******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/lov.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:26035818-26035938 1.0000 120 chr2R:24061069-24061189 1.0000 120 chr3R:10570808-10570928 1.0000 120 chrX:2136008-2136128 1.0000 120 chr2R:22250360-22250480 1.0000 120 chr2L:11793854-11793974 1.0000 120 chr2R:13555025-13555145 1.0000 120 chr3R:26036071-26036191 1.0000 120 chr2L:13892996-13893116 1.0000 120 chr2L:108517-108637 1.0000 120 chr2L:10260526-10260646 1.0000 120 chr3R:5212053-5212173 1.0000 120 chr2L:19571268-19571388 1.0000 120 chr3L:12515330-12515450 1.0000 120 chr2L:5240684-5240804 1.0000 120 chr3R:17618137-17618257 1.0000 120 chr3L:21026014-21026134 1.0000 120 chr2L:10260282-10260402 1.0000 120 chr2R:14220606-14220726 1.0000 120 chr2R:13028294-13028414 1.0000 120 chr2L:1556887-1557007 1.0000 120 chr3L:18272943-18273063 1.0000 120 chr2R:12587776-12587896 1.0000 120 chr2L:3152816-3152936 1.0000 120 chr2L:14508940-14509060 1.0000 120 chr3R:17682100-17682220 1.0000 120 chr2L:6611225-6611345 1.0000 120 chr3R:4649764-4649884 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_lov/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/lov.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 28 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 3360 N= 28 sample: seed= 0 hsfrac= 0 searchsize= 3360 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.231 G 0.218 T 0.262 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.231 G 0.218 T 0.262 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTSTTK MEME-1 width = 8 sites = 12 llr = 95 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::11::: pos.-specific C ::::3:11 probability G ::126::5 matrix T aa98:a94 bits 2.2 2.0 ** * 1.8 ** * 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (11.4 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6611225-6611345 66 1.54e-05 AACTATTTCG TTTtgttg ttgtagttgt chr2L:19571268-19571388 111 1.54e-05 GTTTATAATA TTTTGTTG GT chr2L:10260526-10260646 18 3.38e-05 GGCAACTGTT TTTTGTTT TATCTCGCCG chrX:2136008-2136128 110 3.38e-05 GGCGTTTTGT TTTTGTTT TCG chr3R:17618137-17618257 97 5.01e-05 AAGCAAGGCA TTTTCTTG AGTAAGCCTC chr3L:21026014-21026134 60 9.79e-05 GCGACTATTT TTTGGTTT CGAAAAACAA chr3R:5212053-5212173 62 1.41e-04 AGGGGTGGAA TTGTGTTG CACCAACACC chr2L:10260282-10260402 91 1.74e-04 AACAGAGTTC TTTTATTG AAGCCCAACG chr3L:12515330-12515450 20 2.08e-04 GCTATAATTG TTTGCTTT TGACAGAGAA chr2R:22250360-22250480 17 2.40e-04 TCCCCATCAC TTTTCTTC ACCCATCCAG chr2R:12587776-12587896 75 3.01e-04 CGAATTAATA TTTAGTTT TTTACTGTTA chr2L:13892996-13893116 62 3.29e-04 CATAAGCGAT TTTTCTCG CTTGACTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6611225-6611345 1.5e-05 65_[+1]_47 chr2L:19571268-19571388 1.5e-05 110_[+1]_2 chr2L:10260526-10260646 3.4e-05 17_[+1]_95 chrX:2136008-2136128 3.4e-05 109_[+1]_3 chr3R:17618137-17618257 5e-05 96_[+1]_16 chr3L:21026014-21026134 9.8e-05 59_[+1]_53 chr3R:5212053-5212173 0.00014 61_[+1]_51 chr2L:10260282-10260402 0.00017 90_[+1]_22 chr3L:12515330-12515450 0.00021 19_[+1]_93 chr2R:22250360-22250480 0.00024 16_[+1]_96 chr2R:12587776-12587896 0.0003 74_[+1]_38 chr2L:13892996-13893116 0.00033 61_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTSTTK width=8 seqs=12 chr2L:6611225-6611345 ( 66) TTTTGTTG 1 chr2L:19571268-19571388 ( 111) TTTTGTTG 1 chr2L:10260526-10260646 ( 18) TTTTGTTT 1 chrX:2136008-2136128 ( 110) TTTTGTTT 1 chr3R:17618137-17618257 ( 97) TTTTCTTG 1 chr3L:21026014-21026134 ( 60) TTTGGTTT 1 chr3R:5212053-5212173 ( 62) TTGTGTTG 1 chr2L:10260282-10260402 ( 91) TTTTATTG 1 chr3L:12515330-12515450 ( 20) TTTGCTTT 1 chr2R:22250360-22250480 ( 17) TTTTCTTC 1 chr2R:12587776-12587896 ( 75) TTTAGTTT 1 chr2L:13892996-13893116 ( 62) TTTTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3164 bayes= 8.48601 E= 3.9e+003 -1023 -1023 -1023 193 -1023 -1023 -1023 193 -1023 -1023 -139 181 -179 -1023 -39 152 -179 53 142 -1023 -1023 -1023 -1023 193 -1023 -147 -1023 181 -1023 -147 120 67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.083333 0.000000 0.166667 0.750000 0.083333 0.333333 0.583333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.083333 0.500000 0.416667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSTTK MEME-1 regular expression -------------------------------------------------------------------------------- TTTT[GC]TT[GT] -------------------------------------------------------------------------------- Time 1.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CABCAACA MEME-2 width = 8 sites = 11 llr = 89 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :912aa:9 pos.-specific C a:47::a1 probability G :13::::: matrix T ::31:::: bits 2.2 * * 2.0 * * 1.8 * *** 1.5 * *** Relative 1.3 ** **** Entropy 1.1 ** **** (11.7 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel CACCAACA consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21026014-21026134 1 1.99e-05 . CACCAACA CATGCACTCG chr3R:5212053-5212173 70 1.99e-05 AATTGTGTTG CACCAACA CCCCTCATAC chr2L:108517-108637 74 1.99e-05 CCCCCAGCTC CACCAACA ATTTAGCCGA chr2L:1556887-1557007 2 3.86e-05 a cagcaaca aaaacaacaa chr2R:14220606-14220726 99 3.86e-05 aacaacgcag cagcaaca tcgacagcag chr3R:10570808-10570928 69 1.11e-04 gacgggcAAT CAACAACA TAATTAAAGA chr3L:12515330-12515450 55 1.34e-04 TGCCTGTTGG CAGAAACA TTTAATAATA chr3R:26035818-26035938 35 1.93e-04 TCGAGAAATC CATAAACA CTTACTCTAA chr2R:12587776-12587896 109 2.16e-04 CACTCTGGCG CACTAACA CAGC chr3R:17682100-17682220 83 3.01e-04 CCACTTGCAA CGTCAACA ATTTTCACAA chr2R:13555025-13555145 106 3.01e-04 CACTGGATCC CATCAACC AGAAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21026014-21026134 2e-05 [+2]_112 chr3R:5212053-5212173 2e-05 69_[+2]_43 chr2L:108517-108637 2e-05 73_[+2]_39 chr2L:1556887-1557007 3.9e-05 1_[+2]_111 chr2R:14220606-14220726 3.9e-05 98_[+2]_14 chr3R:10570808-10570928 0.00011 68_[+2]_44 chr3L:12515330-12515450 0.00013 54_[+2]_58 chr3R:26035818-26035938 0.00019 34_[+2]_78 chr2R:12587776-12587896 0.00022 108_[+2]_4 chr3R:17682100-17682220 0.0003 82_[+2]_30 chr2R:13555025-13555145 0.0003 105_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CABCAACA width=8 seqs=11 chr3L:21026014-21026134 ( 1) CACCAACA 1 chr3R:5212053-5212173 ( 70) CACCAACA 1 chr2L:108517-108637 ( 74) CACCAACA 1 chr2L:1556887-1557007 ( 2) CAGCAACA 1 chr2R:14220606-14220726 ( 99) CAGCAACA 1 chr3R:10570808-10570928 ( 69) CAACAACA 1 chr3L:12515330-12515450 ( 55) CAGAAACA 1 chr3R:26035818-26035938 ( 35) CATAAACA 1 chr2R:12587776-12587896 ( 109) CACTAACA 1 chr3R:17682100-17682220 ( 83) CGTCAACA 1 chr2R:13555025-13555145 ( 106) CATCAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3164 bayes= 8.51927 E= 2.6e+003 -1010 212 -1010 -1010 165 -1010 -126 -1010 -167 66 32 6 -67 166 -1010 -152 179 -1010 -1010 -1010 179 -1010 -1010 -1010 -1010 212 -1010 -1010 165 -134 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.6e+003 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.090909 0.363636 0.272727 0.272727 0.181818 0.727273 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CABCAACA MEME-2 regular expression -------------------------------------------------------------------------------- CA[CGT]CAACA -------------------------------------------------------------------------------- Time 1.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CGRSGGCC MEME-3 width = 8 sites = 2 llr = 21 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C a::5::aa probability G :a55aa:: matrix T :::::::: bits 2.2 ** **** 2.0 ** **** 1.8 ** **** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGACGGCC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19571268-19571388 93 1.25e-05 TCAAGATCAG CGGCGGCC GTTTATAATA chr2R:13555025-13555145 34 2.05e-05 AGAACCTGTA CGAGGGCC TCACCATGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19571268-19571388 1.2e-05 92_[+3]_20 chr2R:13555025-13555145 2.1e-05 33_[+3]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGRSGGCC width=8 seqs=2 chr2L:19571268-19571388 ( 93) CGGCGGCC 1 chr2R:13555025-13555145 ( 34) CGAGGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3164 bayes= 10.6266 E= 2.1e+004 -765 211 -765 -765 -765 -765 219 -765 79 -765 119 -765 -765 111 119 -765 -765 -765 219 -765 -765 -765 219 -765 -765 211 -765 -765 -765 211 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRSGGCC MEME-3 regular expression -------------------------------------------------------------------------------- CG[AG][CG]GGCC -------------------------------------------------------------------------------- Time 2.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGWGG MEME-4 width = 8 sites = 2 llr = 22 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C :::::::: probability G aaa:a:aa matrix T :::a:5:: bits 2.2 *** * ** 2.0 ***** ** 1.8 ***** ** 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (16.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTGAGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13028294-13028414 105 7.37e-06 CTAGGTGAAG GGGTGTGG AGAACGAG chr2L:1556887-1557007 72 1.55e-05 atgaatgcct gggtgagg gaatgaGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13028294-13028414 7.4e-06 104_[+4]_8 chr2L:1556887-1557007 1.5e-05 71_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGWGG width=8 seqs=2 chr2R:13028294-13028414 ( 105) GGGTGTGG 1 chr2L:1556887-1557007 ( 72) GGGTGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3164 bayes= 10.6266 E= 3.7e+003 -765 -765 219 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 -765 193 -765 -765 219 -765 79 -765 -765 93 -765 -765 219 -765 -765 -765 219 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGWGG MEME-4 regular expression -------------------------------------------------------------------------------- GGGTG[AT]GG -------------------------------------------------------------------------------- Time 2.43 secs. ******************************************************************************** ******************************************************************************** MOTIF KGCAGGKG MEME-5 width = 8 sites = 2 llr = 21 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C ::a::::: probability G 5a::aa5a matrix T 5:::::5: bits 2.2 ** ** * 2.0 ** ** * 1.8 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGGGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4649764-4649884 33 7.17e-06 ATTACGGCGT GGCAGGGG ATCTTGCAGA chr2R:13555025-13555145 66 3.47e-05 GCCTCGCTGC TGCAGGTG TTCAAGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4649764-4649884 7.2e-06 32_[+5]_80 chr2R:13555025-13555145 3.5e-05 65_[+5]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCAGGKG width=8 seqs=2 chr3R:4649764-4649884 ( 33) GGCAGGGG 1 chr2R:13555025-13555145 ( 66) TGCAGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3164 bayes= 10.6266 E= 2.1e+004 -765 -765 119 93 -765 -765 219 -765 -765 211 -765 -765 178 -765 -765 -765 -765 -765 219 -765 -765 -765 219 -765 -765 -765 119 93 -765 -765 219 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+004 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGKG MEME-5 regular expression -------------------------------------------------------------------------------- [GT]GCAGG[GT]G -------------------------------------------------------------------------------- Time 2.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26035818-26035938 5.10e-01 120 chr2R:24061069-24061189 6.75e-01 120 chr3R:10570808-10570928 2.67e-01 120 chrX:2136008-2136128 1.49e-02 103_[+1(3.38e-05)]_9 chr2R:22250360-22250480 4.10e-01 120 chr2L:11793854-11793974 7.20e-01 120 chr2R:13555025-13555145 6.62e-04 33_[+3(2.05e-05)]_24_[+5(3.47e-05)]_\ 47 chr3R:26036071-26036191 6.68e-01 120 chr2L:13892996-13893116 4.03e-01 120 chr2L:108517-108637 1.68e-01 73_[+2(1.99e-05)]_39 chr2L:10260526-10260646 1.26e-01 17_[+1(3.38e-05)]_95 chr3R:5212053-5212173 1.89e-04 69_[+2(1.99e-05)]_43 chr2L:19571268-19571388 9.95e-04 92_[+3(1.25e-05)]_10_[+1(1.54e-05)]_\ 2 chr3L:12515330-12515450 1.43e-02 120 chr2L:5240684-5240804 7.52e-01 120 chr3R:17618137-17618257 9.35e-02 96_[+1(5.01e-05)]_16 chr3L:21026014-21026134 1.67e-02 [+2(1.99e-05)]_51_[+1(9.79e-05)]_53 chr2L:10260282-10260402 4.54e-01 120 chr2R:14220606-14220726 1.21e-01 84_[+2(3.86e-05)]_6_[+2(3.86e-05)]_\ 14 chr2R:13028294-13028414 3.87e-03 104_[+4(7.37e-06)]_8 chr2L:1556887-1557007 2.20e-05 1_[+2(3.86e-05)]_62_[+4(1.55e-05)]_\ 41 chr3L:18272943-18273063 9.69e-01 120 chr2R:12587776-12587896 1.52e-01 120 chr2L:3152816-3152936 6.91e-01 120 chr2L:14508940-14509060 2.27e-01 120 chr3R:17682100-17682220 6.68e-01 120 chr2L:6611225-6611345 1.27e-02 65_[+1(1.54e-05)]_47 chr3R:4649764-4649884 1.79e-02 32_[+5(7.17e-06)]_80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************