******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/lilli.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30174320-30174440 1.0000 120 chr2L:14616352-14616472 1.0000 120 chr2R:20944099-20944219 1.0000 120 chr2L:2944668-2944788 1.0000 120 chr3L:22669407-22669527 1.0000 120 chr3L:224247-224367 1.0000 120 chr2L:3713102-3713222 1.0000 120 chr3L:14977291-14977411 1.0000 120 chr3L:9838654-9838774 1.0000 120 chr2L:1043786-1043906 1.0000 120 chr3R:18918484-18918604 1.0000 120 chrX:18899967-18900087 1.0000 120 chr2R:12173455-12173575 1.0000 120 chr2R:10265459-10265579 1.0000 120 chrX:7703086-7703206 1.0000 120 chr2R:16202936-16203056 1.0000 120 chrX:15120251-15120371 1.0000 120 chr2R:22737987-22738107 1.0000 120 chr2L:2873480-2873600 1.0000 120 chr2L:5972143-5972263 1.0000 120 chr2L:14616552-14616672 1.0000 120 chrX:8233343-8233463 1.0000 120 chr2L:8738344-8738464 1.0000 120 chrX:8141444-8141564 1.0000 120 chrX:18494269-18494389 1.0000 120 chr3R:7821737-7821857 1.0000 120 chrX:14169208-14169328 1.0000 120 chr2R:17161028-17161148 1.0000 120 chr3L:15565904-15566024 1.0000 120 chr3R:23941725-23941845 1.0000 120 chr2L:19490271-19490391 1.0000 120 chrX:16650568-16650688 1.0000 120 chr3L:18898137-18898257 1.0000 120 chr3R:18918285-18918405 1.0000 120 chrX:13676539-13676659 1.0000 120 chr2L:8894391-8894511 1.0000 120 chr3R:20574843-20574963 1.0000 120 chr3L:6495570-6495690 1.0000 120 chr3R:16704403-16704523 1.0000 120 chr3R:8524436-8524556 1.0000 120 chrX:13333059-13333179 1.0000 120 chr2L:16251958-16252078 1.0000 120 chr3L:20389152-20389272 1.0000 120 chr3R:15292431-15292551 1.0000 120 chr2L:3058802-3058922 1.0000 120 chrX:8677592-8677712 1.0000 120 chr2R:14411682-14411802 1.0000 120 chr3R:4654672-4654792 1.0000 120 chr2R:24629579-24629699 1.0000 120 chr2L:16817743-16817863 1.0000 120 chr3L:13929289-13929409 1.0000 120 chrX:947612-947732 1.0000 120 chr3R:21118919-21119039 1.0000 120 chr3L:8177960-8178080 1.0000 120 chrX:8900266-8900386 1.0000 120 chr3R:9430536-9430656 1.0000 120 chr3R:11628571-11628691 1.0000 120 chr2R:7987866-7987986 1.0000 120 chr3R:14741466-14741586 1.0000 120 chrX:6695052-6695172 1.0000 120 chr2L:7443086-7443206 1.0000 120 chr3R:7500666-7500786 1.0000 120 chr3R:30134749-30134869 1.0000 120 chr2R:13438089-13438209 1.0000 120 chrX:16103574-16103694 1.0000 120 chr2L:20881495-20881615 1.0000 120 chr2R:23202167-23202287 1.0000 120 chr3R:18215450-18215570 1.0000 120 chrX:18900167-18900287 1.0000 120 chrX:8536758-8536878 1.0000 120 chr2L:4224276-4224396 1.0000 120 chrX:10786708-10786828 1.0000 120 chr3R:26952310-26952430 1.0000 120 chr3L:1609746-1609866 1.0000 120 chr2R:9847797-9847917 1.0000 120 chr3R:21161816-21161936 1.0000 120 chr3R:10688986-10689106 1.0000 120 chr3R:26121909-26122029 1.0000 120 chr3L:9836816-9836936 1.0000 120 chr3R:16441640-16441760 1.0000 120 chr3R:27557141-27557261 1.0000 120 chr2R:6781879-6781999 1.0000 120 chr2L:9908717-9908837 1.0000 120 chrX:9193741-9193861 1.0000 120 chr2R:22197240-22197360 1.0000 120 chrX:8720341-8720461 1.0000 120 chr3L:8440841-8440961 1.0000 120 chr2R:14136845-14136965 1.0000 120 chr3L:2913447-2913567 1.0000 120 chr3L:3770970-3771090 1.0000 120 chr3L:11785406-11785526 1.0000 120 chrX:16105838-16105958 1.0000 120 chr3R:25661704-25661824 1.0000 120 chr3R:31772041-31772161 1.0000 120 chr3L:1618236-1618356 1.0000 120 chr3L:3970543-3970663 1.0000 120 chr3R:15139658-15139778 1.0000 120 chrX:5689518-5689638 1.0000 120 chr3L:10866753-10866873 1.0000 120 chr2L:19141047-19141167 1.0000 120 chr3L:13922411-13922531 1.0000 120 chr2L:1628298-1628418 1.0000 120 chr2R:18158165-18158285 1.0000 120 chrX:10387813-10387933 1.0000 120 chr3R:28676991-28677111 1.0000 120 chr2L:7494364-7494484 1.0000 120 chr3R:27677223-27677343 1.0000 120 chr2R:18536744-18536864 1.0000 120 chr2R:20319516-20319636 1.0000 120 chr3R:8744374-8744494 1.0000 120 chr2L:11203755-11203875 1.0000 120 chr2L:12467874-12467994 1.0000 120 chr3R:13644828-13644948 1.0000 120 chr2L:7702595-7702715 1.0000 120 chr3R:30325580-30325700 1.0000 120 chr2R:23977279-23977399 1.0000 120 chr3R:25168375-25168495 1.0000 120 chrX:17330411-17330531 1.0000 120 chr2L:1150675-1150795 1.0000 120 chrX:1517653-1517773 1.0000 120 chrX:7015103-7015223 1.0000 120 chr2L:10488657-10488777 1.0000 120 chrX:20511599-20511719 1.0000 120 chr3L:22065814-22065934 1.0000 120 chr2R:13968160-13968280 1.0000 120 chr3R:7092087-7092207 1.0000 120 chr2R:12259419-12259539 1.0000 120 chr3R:8563984-8564104 1.0000 120 chr2L:2883322-2883442 1.0000 120 chr2L:10767929-10768049 1.0000 120 chr3L:22277363-22277483 1.0000 120 chrX:5901980-5902100 1.0000 120 chr2R:21060533-21060653 1.0000 120 chrX:1478415-1478535 1.0000 120 chr2L:15629904-15630024 1.0000 120 chrX:12631447-12631567 1.0000 120 chr3R:17540062-17540182 1.0000 120 chr3L:4379068-4379188 1.0000 120 chrX:1859023-1859143 1.0000 120 chr2L:10856579-10856699 1.0000 120 chr2L:8528514-8528634 1.0000 120 chrX:11451146-11451266 1.0000 120 chr3R:9038815-9038935 1.0000 120 chr2L:13219895-13220015 1.0000 120 chr3R:16355530-16355650 1.0000 120 chr3L:16582871-16582991 1.0000 120 chr3L:9435498-9435618 1.0000 120 chr3R:27153422-27153542 1.0000 120 chrX:1370127-1370247 1.0000 120 chrX:10629057-10629177 1.0000 120 chr3R:23028668-23028788 1.0000 120 chr2L:6907920-6908040 1.0000 120 chr2R:19127999-19128119 1.0000 120 chr3L:11252531-11252651 1.0000 120 chr3R:18274547-18274667 1.0000 120 chr2R:7815115-7815235 1.0000 120 chr3L:8526281-8526401 1.0000 120 chr3R:23760568-23760688 1.0000 120 chrX:17887243-17887363 1.0000 120 chr3L:9847551-9847671 1.0000 120 chr2L:3042232-3042352 1.0000 120 chrX:10086308-10086428 1.0000 120 chr3R:10696495-10696615 1.0000 120 chrX:8892752-8892872 1.0000 120 chr3L:20395369-20395489 1.0000 120 chr2R:8914068-8914188 1.0000 120 chr2L:283263-283383 1.0000 120 chr3R:29869215-29869335 1.0000 120 chr2R:23970058-23970178 1.0000 120 chr3R:21671786-21671906 1.0000 120 chr2R:15381280-15381400 1.0000 120 chrX:12454509-12454629 1.0000 120 chr2R:9544889-9545009 1.0000 120 chr3L:19586102-19586222 1.0000 120 chr3R:30058150-30058270 1.0000 120 chrX:6621665-6621785 1.0000 120 chr3L:628490-628610 1.0000 120 chr3R:6818684-6818804 1.0000 120 chrX:11108316-11108436 1.0000 120 chr2R:14906622-14906742 1.0000 120 chr3R:25054647-25054767 1.0000 120 chr2R:11809534-11809654 1.0000 120 chr3R:18242128-18242248 1.0000 120 chr3R:29859936-29860056 1.0000 120 chr3R:26121152-26121272 1.0000 120 chr2L:8381792-8381912 1.0000 120 chr2R:11204330-11204450 1.0000 120 chr3R:21850293-21850413 1.0000 120 chr3R:5588313-5588433 1.0000 120 chr2L:16703874-16703994 1.0000 120 chr3R:17540270-17540390 1.0000 120 chr2R:24402751-24402871 1.0000 120 chr2L:7871981-7872101 1.0000 120 chr3L:3090852-3090972 1.0000 120 chr3R:4387586-4387706 1.0000 120 chr2L:7494565-7494685 1.0000 120 chr2L:4394019-4394139 1.0000 120 chr2R:18829729-18829849 1.0000 120 chr3R:12350611-12350731 1.0000 120 chr2L:4847339-4847459 1.0000 120 chr3R:11967442-11967562 1.0000 120 chr2R:12772751-12772871 1.0000 120 chr3R:10882235-10882355 1.0000 120 chr3R:13030659-13030779 1.0000 120 chr2L:11199218-11199338 1.0000 120 chr3R:23942980-23943100 1.0000 120 chr3L:16165800-16165920 1.0000 120 chrX:15739037-15739157 1.0000 120 chr3R:25027655-25027775 1.0000 120 chr3L:20771092-20771212 1.0000 120 chr3L:15968037-15968157 1.0000 120 chrX:5286019-5286139 1.0000 120 chr3L:7861152-7861272 1.0000 120 chr2R:11359196-11359316 1.0000 120 chr3L:9066224-9066344 1.0000 120 chr3L:5789884-5790004 1.0000 120 chr3L:6264589-6264709 1.0000 120 chr3R:20593000-20593120 1.0000 120 chr2L:10426604-10426724 1.0000 120 chr2L:12542105-12542225 1.0000 120 chr3R:15472875-15472995 1.0000 120 chr2L:8982674-8982794 1.0000 120 chr3R:9220194-9220314 1.0000 120 chr3R:9370554-9370674 1.0000 120 chrX:5892220-5892340 1.0000 120 chr3L:12803847-12803967 1.0000 120 chrX:11454494-11454614 1.0000 120 chr3L:554779-554899 1.0000 120 chrX:16782318-16782438 1.0000 120 chr2L:21370999-21371119 1.0000 120 chr2R:23574926-23575046 1.0000 120 chr2L:7033463-7033583 1.0000 120 chr3R:5759014-5759134 1.0000 120 chr2L:1629690-1629810 1.0000 120 chr3L:21196714-21196834 1.0000 120 chr2R:18326638-18326758 1.0000 120 chr3L:8672642-8672762 1.0000 120 chrX:2158986-2159106 1.0000 120 chrX:13391268-13391388 1.0000 120 chr2L:73192-73312 1.0000 120 chr2L:2883121-2883241 1.0000 120 chr2L:4440998-4441118 1.0000 120 chr2L:21215073-21215193 1.0000 120 chr3R:15250678-15250798 1.0000 120 chr2L:10698141-10698261 1.0000 120 chrX:19865830-19865950 1.0000 120 chr2R:24657118-24657238 1.0000 120 chrX:12463065-12463185 1.0000 120 chr2L:5543171-5543291 1.0000 120 chrX:1236721-1236841 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_lilli/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/lilli.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.323 C 0.18 G 0.178 T 0.319 Background letter frequencies (from file dataset with add-one prior applied): A 0.323 C 0.18 G 0.178 T 0.319 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGGGCTG MEME-1 width = 8 sites = 5 llr = 63 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::::a:: probability G ::aaa::a matrix T ::::::a: bits 2.5 * **** * 2.2 * **** * 2.0 * **** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGGGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2883121-2883241 6 3.35e-06 TGTGC CAGGGCTG CAGAGTCCGT chr2L:7033463-7033583 60 3.35e-06 AAATATTTGG CAGGGCTG CAATAGCAAC chr2R:8914068-8914188 48 3.35e-06 GCTCGGTGTT CAGGGCTG TCAGGTGTCA chr3R:18215450-18215570 10 3.35e-06 ACGTAAGAC CAGGGCTG CAACTACGAA chrX:8900266-8900386 14 3.35e-06 CGGCTGTCCG CAGGGCTG CCAGATCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2883121-2883241 3.4e-06 5_[+1]_107 chr2L:7033463-7033583 3.4e-06 59_[+1]_53 chr2R:8914068-8914188 3.4e-06 47_[+1]_65 chr3R:18215450-18215570 3.4e-06 9_[+1]_103 chrX:8900266-8900386 3.4e-06 13_[+1]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGGGCTG width=8 seqs=5 chr2L:2883121-2883241 ( 6) CAGGGCTG 1 chr2L:7033463-7033583 ( 60) CAGGGCTG 1 chr2R:8914068-8914188 ( 48) CAGGGCTG 1 chr3R:18215450-18215570 ( 10) CAGGGCTG 1 chrX:8900266-8900386 ( 14) CAGGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 4.0e+002 -897 247 -897 -897 163 -897 -897 -897 -897 -897 248 -897 -897 -897 248 -897 -897 -897 248 -897 -897 247 -897 -897 -897 -897 -897 165 -897 -897 248 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.0e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-1 regular expression -------------------------------------------------------------------------------- CAGGGCTG -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCCCT MEME-2 width = 8 sites = 5 llr = 60 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C 2a::aaa: probability G 8::a:::: matrix T :::::::a bits 2.5 * **** 2.2 * **** 2.0 * **** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (17.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCCCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1236721-1236841 23 3.43e-06 ATGTACACCT GCAGCCCT GATTCGTTTC chr3L:5789884-5790004 101 3.43e-06 aacCAAGTTA GCAGCCCT TCAAAGCAAA chr2R:18158165-18158285 53 3.43e-06 CTATCGGCTA GCAGCCCT GACTATGTAA chr3R:14741466-14741586 92 3.43e-06 TTTAATCAAT GCAGCCCT CTTACCCTAT chr3L:16582871-16582991 78 6.89e-06 AATAATATTC CCAGCCCT GTGGTAACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1236721-1236841 3.4e-06 22_[+2]_90 chr3L:5789884-5790004 3.4e-06 100_[+2]_12 chr2R:18158165-18158285 3.4e-06 52_[+2]_60 chr3R:14741466-14741586 3.4e-06 91_[+2]_21 chr3L:16582871-16582991 6.9e-06 77_[+2]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCCCT width=8 seqs=5 chrX:1236721-1236841 ( 23) GCAGCCCT 1 chr3L:5789884-5790004 ( 101) GCAGCCCT 1 chr2R:18158165-18158285 ( 53) GCAGCCCT 1 chr3R:14741466-14741586 ( 92) GCAGCCCT 1 chr3L:16582871-16582991 ( 78) CCAGCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 5.6e+003 -897 15 216 -897 -897 247 -897 -897 163 -897 -897 -897 -897 -897 248 -897 -897 247 -897 -897 -897 247 -897 -897 -897 247 -897 -897 -897 -897 -897 165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.6e+003 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCT MEME-2 regular expression -------------------------------------------------------------------------------- [GC]CAGCCCT -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF WGGCGCCA MEME-3 width = 8 sites = 15 llr = 147 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 31::::27 pos.-specific C :::91a8: probability G :9a19::: matrix T 7::::::3 bits 2.5 * * 2.2 **** 2.0 **** 1.7 ***** Relative 1.5 ****** Entropy 1.2 ****** (14.1 bits) 1.0 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:73192-73312 52 3.39e-06 ATATACACAA TGGCGCCA CTGTTGTTTT chr3L:6264589-6264709 14 3.39e-06 CAAGATTTAC TGGCGCCA TCTAGGGCCT chr2R:13968160-13968280 59 3.39e-06 TTCCGGCAGA TGGCGCCA GGTGGTTATC chr3R:21850293-21850413 103 6.82e-06 GGGTAACGTT AGGCGCCA CTTCTGCTAC chr2R:7815115-7815235 32 1.02e-05 TCTCTAAAAT TGGCGCCT AATTCTATTA chr3L:9435498-9435618 32 1.02e-05 GGCGAGTCAG TGGCGCCT AGCCTAGCAA chr3R:13644828-13644948 99 1.02e-05 ATTAATATTT TGGCGCCT TGGCAACTCC chr3R:5588313-5588433 83 1.36e-05 AGACGGCGAT AGGCGCCT TATGTTGTTT chrX:2158986-2159106 53 1.96e-05 TCGAAACGTG TGGCGCAA AATTAAGCGA chr2L:283263-283383 42 2.58e-05 ATCGATATGA TAGCGCCA CTTGACGTTT chr3R:13030659-13030779 61 3.87e-05 GACTTCGATA AGGCGCAA ATTAAACTAG chr3L:3090852-3090972 64 3.87e-05 GTCGCAAGAC TGGGGCCA TAAAAAATAA chr2R:20319516-20319636 53 3.87e-05 AACGCGGAAC AGGCGCAA CTCAATGTTT chr2R:24629579-24629699 111 3.87e-05 TCTGCGCCTC TGGCCCCA AA chr3L:224247-224367 85 5.10e-05 CTTCCGCGTT AAGCGCCA GAAAATGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:73192-73312 3.4e-06 51_[+3]_61 chr3L:6264589-6264709 3.4e-06 13_[+3]_99 chr2R:13968160-13968280 3.4e-06 58_[+3]_54 chr3R:21850293-21850413 6.8e-06 102_[+3]_10 chr2R:7815115-7815235 1e-05 31_[+3]_81 chr3L:9435498-9435618 1e-05 31_[+3]_81 chr3R:13644828-13644948 1e-05 98_[+3]_14 chr3R:5588313-5588433 1.4e-05 82_[+3]_30 chrX:2158986-2159106 2e-05 52_[+3]_60 chr2L:283263-283383 2.6e-05 41_[+3]_71 chr3R:13030659-13030779 3.9e-05 60_[+3]_52 chr3L:3090852-3090972 3.9e-05 63_[+3]_49 chr2R:20319516-20319636 3.9e-05 52_[+3]_60 chr2R:24629579-24629699 3.9e-05 110_[+3]_2 chr3L:224247-224367 5.1e-05 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGCGCCA width=8 seqs=15 chr2L:73192-73312 ( 52) TGGCGCCA 1 chr3L:6264589-6264709 ( 14) TGGCGCCA 1 chr2R:13968160-13968280 ( 59) TGGCGCCA 1 chr3R:21850293-21850413 ( 103) AGGCGCCA 1 chr2R:7815115-7815235 ( 32) TGGCGCCT 1 chr3L:9435498-9435618 ( 32) TGGCGCCT 1 chr3R:13644828-13644948 ( 99) TGGCGCCT 1 chr3R:5588313-5588433 ( 83) AGGCGCCT 1 chrX:2158986-2159106 ( 53) TGGCGCAA 1 chr2L:283263-283383 ( 42) TAGCGCCA 1 chr3R:13030659-13030779 ( 61) AGGCGCAA 1 chr3L:3090852-3090972 ( 64) TGGGGCCA 1 chr2R:20319516-20319636 ( 53) AGGCGCAA 1 chr2R:24629579-24629699 ( 111) TGGCCCCA 1 chr3L:224247-224367 ( 85) AAGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 3.2e+003 5 -1055 -1055 106 -127 -1055 228 -1055 -1055 -1055 249 -1055 -1055 237 -142 -1055 -1055 -143 239 -1055 -1055 247 -1055 -1055 -69 215 -1055 -1055 118 -1055 -1055 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.2e+003 0.333333 0.000000 0.000000 0.666667 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.733333 0.000000 0.000000 0.266667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGCGCCA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]GGCGC[CA][AT] -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGGCG MEME-4 width = 8 sites = 2 llr = 26 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a::a: probability G ::a:aa:a matrix T :a:::::: bits 2.5 * ****** 2.2 * ****** 2.0 * ****** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20771092-20771212 35 1.87e-06 GTTATGTGAA CTGCGGCG TGACTCACGA chr2L:7494565-7494685 76 1.87e-06 AATGTAGAAG CTGCGGCG GAATTTACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20771092-20771212 1.9e-06 34_[+4]_78 chr2L:7494565-7494685 1.9e-06 75_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGGCG width=8 seqs=2 chr3L:20771092-20771212 ( 35) CTGCGGCG 1 chr2L:7494565-7494685 ( 76) CTGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.4e+004 -765 247 -765 -765 -765 -765 -765 165 -765 -765 248 -765 -765 247 -765 -765 -765 -765 248 -765 -765 -765 248 -765 -765 247 -765 -765 -765 -765 248 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGCG MEME-4 regular expression -------------------------------------------------------------------------------- CTGCGGCG -------------------------------------------------------------------------------- Time 26.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCRTTGC MEME-5 width = 8 sites = 5 llr = 58 E-value = 4.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C a:a::::a probability G :a:6::a: matrix T ::::aa:: bits 2.5 *** ** 2.2 *** ** 2.0 *** ** 1.7 *** **** Relative 1.5 *** **** Entropy 1.2 ******** (16.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGTTGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21196714-21196834 61 3.35e-06 TGTTTACTTA CGCGTTGC CAAACACCAG chr2R:16202936-16203056 95 3.35e-06 AGGGGATGGT CGCGTTGC CAACCAAAGA chr2L:3713102-3713222 49 3.35e-06 ATCAGCTGTT CGCGTTGC CAACCTGTGA chr3L:10866753-10866873 27 9.42e-06 TCCTGAATGT CGCATTGC CGTCTGGGCC chrX:18900167-18900287 94 9.42e-06 GTGTAGTGAG CGCATTGC CACGTGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21196714-21196834 3.3e-06 60_[+5]_52 chr2R:16202936-16203056 3.3e-06 94_[+5]_18 chr2L:3713102-3713222 3.3e-06 48_[+5]_64 chr3L:10866753-10866873 9.4e-06 26_[+5]_86 chrX:18900167-18900287 9.4e-06 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCRTTGC width=8 seqs=5 chr3L:21196714-21196834 ( 61) CGCGTTGC 1 chr2R:16202936-16203056 ( 95) CGCGTTGC 1 chr2L:3713102-3713222 ( 49) CGCGTTGC 1 chr3L:10866753-10866873 ( 27) CGCATTGC 1 chrX:18900167-18900287 ( 94) CGCATTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 4.1e+004 -897 247 -897 -897 -897 -897 248 -897 -897 247 -897 -897 31 -897 175 -897 -897 -897 -897 165 -897 -897 -897 165 -897 -897 248 -897 -897 247 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCRTTGC MEME-5 regular expression -------------------------------------------------------------------------------- CGC[GA]TTGC -------------------------------------------------------------------------------- Time 32.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30174320-30174440 6.65e-01 120 chr2L:14616352-14616472 8.75e-03 120 chr2R:20944099-20944219 3.72e-01 120 chr2L:2944668-2944788 4.17e-01 120 chr3L:22669407-22669527 8.92e-02 120 chr3L:224247-224367 4.10e-03 84_[+3(5.10e-05)]_28 chr2L:3713102-3713222 1.52e-02 48_[+5(3.35e-06)]_64 chr3L:14977291-14977411 1.78e-01 120 chr3L:9838654-9838774 1.06e-01 120 chr2L:1043786-1043906 3.12e-01 120 chr3R:18918484-18918604 7.92e-02 120 chrX:18899967-18900087 7.16e-01 120 chr2R:12173455-12173575 9.47e-02 120 chr2R:10265459-10265579 8.68e-01 120 chrX:7703086-7703206 1.00e+00 120 chr2R:16202936-16203056 8.28e-03 94_[+5(3.35e-06)]_18 chrX:15120251-15120371 3.60e-01 120 chr2R:22737987-22738107 2.01e-02 63_[+5(3.31e-05)]_49 chr2L:2873480-2873600 9.61e-01 120 chr2L:5972143-5972263 8.65e-01 120 chr2L:14616552-14616672 2.16e-01 120 chrX:8233343-8233463 2.19e-01 120 chr2L:8738344-8738464 4.42e-01 120 chrX:8141444-8141564 2.59e-01 120 chrX:18494269-18494389 7.62e-01 120 chr3R:7821737-7821857 1.70e-01 120 chrX:14169208-14169328 8.07e-01 120 chr2R:17161028-17161148 7.00e-01 120 chr3L:15565904-15566024 8.87e-02 120 chr3R:23941725-23941845 3.75e-01 120 chr2L:19490271-19490391 9.94e-01 120 chrX:16650568-16650688 8.68e-01 120 chr3L:18898137-18898257 8.35e-01 120 chr3R:18918285-18918405 9.71e-01 120 chrX:13676539-13676659 3.66e-01 120 chr2L:8894391-8894511 1.25e-01 120 chr3R:20574843-20574963 7.49e-02 120 chr3L:6495570-6495690 4.33e-01 120 chr3R:16704403-16704523 9.88e-01 120 chr3R:8524436-8524556 6.31e-03 72_[+4(6.59e-05)]_40 chrX:13333059-13333179 5.23e-01 120 chr2L:16251958-16252078 8.96e-01 120 chr3L:20389152-20389272 4.85e-01 120 chr3R:15292431-15292551 7.62e-01 120 chr2L:3058802-3058922 4.97e-01 120 chrX:8677592-8677712 6.51e-01 120 chr2R:14411682-14411802 9.93e-01 120 chr3R:4654672-4654792 2.50e-01 120 chr2R:24629579-24629699 4.80e-03 110_[+3(3.87e-05)]_2 chr2L:16817743-16817863 7.77e-01 120 chr3L:13929289-13929409 5.07e-01 120 chrX:947612-947732 7.94e-01 120 chr3R:21118919-21119039 7.37e-01 120 chr3L:8177960-8178080 7.06e-01 120 chrX:8900266-8900386 1.90e-03 13_[+1(3.35e-06)]_99 chr3R:9430536-9430656 2.06e-02 120 chr3R:11628571-11628691 6.57e-01 120 chr2R:7987866-7987986 1.58e-01 120 chr3R:14741466-14741586 6.33e-03 91_[+2(3.43e-06)]_21 chrX:6695052-6695172 8.75e-01 120 chr2L:7443086-7443206 3.61e-01 120 chr3R:7500666-7500786 5.53e-01 120 chr3R:30134749-30134869 9.07e-01 120 chr2R:13438089-13438209 7.81e-01 120 chrX:16103574-16103694 4.86e-01 120 chr2L:20881495-20881615 1.73e-01 120 chr2R:23202167-23202287 9.09e-01 120 chr3R:18215450-18215570 6.25e-03 9_[+1(3.35e-06)]_103 chrX:18900167-18900287 1.78e-02 93_[+5(9.42e-06)]_19 chrX:8536758-8536878 7.03e-01 120 chr2L:4224276-4224396 9.56e-02 39_[+5(3.31e-05)]_73 chrX:10786708-10786828 4.38e-01 120 chr3R:26952310-26952430 5.48e-01 120 chr3L:1609746-1609866 1.00e+00 120 chr2R:9847797-9847917 3.05e-01 120 chr3R:21161816-21161936 1.74e-01 120 chr3R:10688986-10689106 9.90e-01 120 chr3R:26121909-26122029 9.60e-01 120 chr3L:9836816-9836936 9.24e-01 120 chr3R:16441640-16441760 5.79e-01 120 chr3R:27557141-27557261 9.05e-01 120 chr2R:6781879-6781999 7.07e-01 120 chr2L:9908717-9908837 1.81e-01 120 chrX:9193741-9193861 9.42e-01 120 chr2R:22197240-22197360 3.04e-02 120 chrX:8720341-8720461 9.30e-01 120 chr3L:8440841-8440961 9.73e-01 120 chr2R:14136845-14136965 9.67e-01 120 chr3L:2913447-2913567 8.27e-01 120 chr3L:3770970-3771090 1.19e-01 120 chr3L:11785406-11785526 2.05e-01 120 chrX:16105838-16105958 2.37e-02 23_[+3(5.10e-05)]_89 chr3R:25661704-25661824 2.26e-02 120 chr3R:31772041-31772161 9.99e-01 120 chr3L:1618236-1618356 1.00e+00 120 chr3L:3970543-3970663 8.60e-01 120 chr3R:15139658-15139778 7.12e-02 120 chrX:5689518-5689638 2.35e-01 120 chr3L:10866753-10866873 2.64e-03 26_[+5(9.42e-06)]_86 chr2L:19141047-19141167 5.88e-01 120 chr3L:13922411-13922531 5.88e-02 120 chr2L:1628298-1628418 9.99e-01 120 chr2R:18158165-18158285 1.40e-02 52_[+2(3.43e-06)]_60 chrX:10387813-10387933 9.07e-01 120 chr3R:28676991-28677111 3.79e-01 120 chr2L:7494364-7494484 8.73e-01 120 chr3R:27677223-27677343 9.99e-01 120 chr2R:18536744-18536864 2.01e-01 120 chr2R:20319516-20319636 4.98e-02 52_[+3(3.87e-05)]_60 chr3R:8744374-8744494 8.98e-01 120 chr2L:11203755-11203875 4.55e-01 120 chr2L:12467874-12467994 8.09e-01 120 chr3R:13644828-13644948 2.42e-02 98_[+3(1.02e-05)]_14 chr2L:7702595-7702715 5.43e-01 120 chr3R:30325580-30325700 9.32e-01 120 chr2R:23977279-23977399 5.58e-01 120 chr3R:25168375-25168495 9.88e-01 120 chrX:17330411-17330531 9.91e-01 120 chr2L:1150675-1150795 1.67e-02 120 chrX:1517653-1517773 6.40e-01 120 chrX:7015103-7015223 6.78e-01 120 chr2L:10488657-10488777 7.83e-01 120 chrX:20511599-20511719 9.70e-01 120 chr3L:22065814-22065934 1.69e-01 120 chr2R:13968160-13968280 3.53e-04 58_[+3(3.39e-06)]_54 chr3R:7092087-7092207 2.82e-02 120 chr2R:12259419-12259539 7.03e-02 120 chr3R:8563984-8564104 4.72e-01 120 chr2L:2883322-2883442 8.84e-01 120 chr2L:10767929-10768049 1.71e-01 120 chr3L:22277363-22277483 4.83e-01 120 chrX:5901980-5902100 9.96e-02 120 chr2R:21060533-21060653 9.16e-01 120 chrX:1478415-1478535 1.88e-01 120 chr2L:15629904-15630024 6.10e-01 120 chrX:12631447-12631567 3.43e-01 120 chr3R:17540062-17540182 5.65e-01 120 chr3L:4379068-4379188 9.11e-01 120 chrX:1859023-1859143 9.78e-01 120 chr2L:10856579-10856699 4.26e-01 120 chr2L:8528514-8528634 7.74e-01 120 chrX:11451146-11451266 9.86e-01 120 chr3R:9038815-9038935 8.13e-01 120 chr2L:13219895-13220015 7.34e-01 120 chr3R:16355530-16355650 1.34e-01 120 chr3L:16582871-16582991 4.11e-02 77_[+2(6.89e-06)]_35 chr3L:9435498-9435618 3.04e-04 31_[+3(1.02e-05)]_81 chr3R:27153422-27153542 1.85e-01 120 chrX:1370127-1370247 7.62e-01 120 chrX:10629057-10629177 9.07e-01 120 chr3R:23028668-23028788 9.22e-01 120 chr2L:6907920-6908040 9.94e-01 120 chr2R:19127999-19128119 5.81e-01 120 chr3L:11252531-11252651 8.46e-01 120 chr3R:18274547-18274667 4.86e-02 120 chr2R:7815115-7815235 4.24e-03 31_[+3(1.02e-05)]_81 chr3L:8526281-8526401 1.24e-01 120 chr3R:23760568-23760688 9.17e-02 120 chrX:17887243-17887363 5.92e-01 120 chr3L:9847551-9847671 3.11e-01 120 chr2L:3042232-3042352 8.37e-01 120 chrX:10086308-10086428 8.56e-01 120 chr3R:10696495-10696615 3.32e-01 120 chrX:8892752-8892872 4.45e-01 120 chr3L:20395369-20395489 5.53e-01 120 chr2R:8914068-8914188 3.34e-03 47_[+1(3.35e-06)]_65 chr2L:283263-283383 9.78e-02 41_[+3(2.58e-05)]_71 chr3R:29869215-29869335 2.23e-01 120 chr2R:23970058-23970178 8.04e-01 120 chr3R:21671786-21671906 8.18e-01 120 chr2R:15381280-15381400 9.33e-01 120 chrX:12454509-12454629 9.80e-01 120 chr2R:9544889-9545009 1.44e-01 120 chr3L:19586102-19586222 9.82e-01 120 chr3R:30058150-30058270 4.58e-01 120 chrX:6621665-6621785 8.30e-01 120 chr3L:628490-628610 6.72e-01 120 chr3R:6818684-6818804 8.43e-01 120 chrX:11108316-11108436 2.08e-01 120 chr2R:14906622-14906742 9.39e-01 120 chr3R:25054647-25054767 4.19e-01 120 chr2R:11809534-11809654 1.87e-01 120 chr3R:18242128-18242248 9.47e-01 120 chr3R:29859936-29860056 6.49e-01 120 chr3R:26121152-26121272 9.99e-01 120 chr2L:8381792-8381912 9.95e-01 120 chr2R:11204330-11204450 9.14e-01 120 chr3R:21850293-21850413 1.30e-02 102_[+3(6.82e-06)]_10 chr3R:5588313-5588433 3.34e-02 82_[+3(1.36e-05)]_30 chr2L:16703874-16703994 3.25e-01 120 chr3R:17540270-17540390 9.99e-01 120 chr2R:24402751-24402871 9.49e-01 120 chr2L:7871981-7872101 9.98e-01 120 chr3L:3090852-3090972 1.04e-02 63_[+3(3.87e-05)]_49 chr3R:4387586-4387706 6.60e-01 120 chr2L:7494565-7494685 1.35e-02 75_[+4(1.87e-06)]_37 chr2L:4394019-4394139 5.16e-01 120 chr2R:18829729-18829849 6.83e-01 120 chr3R:12350611-12350731 3.59e-01 120 chr2L:4847339-4847459 5.69e-01 120 chr3R:11967442-11967562 9.73e-01 120 chr2R:12772751-12772871 5.81e-01 120 chr3R:10882235-10882355 9.84e-01 120 chr3R:13030659-13030779 1.89e-01 60_[+3(3.87e-05)]_52 chr2L:11199218-11199338 9.56e-01 120 chr3R:23942980-23943100 2.32e-01 120 chr3L:16165800-16165920 9.46e-01 120 chrX:15739037-15739157 9.93e-01 120 chr3R:25027655-25027775 9.44e-01 120 chr3L:20771092-20771212 1.08e-02 34_[+4(1.87e-06)]_78 chr3L:15968037-15968157 1.14e-01 97_[+4(6.59e-05)]_15 chrX:5286019-5286139 6.70e-01 120 chr3L:7861152-7861272 9.56e-01 120 chr2R:11359196-11359316 4.05e-01 120 chr3L:9066224-9066344 1.00e+00 120 chr3L:5789884-5790004 6.85e-02 100_[+2(3.43e-06)]_12 chr3L:6264589-6264709 6.61e-03 13_[+3(3.39e-06)]_99 chr3R:20593000-20593120 1.03e-02 84_[+2(3.38e-05)]_28 chr2L:10426604-10426724 7.61e-01 120 chr2L:12542105-12542225 1.00e+00 120 chr3R:15472875-15472995 1.00e+00 120 chr2L:8982674-8982794 9.80e-01 120 chr3R:9220194-9220314 6.86e-01 120 chr3R:9370554-9370674 3.36e-01 120 chrX:5892220-5892340 9.48e-01 120 chr3L:12803847-12803967 9.99e-01 120 chrX:11454494-11454614 6.14e-01 120 chr3L:554779-554899 2.52e-01 120 chrX:16782318-16782438 5.50e-03 47_[+5(2.37e-05)]_65 chr2L:21370999-21371119 4.51e-01 120 chr2R:23574926-23575046 5.84e-01 120 chr2L:7033463-7033583 4.11e-03 59_[+1(3.35e-06)]_53 chr3R:5759014-5759134 8.20e-01 120 chr2L:1629690-1629810 4.26e-01 120 chr3L:21196714-21196834 8.22e-04 60_[+5(3.35e-06)]_52 chr2R:18326638-18326758 9.75e-01 120 chr3L:8672642-8672762 9.86e-01 120 chrX:2158986-2159106 4.19e-03 52_[+3(1.96e-05)]_60 chrX:13391268-13391388 1.46e-01 120 chr2L:73192-73312 7.11e-03 51_[+3(3.39e-06)]_61 chr2L:2883121-2883241 1.66e-03 5_[+1(3.35e-06)]_107 chr2L:4440998-4441118 7.66e-01 120 chr2L:21215073-21215193 2.00e-01 120 chr3R:15250678-15250798 6.40e-03 120 chr2L:10698141-10698261 9.85e-01 120 chrX:19865830-19865950 9.40e-01 120 chr2R:24657118-24657238 9.71e-01 120 chrX:12463065-12463185 3.16e-01 120 chr2L:5543171-5543291 8.68e-01 120 chrX:1236721-1236841 2.29e-03 22_[+2(3.43e-06)]_90 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************