******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/lz.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:10772062-10772182 1.0000 120 chr2R:18610432-18610552 1.0000 120 chr3R:9913558-9913678 1.0000 120 chr3L:10359533-10359653 1.0000 120 chr3R:16985693-16985813 1.0000 120 chrX:5608646-5608766 1.0000 120 chr2R:16685720-16685840 1.0000 120 chr3R:13793455-13793575 1.0000 120 chr3R:26192400-26192520 1.0000 120 chr2R:20136846-20136966 1.0000 120 chr2R:10237818-10237938 1.0000 120 chr2L:9438378-9438498 1.0000 120 chr3R:31308964-31309084 1.0000 120 chr3R:27593357-27593477 1.0000 120 chr3R:4961580-4961700 1.0000 120 chrX:5026174-5026294 1.0000 120 chrX:9251412-9251532 1.0000 120 chr3R:31505307-31505427 1.0000 120 chr3R:8029764-8029884 1.0000 120 chr2L:7992091-7992211 1.0000 120 chr3L:5637621-5637741 1.0000 120 chr3L:18276044-18276164 1.0000 120 chr3R:8116069-8116189 1.0000 120 chrX:17545684-17545804 1.0000 120 chr3R:27140064-27140184 1.0000 120 chrX:6022253-6022373 1.0000 120 chr3R:23148532-23148652 1.0000 120 chr3L:21099195-21099315 1.0000 120 chrX:8255056-8255176 1.0000 120 chr3R:30843885-30844005 1.0000 120 chr3R:8968948-8969068 1.0000 120 chr3L:3246890-3247010 1.0000 120 chrX:5025452-5025572 1.0000 120 chrX:6030156-6030276 1.0000 120 chr2L:11222225-11222345 1.0000 120 chr3R:29778275-29778395 1.0000 120 chr2L:7973959-7974079 1.0000 120 chr2R:21569764-21569884 1.0000 120 chrX:22479462-22479582 1.0000 120 chrX:13541331-13541451 1.0000 120 chr2L:11220907-11221027 1.0000 120 chr2R:17613850-17613970 1.0000 120 chrX:1320561-1320681 1.0000 120 chrX:12507717-12507837 1.0000 120 chr3R:23191593-23191713 1.0000 120 chr2L:3554065-3554185 1.0000 120 chr3L:785872-785992 1.0000 120 chr2L:700965-701085 1.0000 120 chr3R:30689866-30689986 1.0000 120 chr2L:10791434-10791554 1.0000 120 chr3L:6471969-6472089 1.0000 120 chrX:2452895-2453015 1.0000 120 chr2L:650984-651104 1.0000 120 chr3R:31688857-31688977 1.0000 120 chrX:9892997-9893117 1.0000 120 chr2L:11871041-11871161 1.0000 120 chr3R:22628046-22628166 1.0000 120 chr3L:727339-727459 1.0000 120 chr3L:6771333-6771453 1.0000 120 chr3L:3612756-3612876 1.0000 120 chr2L:9736132-9736252 1.0000 120 chr3R:10579695-10579815 1.0000 120 chr3R:21935316-21935436 1.0000 120 chrX:9317261-9317381 1.0000 120 chr2R:6969514-6969634 1.0000 120 chr3L:5630277-5630397 1.0000 120 chrX:14750549-14750669 1.0000 120 chrX:19164894-19165014 1.0000 120 chrX:3381139-3381259 1.0000 120 chr2R:23014876-23014996 1.0000 120 chrX:17490008-17490128 1.0000 120 chrX:13936329-13936449 1.0000 120 chr3L:761846-761966 1.0000 120 chr3R:8142245-8142365 1.0000 120 chrX:15552567-15552687 1.0000 120 chr2R:14467069-14467189 1.0000 120 chrX:17760677-17760797 1.0000 120 chr3R:10530685-10530805 1.0000 120 chr3L:1457421-1457541 1.0000 120 chr3R:25461811-25461931 1.0000 120 chr3L:6446730-6446850 1.0000 120 chr3L:14453331-14453451 1.0000 120 chr3R:29762472-29762592 1.0000 120 chr2L:15281086-15281206 1.0000 120 chr3R:31505507-31505627 1.0000 120 chr3R:8272719-8272839 1.0000 120 chrX:3060208-3060328 1.0000 120 chr2L:17782059-17782179 1.0000 120 chr3R:4883988-4884108 1.0000 120 chr2R:19849228-19849348 1.0000 120 chr2R:10600486-10600606 1.0000 120 chr3L:17502337-17502457 1.0000 120 chrX:2788689-2788809 1.0000 120 chr3R:27171284-27171404 1.0000 120 chrX:12015128-12015248 1.0000 120 chr3R:11888400-11888520 1.0000 120 chr2L:7574462-7574582 1.0000 120 chr3R:28633903-28634023 1.0000 120 chr3L:388259-388379 1.0000 120 chr3L:1829654-1829774 1.0000 120 chr2R:19969866-19969986 1.0000 120 chrX:17814965-17815085 1.0000 120 chr3R:30076219-30076339 1.0000 120 chr2L:3341748-3341868 1.0000 120 chr3R:31956422-31956542 1.0000 120 chr3R:31225144-31225264 1.0000 120 chrX:17571037-17571157 1.0000 120 chrX:13568324-13568444 1.0000 120 chrX:21073794-21073914 1.0000 120 chr2R:11515864-11515984 1.0000 120 chr3L:728017-728137 1.0000 120 chr3L:14055415-14055535 1.0000 120 chrX:8667872-8667992 1.0000 120 chr3L:11297712-11297832 1.0000 120 chrX:5044558-5044678 1.0000 120 chrX:7892607-7892727 1.0000 120 chr3R:23486885-23487005 1.0000 120 chr2L:7376296-7376416 1.0000 120 chrX:19162381-19162501 1.0000 120 chr3L:11322618-11322738 1.0000 120 chr3R:30501268-30501388 1.0000 120 chr3R:11614650-11614770 1.0000 120 chr2R:15513545-15513665 1.0000 120 chr3L:18241051-18241171 1.0000 120 chrX:20509621-20509741 1.0000 120 chr2R:16156411-16156531 1.0000 120 chr3R:13934729-13934849 1.0000 120 chrX:12760835-12760955 1.0000 120 chrX:17229874-17229994 1.0000 120 chr2L:675056-675176 1.0000 120 chrX:2365551-2365671 1.0000 120 chr2R:6556902-6557022 1.0000 120 chrX:3411942-3412062 1.0000 120 chr2R:19171759-19171879 1.0000 120 chr3R:9934991-9935111 1.0000 120 chrX:16102459-16102579 1.0000 120 chr2L:1362357-1362477 1.0000 120 chr2L:9448823-9448943 1.0000 120 chr2R:8650544-8650664 1.0000 120 chr3R:31680032-31680152 1.0000 120 chr2L:18466309-18466429 1.0000 120 chr2L:11968709-11968829 1.0000 120 chr3L:17608652-17608772 1.0000 120 chr3R:30281407-30281527 1.0000 120 chr3R:30280441-30280561 1.0000 120 chr3L:660470-660590 1.0000 120 chr2R:12741714-12741834 1.0000 120 chr3R:21648608-21648728 1.0000 120 chr3L:16024796-16024916 1.0000 120 chr3R:21887610-21887730 1.0000 120 chr2L:7419523-7419643 1.0000 120 chr3R:11947228-11947348 1.0000 120 chr3L:13021848-13021968 1.0000 120 chrX:16761623-16761743 1.0000 120 chr3L:10794020-10794140 1.0000 120 chr3R:13941530-13941650 1.0000 120 chrX:2648085-2648205 1.0000 120 chr2L:423303-423423 1.0000 120 chrX:18834509-18834629 1.0000 120 chr3R:15596056-15596176 1.0000 120 chr3L:6359335-6359455 1.0000 120 chr2R:18305361-18305481 1.0000 120 chr2L:19162885-19163005 1.0000 120 chr2L:15743727-15743847 1.0000 120 chrX:3289473-3289593 1.0000 120 chr3R:30811349-30811469 1.0000 120 chr3L:1374599-1374719 1.0000 120 chr3L:758719-758839 1.0000 120 chrX:6059294-6059414 1.0000 120 chr2R:8195133-8195253 1.0000 120 chr2L:9829032-9829152 1.0000 120 chr2L:11306237-11306357 1.0000 120 chr3R:27186322-27186442 1.0000 120 chr3R:25634018-25634138 1.0000 120 chr3R:14755205-14755325 1.0000 120 chr3R:5100458-5100578 1.0000 120 chrX:10104623-10104743 1.0000 120 chr3L:3343432-3343552 1.0000 120 chr2L:11066141-11066261 1.0000 120 chr2R:16812240-16812360 1.0000 120 chr3R:22194888-22195008 1.0000 120 chr3L:20403703-20403823 1.0000 120 chr3L:11414589-11414709 1.0000 120 chr3L:3513198-3513318 1.0000 120 chr3L:5863072-5863192 1.0000 120 chr3R:22195855-22195975 1.0000 120 chr3L:8913655-8913775 1.0000 120 chr2L:8950354-8950474 1.0000 120 chrX:7526232-7526352 1.0000 120 chr2L:18628272-18628392 1.0000 120 chr3L:1031072-1031192 1.0000 120 chr3R:4667515-4667635 1.0000 120 chr3L:16974795-16974915 1.0000 120 chr3L:15762983-15763103 1.0000 120 chr2R:20206687-20206807 1.0000 120 chr3R:13861937-13862057 1.0000 120 chr3R:18990574-18990694 1.0000 120 chrX:13312288-13312408 1.0000 120 chrX:5786647-5786767 1.0000 120 chr2L:5493076-5493196 1.0000 120 chr3R:31682257-31682377 1.0000 120 chr2R:14968002-14968122 1.0000 120 chr2L:5249908-5250028 1.0000 120 chrX:17510242-17510362 1.0000 120 chr3R:14498243-14498363 1.0000 120 chrX:21074459-21074579 1.0000 120 chr3L:664020-664140 1.0000 120 chr2R:17458928-17459048 1.0000 120 chr2R:9497098-9497218 1.0000 120 chr3R:22175802-22175922 1.0000 120 chr2L:18648337-18648457 1.0000 120 chr2R:14513660-14513780 1.0000 120 chr3R:14430411-14430531 1.0000 120 chr2R:17851609-17851729 1.0000 120 chr3L:18065171-18065291 1.0000 120 chr2L:2931891-2932011 1.0000 120 chr3L:1388232-1388352 1.0000 120 chr3R:4873868-4873988 1.0000 120 chr2R:9064686-9064806 1.0000 120 chr3L:19046553-19046673 1.0000 120 chr2R:9674783-9674903 1.0000 120 chr3R:29096112-29096232 1.0000 120 chr3L:7792346-7792466 1.0000 120 chr2L:10616089-10616209 1.0000 120 chr2R:21569039-21569159 1.0000 120 chr2L:5501467-5501587 1.0000 120 chr2L:9493424-9493544 1.0000 120 chr3L:14253666-14253786 1.0000 120 chr3L:9742386-9742506 1.0000 120 chr3R:6397812-6397932 1.0000 120 chrX:5923259-5923379 1.0000 120 chr3R:6950255-6950375 1.0000 120 chrX:13137191-13137311 1.0000 120 chr2L:19397762-19397882 1.0000 120 chr2R:23299488-23299608 1.0000 120 chr3R:15899786-15899906 1.0000 120 chr2L:3781599-3781719 1.0000 120 chr3R:30284680-30284800 1.0000 120 chr2R:12532739-12532859 1.0000 120 chr3R:30134809-30134929 1.0000 120 chr2R:24548108-24548228 1.0000 120 chr2R:21039402-21039522 1.0000 120 chrX:3681035-3681155 1.0000 120 chr3R:5060403-5060523 1.0000 120 chr2L:18645604-18645724 1.0000 120 chr2L:6165878-6165998 1.0000 120 chr3L:16408628-16408748 1.0000 120 chr2R:23385707-23385827 1.0000 120 chr2R:25031977-25032097 1.0000 120 chrX:7945535-7945655 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_lz/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/lz.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.339 C 0.157 G 0.159 T 0.345 Background letter frequencies (from file dataset with add-one prior applied): A 0.339 C 0.157 G 0.159 T 0.345 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGCWGTG MEME-1 width = 8 sites = 29 llr = 257 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::6::: pos.-specific C :1:a::1: probability G 21a::8:a matrix T 88::429: bits 2.7 * * 2.4 ** * 2.1 ** * 1.9 ** * Relative 1.6 ** * * Entropy 1.3 ** * * (12.8 bits) 1.1 * ** *** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGCAGTG consensus G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6397812-6397932 22 8.79e-06 cactactcag ttgcagtg caagggagaa chr3L:14253666-14253786 83 8.79e-06 AGTAATTTTT TTGCAGTG TATATTTGCC chr3L:20403703-20403823 30 8.79e-06 TAACTGCAGT TTGCAGTG GGAAGATTAT chr3R:25634018-25634138 107 8.79e-06 TAATATCTTC TTGCAGTG TGGAAG chr3L:18241051-18241171 108 8.79e-06 CAAATATGAA TTGCAGTG ATAAA chrX:3681035-3681155 47 1.77e-05 AAAAGTCTTC TTGCTGTG CTCTTTTTTT chr3L:3513198-3513318 85 1.77e-05 AAAAAATCTA TTGCTGTG ATAATTGCTA chr3L:11414589-11414709 9 1.77e-05 TTAATTCA TTGCTGTG CGCATGGTCA chr2L:15743727-15743847 101 1.77e-05 TGGCCCAAGT TTGCTGTG TTGCTTCAGT chr2R:20136846-20136966 80 2.18e-05 CTTGGCCAAA GTGCAGTG ACCTCTTACA chrX:17760677-17760797 2 2.59e-05 A GTGCTGTG GCCACAACAA chr3L:16408628-16408748 93 3.79e-05 TTCATTTTTT TCGCAGTG TAAGAGTcag chr2L:5249908-5250028 97 3.79e-05 GCATCGTTTT TGGCAGTG TGGCAAACGA chr3R:31680032-31680152 7 3.79e-05 AAAAAC TGGCAGTG GCAATCGCTG chrX:21073794-21073914 4 3.79e-05 TTA TTGCAGCG AGTCATTATT chrX:2452895-2453015 66 5.02e-05 AACCAAGACT TGGCTGTG ATTCAGCTAA chr2R:16685720-16685840 29 5.02e-05 AGCAGATAAC TCGCTGTG TGCCCTTGAA chr2L:8950354-8950474 79 7.48e-05 TTTAAACTTT TTGCATTG ATTTTATAAT chr3L:758719-758839 112 7.48e-05 GCTTTTCTGA GTGCAGCG T chrX:2648085-2648205 46 7.48e-05 TGATCTCCCA GCGCAGTG GAGCCAAAGT chr3R:30843885-30844005 97 7.48e-05 CTTTTCATTG TTGCATTG TTTTTGGTGT chrX:8255056-8255176 79 7.48e-05 AGAACTTGAT TTGCATTG GCGTATTGCT chr3R:4873868-4873988 34 1.04e-04 CAATTTTCAA TTGCTTTG GACCTAACGA chr3L:1388232-1388352 39 1.04e-04 AGTTTAAAAG TTGCAGGG GTCTCCCATT chrX:5786647-5786767 100 1.04e-04 AAATATTCGT TTGCTTTG TAATATTATA chr3L:8913655-8913775 6 1.04e-04 ACAGT TTGCTTTG GAAACCATCG chr3R:31956422-31956542 13 1.04e-04 TAGACAACAT GTGCTGCG ATCCTTATAC chr2R:17613850-17613970 94 1.13e-04 TCTGGAGATC GTGCATTG GAACTTGCGG chr3R:30280441-30280561 80 1.72e-04 TTGATAAAAC TTCCAGTG GCTTCAGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6397812-6397932 8.8e-06 21_[+1]_91 chr3L:14253666-14253786 8.8e-06 82_[+1]_30 chr3L:20403703-20403823 8.8e-06 29_[+1]_83 chr3R:25634018-25634138 8.8e-06 106_[+1]_6 chr3L:18241051-18241171 8.8e-06 107_[+1]_5 chrX:3681035-3681155 1.8e-05 46_[+1]_66 chr3L:3513198-3513318 1.8e-05 84_[+1]_28 chr3L:11414589-11414709 1.8e-05 8_[+1]_104 chr2L:15743727-15743847 1.8e-05 100_[+1]_12 chr2R:20136846-20136966 2.2e-05 79_[+1]_33 chrX:17760677-17760797 2.6e-05 1_[+1]_111 chr3L:16408628-16408748 3.8e-05 92_[+1]_20 chr2L:5249908-5250028 3.8e-05 96_[+1]_16 chr3R:31680032-31680152 3.8e-05 6_[+1]_106 chrX:21073794-21073914 3.8e-05 3_[+1]_109 chrX:2452895-2453015 5e-05 65_[+1]_47 chr2R:16685720-16685840 5e-05 28_[+1]_84 chr2L:8950354-8950474 7.5e-05 78_[+1]_34 chr3L:758719-758839 7.5e-05 111_[+1]_1 chrX:2648085-2648205 7.5e-05 45_[+1]_67 chr3R:30843885-30844005 7.5e-05 96_[+1]_16 chrX:8255056-8255176 7.5e-05 78_[+1]_34 chr3R:4873868-4873988 0.0001 33_[+1]_79 chr3L:1388232-1388352 0.0001 38_[+1]_74 chrX:5786647-5786767 0.0001 99_[+1]_13 chr3L:8913655-8913775 0.0001 5_[+1]_107 chr3R:31956422-31956542 0.0001 12_[+1]_100 chr2R:17613850-17613970 0.00011 93_[+1]_19 chr3R:30280441-30280561 0.00017 79_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCWGTG width=8 seqs=29 chr3R:6397812-6397932 ( 22) TTGCAGTG 1 chr3L:14253666-14253786 ( 83) TTGCAGTG 1 chr3L:20403703-20403823 ( 30) TTGCAGTG 1 chr3R:25634018-25634138 ( 107) TTGCAGTG 1 chr3L:18241051-18241171 ( 108) TTGCAGTG 1 chrX:3681035-3681155 ( 47) TTGCTGTG 1 chr3L:3513198-3513318 ( 85) TTGCTGTG 1 chr3L:11414589-11414709 ( 9) TTGCTGTG 1 chr2L:15743727-15743847 ( 101) TTGCTGTG 1 chr2R:20136846-20136966 ( 80) GTGCAGTG 1 chrX:17760677-17760797 ( 2) GTGCTGTG 1 chr3L:16408628-16408748 ( 93) TCGCAGTG 1 chr2L:5249908-5250028 ( 97) TGGCAGTG 1 chr3R:31680032-31680152 ( 7) TGGCAGTG 1 chrX:21073794-21073914 ( 4) TTGCAGCG 1 chrX:2452895-2453015 ( 66) TGGCTGTG 1 chr2R:16685720-16685840 ( 29) TCGCTGTG 1 chr2L:8950354-8950474 ( 79) TTGCATTG 1 chr3L:758719-758839 ( 112) GTGCAGCG 1 chrX:2648085-2648205 ( 46) GCGCAGTG 1 chr3R:30843885-30844005 ( 97) TTGCATTG 1 chrX:8255056-8255176 ( 79) TTGCATTG 1 chr3R:4873868-4873988 ( 34) TTGCTTTG 1 chr3L:1388232-1388352 ( 39) TTGCAGGG 1 chrX:5786647-5786767 ( 100) TTGCTTTG 1 chr3L:8913655-8913775 ( 6) TTGCTTTG 1 chr3R:31956422-31956542 ( 13) GTGCTGCG 1 chr2R:17613850-17613970 ( 94) GTGCATTG 1 chr3R:30280441-30280561 ( 80) TTCCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 1.5e+002 -1150 -1150 38 120 -1150 -61 -62 120 -1150 -219 260 -1150 -1150 267 -1150 -1150 87 -1150 -1150 14 -1150 -1150 225 -51 -1150 -61 -220 132 -1150 -1150 265 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.5e+002 0.000000 0.000000 0.206897 0.793103 0.000000 0.103448 0.103448 0.793103 0.000000 0.034483 0.965517 0.000000 0.000000 1.000000 0.000000 0.000000 0.620690 0.000000 0.000000 0.379310 0.000000 0.000000 0.758621 0.241379 0.000000 0.103448 0.034483 0.862069 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCWGTG MEME-1 regular expression -------------------------------------------------------------------------------- [TG]TGC[AT][GT]TG -------------------------------------------------------------------------------- Time 7.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-2 width = 8 sites = 7 llr = 79 E-value = 9.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::9::1:: pos.-specific C 1a:1a1:a probability G 9::9::a: matrix T ::1::7:: bits 2.7 * * ** 2.4 * * ** 2.1 ** ** ** 1.9 ** ** ** Relative 1.6 ** ** ** Entropy 1.3 ** ** ** (16.3 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9317261-9317381 70 1.82e-06 TGGATATTAT GCAGCTGC TGTAAAATTA chrX:9251412-9251532 18 1.82e-06 ACCAGGAAAT GCAGCTGC GGCCACAATA chrX:8667872-8667992 19 2.65e-06 ATTTATGCTT GCAGCCGC ATAACAATCT chr3L:16408628-16408748 110 4.43e-06 GTAAGAGTca gcagcagc aga chr3L:11414589-11414709 51 8.03e-06 AAAAAGGTGA CCAGCTGC ATATAGAAAA chr2R:10772062-10772182 24 8.03e-06 CGCTTTTATT GCACCTGC TTACTCACTT chr3R:9934991-9935111 99 9.88e-06 CGATTTGACT GCTGCTGC CATTTGAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9317261-9317381 1.8e-06 69_[+2]_43 chrX:9251412-9251532 1.8e-06 17_[+2]_95 chrX:8667872-8667992 2.6e-06 18_[+2]_94 chr3L:16408628-16408748 4.4e-06 109_[+2]_3 chr3L:11414589-11414709 8e-06 50_[+2]_62 chr2R:10772062-10772182 8e-06 23_[+2]_89 chr3R:9934991-9935111 9.9e-06 98_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=7 chrX:9317261-9317381 ( 70) GCAGCTGC 1 chrX:9251412-9251532 ( 18) GCAGCTGC 1 chrX:8667872-8667992 ( 19) GCAGCCGC 1 chr3L:16408628-16408748 ( 110) GCAGCAGC 1 chr3L:11414589-11414709 ( 51) CCAGCTGC 1 chr2R:10772062-10772182 ( 24) GCACCTGC 1 chr3R:9934991-9935111 ( 99) GCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 9.8e+003 -945 -14 243 -945 -945 267 -945 -945 134 -945 -945 -127 -945 -14 243 -945 -945 267 -945 -945 -124 -14 -945 105 -945 -945 265 -945 -945 267 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.8e+003 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.142857 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-2 regular expression -------------------------------------------------------------------------------- GCAGCTGC -------------------------------------------------------------------------------- Time 14.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCACMGC MEME-3 width = 8 sites = 5 llr = 60 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::6:4:: pos.-specific C a:a2a4:a probability G :a:2:2a: matrix T :::::::: bits 2.7 *** * ** 2.4 *** * ** 2.1 *** * ** 1.9 *** * ** Relative 1.6 *** * ** Entropy 1.3 *** * ** (17.3 bits) 1.1 *** * ** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCACAGC consensus C C sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19162885-19163005 111 8.18e-07 TTTTGACATA CGCACCGC AC chr3R:16985693-16985813 98 1.58e-06 TAAGTCAGTG CGCCCCGC TGTTAAGAGG chr3R:11614650-11614770 52 4.17e-06 ACGAATGAGA CGCACAGC TTTTGTTTTC chr2L:7574462-7574582 90 4.17e-06 TGTAGCGACT CGCACAGC TCGTGTTACC chr3R:30689866-30689986 85 4.94e-06 TGGCCGCTTT CGCGCGGC CATCGTATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19162885-19163005 8.2e-07 110_[+3]_2 chr3R:16985693-16985813 1.6e-06 97_[+3]_15 chr3R:11614650-11614770 4.2e-06 51_[+3]_61 chr2L:7574462-7574582 4.2e-06 89_[+3]_23 chr3R:30689866-30689986 4.9e-06 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCACMGC width=8 seqs=5 chr2L:19162885-19163005 ( 111) CGCACCGC 1 chr3R:16985693-16985813 ( 98) CGCCCCGC 1 chr3R:11614650-11614770 ( 52) CGCACAGC 1 chr2L:7574462-7574582 ( 90) CGCACAGC 1 chr3R:30689866-30689986 ( 85) CGCGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.1e+004 -897 266 -897 -897 -897 -897 265 -897 -897 266 -897 -897 82 34 33 -897 -897 266 -897 -897 24 134 33 -897 -897 -897 265 -897 -897 266 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.200000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.400000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACMGC MEME-3 regular expression -------------------------------------------------------------------------------- CGC[ACG]C[ACG]GC -------------------------------------------------------------------------------- Time 20.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCGCC MEME-4 width = 8 sites = 5 llr = 60 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C ::::8:a8 probability G a2aa28:2 matrix T :8:::::: bits 2.7 * ** * 2.4 * ** * 2.1 * ** * 1.9 * *** ** Relative 1.6 * ****** Entropy 1.3 * ****** (17.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCGCC consensus G GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16761623-16761743 54 8.53e-07 TTCAAAACTT GTGGCGCC CACGGGTGGG chr2L:1362357-1362477 47 8.53e-07 GATTCCGTTT GTGGCGCC ATCTCTTCGC chr3R:23148532-23148652 67 2.97e-06 CATGATGATG GTGGCGCG GGTCGGAGGC chr3R:30280441-30280561 7 3.77e-06 CGACAA GGGGGGCC TTAATATTTC chr3R:31505507-31505627 98 5.59e-06 CTTCCTCACT GTGGCACC TTGGCACACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16761623-16761743 8.5e-07 53_[+4]_59 chr2L:1362357-1362477 8.5e-07 46_[+4]_66 chr3R:23148532-23148652 3e-06 66_[+4]_46 chr3R:30280441-30280561 3.8e-06 6_[+4]_106 chr3R:31505507-31505627 5.6e-06 97_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCGCC width=8 seqs=5 chrX:16761623-16761743 ( 54) GTGGCGCC 1 chr2L:1362357-1362477 ( 47) GTGGCGCC 1 chr3R:23148532-23148652 ( 67) GTGGCGCG 1 chr3R:30280441-30280561 ( 7) GGGGGGCC 1 chr3R:31505507-31505627 ( 98) GTGGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.0e+004 -897 -897 265 -897 -897 -897 33 121 -897 -897 265 -897 -897 -897 265 -897 -897 234 33 -897 -76 -897 233 -897 -897 266 -897 -897 -897 234 33 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-4 regular expression -------------------------------------------------------------------------------- G[TG]GG[CG][GA]C[CG] -------------------------------------------------------------------------------- Time 27.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CCRSCCAC MEME-5 width = 8 sites = 2 llr = 24 E-value = 5.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5:::a: pos.-specific C aa:5aa:a probability G ::55:::: matrix T :::::::: bits 2.7 ** ** * 2.4 ** ** * 2.1 ** ** * 1.9 ** ** * Relative 1.6 ** ***** Entropy 1.3 ** ***** (17.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCACCCAC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7574462-7574582 41 1.62e-06 ATATCTAAGT CCGGCCAC CAGGTCTCTA chr2L:1362357-1362477 6 5.09e-06 AGCAT CCACCCAC AGGAGAGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7574462-7574582 1.6e-06 40_[+5]_72 chr2L:1362357-1362477 5.1e-06 5_[+5]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCRSCCAC width=8 seqs=2 chr2L:7574462-7574582 ( 41) CCGGCCAC 1 chr2L:1362357-1362477 ( 6) CCACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.7e+004 -765 266 -765 -765 -765 266 -765 -765 56 -765 165 -765 -765 166 165 -765 -765 266 -765 -765 -765 266 -765 -765 156 -765 -765 -765 -765 266 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRSCCAC MEME-5 regular expression -------------------------------------------------------------------------------- CC[AG][CG]CCAC -------------------------------------------------------------------------------- Time 33.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10772062-10772182 1.15e-02 23_[+2(8.03e-06)]_89 chr2R:18610432-18610552 9.18e-01 120 chr3R:9913558-9913678 1.02e-01 120 chr3L:10359533-10359653 4.44e-01 120 chr3R:16985693-16985813 1.81e-04 97_[+3(1.58e-06)]_15 chrX:5608646-5608766 1.99e-01 120 chr2R:16685720-16685840 4.90e-02 28_[+1(5.02e-05)]_84 chr3R:13793455-13793575 9.75e-01 120 chr3R:26192400-26192520 8.51e-02 6_[+2(9.32e-05)]_106 chr2R:20136846-20136966 8.86e-02 79_[+1(2.18e-05)]_33 chr2R:10237818-10237938 1.30e-01 120 chr2L:9438378-9438498 3.59e-01 120 chr3R:31308964-31309084 5.31e-01 120 chr3R:27593357-27593477 3.31e-02 120 chr3R:4961580-4961700 3.98e-02 120 chrX:5026174-5026294 5.65e-01 120 chrX:9251412-9251532 2.28e-04 17_[+2(1.82e-06)]_95 chr3R:31505307-31505427 3.82e-01 120 chr3R:8029764-8029884 9.45e-01 120 chr2L:7992091-7992211 3.83e-01 120 chr3L:5637621-5637741 8.91e-01 120 chr3L:18276044-18276164 9.06e-01 120 chr3R:8116069-8116189 9.53e-01 120 chrX:17545684-17545804 9.35e-01 120 chr3R:27140064-27140184 1.72e-01 120 chrX:6022253-6022373 7.15e-01 120 chr3R:23148532-23148652 3.18e-04 66_[+4(2.97e-06)]_46 chr3L:21099195-21099315 7.55e-01 120 chrX:8255056-8255176 2.24e-01 78_[+1(7.48e-05)]_34 chr3R:30843885-30844005 1.20e-02 96_[+1(7.48e-05)]_16 chr3R:8968948-8969068 5.90e-02 120 chr3L:3246890-3247010 9.43e-01 120 chrX:5025452-5025572 8.60e-01 120 chrX:6030156-6030276 1.37e-02 26_[+4(5.24e-05)]_86 chr2L:11222225-11222345 1.00e+00 120 chr3R:29778275-29778395 7.44e-01 120 chr2L:7973959-7974079 9.61e-01 120 chr2R:21569764-21569884 9.57e-01 120 chrX:22479462-22479582 8.45e-01 120 chrX:13541331-13541451 1.06e-02 120 chr2L:11220907-11221027 9.69e-01 120 chr2R:17613850-17613970 9.87e-03 120 chrX:1320561-1320681 6.18e-01 120 chrX:12507717-12507837 9.49e-01 120 chr3R:23191593-23191713 9.96e-01 120 chr2L:3554065-3554185 5.79e-01 120 chr3L:785872-785992 9.84e-01 120 chr2L:700965-701085 7.73e-01 120 chr3R:30689866-30689986 1.01e-04 84_[+3(4.94e-06)]_28 chr2L:10791434-10791554 1.00e+00 120 chr3L:6471969-6472089 2.42e-01 120 chrX:2452895-2453015 3.11e-02 65_[+1(5.02e-05)]_47 chr2L:650984-651104 3.93e-01 120 chr3R:31688857-31688977 3.03e-01 120 chrX:9892997-9893117 9.07e-01 120 chr2L:11871041-11871161 9.89e-01 120 chr3R:22628046-22628166 5.66e-01 120 chr3L:727339-727459 3.94e-01 120 chr3L:6771333-6771453 5.40e-01 120 chr3L:3612756-3612876 3.55e-01 120 chr2L:9736132-9736252 6.60e-01 120 chr3R:10579695-10579815 3.34e-02 11_[+5(7.48e-05)]_101 chr3R:21935316-21935436 7.73e-01 120 chrX:9317261-9317381 2.73e-04 69_[+2(1.82e-06)]_43 chr2R:6969514-6969634 9.82e-01 120 chr3L:5630277-5630397 9.87e-01 120 chrX:14750549-14750669 1.00e+00 120 chrX:19164894-19165014 4.97e-01 120 chrX:3381139-3381259 4.03e-01 120 chr2R:23014876-23014996 5.52e-01 120 chrX:17490008-17490128 9.04e-01 120 chrX:13936329-13936449 5.29e-02 112_[+5(7.48e-05)] chr3L:761846-761966 1.02e-01 120 chr3R:8142245-8142365 9.98e-01 120 chrX:15552567-15552687 6.48e-01 120 chr2R:14467069-14467189 9.44e-01 120 chrX:17760677-17760797 7.70e-03 1_[+1(2.59e-05)]_111 chr3R:10530685-10530805 5.71e-01 120 chr3L:1457421-1457541 7.35e-01 120 chr3R:25461811-25461931 9.47e-01 120 chr3L:6446730-6446850 9.89e-01 120 chr3L:14453331-14453451 8.97e-01 120 chr3R:29762472-29762592 6.15e-01 120 chr2L:15281086-15281206 9.55e-01 120 chr3R:31505507-31505627 4.38e-04 97_[+4(5.59e-06)]_15 chr3R:8272719-8272839 8.30e-01 120 chrX:3060208-3060328 7.13e-02 120 chr2L:17782059-17782179 1.00e+00 120 chr3R:4883988-4884108 9.77e-01 120 chr2R:19849228-19849348 6.79e-01 120 chr2R:10600486-10600606 7.83e-02 120 chr3L:17502337-17502457 9.99e-01 120 chrX:2788689-2788809 4.70e-01 120 chr3R:27171284-27171404 9.81e-01 120 chrX:12015128-12015248 2.48e-04 4_[+2(5.35e-05)]_108 chr3R:11888400-11888520 4.77e-01 120 chr2L:7574462-7574582 5.85e-06 40_[+5(1.62e-06)]_41_[+3(4.17e-06)]_\ 23 chr3R:28633903-28634023 1.00e+00 120 chr3L:388259-388379 7.70e-01 120 chr3L:1829654-1829774 4.55e-01 120 chr2R:19969866-19969986 3.87e-01 120 chrX:17814965-17815085 6.05e-01 120 chr3R:30076219-30076339 1.94e-01 120 chr2L:3341748-3341868 5.53e-02 120 chr3R:31956422-31956542 8.99e-02 120 chr3R:31225144-31225264 1.15e-01 120 chrX:17571037-17571157 7.71e-01 120 chrX:13568324-13568444 5.14e-01 120 chrX:21073794-21073914 1.69e-01 3_[+1(3.79e-05)]_109 chr2R:11515864-11515984 9.96e-01 120 chr3L:728017-728137 7.18e-01 120 chr3L:14055415-14055535 7.17e-01 120 chrX:8667872-8667992 1.27e-03 18_[+2(2.65e-06)]_94 chr3L:11297712-11297832 1.00e+00 120 chrX:5044558-5044678 3.88e-01 120 chrX:7892607-7892727 9.18e-01 120 chr3R:23486885-23487005 9.40e-01 120 chr2L:7376296-7376416 9.96e-01 120 chrX:19162381-19162501 3.49e-01 120 chr3L:11322618-11322738 3.15e-01 120 chr3R:30501268-30501388 4.43e-01 120 chr3R:11614650-11614770 2.08e-02 51_[+3(4.17e-06)]_61 chr2R:15513545-15513665 4.14e-02 120 chr3L:18241051-18241171 9.30e-02 107_[+1(8.79e-06)]_5 chrX:20509621-20509741 6.05e-01 120 chr2R:16156411-16156531 4.21e-01 120 chr3R:13934729-13934849 9.86e-01 120 chrX:12760835-12760955 8.71e-01 120 chrX:17229874-17229994 9.69e-01 120 chr2L:675056-675176 6.12e-01 120 chrX:2365551-2365671 9.83e-01 120 chr2R:6556902-6557022 5.01e-01 120 chrX:3411942-3412062 8.28e-01 120 chr2R:19171759-19171879 1.45e-01 120 chr3R:9934991-9935111 8.08e-02 98_[+2(9.88e-06)]_14 chrX:16102459-16102579 5.12e-02 120 chr2L:1362357-1362477 9.68e-08 5_[+5(5.09e-06)]_33_[+4(8.53e-07)]_\ 66 chr2L:9448823-9448943 9.64e-01 120 chr2R:8650544-8650664 1.97e-01 120 chr3R:31680032-31680152 8.31e-03 6_[+1(3.79e-05)]_106 chr2L:18466309-18466429 4.39e-01 120 chr2L:11968709-11968829 5.42e-01 120 chr3L:17608652-17608772 8.64e-01 120 chr3R:30281407-30281527 6.22e-01 120 chr3R:30280441-30280561 1.64e-03 6_[+4(3.77e-06)]_106 chr3L:660470-660590 5.89e-01 120 chr2R:12741714-12741834 2.58e-02 120 chr3R:21648608-21648728 8.05e-01 120 chr3L:16024796-16024916 5.92e-02 120 chr3R:21887610-21887730 9.93e-03 120 chr2L:7419523-7419643 1.59e-01 120 chr3R:11947228-11947348 4.02e-02 91_[+5(7.48e-05)]_21 chr3L:13021848-13021968 6.75e-01 120 chrX:16761623-16761743 1.46e-05 53_[+4(8.53e-07)]_59 chr3L:10794020-10794140 4.12e-01 120 chr3R:13941530-13941650 3.38e-01 120 chrX:2648085-2648205 2.86e-04 50_[+4(2.72e-05)]_62 chr2L:423303-423423 8.99e-01 120 chrX:18834509-18834629 6.55e-01 120 chr3R:15596056-15596176 6.92e-01 120 chr3L:6359335-6359455 6.93e-01 120 chr2R:18305361-18305481 6.96e-01 120 chr2L:19162885-19163005 4.70e-03 110_[+3(8.18e-07)]_2 chr2L:15743727-15743847 9.91e-02 100_[+1(1.77e-05)]_12 chrX:3289473-3289593 1.09e-01 120 chr3R:30811349-30811469 8.78e-01 120 chr3L:1374599-1374719 6.89e-01 120 chr3L:758719-758839 7.36e-02 111_[+1(7.48e-05)]_1 chrX:6059294-6059414 2.42e-01 120 chr2R:8195133-8195253 6.57e-01 120 chr2L:9829032-9829152 3.32e-02 120 chr2L:11306237-11306357 4.90e-01 120 chr3R:27186322-27186442 9.21e-03 120 chr3R:25634018-25634138 5.16e-02 106_[+1(8.79e-06)]_6 chr3R:14755205-14755325 8.88e-01 120 chr3R:5100458-5100578 6.64e-01 120 chrX:10104623-10104743 8.90e-01 120 chr3L:3343432-3343552 8.25e-01 120 chr2L:11066141-11066261 1.96e-01 120 chr2R:16812240-16812360 7.33e-01 120 chr3R:22194888-22195008 9.95e-01 120 chr3L:20403703-20403823 9.47e-03 29_[+1(8.79e-06)]_83 chr3L:11414589-11414709 5.71e-05 8_[+1(1.77e-05)]_34_[+2(8.03e-06)]_\ 62 chr3L:3513198-3513318 2.33e-01 84_[+1(1.77e-05)]_28 chr3L:5863072-5863192 6.43e-01 120 chr3R:22195855-22195975 1.02e-01 120 chr3L:8913655-8913775 2.07e-01 120 chr2L:8950354-8950474 2.42e-01 78_[+1(7.48e-05)]_34 chrX:7526232-7526352 5.77e-01 120 chr2L:18628272-18628392 9.83e-01 120 chr3L:1031072-1031192 9.39e-02 120 chr3R:4667515-4667635 2.31e-01 120 chr3L:16974795-16974915 2.44e-01 120 chr3L:15762983-15763103 2.60e-01 120 chr2R:20206687-20206807 4.95e-01 120 chr3R:13861937-13862057 1.00e+00 120 chr3R:18990574-18990694 8.99e-01 120 chrX:13312288-13312408 8.93e-01 120 chrX:5786647-5786767 4.82e-01 120 chr2L:5493076-5493196 1.97e-01 120 chr3R:31682257-31682377 3.32e-01 120 chr2R:14968002-14968122 3.13e-01 120 chr2L:5249908-5250028 1.39e-02 96_[+1(3.79e-05)]_16 chrX:17510242-17510362 7.13e-01 120 chr3R:14498243-14498363 3.32e-01 120 chrX:21074459-21074579 6.98e-01 120 chr3L:664020-664140 5.32e-01 120 chr2R:17458928-17459048 2.06e-01 120 chr2R:9497098-9497218 4.79e-01 120 chr3R:22175802-22175922 2.24e-01 120 chr2L:18648337-18648457 3.32e-02 120 chr2R:14513660-14513780 6.18e-01 120 chr3R:14430411-14430531 3.34e-01 120 chr2R:17851609-17851729 7.01e-02 120 chr3L:18065171-18065291 7.46e-01 120 chr2L:2931891-2932011 4.91e-01 120 chr3L:1388232-1388352 3.88e-02 120 chr3R:4873868-4873988 1.60e-01 120 chr2R:9064686-9064806 3.57e-01 120 chr3L:19046553-19046673 9.95e-01 120 chr2R:9674783-9674903 2.58e-01 120 chr3R:29096112-29096232 9.15e-01 120 chr3L:7792346-7792466 9.00e-02 120 chr2L:10616089-10616209 2.66e-01 120 chr2R:21569039-21569159 9.27e-01 120 chr2L:5501467-5501587 1.50e-01 120 chr2L:9493424-9493544 9.32e-01 120 chr3L:14253666-14253786 3.71e-03 82_[+1(8.79e-06)]_30 chr3L:9742386-9742506 4.66e-01 120 chr3R:6397812-6397932 7.00e-03 21_[+1(8.79e-06)]_91 chrX:5923259-5923379 9.18e-01 120 chr3R:6950255-6950375 8.88e-01 120 chrX:13137191-13137311 1.47e-01 120 chr2L:19397762-19397882 6.35e-01 120 chr2R:23299488-23299608 1.61e-01 120 chr3R:15899786-15899906 9.48e-01 120 chr2L:3781599-3781719 1.00e+00 120 chr3R:30284680-30284800 9.36e-01 120 chr2R:12532739-12532859 9.21e-01 120 chr3R:30134809-30134929 4.27e-02 89_[+3(9.07e-05)]_23 chr2R:24548108-24548228 1.46e-02 12_[+3(9.07e-05)]_100 chr2R:21039402-21039522 9.97e-01 120 chrX:3681035-3681155 1.60e-01 46_[+1(1.77e-05)]_66 chr3R:5060403-5060523 8.14e-01 120 chr2L:18645604-18645724 9.65e-01 120 chr2L:6165878-6165998 8.41e-01 120 chr3L:16408628-16408748 1.01e-05 92_[+1(3.79e-05)]_9_[+2(4.43e-06)]_\ 3 chr2R:23385707-23385827 1.79e-01 120 chr2R:25031977-25032097 9.04e-01 120 chrX:7945535-7945655 6.98e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n03.farnam.hpc.yale.internal ********************************************************************************