******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/luna.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:15657986-15658106 1.0000 120 chr2R:9273471-9273591 1.0000 120 chr3L:20097402-20097522 1.0000 120 chr3L:15689574-15689694 1.0000 120 chr2R:18774928-18775048 1.0000 120 chr2L:20840594-20840714 1.0000 120 chr3L:21205117-21205237 1.0000 120 chr2R:22066777-22066897 1.0000 120 chr3L:10866738-10866858 1.0000 120 chr3R:14569663-14569783 1.0000 120 chr2L:2873432-2873552 1.0000 120 chrX:13394482-13394602 1.0000 120 chr3L:11258531-11258651 1.0000 120 chr3R:30489937-30490057 1.0000 120 chr3R:10407323-10407443 1.0000 120 chr2R:14488703-14488823 1.0000 120 chr3R:23157870-23157990 1.0000 120 chr3R:9875771-9875891 1.0000 120 chr3R:15178371-15178491 1.0000 120 chr3R:29895203-29895323 1.0000 120 chr3L:19939279-19939399 1.0000 120 chr2L:2735061-2735181 1.0000 120 chr3L:7760107-7760227 1.0000 120 chr2L:4403163-4403283 1.0000 120 chr3R:26952374-26952494 1.0000 120 chr3L:4521918-4522038 1.0000 120 chr3R:29868682-29868802 1.0000 120 chr3L:3320175-3320295 1.0000 120 chr3R:12719786-12719906 1.0000 120 chr3R:9450729-9450849 1.0000 120 chr2L:18708021-18708141 1.0000 120 chr3L:7861188-7861308 1.0000 120 chr3L:2377493-2377613 1.0000 120 chr3R:9057070-9057190 1.0000 120 chr2R:17267209-17267329 1.0000 120 chrX:7703142-7703262 1.0000 120 chr2L:10298464-10298584 1.0000 120 chr2R:16344401-16344521 1.0000 120 chr3L:11721626-11721746 1.0000 120 chr3L:19294393-19294513 1.0000 120 chr3L:833345-833465 1.0000 120 chr2R:21160552-21160672 1.0000 120 chr3L:11580091-11580211 1.0000 120 chr3L:10362734-10362854 1.0000 120 chr2R:24571562-24571682 1.0000 120 chrX:16105803-16105923 1.0000 120 chr3L:7869011-7869131 1.0000 120 chr2R:23970053-23970173 1.0000 120 chrX:11391589-11391709 1.0000 120 chr3R:9701478-9701598 1.0000 120 chr2L:16817710-16817830 1.0000 120 chr2L:2220733-2220853 1.0000 120 chr3L:16713710-16713830 1.0000 120 chr3L:11253415-11253535 1.0000 120 chr2L:3058799-3058919 1.0000 120 chr2L:6050737-6050857 1.0000 120 chr3R:23763220-23763340 1.0000 120 chr3R:8811025-8811145 1.0000 120 chr3L:4446043-4446163 1.0000 120 chr2L:18320260-18320380 1.0000 120 chr3L:5819408-5819528 1.0000 120 chr3R:8980097-8980217 1.0000 120 chr3R:17040573-17040693 1.0000 120 chrX:10744573-10744693 1.0000 120 chr2R:21091939-21092059 1.0000 120 chr3R:12406322-12406442 1.0000 120 chr2L:1177609-1177729 1.0000 120 chr3L:10679939-10680059 1.0000 120 chrX:2073413-2073533 1.0000 120 chr3R:20558196-20558316 1.0000 120 chr2L:8437317-8437437 1.0000 120 chr2R:21634634-21634754 1.0000 120 chr2L:4224226-4224346 1.0000 120 chr2R:22641378-22641498 1.0000 120 chr2R:18811983-18812103 1.0000 120 chr2R:6494323-6494443 1.0000 120 chr3R:23028660-23028780 1.0000 120 chrX:17887199-17887319 1.0000 120 chr3L:3197597-3197717 1.0000 120 chr2L:7940830-7940950 1.0000 120 chr2R:22669318-22669438 1.0000 120 chr3R:17682551-17682671 1.0000 120 chr3L:17597117-17597237 1.0000 120 chr2R:14302757-14302877 1.0000 120 chr2R:4188070-4188190 1.0000 120 chr3L:20518192-20518312 1.0000 120 chr2L:16271612-16271732 1.0000 120 chr3L:14760062-14760182 1.0000 120 chr2L:8350652-8350772 1.0000 120 chr3R:10203666-10203786 1.0000 120 chr3R:8233412-8233532 1.0000 120 chrX:13329723-13329843 1.0000 120 chr2R:9544765-9544885 1.0000 120 chr2R:9285011-9285131 1.0000 120 chr3L:8689810-8689930 1.0000 120 chr2R:17161048-17161168 1.0000 120 chr3L:12803820-12803940 1.0000 120 chrX:18899881-18900001 1.0000 120 chrX:13334943-13335063 1.0000 120 chr3L:17791647-17791767 1.0000 120 chr2R:23702330-23702450 1.0000 120 chr2L:13082325-13082445 1.0000 120 chr3R:9220176-9220296 1.0000 120 chr3R:20829059-20829179 1.0000 120 chr3R:12369236-12369356 1.0000 120 chr2R:6881085-6881205 1.0000 120 chr2L:10437455-10437575 1.0000 120 chr3R:22023349-22023469 1.0000 120 chr2R:7071002-7071122 1.0000 120 chr3R:26121360-26121480 1.0000 120 chrX:5286008-5286128 1.0000 120 chr2L:7412301-7412421 1.0000 120 chr3R:14361724-14361844 1.0000 120 chr2R:13999223-13999343 1.0000 120 chr3L:17659314-17659434 1.0000 120 chr3L:19092530-19092650 1.0000 120 chr2L:10221292-10221412 1.0000 120 chr2R:21295537-21295657 1.0000 120 chr3R:10882216-10882336 1.0000 120 chrX:12466750-12466870 1.0000 120 chr2L:20881543-20881663 1.0000 120 chr3R:10696536-10696656 1.0000 120 chr2L:18136705-18136825 1.0000 120 chr3R:9047722-9047842 1.0000 120 chrX:1370122-1370242 1.0000 120 chr2R:11185732-11185852 1.0000 120 chr3L:18114461-18114581 1.0000 120 chr3R:18918924-18919044 1.0000 120 chr2R:10096794-10096914 1.0000 120 chr3L:3896767-3896887 1.0000 120 chr2R:13586467-13586587 1.0000 120 chr3L:15921355-15921475 1.0000 120 chr2L:19508715-19508835 1.0000 120 chr3R:24625552-24625672 1.0000 120 chr3L:7978928-7979048 1.0000 120 chr3L:11049568-11049688 1.0000 120 chr2R:17748509-17748629 1.0000 120 chr3R:9055171-9055291 1.0000 120 chr2R:13995645-13995765 1.0000 120 chr3L:8584182-8584302 1.0000 120 chrX:16441464-16441584 1.0000 120 chr3R:5600342-5600462 1.0000 120 chrX:15582911-15583031 1.0000 120 chr2L:14094826-14094946 1.0000 120 chr3R:21161804-21161924 1.0000 120 chr3R:27130134-27130254 1.0000 120 chr3L:19933027-19933147 1.0000 120 chr2L:17470767-17470887 1.0000 120 chr2R:7012204-7012324 1.0000 120 chr3L:872695-872815 1.0000 120 chr3R:4220890-4221010 1.0000 120 chrX:16286213-16286333 1.0000 120 chrX:19208184-19208304 1.0000 120 chr3R:10168804-10168924 1.0000 120 chr2L:1108386-1108506 1.0000 120 chr2R:14362907-14363027 1.0000 120 chr3R:5758986-5759106 1.0000 120 chrX:3134520-3134640 1.0000 120 chr3R:21218973-21219093 1.0000 120 chr3R:20948101-20948221 1.0000 120 chr3R:22596647-22596767 1.0000 120 chr2R:7748185-7748305 1.0000 120 chr2L:7033431-7033551 1.0000 120 chrX:16650550-16650670 1.0000 120 chr2L:6338872-6338992 1.0000 120 chr2R:9092970-9093090 1.0000 120 chr2R:12605726-12605846 1.0000 120 chr2R:16170826-16170946 1.0000 120 chr2L:16317853-16317973 1.0000 120 chr3R:23334963-23335083 1.0000 120 chr2R:8080106-8080226 1.0000 120 chr3R:27131511-27131631 1.0000 120 chr3L:21640869-21640989 1.0000 120 chr3R:27245237-27245357 1.0000 120 chr3L:18625997-18626117 1.0000 120 chr3R:30058076-30058196 1.0000 120 chrX:13391248-13391368 1.0000 120 chr2R:24965028-24965148 1.0000 120 chr3L:5752212-5752332 1.0000 120 chrX:18370867-18370987 1.0000 120 chr3L:9127450-9127570 1.0000 120 chr2L:18567698-18567818 1.0000 120 chr3R:26654679-26654799 1.0000 120 chr4:867015-867135 1.0000 120 chr3L:14762356-14762476 1.0000 120 chr2L:7496213-7496333 1.0000 120 chr2R:7699130-7699250 1.0000 120 chrX:2146275-2146395 1.0000 120 chr3R:24944927-24945047 1.0000 120 chrX:4610553-4610673 1.0000 120 chr2L:2037534-2037654 1.0000 120 chr3L:13006637-13006757 1.0000 120 chr3L:7360454-7360574 1.0000 120 chr3L:18673112-18673232 1.0000 120 chr3R:25123358-25123478 1.0000 120 chr3R:26130675-26130795 1.0000 120 chr2R:14352122-14352242 1.0000 120 chr3R:26536807-26536927 1.0000 120 chr2L:21237255-21237375 1.0000 120 chr2R:16129429-16129549 1.0000 120 chr3L:4139026-4139146 1.0000 120 chr3R:15320109-15320229 1.0000 120 chr2L:4892094-4892214 1.0000 120 chr3L:7348087-7348207 1.0000 120 chr3R:14283167-14283287 1.0000 120 chr3L:6743151-6743271 1.0000 120 chr3L:11993131-11993251 1.0000 120 chr3R:20989811-20989931 1.0000 120 chr3R:20830458-20830578 1.0000 120 chrX:4554185-4554305 1.0000 120 chr3R:12718227-12718347 1.0000 120 chr3L:9442235-9442355 1.0000 120 chrX:5309099-5309219 1.0000 120 chr3L:15142410-15142530 1.0000 120 chr3R:15973713-15973833 1.0000 120 chrX:1171228-1171348 1.0000 120 chr3L:20785128-20785248 1.0000 120 chr3L:21841306-21841426 1.0000 120 chr2L:5009650-5009770 1.0000 120 chr3L:9128147-9128267 1.0000 120 chr3L:2265763-2265883 1.0000 120 chr4:486677-486797 1.0000 120 chr2R:16571755-16571875 1.0000 120 chrX:15844364-15844484 1.0000 120 chr2R:10853383-10853503 1.0000 120 chr2L:3872464-3872584 1.0000 120 chr3L:19337844-19337964 1.0000 120 chr2L:16487662-16487782 1.0000 120 chr2R:6085695-6085815 1.0000 120 chr3L:2466703-2466823 1.0000 120 chr2L:7641787-7641907 1.0000 120 chr2R:10142319-10142439 1.0000 120 chr2R:19184039-19184159 1.0000 120 chr3R:10675296-10675416 1.0000 120 chr2R:19290043-19290163 1.0000 120 chr2R:15848040-15848160 1.0000 120 chr3L:6816315-6816435 1.0000 120 chr2R:15114546-15114666 1.0000 120 chr2R:19178596-19178716 1.0000 120 chr3R:15408324-15408444 1.0000 120 chr3R:24586765-24586885 1.0000 120 chr2R:9440370-9440490 1.0000 120 chrX:7015143-7015263 1.0000 120 chr3R:26188860-26188980 1.0000 120 chr3L:23095419-23095539 1.0000 120 chrX:6803548-6803668 1.0000 120 chr2R:12633454-12633574 1.0000 120 chr2R:24565551-24565671 1.0000 120 chr3L:17653595-17653715 1.0000 120 chr2R:18971144-18971264 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_luna/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/luna.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.199 G 0.207 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.199 G 0.207 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 56 llr = 484 E-value = 1.9e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:7 pos.-specific C 2::a:::: probability G ::1:a::3 matrix T 6:9:::a: bits 2.3 ** 2.1 ** 1.9 ** 1.6 * **** Relative 1.4 * **** Entropy 1.2 ****** (12.5 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19178596-19178716 101 2.82e-05 CCAGCGCTGC TATCGATA GGCCCGCGGG chrX:15844364-15844484 81 2.82e-05 TTATGATTTT TATCGATA GATCGACTTA chr3L:4139026-4139146 8 2.82e-05 TAGTTGA TATCGATA TTACTGTCTA chr3L:7360454-7360574 66 2.82e-05 GCCTCCCGCC TATCGATA GCCGTGCAAT chr3L:5752212-5752332 42 2.82e-05 CGAATGTCAA TATCGATA TGCTAACCGA chrX:16286213-16286333 13 2.82e-05 GAGTGCGATA TATCGATA GGTGCAGTGT chr3R:4220890-4221010 15 2.82e-05 CAGCGTCAAA TATCGATA AGAGCACAGC chrX:16441464-16441584 65 2.82e-05 CCGCGAATAG TATCGATA AGGCGTCGCA chr3R:24625552-24625672 75 2.82e-05 AGCTAAATGT TATCGATA AGCATTTCAG chr2R:10096794-10096914 108 2.82e-05 TAAAGACCAG TATCGATA GCAAT chr2L:10221292-10221412 43 2.82e-05 CCGAATCCCT TATCGATA CCCGATACAC chr2R:14302757-14302877 38 2.82e-05 GGTTTTCTGC TATCGATA GGATAGTGCT chr2R:6494323-6494443 43 2.82e-05 TATTTGGCAC TATCGATA GTTTTTCAGC chr2R:22641378-22641498 100 2.82e-05 ATTTAAAGAC TATCGATA TTTTTCGTCC chr2L:1177609-1177729 74 2.82e-05 ATCGGTCAGT TATCGATA ACTGGCAGTC chr3R:17040573-17040693 95 2.82e-05 TTTGTCGATA TATCGATA GGCTGGCCAA chr2R:21160552-21160672 65 2.82e-05 AATTCGCTGA TATCGATA TTTTCACGCA chr3L:833345-833465 111 2.82e-05 TCGATTTTCC TATCGATA AT chr3R:23157870-23157990 36 2.82e-05 AGTCGATTGA TATCGATA ATTTTTGTCG chr3R:10407323-10407443 13 2.82e-05 TAGCATTAGT TATCGATA AGAACAAAAT chr2R:16571755-16571875 36 4.75e-05 TGTTCGATTT TATCGATG TTTCCAACCA chr2L:5009650-5009770 94 4.75e-05 CGGTCGATAC TATCGATG ACGCTCACAG chr3L:18673112-18673232 77 4.75e-05 CGTTCGATAG TATCGATG CCGCTTGGGC chr2R:8080106-8080226 76 4.75e-05 AATGCCACCT TATCGATG CTGGGCGCCA chr3R:21218973-21219093 110 4.75e-05 GATGTCAGTA TATCGATG TCT chr3L:7978928-7979048 66 4.75e-05 ACATCGGACC TATCGATG TTTCTATCGG chr2L:19508715-19508835 25 4.75e-05 TTGGAACTTA TATCGATG CTTACCCGAT chrX:13329723-13329843 13 4.75e-05 TGCTAAAAAA TATCGATG AGCAGCGTTA chrX:17887199-17887319 8 4.75e-05 GCGATGA TATCGATG TATCGGTGTA chr2R:12633454-12633574 108 6.68e-05 AACCGGCGCC CATCGATA TCGTA chrX:18370867-18370987 59 6.68e-05 CGATGTGTGA CATCGATA TCAAGCAAAA chr2R:14362907-14363027 80 6.68e-05 TTCAGCAAAG CATCGATA TCAACAAAAA chr3L:19092530-19092650 54 6.68e-05 TTAATCGATA CATCGATA GTTGGGTCCT chr3R:12406322-12406442 95 6.68e-05 ATTAAATTAT CATCGATA AAAAAGGACG chr2L:6050737-6050857 102 6.68e-05 CGCGAGCAGC CATCGATA CATGTTCCAG chr2L:4403163-4403283 60 6.68e-05 TGACAGCTGT CATCGATA TGTAATCGAT chrX:6803548-6803668 80 9.62e-05 ATTAGATCGC AATCGATA GCTCTGTCGA chr3R:15408324-15408444 44 9.62e-05 GCCCGGGAGC AATCGATA GGCAAACACC chr2R:14352122-14352242 44 9.62e-05 AATTCAAAAC AATCGATA AGTGCTCTGA chr3L:13006637-13006757 104 9.62e-05 GTCGGAAGGT AATCGATA GTTCTGATA chr3R:24944927-24945047 17 9.62e-05 CGCCATTTCT AATCGATA ACACTAGTAT chrX:19208184-19208304 9 9.62e-05 ACCAAACC AATCGATA TCGGCCAACA chr3L:19294393-19294513 33 9.62e-05 ACTCAACTCT AATCGATA AATCAGCATT chr2R:9273471-9273591 74 9.62e-05 AATGCTACAA AATCGATA ATACACGTAC chr3L:6743151-6743271 41 1.09e-04 ACACGCCAGC CATCGATG GTTCACTAGA chr2L:3872464-3872584 22 1.30e-04 TAAAAATGCT TAGCGATA GGTCTCAAGC chrX:1171228-1171348 82 1.30e-04 CGAAGTTTAC TAGCGATA AGATTGTCGA chr3R:25123358-25123478 85 1.50e-04 TGTTTCCTGC AATCGATG TTTCTACCTT chr2L:10437455-10437575 69 1.50e-04 GTGATAGTGC AATCGATG AATGTGCAGC chr3R:17682551-17682671 10 1.63e-04 TTGGACAAC TAGCGATG ACTCAAGCCG chr3L:3320175-3320295 54 1.77e-04 CATGTACAAT CAGCGATA AAAACGAAAA chr3L:11993131-11993251 91 1.98e-04 GATGATAGGG AAGCGATA CCTTACATAC chr2R:4188070-4188190 111 1.98e-04 ATGCAAATGT AAGCGATA AA chrX:13391248-13391368 24 2.07e-04 AGTTGGTACT CAGCGATG GTTAAATGGG chr3R:10882216-10882336 14 2.07e-04 TTTTAGCGAA CAGCGATG GCAACTATCG chr2R:23970053-23970173 31 2.51e-04 GAGTCTGAAC TATCGAAA GTAAACAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19178596-19178716 2.8e-05 100_[+1]_12 chrX:15844364-15844484 2.8e-05 80_[+1]_32 chr3L:4139026-4139146 2.8e-05 7_[+1]_105 chr3L:7360454-7360574 2.8e-05 65_[+1]_47 chr3L:5752212-5752332 2.8e-05 41_[+1]_71 chrX:16286213-16286333 2.8e-05 12_[+1]_100 chr3R:4220890-4221010 2.8e-05 14_[+1]_98 chrX:16441464-16441584 2.8e-05 64_[+1]_48 chr3R:24625552-24625672 2.8e-05 74_[+1]_38 chr2R:10096794-10096914 2.8e-05 107_[+1]_5 chr2L:10221292-10221412 2.8e-05 42_[+1]_70 chr2R:14302757-14302877 2.8e-05 37_[+1]_75 chr2R:6494323-6494443 2.8e-05 42_[+1]_70 chr2R:22641378-22641498 2.8e-05 99_[+1]_13 chr2L:1177609-1177729 2.8e-05 73_[+1]_39 chr3R:17040573-17040693 2.8e-05 94_[+1]_18 chr2R:21160552-21160672 2.8e-05 64_[+1]_48 chr3L:833345-833465 2.8e-05 110_[+1]_2 chr3R:23157870-23157990 2.8e-05 35_[+1]_77 chr3R:10407323-10407443 2.8e-05 12_[+1]_100 chr2R:16571755-16571875 4.8e-05 35_[+1]_77 chr2L:5009650-5009770 4.8e-05 93_[+1]_19 chr3L:18673112-18673232 4.8e-05 76_[+1]_36 chr2R:8080106-8080226 4.8e-05 75_[+1]_37 chr3R:21218973-21219093 4.8e-05 109_[+1]_3 chr3L:7978928-7979048 4.8e-05 65_[+1]_47 chr2L:19508715-19508835 4.8e-05 24_[+1]_88 chrX:13329723-13329843 4.8e-05 12_[+1]_100 chrX:17887199-17887319 4.8e-05 7_[+1]_105 chr2R:12633454-12633574 6.7e-05 107_[+1]_5 chrX:18370867-18370987 6.7e-05 58_[+1]_54 chr2R:14362907-14363027 6.7e-05 79_[+1]_33 chr3L:19092530-19092650 6.7e-05 53_[+1]_59 chr3R:12406322-12406442 6.7e-05 94_[+1]_18 chr2L:6050737-6050857 6.7e-05 101_[+1]_11 chr2L:4403163-4403283 6.7e-05 59_[+1]_53 chrX:6803548-6803668 9.6e-05 79_[+1]_33 chr3R:15408324-15408444 9.6e-05 43_[+1]_69 chr2R:14352122-14352242 9.6e-05 43_[+1]_69 chr3L:13006637-13006757 9.6e-05 103_[+1]_9 chr3R:24944927-24945047 9.6e-05 16_[+1]_96 chrX:19208184-19208304 9.6e-05 8_[+1]_104 chr3L:19294393-19294513 9.6e-05 32_[+1]_80 chr2R:9273471-9273591 9.6e-05 73_[+1]_39 chr3L:6743151-6743271 0.00011 40_[+1]_72 chr2L:3872464-3872584 0.00013 21_[+1]_91 chrX:1171228-1171348 0.00013 81_[+1]_31 chr3R:25123358-25123478 0.00015 84_[+1]_28 chr2L:10437455-10437575 0.00015 68_[+1]_44 chr3R:17682551-17682671 0.00016 9_[+1]_103 chr3L:3320175-3320295 0.00018 53_[+1]_59 chr3L:11993131-11993251 0.0002 90_[+1]_22 chr2R:4188070-4188190 0.0002 110_[+1]_2 chrX:13391248-13391368 0.00021 23_[+1]_89 chr3R:10882216-10882336 0.00021 13_[+1]_99 chr2R:23970053-23970173 0.00025 30_[+1]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=56 chr2R:19178596-19178716 ( 101) TATCGATA 1 chrX:15844364-15844484 ( 81) TATCGATA 1 chr3L:4139026-4139146 ( 8) TATCGATA 1 chr3L:7360454-7360574 ( 66) TATCGATA 1 chr3L:5752212-5752332 ( 42) TATCGATA 1 chrX:16286213-16286333 ( 13) TATCGATA 1 chr3R:4220890-4221010 ( 15) TATCGATA 1 chrX:16441464-16441584 ( 65) TATCGATA 1 chr3R:24625552-24625672 ( 75) TATCGATA 1 chr2R:10096794-10096914 ( 108) TATCGATA 1 chr2L:10221292-10221412 ( 43) TATCGATA 1 chr2R:14302757-14302877 ( 38) TATCGATA 1 chr2R:6494323-6494443 ( 43) TATCGATA 1 chr2R:22641378-22641498 ( 100) TATCGATA 1 chr2L:1177609-1177729 ( 74) TATCGATA 1 chr3R:17040573-17040693 ( 95) TATCGATA 1 chr2R:21160552-21160672 ( 65) TATCGATA 1 chr3L:833345-833465 ( 111) TATCGATA 1 chr3R:23157870-23157990 ( 36) TATCGATA 1 chr3R:10407323-10407443 ( 13) TATCGATA 1 chr2R:16571755-16571875 ( 36) TATCGATG 1 chr2L:5009650-5009770 ( 94) TATCGATG 1 chr3L:18673112-18673232 ( 77) TATCGATG 1 chr2R:8080106-8080226 ( 76) TATCGATG 1 chr3R:21218973-21219093 ( 110) TATCGATG 1 chr3L:7978928-7979048 ( 66) TATCGATG 1 chr2L:19508715-19508835 ( 25) TATCGATG 1 chrX:13329723-13329843 ( 13) TATCGATG 1 chrX:17887199-17887319 ( 8) TATCGATG 1 chr2R:12633454-12633574 ( 108) CATCGATA 1 chrX:18370867-18370987 ( 59) CATCGATA 1 chr2R:14362907-14363027 ( 80) CATCGATA 1 chr3L:19092530-19092650 ( 54) CATCGATA 1 chr3R:12406322-12406442 ( 95) CATCGATA 1 chr2L:6050737-6050857 ( 102) CATCGATA 1 chr2L:4403163-4403283 ( 60) CATCGATA 1 chrX:6803548-6803668 ( 80) AATCGATA 1 chr3R:15408324-15408444 ( 44) AATCGATA 1 chr2R:14352122-14352242 ( 44) AATCGATA 1 chr3L:13006637-13006757 ( 104) AATCGATA 1 chr3R:24944927-24945047 ( 17) AATCGATA 1 chrX:19208184-19208304 ( 9) AATCGATA 1 chr3L:19294393-19294513 ( 33) AATCGATA 1 chr2R:9273471-9273591 ( 74) AATCGATA 1 chr3L:6743151-6743271 ( 41) CATCGATG 1 chr2L:3872464-3872584 ( 22) TAGCGATA 1 chrX:1171228-1171348 ( 82) TAGCGATA 1 chr3R:25123358-25123478 ( 85) AATCGATG 1 chr2L:10437455-10437575 ( 69) AATCGATG 1 chr3R:17682551-17682671 ( 10) TAGCGATG 1 chr3L:3320175-3320295 ( 54) CAGCGATA 1 chr3L:11993131-11993251 ( 91) AAGCGATA 1 chr2R:4188070-4188190 ( 111) AAGCGATA 1 chrX:13391248-13391368 ( 24) CAGCGATG 1 chr3R:10882216-10882336 ( 14) CAGCGATG 1 chr2R:23970053-23970173 ( 31) TATCGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.58245 E= 1.9e-020 -50 -2 -1245 102 172 -1245 -1245 -1245 -1245 -1245 -53 156 -1245 233 -1245 -1245 -1245 -1245 227 -1245 172 -1245 -1245 -1245 -408 -1245 -1245 175 127 -1245 37 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.9e-020 0.214286 0.196429 0.000000 0.589286 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.017857 0.000000 0.000000 0.982143 0.732143 0.000000 0.267857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AG] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF AACTATCG MEME-2 width = 8 sites = 20 llr = 194 E-value = 3.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 89::a::: pos.-specific C 1:a:::a: probability G :2::1::a matrix T 1::a:a:: bits 2.3 * ** 2.1 * ** 1.9 ** *** 1.6 ** *** Relative 1.4 ****** Entropy 1.2 ******* (14.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACTATCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16487662-16487782 101 1.93e-05 CATAGCAACC AACTATCG TCAGTAAGAA chr3L:21841306-21841426 49 1.93e-05 AACGGCCGGG AACTATCG GCAGACCGAT chr3R:25123358-25123478 24 1.93e-05 TTGAACCGGC AACTATCG ATTGTCGAAA chr3R:24944927-24945047 65 1.93e-05 AGGGCTGGCT AACTATCG CAAGCGAAAG chr2R:24965028-24965148 113 1.93e-05 GCTCCGATAG AACTATCG chr3R:5758986-5759106 16 1.93e-05 AGGCTTGTCA AACTATCG TTTGGATTAG chrX:16441464-16441584 38 1.93e-05 CATCCCATTC AACTATCG ATAGTCAGAC chr3R:10696536-10696656 107 1.93e-05 AGTATCGAAT AACTATCG ACTGCT chr3R:10882216-10882336 24 1.93e-05 CAGCGATGGC AACTATCG GCTATCGTGG chr2L:10221292-10221412 93 1.93e-05 TGCCATAACT AACTATCG GGCATTTCTA chr2R:6494323-6494443 2 1.93e-05 A AACTATCG ATGTTTTCTT chr3R:10407323-10407443 46 1.93e-05 ATCGTAATTG AACTATCG ATAGATAGAG chrX:16286213-16286333 105 3.25e-05 GGGGTGCGAT AGCTATCG AGAGACCC chr3R:4220890-4221010 69 3.25e-05 TGCGCGATCA AGCTATCG GAGCAAACTG chr2L:1177609-1177729 60 3.25e-05 GTAGCCCTGG AGCTATCG GTCAGTTATC chr3L:2265763-2265883 68 4.52e-05 TTCGAGGTGA CACTATCG ACATGAGTGC chr2L:18320260-18320380 12 4.52e-05 GGCCATTGAG CACTATCG CTGCCACTGG chr2L:19508715-19508835 42 6.37e-05 GCTTACCCGA TACTATCG CCAGCAGTCG chr2R:22641378-22641498 80 6.37e-05 GATGATTCGA TACTATCG ATATTTAAAG chr3L:18625997-18626117 46 7.69e-05 ACGCGAGAAG AACTGTCG GCATTTGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16487662-16487782 1.9e-05 100_[+2]_12 chr3L:21841306-21841426 1.9e-05 48_[+2]_64 chr3R:25123358-25123478 1.9e-05 23_[+2]_89 chr3R:24944927-24945047 1.9e-05 64_[+2]_48 chr2R:24965028-24965148 1.9e-05 112_[+2] chr3R:5758986-5759106 1.9e-05 15_[+2]_97 chrX:16441464-16441584 1.9e-05 37_[+2]_75 chr3R:10696536-10696656 1.9e-05 106_[+2]_6 chr3R:10882216-10882336 1.9e-05 23_[+2]_89 chr2L:10221292-10221412 1.9e-05 92_[+2]_20 chr2R:6494323-6494443 1.9e-05 1_[+2]_111 chr3R:10407323-10407443 1.9e-05 45_[+2]_67 chrX:16286213-16286333 3.3e-05 104_[+2]_8 chr3R:4220890-4221010 3.3e-05 68_[+2]_44 chr2L:1177609-1177729 3.3e-05 59_[+2]_53 chr3L:2265763-2265883 4.5e-05 67_[+2]_45 chr2L:18320260-18320380 4.5e-05 11_[+2]_101 chr2L:19508715-19508835 6.4e-05 41_[+2]_71 chr2R:22641378-22641498 6.4e-05 79_[+2]_33 chr3L:18625997-18626117 7.7e-05 45_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACTATCG width=8 seqs=20 chr2L:16487662-16487782 ( 101) AACTATCG 1 chr3L:21841306-21841426 ( 49) AACTATCG 1 chr3R:25123358-25123478 ( 24) AACTATCG 1 chr3R:24944927-24945047 ( 65) AACTATCG 1 chr2R:24965028-24965148 ( 113) AACTATCG 1 chr3R:5758986-5759106 ( 16) AACTATCG 1 chrX:16441464-16441584 ( 38) AACTATCG 1 chr3R:10696536-10696656 ( 107) AACTATCG 1 chr3R:10882216-10882336 ( 24) AACTATCG 1 chr2L:10221292-10221412 ( 93) AACTATCG 1 chr2R:6494323-6494443 ( 2) AACTATCG 1 chr3R:10407323-10407443 ( 46) AACTATCG 1 chrX:16286213-16286333 ( 105) AGCTATCG 1 chr3R:4220890-4221010 ( 69) AGCTATCG 1 chr2L:1177609-1177729 ( 60) AGCTATCG 1 chr3L:2265763-2265883 ( 68) CACTATCG 1 chr2L:18320260-18320380 ( 12) CACTATCG 1 chr2L:19508715-19508835 ( 42) TACTATCG 1 chr2R:22641378-22641498 ( 80) TACTATCG 1 chr3L:18625997-18626117 ( 46) AACTGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 3.8e+000 140 -100 -1097 -154 149 -1097 -46 -1097 -1097 233 -1097 -1097 -1097 -1097 -1097 178 165 -1097 -205 -1097 -1097 -1097 -1097 178 -1097 233 -1097 -1097 -1097 -1097 227 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.8e+000 0.800000 0.100000 0.000000 0.100000 0.850000 0.000000 0.150000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.950000 0.000000 0.050000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTATCG MEME-2 regular expression -------------------------------------------------------------------------------- AACTATCG -------------------------------------------------------------------------------- Time 13.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGKGCTG MEME-3 width = 8 sites = 12 llr = 130 E-value = 1.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::2:a:: probability G ::a5a::a matrix T :::3::a: bits 2.3 * * ** * 2.1 * * ** * 1.9 * * **** 1.6 *** **** Relative 1.4 *** **** Entropy 1.2 *** **** (15.6 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGGGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9442235-9442355 41 6.41e-06 CAAAATTGGC CAGGGCTG CAAGCGCTGT chr3R:24944927-24945047 54 6.41e-06 ATCGTTCTGG CAGGGCTG GCTAACTATC chr2R:24965028-24965148 90 6.41e-06 CGGGCCGAGT CAGGGCTG CGGAGGCTCC chr2L:7033431-7033551 92 6.41e-06 AAATATTTGG CAGGGCTG CAATAGCAAC chr2L:1108386-1108506 19 6.41e-06 ACTGCGATGC CAGGGCTG ACGAGAGGAA chr2R:21295537-21295657 97 6.41e-06 GTAACGCCAC CAGGGCTG CAGACACGCC chrX:6803548-6803668 14 1.54e-05 GACCGTCGCG CAGTGCTG CTAAAATGCT chr2R:16170826-16170946 15 1.54e-05 ATCTGCCTAA CAGTGCTG TAAAATGTGT chr2L:4224226-4224346 34 1.54e-05 GCTCCATTTT CAGTGCTG TAAATTGCCA chrX:2073413-2073533 42 1.54e-05 TACGTCTGGC CAGTGCTG CCGGACCAGT chr2R:19178596-19178716 92 2.16e-05 GCCGAACGAC CAGCGCTG CTATCGATAG chr2L:19508715-19508835 98 2.16e-05 TTACATTTAA CAGCGCTG TCGCTAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9442235-9442355 6.4e-06 40_[+3]_72 chr3R:24944927-24945047 6.4e-06 53_[+3]_59 chr2R:24965028-24965148 6.4e-06 89_[+3]_23 chr2L:7033431-7033551 6.4e-06 91_[+3]_21 chr2L:1108386-1108506 6.4e-06 18_[+3]_94 chr2R:21295537-21295657 6.4e-06 96_[+3]_16 chrX:6803548-6803668 1.5e-05 13_[+3]_99 chr2R:16170826-16170946 1.5e-05 14_[+3]_98 chr2L:4224226-4224346 1.5e-05 33_[+3]_79 chrX:2073413-2073533 1.5e-05 41_[+3]_71 chr2R:19178596-19178716 2.2e-05 91_[+3]_21 chr2L:19508715-19508835 2.2e-05 97_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGKGCTG width=8 seqs=12 chr3L:9442235-9442355 ( 41) CAGGGCTG 1 chr3R:24944927-24945047 ( 54) CAGGGCTG 1 chr2R:24965028-24965148 ( 90) CAGGGCTG 1 chr2L:7033431-7033551 ( 92) CAGGGCTG 1 chr2L:1108386-1108506 ( 19) CAGGGCTG 1 chr2R:21295537-21295657 ( 97) CAGGGCTG 1 chrX:6803548-6803668 ( 14) CAGTGCTG 1 chr2R:16170826-16170946 ( 15) CAGTGCTG 1 chr2L:4224226-4224346 ( 34) CAGTGCTG 1 chrX:2073413-2073533 ( 42) CAGTGCTG 1 chr2R:19178596-19178716 ( 92) CAGCGCTG 1 chr2L:19508715-19508835 ( 98) CAGCGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 1.9e+001 -1023 232 -1023 -1023 172 -1023 -1023 -1023 -1023 -1023 227 -1023 -1023 -26 127 20 -1023 -1023 227 -1023 -1023 232 -1023 -1023 -1023 -1023 -1023 178 -1023 -1023 227 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.9e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.500000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-3 regular expression -------------------------------------------------------------------------------- CAG[GT]GCTG -------------------------------------------------------------------------------- Time 19.77 secs. ******************************************************************************** ******************************************************************************** MOTIF CARCACTG MEME-4 width = 8 sites = 12 llr = 129 E-value = 7.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a7:a::: pos.-specific C a::a:a:: probability G ::3::::a matrix T ::::::a: bits 2.3 * * * * 2.1 * * * * 1.9 * * *** 1.6 ** ***** Relative 1.4 ** ***** Entropy 1.2 ** ***** (15.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15408324-15408444 9 1.32e-05 ACTGTGTG CAACACTG TTTTTGAGCA chr3L:21841306-21841426 100 1.32e-05 GTGCACCTTA CAACACTG TCCATAGCTA chrX:5309099-5309219 105 1.32e-05 TGCAGTTTAA CAACACTG CCAAACAC chr2L:14094826-14094946 35 1.32e-05 TCGTGCTAGC CAACACTG ATATCAGTGC chr3L:3896767-3896887 71 1.32e-05 TGGCAATTTA CAACACTG AAACCGGGCT chr2L:8437317-8437437 79 1.32e-05 TGGCCTTGTC CAACACTG TTCAGCCAGC chr3L:2377493-2377613 76 1.32e-05 CGCTGTTAGC CAACACTG AAAAGTGGGC chr2R:22066777-22066897 64 1.32e-05 TTGTCAAACG CAACACTG AAATCCGACT chr3L:21640869-21640989 7 2.22e-05 ACTGGG CAGCACTG GTAGCGCCAT chrX:13334943-13335063 98 2.22e-05 ACGAGTTTTG CAGCACTG AACTCGAGGG chrX:10744573-10744693 23 2.22e-05 GCAACAACAA CAGCACTG GTGATGTCGA chr3R:23763220-23763340 66 2.22e-05 GCTAGCTGCA CAGCACTG GCTGATAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15408324-15408444 1.3e-05 8_[+4]_104 chr3L:21841306-21841426 1.3e-05 99_[+4]_13 chrX:5309099-5309219 1.3e-05 104_[+4]_8 chr2L:14094826-14094946 1.3e-05 34_[+4]_78 chr3L:3896767-3896887 1.3e-05 70_[+4]_42 chr2L:8437317-8437437 1.3e-05 78_[+4]_34 chr3L:2377493-2377613 1.3e-05 75_[+4]_37 chr2R:22066777-22066897 1.3e-05 63_[+4]_49 chr3L:21640869-21640989 2.2e-05 6_[+4]_106 chrX:13334943-13335063 2.2e-05 97_[+4]_15 chrX:10744573-10744693 2.2e-05 22_[+4]_90 chr3R:23763220-23763340 2.2e-05 65_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCACTG width=8 seqs=12 chr3R:15408324-15408444 ( 9) CAACACTG 1 chr3L:21841306-21841426 ( 100) CAACACTG 1 chrX:5309099-5309219 ( 105) CAACACTG 1 chr2L:14094826-14094946 ( 35) CAACACTG 1 chr3L:3896767-3896887 ( 71) CAACACTG 1 chr2L:8437317-8437437 ( 79) CAACACTG 1 chr3L:2377493-2377613 ( 76) CAACACTG 1 chr2R:22066777-22066897 ( 64) CAACACTG 1 chr3L:21640869-21640989 ( 7) CAGCACTG 1 chrX:13334943-13335063 ( 98) CAGCACTG 1 chrX:10744573-10744693 ( 23) CAGCACTG 1 chr3R:23763220-23763340 ( 66) CAGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 7.2e+001 -1023 232 -1023 -1023 172 -1023 -1023 -1023 114 -1023 69 -1023 -1023 232 -1023 -1023 172 -1023 -1023 -1023 -1023 232 -1023 -1023 -1023 -1023 -1023 178 -1023 -1023 227 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 7.2e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-4 regular expression -------------------------------------------------------------------------------- CA[AG]CACTG -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCGCTG MEME-5 width = 8 sites = 15 llr = 147 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::1:2: pos.-specific C 1::a:8:: probability G :aa:9::9 matrix T 9::::281 bits 2.3 *** 2.1 *** 1.9 *** 1.6 **** * Relative 1.4 ****** * Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCTG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15408324-15408444 65 6.16e-06 AAACACCGTC TGGCGCTG TCAAATCGAG chr4:486677-486797 103 6.16e-06 TTCCAAAAGG TGGCGCTG CATGTACATC chr2R:21295537-21295657 30 6.16e-06 TCGCGACTTT TGGCGCTG TAACAGGCGT chr3L:14760062-14760182 45 6.16e-06 AAACCGTTTC TGGCGCTG CTCCTGCCGC chr2R:18971144-18971264 22 1.26e-05 TTGTTGCTGT TGGCGCAG GGTTGCATTC chr3R:9220176-9220296 14 1.26e-05 GAAAAAATCG TGGCGCAG AGATGATCTC chr3R:20558196-20558316 105 1.26e-05 CCGACGTTTG TGGCGCAG CCAACTTC chr3R:27245237-27245357 84 2.16e-05 TAGTGTGACA TGGCGTTG CCAGACAGTC chr3L:18114461-18114581 107 2.16e-05 ATCTACCGGG TGGCGTTG GTCTTT chr3L:2377493-2377613 39 2.16e-05 TGTTTCTGTC TGGCGTTG CCAAGCTGGG chr3L:2466703-2466823 2 4.35e-05 C TGGCGCTT TTTTCTCGTA chr3R:21161804-21161924 51 4.35e-05 AGCATTTTGT TGGCACTG CCTTGCGTTG chr2L:10437455-10437575 1 4.35e-05 . tggcactg ttgtttTTGA chrX:13329723-13329843 33 4.35e-05 CAGCGTTAAT CGGCGCTG CCTATCGCAA chr3R:10203666-10203786 109 4.35e-05 TGACAACAGA TGGCGCTT TGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15408324-15408444 6.2e-06 64_[+5]_48 chr4:486677-486797 6.2e-06 102_[+5]_10 chr2R:21295537-21295657 6.2e-06 29_[+5]_83 chr3L:14760062-14760182 6.2e-06 44_[+5]_68 chr2R:18971144-18971264 1.3e-05 21_[+5]_91 chr3R:9220176-9220296 1.3e-05 13_[+5]_99 chr3R:20558196-20558316 1.3e-05 104_[+5]_8 chr3R:27245237-27245357 2.2e-05 83_[+5]_29 chr3L:18114461-18114581 2.2e-05 106_[+5]_6 chr3L:2377493-2377613 2.2e-05 38_[+5]_74 chr3L:2466703-2466823 4.3e-05 1_[+5]_111 chr3R:21161804-21161924 4.3e-05 50_[+5]_62 chr2L:10437455-10437575 4.3e-05 [+5]_112 chrX:13329723-13329843 4.3e-05 32_[+5]_80 chr3R:10203666-10203786 4.3e-05 108_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCTG width=8 seqs=15 chr3R:15408324-15408444 ( 65) TGGCGCTG 1 chr4:486677-486797 ( 103) TGGCGCTG 1 chr2R:21295537-21295657 ( 30) TGGCGCTG 1 chr3L:14760062-14760182 ( 45) TGGCGCTG 1 chr2R:18971144-18971264 ( 22) TGGCGCAG 1 chr3R:9220176-9220296 ( 14) TGGCGCAG 1 chr3R:20558196-20558316 ( 105) TGGCGCAG 1 chr3R:27245237-27245357 ( 84) TGGCGTTG 1 chr3L:18114461-18114581 ( 107) TGGCGTTG 1 chr3L:2377493-2377613 ( 39) TGGCGTTG 1 chr3L:2466703-2466823 ( 2) TGGCGCTT 1 chr3R:21161804-21161924 ( 51) TGGCACTG 1 chr2L:10437455-10437575 ( 1) TGGCACTG 1 chrX:13329723-13329843 ( 33) CGGCGCTG 1 chr3R:10203666-10203786 ( 109) TGGCGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.1e+004 -1055 -158 -1055 168 -1055 -1055 227 -1055 -1055 -1055 227 -1055 -1055 232 -1055 -1055 -118 -1055 207 -1055 -1055 200 -1055 -54 -60 -1055 -1055 146 -1055 -1055 207 -113 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.1e+004 0.000000 0.066667 0.000000 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.133333 0.000000 0.866667 0.000000 0.000000 0.800000 0.000000 0.200000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.866667 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCTG MEME-5 regular expression -------------------------------------------------------------------------------- TGGCG[CT][TA]G -------------------------------------------------------------------------------- Time 32.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15657986-15658106 4.22e-01 120 chr2R:9273471-9273591 2.99e-01 73_[+1(9.62e-05)]_39 chr3L:20097402-20097522 9.26e-01 120 chr3L:15689574-15689694 3.69e-01 120 chr2R:18774928-18775048 6.63e-01 120 chr2L:20840594-20840714 3.70e-01 120 chr3L:21205117-21205237 9.75e-01 120 chr2R:22066777-22066897 7.88e-04 63_[+4(1.32e-05)]_49 chr3L:10866738-10866858 4.22e-01 120 chr3R:14569663-14569783 2.25e-02 120 chr2L:2873432-2873552 9.98e-01 120 chrX:13394482-13394602 7.14e-01 120 chr3L:11258531-11258651 7.42e-01 120 chr3R:30489937-30490057 1.12e-01 120 chr3R:10407323-10407443 1.52e-03 12_[+1(2.82e-05)]_25_[+2(1.93e-05)]_\ 67 chr2R:14488703-14488823 5.46e-01 120 chr3R:23157870-23157990 3.64e-02 35_[+1(2.82e-05)]_77 chr3R:9875771-9875891 7.09e-01 120 chr3R:15178371-15178491 1.95e-01 120 chr3R:29895203-29895323 5.79e-01 120 chr3L:19939279-19939399 8.16e-01 120 chr2L:2735061-2735181 1.84e-01 120 chr3L:7760107-7760227 1.44e-01 120 chr2L:4403163-4403283 3.89e-02 59_[+1(6.68e-05)]_3_[+1(9.62e-05)]_\ 42 chr3R:26952374-26952494 9.00e-01 120 chr3L:4521918-4522038 1.71e-01 120 chr3R:29868682-29868802 2.47e-01 120 chr3L:3320175-3320295 4.45e-02 120 chr3R:12719786-12719906 2.92e-02 120 chr3R:9450729-9450849 9.25e-01 120 chr2L:18708021-18708141 9.82e-02 13_[+4(4.36e-05)]_99 chr3L:7861188-7861308 9.89e-01 120 chr3L:2377493-2377613 2.33e-04 38_[+5(2.16e-05)]_29_[+4(1.32e-05)]_\ 37 chr3R:9057070-9057190 3.72e-01 120 chr2R:17267209-17267329 7.03e-01 120 chrX:7703142-7703262 9.02e-01 120 chr2L:10298464-10298584 7.94e-01 120 chr2R:16344401-16344521 2.57e-01 120 chr3L:11721626-11721746 3.17e-01 120 chr3L:19294393-19294513 2.77e-02 32_[+1(9.62e-05)]_80 chr3L:833345-833465 4.34e-03 81_[+1(2.82e-05)]_21_[+1(2.82e-05)]_\ 2 chr2R:21160552-21160672 2.24e-03 38_[+1(4.75e-05)]_18_[+1(2.82e-05)]_\ 48 chr3L:11580091-11580211 5.50e-01 120 chr3L:10362734-10362854 7.07e-01 120 chr2R:24571562-24571682 7.97e-01 120 chrX:16105803-16105923 4.78e-01 120 chr3L:7869011-7869131 6.67e-01 120 chr2R:23970053-23970173 4.62e-03 27_[+2(1.93e-05)]_85 chrX:11391589-11391709 9.10e-01 120 chr3R:9701478-9701598 8.63e-03 120 chr2L:16817710-16817830 7.24e-01 120 chr2L:2220733-2220853 6.54e-01 120 chr3L:16713710-16713830 9.75e-01 120 chr3L:11253415-11253535 1.80e-01 120 chr2L:3058799-3058919 9.05e-01 120 chr2L:6050737-6050857 4.22e-02 28_[+1(9.62e-05)]_45_[+1(6.68e-05)]_\ 12_[+1(6.68e-05)]_11 chr3R:23763220-23763340 1.07e-02 65_[+4(2.22e-05)]_47 chr3R:8811025-8811145 2.99e-01 120 chr3L:4446043-4446163 8.13e-01 120 chr2L:18320260-18320380 5.66e-03 11_[+2(4.52e-05)]_101 chr3L:5819408-5819528 8.99e-01 120 chr3R:8980097-8980217 9.92e-01 120 chr3R:17040573-17040693 1.11e-02 94_[+1(2.82e-05)]_18 chrX:10744573-10744693 2.68e-03 22_[+4(2.22e-05)]_90 chr2R:21091939-21092059 9.77e-01 120 chr3R:12406322-12406442 2.24e-01 94_[+1(6.68e-05)]_18 chr2L:1177609-1177729 1.40e-04 59_[+2(3.25e-05)]_6_[+1(2.82e-05)]_\ 39 chr3L:10679939-10680059 9.98e-01 120 chrX:2073413-2073533 4.26e-02 41_[+3(1.54e-05)]_71 chr3R:20558196-20558316 3.26e-02 104_[+5(1.26e-05)]_8 chr2L:8437317-8437437 2.43e-03 78_[+4(1.32e-05)]_34 chr2R:21634634-21634754 6.57e-01 120 chr2L:4224226-4224346 7.64e-02 33_[+3(1.54e-05)]_79 chr2R:22641378-22641498 2.92e-04 82_[+1(2.82e-05)]_9_[+1(2.82e-05)]_\ 13 chr2R:18811983-18812103 7.50e-01 120 chr2R:6494323-6494443 4.11e-04 1_[+2(1.93e-05)]_17_[+1(6.68e-05)]_\ 8_[+1(2.82e-05)]_70 chr3R:23028660-23028780 9.65e-01 120 chrX:17887199-17887319 2.64e-02 7_[+1(4.75e-05)]_105 chr3L:3197597-3197717 7.91e-02 120 chr2L:7940830-7940950 1.49e-01 120 chr2R:22669318-22669438 3.79e-01 120 chr3R:17682551-17682671 6.21e-02 120 chr3L:17597117-17597237 6.75e-01 120 chr2R:14302757-14302877 1.47e-03 37_[+1(2.82e-05)]_75 chr2R:4188070-4188190 2.09e-01 120 chr3L:20518192-20518312 9.97e-01 120 chr2L:16271612-16271732 9.95e-01 120 chr3L:14760062-14760182 6.34e-03 44_[+5(6.16e-06)]_68 chr2L:8350652-8350772 7.28e-01 120 chr3R:10203666-10203786 4.83e-02 108_[+5(4.35e-05)]_4 chr3R:8233412-8233532 2.72e-03 38_[+3(4.57e-05)]_74 chrX:13329723-13329843 8.18e-06 12_[+1(4.75e-05)]_12_[+5(4.35e-05)]_\ 80 chr2R:9544765-9544885 8.48e-01 120 chr2R:9285011-9285131 8.34e-01 120 chr3L:8689810-8689930 7.78e-01 120 chr2R:17161048-17161168 8.88e-01 120 chr3L:12803820-12803940 9.78e-01 120 chrX:18899881-18900001 9.59e-01 120 chrX:13334943-13335063 7.02e-03 97_[+4(2.22e-05)]_15 chr3L:17791647-17791767 2.42e-01 120 chr2R:23702330-23702450 6.22e-01 120 chr2L:13082325-13082445 8.95e-01 120 chr3R:9220176-9220296 1.00e-02 13_[+5(1.26e-05)]_99 chr3R:20829059-20829179 1.04e-01 120 chr3R:12369236-12369356 1.84e-01 120 chr2R:6881085-6881205 3.89e-01 120 chr2L:10437455-10437575 1.27e-03 [+5(4.35e-05)]_112 chr3R:22023349-22023469 9.46e-01 120 chr2R:7071002-7071122 9.29e-03 32_[+5(7.56e-05)]_80 chr3R:26121360-26121480 7.54e-01 120 chrX:5286008-5286128 9.77e-01 120 chr2L:7412301-7412421 6.85e-01 120 chr3R:14361724-14361844 2.70e-01 120 chr2R:13999223-13999343 9.96e-01 120 chr3L:17659314-17659434 5.91e-01 120 chr3L:19092530-19092650 1.10e-01 45_[+1(9.62e-05)]_[+1(6.68e-05)]_59 chr2L:10221292-10221412 1.65e-03 42_[+1(2.82e-05)]_42_[+2(1.93e-05)]_\ 20 chr2R:21295537-21295657 1.64e-04 29_[+5(6.16e-06)]_59_[+3(6.41e-06)]_\ 16 chr3R:10882216-10882336 1.68e-03 23_[+2(1.93e-05)]_89 chrX:12466750-12466870 9.12e-01 120 chr2L:20881543-20881663 5.13e-01 120 chr3R:10696536-10696656 4.19e-02 106_[+2(1.93e-05)]_6 chr2L:18136705-18136825 9.64e-01 120 chr3R:9047722-9047842 4.41e-02 120 chrX:1370122-1370242 4.85e-01 120 chr2R:11185732-11185852 8.55e-01 120 chr3L:18114461-18114581 3.38e-02 106_[+5(2.16e-05)]_6 chr3R:18918924-18919044 2.60e-01 120 chr2R:10096794-10096914 8.76e-04 107_[+1(2.82e-05)]_5 chr3L:3896767-3896887 1.03e-03 70_[+4(1.32e-05)]_3_[+3(4.57e-05)]_\ 31 chr2R:13586467-13586587 3.26e-01 120 chr3L:15921355-15921475 6.61e-01 120 chr2L:19508715-19508835 2.13e-06 24_[+1(4.75e-05)]_9_[+2(6.37e-05)]_\ 48_[+3(2.16e-05)]_15 chr3R:24625552-24625672 1.87e-02 74_[+1(2.82e-05)]_38 chr3L:7978928-7979048 6.07e-03 16_[+1(6.68e-05)]_41_[+1(4.75e-05)]_\ 47 chr3L:11049568-11049688 1.17e-01 120 chr2R:17748509-17748629 4.02e-01 120 chr3R:9055171-9055291 9.97e-01 120 chr2R:13995645-13995765 9.51e-01 120 chr3L:8584182-8584302 7.30e-01 120 chrX:16441464-16441584 1.77e-04 37_[+2(1.93e-05)]_19_[+1(2.82e-05)]_\ 48 chr3R:5600342-5600462 8.13e-01 120 chrX:15582911-15583031 7.45e-01 120 chr2L:14094826-14094946 1.88e-02 34_[+4(1.32e-05)]_78 chr3R:21161804-21161924 1.95e-01 50_[+5(4.35e-05)]_62 chr3R:27130134-27130254 8.68e-01 120 chr3L:19933027-19933147 7.10e-01 120 chr2L:17470767-17470887 9.87e-01 120 chr2R:7012204-7012324 4.55e-01 120 chr3L:872695-872815 8.22e-01 120 chr3R:4220890-4221010 5.56e-05 14_[+1(2.82e-05)]_16_[+1(4.75e-05)]_\ 22_[+2(3.25e-05)]_44 chrX:16286213-16286333 4.19e-03 12_[+1(2.82e-05)]_84_[+2(3.25e-05)]_\ 8 chrX:19208184-19208304 2.19e-04 8_[+1(9.62e-05)]_104 chr3R:10168804-10168924 6.69e-02 120 chr2L:1108386-1108506 3.14e-02 18_[+3(6.41e-06)]_94 chr2R:14362907-14363027 1.14e-01 79_[+1(6.68e-05)]_33 chr3R:5758986-5759106 4.47e-02 15_[+2(1.93e-05)]_97 chrX:3134520-3134640 7.05e-01 120 chr3R:21218973-21219093 1.33e-01 109_[+1(4.75e-05)]_3 chr3R:20948101-20948221 4.67e-01 120 chr3R:22596647-22596767 2.37e-01 120 chr2R:7748185-7748305 1.22e-01 120 chr2L:7033431-7033551 3.20e-03 91_[+3(6.41e-06)]_21 chrX:16650550-16650670 8.35e-01 120 chr2L:6338872-6338992 4.82e-01 120 chr2R:9092970-9093090 5.13e-01 120 chr2R:12605726-12605846 9.27e-01 120 chr2R:16170826-16170946 3.42e-02 14_[+3(1.54e-05)]_98 chr2L:16317853-16317973 7.46e-01 120 chr3R:23334963-23335083 7.45e-01 120 chr2R:8080106-8080226 7.84e-02 75_[+1(4.75e-05)]_37 chr3R:27131511-27131631 9.41e-01 120 chr3L:21640869-21640989 1.18e-02 6_[+4(2.22e-05)]_106 chr3R:27245237-27245357 1.06e-02 83_[+5(2.16e-05)]_29 chr3L:18625997-18626117 2.20e-02 45_[+2(7.69e-05)]_67 chr3R:30058076-30058196 2.08e-01 120 chrX:13391248-13391368 4.59e-02 120 chr2R:24965028-24965148 4.26e-04 89_[+3(6.41e-06)]_15_[+2(1.93e-05)] chr3L:5752212-5752332 2.52e-03 41_[+1(2.82e-05)]_71 chrX:18370867-18370987 6.96e-03 58_[+1(6.68e-05)]_54 chr3L:9127450-9127570 5.95e-01 120 chr2L:18567698-18567818 8.52e-01 120 chr3R:26654679-26654799 2.53e-01 120 chr4:867015-867135 3.14e-01 120 chr3L:14762356-14762476 9.85e-01 120 chr2L:7496213-7496333 1.58e-01 120 chr2R:7699130-7699250 2.43e-01 120 chrX:2146275-2146395 3.34e-01 120 chr3R:24944927-24945047 2.08e-05 16_[+1(9.62e-05)]_29_[+3(6.41e-06)]_\ 3_[+2(1.93e-05)]_48 chrX:4610553-4610673 3.88e-01 120 chr2L:2037534-2037654 2.13e-01 120 chr3L:13006637-13006757 2.63e-01 103_[+1(9.62e-05)]_9 chr3L:7360454-7360574 2.73e-02 65_[+1(2.82e-05)]_47 chr3L:18673112-18673232 9.40e-03 76_[+1(4.75e-05)]_36 chr3R:25123358-25123478 3.63e-03 23_[+2(1.93e-05)]_89 chr3R:26130675-26130795 1.92e-01 120 chr2R:14352122-14352242 2.65e-02 43_[+1(9.62e-05)]_69 chr3R:26536807-26536927 2.52e-01 120 chr2L:21237255-21237375 2.73e-01 120 chr2R:16129429-16129549 9.56e-01 120 chr3L:4139026-4139146 6.66e-03 7_[+1(2.82e-05)]_105 chr3R:15320109-15320229 5.31e-01 120 chr2L:4892094-4892214 2.14e-01 120 chr3L:7348087-7348207 9.42e-01 120 chr3R:14283167-14283287 5.70e-01 120 chr3L:6743151-6743271 2.04e-02 120 chr3L:11993131-11993251 8.88e-02 120 chr3R:20989811-20989931 9.92e-01 120 chr3R:20830458-20830578 6.77e-01 120 chrX:4554185-4554305 7.75e-01 120 chr3R:12718227-12718347 3.72e-01 120 chr3L:9442235-9442355 3.02e-03 40_[+3(6.41e-06)]_72 chrX:5309099-5309219 1.47e-02 104_[+4(1.32e-05)]_8 chr3L:15142410-15142530 6.07e-01 120 chr3R:15973713-15973833 2.51e-01 120 chrX:1171228-1171348 1.91e-01 120 chr3L:20785128-20785248 1.35e-01 120 chr3L:21841306-21841426 1.46e-03 48_[+2(1.93e-05)]_26_[+2(6.37e-05)]_\ 9_[+4(1.32e-05)]_5_[+2(3.25e-05)] chr2L:5009650-5009770 2.76e-04 75_[+5(7.56e-05)]_10_[+1(4.75e-05)]_\ 19 chr3L:9128147-9128267 4.54e-01 120 chr3L:2265763-2265883 2.71e-02 67_[+2(4.52e-05)]_45 chr4:486677-486797 1.64e-02 102_[+5(6.16e-06)]_10 chr2R:16571755-16571875 8.85e-03 35_[+1(4.75e-05)]_35_[+4(4.36e-05)]_\ 34 chrX:15844364-15844484 2.95e-02 80_[+1(2.82e-05)]_32 chr2R:10853383-10853503 9.80e-01 120 chr2L:3872464-3872584 1.64e-02 120 chr3L:19337844-19337964 2.86e-01 120 chr2L:16487662-16487782 8.50e-02 100_[+2(1.93e-05)]_12 chr2R:6085695-6085815 1.94e-01 120 chr3L:2466703-2466823 1.85e-01 1_[+5(4.35e-05)]_111 chr2L:7641787-7641907 3.61e-01 120 chr2R:10142319-10142439 3.85e-01 120 chr2R:19184039-19184159 6.95e-01 120 chr3R:10675296-10675416 3.92e-01 120 chr2R:19290043-19290163 5.56e-01 120 chr2R:15848040-15848160 1.34e-01 120 chr3L:6816315-6816435 7.30e-01 120 chr2R:15114546-15114666 8.04e-01 120 chr2R:19178596-19178716 2.65e-06 40_[+1(2.82e-05)]_43_[+3(2.16e-05)]_\ 1_[+1(2.82e-05)]_12 chr3R:15408324-15408444 3.11e-06 8_[+4(1.32e-05)]_27_[+1(9.62e-05)]_\ 13_[+5(6.16e-06)]_48 chr3R:24586765-24586885 2.04e-01 120 chr2R:9440370-9440490 5.53e-01 120 chrX:7015143-7015263 1.27e-01 120 chr3R:26188860-26188980 4.62e-01 120 chr3L:23095419-23095539 6.42e-01 120 chrX:6803548-6803668 1.94e-04 13_[+3(1.54e-05)]_58_[+1(9.62e-05)]_\ 33 chr2R:12633454-12633574 1.31e-01 107_[+1(6.68e-05)]_5 chr2R:24565551-24565671 9.08e-01 120 chr3L:17653595-17653715 3.90e-02 120 chr2R:18971144-18971264 2.88e-03 21_[+5(1.26e-05)]_91 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************