2R:22374996-22375116 5.32e-02 36_[+1(1.41e-05)]_76 chr2R:11275696-11275816 2.28e-01 120 chr3R:24333318-24333438 7.48e-03 61_[+4(1.13e-05)]_51 chr4:406979-407099 5.93e-01 120 chr3L:10899343-10899463 5.17e-02 120 chr2L:20950800-20950920 1.02e-01 57_[+4(2.84e-05)]_55 chrX:1380455-1380575 1.76e-05 63_[+1(2.87e-05)]_5_[+5(4.63e-05)]_\ 36 chr3R:9038800-9038920 5.65e-01 120 chr2L:19867132-19867252 9.73e-01 120 chr3L:13923455-13923575 9.98e-01 120 chrX:2536266-2536386 4.16e-01 120 chrX:17751857-17751977 1.34e-02 17_[+2(7.09e-05)]_48_[+2(3.32e-05)]_\ 39 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************