******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/lbe.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:16015-16135 1.0000 120 chrM:19293-19413 1.0000 120 chrM:15407-15527 1.0000 120 chrM:17224-17344 1.0000 120 chrM:6728-6848 1.0000 120 chr3R:30454479-30454599 1.0000 120 chr3R:17404267-17404387 1.0000 120 chr3R:31878415-31878535 1.0000 120 chr2R:17405103-17405223 1.0000 120 chrM:9814-9934 1.0000 120 chrM:10018-10138 1.0000 120 chrM:6118-6238 1.0000 120 chr2R:23972210-23972330 1.0000 120 chrX:15572082-15572202 1.0000 120 chrX:15804245-15804365 1.0000 120 chrX:6343514-6343634 1.0000 120 chr3R:12723877-12723997 1.0000 120 chrM:4670-4790 1.0000 120 chrX:4435379-4435499 1.0000 120 chrM:6939-7059 1.0000 120 chrX:11705366-11705486 1.0000 120 chr3L:8121693-8121813 1.0000 120 chr2R:6114732-6114852 1.0000 120 chrX:18777396-18777516 1.0000 120 chr3L:14973406-14973526 1.0000 120 chr2L:10222625-10222745 1.0000 120 chr3L:2865670-2865790 1.0000 120 chr2R:12923722-12923842 1.0000 120 chr3R:8306238-8306358 1.0000 120 chr2L:18455633-18455753 1.0000 120 chr2L:8220713-8220833 1.0000 120 chrM:219-339 1.0000 120 chrX:10728200-10728320 1.0000 120 chr3L:2838298-2838418 1.0000 120 chr2R:9846523-9846643 1.0000 120 chr2R:10076266-10076386 1.0000 120 chr3R:29506710-29506830 1.0000 120 chr3L:8158797-8158917 1.0000 120 chr2R:23983048-23983168 1.0000 120 chr2R:6144354-6144474 1.0000 120 chrX:9062821-9062941 1.0000 120 chr2R:16720070-16720190 1.0000 120 chr3R:30689757-30689877 1.0000 120 chr3L:3252008-3252128 1.0000 120 chr3L:12745274-12745394 1.0000 120 chr2L:12055936-12056056 1.0000 120 chrM:419-539 1.0000 120 chrX:15813388-15813508 1.0000 120 chr3R:31599695-31599815 1.0000 120 chrX:3407452-3407572 1.0000 120 chr2R:8143481-8143601 1.0000 120 chr2R:12336304-12336424 1.0000 120 chr3R:17685019-17685139 1.0000 120 chr3L:11623683-11623803 1.0000 120 chr3L:17579205-17579325 1.0000 120 chr3R:24278857-24278977 1.0000 120 chrM:11311-11431 1.0000 120 chr3R:28861468-28861588 1.0000 120 chr2L:10264244-10264364 1.0000 120 chr3R:27593267-27593387 1.0000 120 chr2L:8400292-8400412 1.0000 120 chr2L:22134137-22134257 1.0000 120 chrX:3147178-3147298 1.0000 120 chr3L:3778482-3778602 1.0000 120 chr2R:18157565-18157685 1.0000 120 chr3R:14731597-14731717 1.0000 120 chr2R:18857896-18858016 1.0000 120 chr3R:5281187-5281307 1.0000 120 chr2R:12917537-12917657 1.0000 120 chr2R:18135348-18135468 1.0000 120 chr2R:9843652-9843772 1.0000 120 chr2R:9409564-9409684 1.0000 120 chr2R:23979644-23979764 1.0000 120 chrX:3841097-3841217 1.0000 120 chrX:1566092-1566212 1.0000 120 chr3R:21452300-21452420 1.0000 120 chr3R:30206013-30206133 1.0000 120 chrX:5026805-5026925 1.0000 120 chr3L:8518811-8518931 1.0000 120 chr2L:12483038-12483158 1.0000 120 chr2L:8989051-8989171 1.0000 120 chrM:12988-13108 1.0000 120 chrX:3437646-3437766 1.0000 120 chr3L:12490169-12490289 1.0000 120 chr2R:21687664-21687784 1.0000 120 chr2L:10972320-10972440 1.0000 120 chr3L:9448009-9448129 1.0000 120 chr3L:15532415-15532535 1.0000 120 chr3L:14615323-14615443 1.0000 120 chr3R:25493417-25493537 1.0000 120 chr3R:24603798-24603918 1.0000 120 chr3L:18007511-18007631 1.0000 120 chr2L:1989396-1989516 1.0000 120 chrX:6279699-6279819 1.0000 120 chr2R:6143620-6143740 1.0000 120 chr2R:22657522-22657642 1.0000 120 chr2L:7437259-7437379 1.0000 120 chr2L:452251-452371 1.0000 120 chr3L:5633718-5633838 1.0000 120 chr3R:16332195-16332315 1.0000 120 chr2L:13837589-13837709 1.0000 120 chr3R:7967963-7968083 1.0000 120 chr4:1122976-1123096 1.0000 120 chr3L:21972521-21972641 1.0000 120 chr2R:24986823-24986943 1.0000 120 chrX:1577294-1577414 1.0000 120 chr2L:700939-701059 1.0000 120 chr2R:7779644-7779764 1.0000 120 chr3L:10743069-10743189 1.0000 120 chr3R:19151934-19152054 1.0000 120 chr3L:13923949-13924069 1.0000 120 chr2L:8198844-8198964 1.0000 120 chr3R:26058183-26058303 1.0000 120 chr3L:12790044-12790164 1.0000 120 chr2L:8004301-8004421 1.0000 120 chr2L:10265228-10265348 1.0000 120 chr2R:6242004-6242124 1.0000 120 chr3L:1321304-1321424 1.0000 120 chr2R:19229805-19229925 1.0000 120 chr3R:21059708-21059828 1.0000 120 chr3L:178544-178664 1.0000 120 chr3L:16121868-16121988 1.0000 120 chr2R:6141543-6141663 1.0000 120 chr3R:19879600-19879720 1.0000 120 chr3R:10045410-10045530 1.0000 120 chrM:13187-13307 1.0000 120 chr3L:17925290-17925410 1.0000 120 chrM:14521-14641 1.0000 120 chr2R:19396051-19396171 1.0000 120 chr2R:6125510-6125630 1.0000 120 chr3R:25304005-25304125 1.0000 120 chr2R:22729310-22729430 1.0000 120 chr2L:11395784-11395904 1.0000 120 chr3L:1964261-1964381 1.0000 120 chr3L:17563791-17563911 1.0000 120 chr3L:12016313-12016433 1.0000 120 chr3L:17965338-17965458 1.0000 120 chr3R:25205786-25205906 1.0000 120 chr2R:24983264-24983384 1.0000 120 chr3L:16139282-16139402 1.0000 120 chr2R:9915178-9915298 1.0000 120 chrX:2642569-2642689 1.0000 120 chrM:12117-12237 1.0000 120 chr2R:17452215-17452335 1.0000 120 chr2R:14433365-14433485 1.0000 120 chr2R:12015474-12015594 1.0000 120 chr2R:5782004-5782124 1.0000 120 chr3R:21115992-21116112 1.0000 120 chr2R:7791504-7791624 1.0000 120 chr2R:21553793-21553913 1.0000 120 chrX:3950007-3950127 1.0000 120 chr2L:10479884-10480004 1.0000 120 chr3L:4286907-4287027 1.0000 120 chr3R:23061360-23061480 1.0000 120 chr3R:20765921-20766041 1.0000 120 chr2L:5295198-5295318 1.0000 120 chrX:11136990-11137110 1.0000 120 chr3L:20730341-20730461 1.0000 120 chrX:5689486-5689606 1.0000 120 chrX:17551045-17551165 1.0000 120 chr3R:11666124-11666244 1.0000 120 chr2R:23659109-23659229 1.0000 120 chrM:2923-3043 1.0000 120 chr3R:17809191-17809311 1.0000 120 chr3R:11154062-11154182 1.0000 120 chr3R:19603097-19603217 1.0000 120 chr2R:11206757-11206877 1.0000 120 chrX:6021594-6021714 1.0000 120 chrX:5025363-5025483 1.0000 120 chr2R:22658587-22658707 1.0000 120 chr3R:19165781-19165901 1.0000 120 chr3R:15291740-15291860 1.0000 120 chr3L:2387926-2388046 1.0000 120 chr2R:6501131-6501251 1.0000 120 chr3L:6550624-6550744 1.0000 120 chrM:3742-3862 1.0000 120 chr3L:739435-739555 1.0000 120 chr2R:19414743-19414863 1.0000 120 chr2L:5972106-5972226 1.0000 120 chr2R:23942379-23942499 1.0000 120 chr2L:10341528-10341648 1.0000 120 chr2L:15745551-15745671 1.0000 120 chr3R:14481791-14481911 1.0000 120 chr3R:22044073-22044193 1.0000 120 chr3R:21875128-21875248 1.0000 120 chrX:15834688-15834808 1.0000 120 chr3R:29835480-29835600 1.0000 120 chr2R:13042049-13042169 1.0000 120 chr2L:2889168-2889288 1.0000 120 chr3R:25056221-25056341 1.0000 120 chr3L:9381674-9381794 1.0000 120 chr2L:4197376-4197496 1.0000 120 chr2R:6693128-6693248 1.0000 120 chrM:2720-2840 1.0000 120 chr3R:21829654-21829774 1.0000 120 chr2R:6675812-6675932 1.0000 120 chr2R:21522495-21522615 1.0000 120 chrM:7477-7597 1.0000 120 chr2R:9145136-9145256 1.0000 120 chr2R:18256970-18257090 1.0000 120 chr3R:16154404-16154524 1.0000 120 chr3L:15101811-15101931 1.0000 120 chr2R:10432573-10432693 1.0000 120 chrX:17879372-17879492 1.0000 120 chr3R:19643097-19643217 1.0000 120 chr2L:10204073-10204193 1.0000 120 chr3L:549086-549206 1.0000 120 chr2R:10600513-10600633 1.0000 120 chr2L:1911379-1911499 1.0000 120 chr2L:3787077-3787197 1.0000 120 chrX:16425253-16425373 1.0000 120 chr3L:16038063-16038183 1.0000 120 chr2L:6723355-6723475 1.0000 120 chr3R:10826898-10827018 1.0000 120 chr2L:6068966-6069086 1.0000 120 chr3R:29116256-29116376 1.0000 120 chr3L:7792309-7792429 1.0000 120 chr2L:2357410-2357530 1.0000 120 chr3R:9941067-9941187 1.0000 120 chr2R:17535865-17535985 1.0000 120 chr3R:13976314-13976434 1.0000 120 chr3R:14286456-14286576 1.0000 120 chrX:12580304-12580424 1.0000 120 chr2R:6023265-6023385 1.0000 120 chr2L:8308310-8308430 1.0000 120 chrX:6981734-6981854 1.0000 120 chr2R:6632369-6632489 1.0000 120 chr2R:10110853-10110973 1.0000 120 chr3R:23222003-23222123 1.0000 120 chr3L:3420465-3420585 1.0000 120 chr2L:6644744-6644864 1.0000 120 chr3R:12439514-12439634 1.0000 120 chr3R:8142243-8142363 1.0000 120 chr3L:19557844-19557964 1.0000 120 chr2R:15842757-15842877 1.0000 120 chr2L:10231343-10231463 1.0000 120 chr2L:19526471-19526591 1.0000 120 chr3L:15524044-15524164 1.0000 120 chr3L:9424582-9424702 1.0000 120 chr3R:9954744-9954864 1.0000 120 chr3R:18923327-18923447 1.0000 120 chrX:10927285-10927405 1.0000 120 chr3R:17119150-17119270 1.0000 120 chr2L:2755299-2755419 1.0000 120 chrX:2658444-2658564 1.0000 120 chr3L:758682-758802 1.0000 120 chr2L:13640589-13640709 1.0000 120 chr2L:5249885-5250005 1.0000 120 chr2L:9705996-9706116 1.0000 120 chr2L:20311079-20311199 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_lbe/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/lbe.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.185 G 0.18 T 0.317 Background letter frequencies (from file dataset with add-one prior applied): A 0.318 C 0.185 G 0.18 T 0.317 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGCYGYT MEME-1 width = 8 sites = 83 llr = 618 E-value = 5.0e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 29::2:22 pos.-specific C 8::a3:52 probability G ::a:1a1: matrix T :1::5:25 bits 2.5 ** * 2.2 ** * 2.0 ** * 1.7 ** * Relative 1.5 * ** * Entropy 1.2 **** * (10.7 bits) 1.0 **** * 0.7 **** * 0.5 **** * 0.2 ******** 0.0 -------- Multilevel CAGCTGCT consensus A C TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9705996-9706116 2 1.04e-05 A CAGCCGCT CTCTTCTCAG chr3R:13976314-13976434 94 1.04e-05 CACCTTTTAC CAGCTGCT TTTGTTGGAT chr3R:19165781-19165901 86 1.04e-05 CTTTTGTTTT CAGCTGCT CGCGCTCAAT chr2R:14433365-14433485 30 1.04e-05 ACAGCAACGG CAGCTGCT CCaaaaacaa chr3L:12790044-12790164 84 1.04e-05 AGACTCTCTT CAGCCGCT CTATTTCAAC chr2L:8198844-8198964 53 1.04e-05 AGTCAACCGA CAGCCGCT TGACAGCACT chr3R:30454479-30454599 55 1.04e-05 CATTCATTCA CAGCTGCT CGAGTTTCTC chr3L:17925290-17925410 14 1.64e-05 TCATTCCACC CAGCTGCC GTAAACAAGA chr3L:9448009-9448129 61 1.64e-05 AACACAGTTT CAGCCGCC CATAAAAACA chrX:10927285-10927405 70 2.69e-05 acaacaacag cagctgca gcaacaacag chrX:5025363-5025483 33 2.69e-05 GGACCTGCAA CAGCTGCA CTCGGCGAAA chrX:10728200-10728320 38 2.69e-05 AACCAACATT CAGCCGCA TATTTGTTTA chr2L:2755299-2755419 14 3.34e-05 GACGTCGCTG CAGCAGCT GTCGTTCGGA chr3R:19643097-19643217 83 3.34e-05 TCTTATCACG CAGCAGCT GACTGCAGTG chr2L:2357410-2357530 8 5.12e-05 GCCATAT CAGCTGTT CATAAATTAA chr2R:19414743-19414863 97 5.12e-05 TCCCGATTTC CAGCTGTT TCCGTGGTGT chrX:11136990-11137110 103 5.12e-05 TGCTGGCAAT CAGCCGTT GTGTTTGAAA chr3R:10045410-10045530 89 5.12e-05 AAAGCATGGC CAGCTGTT ATATGTTTTC chr3L:1321304-1321424 26 5.12e-05 AGATCGGCCT CAGCTGTT GACGCTTTTT chr2L:8004301-8004421 16 5.12e-05 ACTAAATGAA CAGCTGTT CCGTTAAACG chr3L:12490169-12490289 79 5.12e-05 GCTCCAGAAA CAGCTGTT GATTGAAAAC chr3L:11623683-11623803 39 5.12e-05 CGATTCCACT CAGCTGTT AACCGCTTAT chrX:15572082-15572202 37 5.12e-05 TTATTTCAAT CAGCTGTT TACCAGTGTT chr3R:17404267-17404387 82 5.12e-05 TTTGTTCTCT CAGCTGTT CAAAGACGTT chr2L:13640589-13640709 25 8.29e-05 TAAATGCAAA CAGCTGAT TGCAGGCAAC chr3R:9954744-9954864 27 8.29e-05 AACGATCGCT CAGCGGCT ATCTCTTTCT chr2R:10110853-10110973 36 8.29e-05 CAGTGATAAC CAGCTGAT CAACAGCTGA chr2R:17535865-17535985 14 8.29e-05 GATGGAACCC CAGCCGAT GATTACTCGA chr2R:23659109-23659229 11 8.29e-05 TATTTAAAAA CAGCGGCT AATCATACAG chr3R:26058183-26058303 101 8.29e-05 ATCTCGTGAA CAGCTGAT TGAAGAATTC chr3L:8158797-8158917 110 8.29e-05 ATATGTTTGC CAGCTGAT TGC chr3L:19557844-19557964 84 1.05e-04 AAAAAACAGC CAGCAGCC AGCAAAAATG chr3R:12439514-12439634 5 1.05e-04 ATTA AAGCCGCT GTAATTAAAA chr3L:2387926-2388046 27 1.05e-04 TACAATCCAC AAGCTGCT TTGCAGCTAC chr3R:30206013-30206133 8 1.05e-04 TTTCGTT CAGCAGCC TTTGCCAAAT chrX:15813388-15813508 15 1.05e-04 ATATTGTACA AAGCTGCT CATACAAAAT chrM:6118-6238 93 1.05e-04 GATCAAGTAA AAGCTGCT AACTTTTTTC chrX:17879372-17879492 4 1.21e-04 GTA CAGCTGCG GTTAGCACTC chrX:6981734-6981854 68 1.27e-04 CGCAGCGAAA CAGCTGGC TATGAAACTT chr3L:7792309-7792429 79 1.27e-04 TTTAAAGTTT CAGCCGGC TAAAGTGTGT chr2R:10432573-10432693 58 1.27e-04 CTAACAGCAA CAGCTGGC TTACCAGTGC chrX:3950007-3950127 50 1.27e-04 TTGATGCCGG CAGCTGGC Gtcgctctct chr3L:15101811-15101931 105 1.74e-04 TTtgctgttg ctgctgct gccgctgt chrX:2642569-2642689 88 1.74e-04 ctcatttact ctgccgct ctcttgtgct chr3L:17563791-17563911 97 1.74e-04 ATTGGCgctg ctgctgct gctgttgctg chr2R:19396051-19396171 40 1.74e-04 TTTACCATCT CAGCCGTA CGTATTTATT chrX:9062821-9062941 73 1.74e-04 AACTTCTAAA CTGCTGCT TCAACAGCCA chrX:5689486-5689606 40 1.95e-04 AATGGTGTGC AAGCCGCC CATGAATAAA chr2R:22729310-22729430 40 1.95e-04 GACGGAGCGT AAGCCGCC CAGAGATTGC chr3L:16038063-16038183 97 2.16e-04 TTTTGTCACT CAGCTGAA TGCAGTTGAA chrM:2923-3043 43 2.16e-04 AATACTCCAC CAGCTGAA CATAGATATT chrX:1566092-1566212 63 2.16e-04 GCTGACAAGG CAGCGGCA GCGAAGCCTC chr2R:23983048-23983168 9 2.16e-04 CGGGCACA CAGCCGAA CTGTTCAGAT chr3L:8121693-8121813 30 2.28e-04 CGGAAGATTT CAGCAGTT TAAATATTGG chrX:1577294-1577414 50 2.52e-04 acaacaacaa aaGCTGCA CTAAAAGCCT chr3L:15532415-15532535 44 2.52e-04 AATCCACTTG AAGCCGCA GAGAGCGATC chr2R:18157565-18157685 12 2.52e-04 CGTTCGTGGA AAGCCGCA GGAACCACCA chr3L:3252008-3252128 77 2.52e-04 TCTATTTCCA AAGCTGCA TAGAGTATTT chr2R:6114732-6114852 31 2.52e-04 AATACAAGTA AAGCCGCA AAATGTGTAC chrX:3841097-3841217 67 2.69e-04 cacacaggca caGCAGAT CTCGGCGACA chr2R:8143481-8143601 2 2.91e-04 A AAGCAGCT ACATACGTAT chr3R:5281187-5281307 21 3.48e-04 CAGCAAAAGG CAGCAGCG AAGAGTAGTT chr3R:28861468-28861588 62 3.48e-04 AGCCAGAGCG AAGCCGTT TAGGCCTCGT chr2R:6675812-6675932 8 3.79e-04 GCATCAC AAGCCGGT TATATCGATA chr2R:11206757-11206877 94 3.79e-04 CCTTATTAGC CAGCCGTG CTGATAACAA chr3R:25493417-25493537 13 3.79e-04 TAACAAAAAT CAGCTGTG CGTAGGTGTG chr2R:12917537-12917657 4 3.79e-04 ACA AAGCTGGT TGGCATTGTG chr3R:23061360-23061480 95 4.29e-04 TTTTTATTGC AAGCCGAT TGCAATCGAT chr3L:10743069-10743189 2 4.29e-04 T AAGCTGAT TTTAAACGAA chr2L:18455633-18455753 8 4.29e-04 ATTTCTG CAGCAGAC GCCGCCGTTG chr3R:19879600-19879720 104 4.63e-04 GGTAGCTGTG CAGCGGTC ACACAGCAA chr2L:6068966-6069086 107 4.95e-04 ATTTTCAGGC CAGCAGGA GTCAGA chr3L:549086-549206 104 4.95e-04 ACCATATTTT CTGCTGTT CTCTTCTGC chr3R:16154404-16154524 7 4.95e-04 AACTTG CTGCTGTT CTTTTTGCTG chr3R:21059708-21059828 66 4.95e-04 TTTGCGCAGT CAGCGGGC AAAAGCAATT chr3L:9424582-9424702 14 5.49e-04 GTTAGTGAAT CAGCAGAA GTTGTAAAAA chr3R:21452300-21452420 108 5.49e-04 GCAAGGCAAC CAGCAGAA GGCGA chrX:17551045-17551165 45 5.87e-04 AGAGAAATTA CTGCTGAT TTCTCATGTT chr3L:20730341-20730461 43 5.87e-04 GATAGAAAAG AAGCCGGC TGCCGGCCAA chr3R:19151934-19152054 25 6.23e-04 TGGCTCAAAA AAGCAGCA TTAATTAGCA chr2L:19526471-19526591 75 7.59e-04 CTTTAATATA AAGCTGAA CAAATAACAT chr3L:3420465-3420585 100 7.59e-04 GGCCGACGCT CTGCCGGC CTCGTGGGCA chr2R:9915178-9915298 89 8.32e-04 CCTTTTCGCG CTGCTGTA TAAAGTGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9705996-9706116 1e-05 1_[+1]_111 chr3R:13976314-13976434 1e-05 93_[+1]_19 chr3R:19165781-19165901 1e-05 85_[+1]_27 chr2R:14433365-14433485 1e-05 29_[+1]_83 chr3L:12790044-12790164 1e-05 83_[+1]_29 chr2L:8198844-8198964 1e-05 52_[+1]_60 chr3R:30454479-30454599 1e-05 54_[+1]_58 chr3L:17925290-17925410 1.6e-05 13_[+1]_99 chr3L:9448009-9448129 1.6e-05 60_[+1]_52 chrX:10927285-10927405 2.7e-05 69_[+1]_43 chrX:5025363-5025483 2.7e-05 32_[+1]_80 chrX:10728200-10728320 2.7e-05 37_[+1]_75 chr2L:2755299-2755419 3.3e-05 13_[+1]_99 chr3R:19643097-19643217 3.3e-05 82_[+1]_30 chr2L:2357410-2357530 5.1e-05 7_[+1]_105 chr2R:19414743-19414863 5.1e-05 96_[+1]_16 chrX:11136990-11137110 5.1e-05 102_[+1]_10 chr3R:10045410-10045530 5.1e-05 88_[+1]_24 chr3L:1321304-1321424 5.1e-05 25_[+1]_87 chr2L:8004301-8004421 5.1e-05 15_[+1]_97 chr3L:12490169-12490289 5.1e-05 78_[+1]_34 chr3L:11623683-11623803 5.1e-05 38_[+1]_74 chrX:15572082-15572202 5.1e-05 36_[+1]_76 chr3R:17404267-17404387 5.1e-05 81_[+1]_31 chr2L:13640589-13640709 8.3e-05 24_[+1]_88 chr3R:9954744-9954864 8.3e-05 26_[+1]_86 chr2R:10110853-10110973 8.3e-05 35_[+1]_77 chr2R:17535865-17535985 8.3e-05 13_[+1]_99 chr2R:23659109-23659229 8.3e-05 10_[+1]_102 chr3R:26058183-26058303 8.3e-05 100_[+1]_12 chr3L:8158797-8158917 8.3e-05 109_[+1]_3 chr3L:19557844-19557964 0.0001 83_[+1]_29 chr3R:12439514-12439634 0.0001 4_[+1]_108 chr3L:2387926-2388046 0.0001 26_[+1]_86 chr3R:30206013-30206133 0.0001 7_[+1]_105 chrX:15813388-15813508 0.0001 14_[+1]_98 chrM:6118-6238 0.0001 92_[+1]_20 chrX:17879372-17879492 0.00012 3_[+1]_109 chrX:6981734-6981854 0.00013 67_[+1]_45 chr3L:7792309-7792429 0.00013 78_[+1]_34 chr2R:10432573-10432693 0.00013 57_[+1]_55 chrX:3950007-3950127 0.00013 49_[+1]_63 chr3L:15101811-15101931 0.00017 104_[+1]_8 chrX:2642569-2642689 0.00017 87_[+1]_25 chr3L:17563791-17563911 0.00017 96_[+1]_16 chr2R:19396051-19396171 0.00017 39_[+1]_73 chrX:9062821-9062941 0.00017 72_[+1]_40 chrX:5689486-5689606 0.00019 39_[+1]_73 chr2R:22729310-22729430 0.00019 39_[+1]_73 chr3L:16038063-16038183 0.00022 96_[+1]_16 chrM:2923-3043 0.00022 42_[+1]_70 chrX:1566092-1566212 0.00022 62_[+1]_50 chr2R:23983048-23983168 0.00022 8_[+1]_104 chr3L:8121693-8121813 0.00023 29_[+1]_83 chrX:1577294-1577414 0.00025 49_[+1]_63 chr3L:15532415-15532535 0.00025 43_[+1]_69 chr2R:18157565-18157685 0.00025 11_[+1]_101 chr3L:3252008-3252128 0.00025 76_[+1]_36 chr2R:6114732-6114852 0.00025 30_[+1]_82 chrX:3841097-3841217 0.00027 66_[+1]_46 chr2R:8143481-8143601 0.00029 1_[+1]_111 chr3R:5281187-5281307 0.00035 20_[+1]_92 chr3R:28861468-28861588 0.00035 61_[+1]_51 chr2R:6675812-6675932 0.00038 7_[+1]_105 chr2R:11206757-11206877 0.00038 93_[+1]_19 chr3R:25493417-25493537 0.00038 12_[+1]_100 chr2R:12917537-12917657 0.00038 3_[+1]_109 chr3R:23061360-23061480 0.00043 94_[+1]_18 chr3L:10743069-10743189 0.00043 1_[+1]_111 chr2L:18455633-18455753 0.00043 7_[+1]_105 chr3R:19879600-19879720 0.00046 103_[+1]_9 chr2L:6068966-6069086 0.0005 106_[+1]_6 chr3L:549086-549206 0.0005 103_[+1]_9 chr3R:16154404-16154524 0.0005 6_[+1]_106 chr3R:21059708-21059828 0.0005 65_[+1]_47 chr3L:9424582-9424702 0.00055 13_[+1]_99 chr3R:21452300-21452420 0.00055 107_[+1]_5 chrX:17551045-17551165 0.00059 44_[+1]_68 chr3L:20730341-20730461 0.00059 42_[+1]_70 chr3R:19151934-19152054 0.00062 24_[+1]_88 chr2L:19526471-19526591 0.00076 74_[+1]_38 chr3L:3420465-3420585 0.00076 99_[+1]_13 chr2R:9915178-9915298 0.00083 88_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCYGYT width=8 seqs=83 chr2L:9705996-9706116 ( 2) CAGCCGCT 1 chr3R:13976314-13976434 ( 94) CAGCTGCT 1 chr3R:19165781-19165901 ( 86) CAGCTGCT 1 chr2R:14433365-14433485 ( 30) CAGCTGCT 1 chr3L:12790044-12790164 ( 84) CAGCCGCT 1 chr2L:8198844-8198964 ( 53) CAGCCGCT 1 chr3R:30454479-30454599 ( 55) CAGCTGCT 1 chr3L:17925290-17925410 ( 14) CAGCTGCC 1 chr3L:9448009-9448129 ( 61) CAGCCGCC 1 chrX:10927285-10927405 ( 70) CAGCTGCA 1 chrX:5025363-5025483 ( 33) CAGCTGCA 1 chrX:10728200-10728320 ( 38) CAGCCGCA 1 chr2L:2755299-2755419 ( 14) CAGCAGCT 1 chr3R:19643097-19643217 ( 83) CAGCAGCT 1 chr2L:2357410-2357530 ( 8) CAGCTGTT 1 chr2R:19414743-19414863 ( 97) CAGCTGTT 1 chrX:11136990-11137110 ( 103) CAGCCGTT 1 chr3R:10045410-10045530 ( 89) CAGCTGTT 1 chr3L:1321304-1321424 ( 26) CAGCTGTT 1 chr2L:8004301-8004421 ( 16) CAGCTGTT 1 chr3L:12490169-12490289 ( 79) CAGCTGTT 1 chr3L:11623683-11623803 ( 39) CAGCTGTT 1 chrX:15572082-15572202 ( 37) CAGCTGTT 1 chr3R:17404267-17404387 ( 82) CAGCTGTT 1 chr2L:13640589-13640709 ( 25) CAGCTGAT 1 chr3R:9954744-9954864 ( 27) CAGCGGCT 1 chr2R:10110853-10110973 ( 36) CAGCTGAT 1 chr2R:17535865-17535985 ( 14) CAGCCGAT 1 chr2R:23659109-23659229 ( 11) CAGCGGCT 1 chr3R:26058183-26058303 ( 101) CAGCTGAT 1 chr3L:8158797-8158917 ( 110) CAGCTGAT 1 chr3L:19557844-19557964 ( 84) CAGCAGCC 1 chr3R:12439514-12439634 ( 5) AAGCCGCT 1 chr3L:2387926-2388046 ( 27) AAGCTGCT 1 chr3R:30206013-30206133 ( 8) CAGCAGCC 1 chrX:15813388-15813508 ( 15) AAGCTGCT 1 chrM:6118-6238 ( 93) AAGCTGCT 1 chrX:17879372-17879492 ( 4) CAGCTGCG 1 chrX:6981734-6981854 ( 68) CAGCTGGC 1 chr3L:7792309-7792429 ( 79) CAGCCGGC 1 chr2R:10432573-10432693 ( 58) CAGCTGGC 1 chrX:3950007-3950127 ( 50) CAGCTGGC 1 chr3L:15101811-15101931 ( 105) CTGCTGCT 1 chrX:2642569-2642689 ( 88) CTGCCGCT 1 chr3L:17563791-17563911 ( 97) CTGCTGCT 1 chr2R:19396051-19396171 ( 40) CAGCCGTA 1 chrX:9062821-9062941 ( 73) CTGCTGCT 1 chrX:5689486-5689606 ( 40) AAGCCGCC 1 chr2R:22729310-22729430 ( 40) AAGCCGCC 1 chr3L:16038063-16038183 ( 97) CAGCTGAA 1 chrM:2923-3043 ( 43) CAGCTGAA 1 chrX:1566092-1566212 ( 63) CAGCGGCA 1 chr2R:23983048-23983168 ( 9) CAGCCGAA 1 chr3L:8121693-8121813 ( 30) CAGCAGTT 1 chrX:1577294-1577414 ( 50) AAGCTGCA 1 chr3L:15532415-15532535 ( 44) AAGCCGCA 1 chr2R:18157565-18157685 ( 12) AAGCCGCA 1 chr3L:3252008-3252128 ( 77) AAGCTGCA 1 chr2R:6114732-6114852 ( 31) AAGCCGCA 1 chrX:3841097-3841217 ( 67) CAGCAGAT 1 chr2R:8143481-8143601 ( 2) AAGCAGCT 1 chr3R:5281187-5281307 ( 21) CAGCAGCG 1 chr3R:28861468-28861588 ( 62) AAGCCGTT 1 chr2R:6675812-6675932 ( 8) AAGCCGGT 1 chr2R:11206757-11206877 ( 94) CAGCCGTG 1 chr3R:25493417-25493537 ( 13) CAGCTGTG 1 chr2R:12917537-12917657 ( 4) AAGCTGGT 1 chr3R:23061360-23061480 ( 95) AAGCCGAT 1 chr3L:10743069-10743189 ( 2) AAGCTGAT 1 chr2L:18455633-18455753 ( 8) CAGCAGAC 1 chr3R:19879600-19879720 ( 104) CAGCGGTC 1 chr2L:6068966-6069086 ( 107) CAGCAGGA 1 chr3L:549086-549206 ( 104) CTGCTGTT 1 chr3R:16154404-16154524 ( 7) CTGCTGTT 1 chr3R:21059708-21059828 ( 66) CAGCGGGC 1 chr3L:9424582-9424702 ( 14) CAGCAGAA 1 chr3R:21452300-21452420 ( 108) CAGCAGAA 1 chrX:17551045-17551165 ( 45) CTGCTGAT 1 chr3L:20730341-20730461 ( 43) AAGCCGGC 1 chr3R:19151934-19152054 ( 25) AAGCAGCA 1 chr2L:19526471-19526591 ( 75) AAGCTGAA 1 chr3L:3420465-3420585 ( 100) CTGCCGGC 1 chr2R:9915178-9915298 ( 89) CTGCTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.38464 E= 5.0e-011 -40 204 -1302 -1302 149 -1302 -1302 -155 -1302 -1302 247 -1302 -1302 244 -1302 -1302 -102 58 -158 67 -1302 -1302 247 -1302 -72 131 -58 -47 -47 -3 -190 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 5.0e-011 0.240964 0.759036 0.000000 0.000000 0.891566 0.000000 0.000000 0.108434 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.156627 0.277108 0.060241 0.506024 0.000000 0.000000 1.000000 0.000000 0.192771 0.457831 0.120482 0.228916 0.228916 0.180723 0.048193 0.542169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCYGYT MEME-1 regular expression -------------------------------------------------------------------------------- [CA]AGC[TC]G[CT][TA] -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGSGA MEME-2 width = 8 sites = 26 llr = 248 E-value = 5.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:8:::8 pos.-specific C :::225:: probability G a:a:83a2 matrix T :::::2:: bits 2.5 * * 2.2 * * * 2.0 * * * 1.7 *** * * Relative 1.5 *** * * Entropy 1.2 ***** ** (13.8 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGCGA consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2755299-2755419 43 6.25e-06 GGCTGTGAGT GAGAGCGA GAGATTCATT chr2L:4197376-4197496 83 6.25e-06 acgagagagc gagagcga AATGCAGTTT chrX:15834688-15834808 65 6.25e-06 gagagagagt gagagcga atcaagagag chr3L:20730341-20730461 113 6.25e-06 CGGGCCAAAA GAGAGCGA chr3L:12790044-12790164 50 6.25e-06 CAAGTGTGAA GAGAGCGA TTCGAAAGCT chr3L:15532415-15532535 52 6.25e-06 TGAAGCCGCA GAGAGCGA TCGAATCCGG chr2L:12483038-12483158 74 6.25e-06 TGTGTGCTCA GAGAGCGA TAAAAATCGA chrX:15813388-15813508 81 6.25e-06 atgagagcgg gagagcga gaatagagtg chrX:15804245-15804365 70 6.25e-06 GAGCGAGGAA GAGAGCGA GAGAGTTTCG chrX:3407452-3407572 113 1.23e-05 ATATCTGAGC GAGAGGGA chr3R:17119150-17119270 25 1.95e-05 AGAGGGGCGA GAGAGCGG CAAACAAAAA chr2R:22729310-22729430 24 1.95e-05 TCCGATCGCA GAGCGCGA CGGAGCGTAA chr2R:6632369-6632489 109 3.02e-05 agcagcaaga gagagtga gatt chr2R:24983264-24983384 89 3.02e-05 ATGCAAAAGC GAGAGTGA GCAAGCGGGA chr2R:23979644-23979764 78 3.02e-05 TACCAAGTGC GAGAGTGA GGGAGCGACA chr2L:12055936-12056056 82 3.02e-05 AACGCagtga gagagtga gagcagcaaa chr3L:1321304-1321424 108 3.66e-05 ATGGTTATCC GAGACCGA GACCC chr2L:13640589-13640709 64 4.36e-05 CCGAATGTTG GAGCGGGA CAACAATATA chr2R:19229805-19229925 53 4.36e-05 GCAGCTTTGC GAGCGGGA GCGAAAAGAG chr2R:9409564-9409684 108 4.36e-05 TAAGGGATAA GAGAGGGG CGGGA chr3R:18923327-18923447 89 5.19e-05 AAGCGCCTAA GAGACGGA AGCACACATA chr2R:6125510-6125630 94 5.19e-05 GGAAGAAGCA GAGACGGA ACGCGTATTT chr3L:17563791-17563911 50 6.42e-05 AGGAGGAAAA GAGAGTGG AGCACTCTCG chr2R:24986823-24986943 54 6.42e-05 CAACGTGAAA GAGAGTGG CAGAGAACGC chr3R:14481791-14481911 95 9.10e-05 TACCGGTTAA CAGAGCGA GCTAACAGCA chr3R:24603798-24603918 36 9.81e-05 AGGGAACGAG GAGCCGGA GGAGCCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2755299-2755419 6.2e-06 42_[+2]_70 chr2L:4197376-4197496 6.2e-06 82_[+2]_30 chrX:15834688-15834808 6.2e-06 64_[+2]_48 chr3L:20730341-20730461 6.2e-06 112_[+2] chr3L:12790044-12790164 6.2e-06 49_[+2]_63 chr3L:15532415-15532535 6.2e-06 51_[+2]_61 chr2L:12483038-12483158 6.2e-06 73_[+2]_39 chrX:15813388-15813508 6.2e-06 80_[+2]_32 chrX:15804245-15804365 6.2e-06 69_[+2]_43 chrX:3407452-3407572 1.2e-05 112_[+2] chr3R:17119150-17119270 1.9e-05 24_[+2]_88 chr2R:22729310-22729430 1.9e-05 23_[+2]_89 chr2R:6632369-6632489 3e-05 108_[+2]_4 chr2R:24983264-24983384 3e-05 88_[+2]_24 chr2R:23979644-23979764 3e-05 77_[+2]_35 chr2L:12055936-12056056 3e-05 81_[+2]_31 chr3L:1321304-1321424 3.7e-05 107_[+2]_5 chr2L:13640589-13640709 4.4e-05 63_[+2]_49 chr2R:19229805-19229925 4.4e-05 52_[+2]_60 chr2R:9409564-9409684 4.4e-05 107_[+2]_5 chr3R:18923327-18923447 5.2e-05 88_[+2]_24 chr2R:6125510-6125630 5.2e-05 93_[+2]_19 chr3L:17563791-17563911 6.4e-05 49_[+2]_63 chr2R:24986823-24986943 6.4e-05 53_[+2]_59 chr3R:14481791-14481911 9.1e-05 94_[+2]_18 chr3R:24603798-24603918 9.8e-05 35_[+2]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGSGA width=8 seqs=26 chr2L:2755299-2755419 ( 43) GAGAGCGA 1 chr2L:4197376-4197496 ( 83) GAGAGCGA 1 chrX:15834688-15834808 ( 65) GAGAGCGA 1 chr3L:20730341-20730461 ( 113) GAGAGCGA 1 chr3L:12790044-12790164 ( 50) GAGAGCGA 1 chr3L:15532415-15532535 ( 52) GAGAGCGA 1 chr2L:12483038-12483158 ( 74) GAGAGCGA 1 chrX:15813388-15813508 ( 81) GAGAGCGA 1 chrX:15804245-15804365 ( 70) GAGAGCGA 1 chrX:3407452-3407572 ( 113) GAGAGGGA 1 chr3R:17119150-17119270 ( 25) GAGAGCGG 1 chr2R:22729310-22729430 ( 24) GAGCGCGA 1 chr2R:6632369-6632489 ( 109) GAGAGTGA 1 chr2R:24983264-24983384 ( 89) GAGAGTGA 1 chr2R:23979644-23979764 ( 78) GAGAGTGA 1 chr2L:12055936-12056056 ( 82) GAGAGTGA 1 chr3L:1321304-1321424 ( 108) GAGACCGA 1 chr2L:13640589-13640709 ( 64) GAGCGGGA 1 chr2R:19229805-19229925 ( 53) GAGCGGGA 1 chr2R:9409564-9409684 ( 108) GAGAGGGG 1 chr3R:18923327-18923447 ( 89) GAGACGGA 1 chr2R:6125510-6125630 ( 94) GAGACGGA 1 chr3L:17563791-17563911 ( 50) GAGAGTGG 1 chr2R:24986823-24986943 ( 54) GAGAGTGG 1 chr3R:14481791-14481911 ( 95) CAGAGCGA 1 chr3R:24603798-24603918 ( 36) GAGCCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 5.0e-005 -1134 -226 242 -1134 165 -1134 -1134 -1134 -1134 -1134 247 -1134 141 -26 -1134 -1134 -1134 -26 223 -1134 -1134 144 58 -46 -1134 -1134 247 -1134 141 -1134 -23 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 5.0e-005 0.000000 0.038462 0.961538 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 0.500000 0.269231 0.230769 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.153846 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGSGA MEME-2 regular expression -------------------------------------------------------------------------------- GAGAG[CGT]GA -------------------------------------------------------------------------------- Time 13.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCTC MEME-3 width = 8 sites = 38 llr = 337 E-value = 2.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:8:a:8 probability G 3:213::2 matrix T 7:827:a: bits 2.5 * * 2.2 * * 2.0 * * 1.7 * *** Relative 1.5 * *** Entropy 1.2 * * *** (12.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus G G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2755299-2755419 104 1.18e-05 ATTCAGATGc tctctctc tggcgctct chr3R:14286456-14286576 107 1.18e-05 GCTATTTCGT TCTCTCTC TCGCGC chr3R:21875128-21875248 99 1.18e-05 TATATAGCCT TCTCTCTC GCTTCTTAGC chr3R:15291740-15291860 46 1.18e-05 TCCCAACGGC TCTCTCTC TTTTAGCTGT chrX:2642569-2642689 52 1.18e-05 GAATATtctc tctctctc tctctgtctc chr3L:17563791-17563911 8 1.18e-05 ctctctc tctctctc tctctTTTCC chr3R:7967963-7968083 103 1.18e-05 CTGGTCGCTC TCTCTCTC TCTTCCGTTC chr3L:12490169-12490289 13 1.18e-05 attctctctt tctctctc AGCAAAGTGC chr2L:22134137-22134257 104 1.18e-05 TTTAAACGGA TCTCTCTC GTGCCTCTT chr3R:28861468-28861588 9 1.18e-05 tctctctc tctctctc tcCCTATCGC chrX:2658444-2658564 92 1.85e-05 TTGCTCGCCA TCTCGCTC TGAATCCGTG chr3R:18923327-18923447 43 1.85e-05 CTGTTTGTTC TCTCGCTC TGACTTGAAT chr3R:10826898-10827018 96 1.85e-05 CTCGGAAGAC TCTCGCTC TGGCTTTCTG chr2L:2889168-2889288 54 1.85e-05 GCGATAATTT TCTCGCTC ATCTGGCGTC chrX:6981734-6981854 42 2.53e-05 tccaAGCCGT GCTCTCTC GCTGCGCTCG chr3R:22044073-22044193 102 2.53e-05 CTCTCTCCGG GCTCTCTC CTTTTGTATT chr2R:23659109-23659229 84 2.53e-05 GCGCTCTCCG GCTCTCTC CGCCATTCTT chr3R:19165781-19165901 38 2.91e-05 gttgttgttc gctcgctc gttcgtttgt chr3R:14731597-14731717 4 2.91e-05 AAA GCTCGCTC CGAAGCTTTG chr2L:5295198-5295318 56 3.58e-05 GGCAGAACGA TCGCTCTC TTCTTTGTCC chrX:3950007-3950127 59 3.58e-05 GCAGCTGGCG tcgctctc tttctcactt chr2L:1911379-1911499 27 3.96e-05 AGAAAGCCTT TCGCGCTC TTCAAAAGCT chr3L:2387926-2388046 69 3.96e-05 TCAATTCAGT TCGCGCTC AACTCACAGA chr3L:739435-739555 71 5.71e-05 AATTATAAAA TCTCTCTG GAACGTTTTT chr3L:15532415-15532535 109 6.36e-05 GCGCGCATTA TCTCGCTG CCTT chr3R:17119150-17119270 62 9.04e-05 GAGAGCATTT TCTTTCTC TTTAACATTT chr3R:9954744-9954864 38 9.04e-05 AGCGGCTATC TCTTTCTC TTTTCGCTTC chr2L:10231343-10231463 110 9.04e-05 AATGCTCAGT GCTCTCTG CAT chr3L:12016313-12016433 94 9.04e-05 AGCTAGATTT TCTTTCTC TTAAATTAAC chrX:16425253-16425373 78 1.06e-04 tggctcttgc tcttgctc CGTTCTCGTT chr3R:30206013-30206133 94 1.17e-04 ATGTCGAAAA GCTTTCTC TTTCCAAAAA chr2R:9409564-9409684 10 1.17e-04 ACTTCCTTT GCTTTCTC TTGAAGTTAC chr2L:8400292-8400412 67 1.24e-04 CAATAATTTT TCGCTCTG CTTATCGATT chr2L:3787077-3787197 35 1.61e-04 TGAACTCAGT GCGCTCTG TGTCGCTCAT chr3L:12745274-12745394 57 1.61e-04 TCAGAACTTT TCGTTCTC GAAGCTTGGT chr2R:7779644-7779764 54 1.76e-04 TTTGTTGTTG GCGCGCTG CGATATTATA chr3R:27593267-27593387 7 1.76e-04 TAAAGT TCTGGCTC AAGAAGTCAT chr3R:31878415-31878535 42 1.89e-04 TCCTTTCAAT GCTGTCTC AATATTGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2755299-2755419 1.2e-05 103_[+3]_9 chr3R:14286456-14286576 1.2e-05 106_[+3]_6 chr3R:21875128-21875248 1.2e-05 98_[+3]_14 chr3R:15291740-15291860 1.2e-05 45_[+3]_67 chrX:2642569-2642689 1.2e-05 51_[+3]_61 chr3L:17563791-17563911 1.2e-05 7_[+3]_105 chr3R:7967963-7968083 1.2e-05 102_[+3]_10 chr3L:12490169-12490289 1.2e-05 12_[+3]_100 chr2L:22134137-22134257 1.2e-05 103_[+3]_9 chr3R:28861468-28861588 1.2e-05 8_[+3]_104 chrX:2658444-2658564 1.9e-05 91_[+3]_21 chr3R:18923327-18923447 1.9e-05 42_[+3]_70 chr3R:10826898-10827018 1.9e-05 95_[+3]_17 chr2L:2889168-2889288 1.9e-05 53_[+3]_59 chrX:6981734-6981854 2.5e-05 41_[+3]_71 chr3R:22044073-22044193 2.5e-05 101_[+3]_11 chr2R:23659109-23659229 2.5e-05 83_[+3]_29 chr3R:19165781-19165901 2.9e-05 37_[+3]_75 chr3R:14731597-14731717 2.9e-05 3_[+3]_109 chr2L:5295198-5295318 3.6e-05 55_[+3]_57 chrX:3950007-3950127 3.6e-05 58_[+3]_54 chr2L:1911379-1911499 4e-05 26_[+3]_86 chr3L:2387926-2388046 4e-05 68_[+3]_44 chr3L:739435-739555 5.7e-05 70_[+3]_42 chr3L:15532415-15532535 6.4e-05 108_[+3]_4 chr3R:17119150-17119270 9e-05 61_[+3]_51 chr3R:9954744-9954864 9e-05 37_[+3]_75 chr2L:10231343-10231463 9e-05 109_[+3]_3 chr3L:12016313-12016433 9e-05 93_[+3]_19 chrX:16425253-16425373 0.00011 77_[+3]_35 chr3R:30206013-30206133 0.00012 93_[+3]_19 chr2R:9409564-9409684 0.00012 9_[+3]_103 chr2L:8400292-8400412 0.00012 66_[+3]_46 chr2L:3787077-3787197 0.00016 34_[+3]_78 chr3L:12745274-12745394 0.00016 56_[+3]_56 chr2R:7779644-7779764 0.00018 53_[+3]_59 chr3R:27593267-27593387 0.00018 6_[+3]_106 chr3R:31878415-31878535 0.00019 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCTC width=8 seqs=38 chr2L:2755299-2755419 ( 104) TCTCTCTC 1 chr3R:14286456-14286576 ( 107) TCTCTCTC 1 chr3R:21875128-21875248 ( 99) TCTCTCTC 1 chr3R:15291740-15291860 ( 46) TCTCTCTC 1 chrX:2642569-2642689 ( 52) TCTCTCTC 1 chr3L:17563791-17563911 ( 8) TCTCTCTC 1 chr3R:7967963-7968083 ( 103) TCTCTCTC 1 chr3L:12490169-12490289 ( 13) TCTCTCTC 1 chr2L:22134137-22134257 ( 104) TCTCTCTC 1 chr3R:28861468-28861588 ( 9) TCTCTCTC 1 chrX:2658444-2658564 ( 92) TCTCGCTC 1 chr3R:18923327-18923447 ( 43) TCTCGCTC 1 chr3R:10826898-10827018 ( 96) TCTCGCTC 1 chr2L:2889168-2889288 ( 54) TCTCGCTC 1 chrX:6981734-6981854 ( 42) GCTCTCTC 1 chr3R:22044073-22044193 ( 102) GCTCTCTC 1 chr2R:23659109-23659229 ( 84) GCTCTCTC 1 chr3R:19165781-19165901 ( 38) GCTCGCTC 1 chr3R:14731597-14731717 ( 4) GCTCGCTC 1 chr2L:5295198-5295318 ( 56) TCGCTCTC 1 chrX:3950007-3950127 ( 59) TCGCTCTC 1 chr2L:1911379-1911499 ( 27) TCGCGCTC 1 chr3L:2387926-2388046 ( 69) TCGCGCTC 1 chr3L:739435-739555 ( 71) TCTCTCTG 1 chr3L:15532415-15532535 ( 109) TCTCGCTG 1 chr3R:17119150-17119270 ( 62) TCTTTCTC 1 chr3R:9954744-9954864 ( 38) TCTTTCTC 1 chr2L:10231343-10231463 ( 110) GCTCTCTG 1 chr3L:12016313-12016433 ( 94) TCTTTCTC 1 chrX:16425253-16425373 ( 78) TCTTGCTC 1 chr3R:30206013-30206133 ( 94) GCTTTCTC 1 chr2R:9409564-9409684 ( 10) GCTTTCTC 1 chr2L:8400292-8400412 ( 67) TCGCTCTG 1 chr2L:3787077-3787197 ( 35) GCGCTCTG 1 chr3L:12745274-12745394 ( 57) TCGTTCTC 1 chr2R:7779644-7779764 ( 54) GCGCGCTG 1 chr3R:27593267-27593387 ( 7) TCTGGCTC 1 chr3R:31878415-31878535 ( 42) GCTGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 2.5e-006 -1189 -1189 69 116 -1189 244 -1189 -1189 -1189 -1189 23 131 -1189 205 -177 -78 -1189 -1189 81 111 -1189 244 -1189 -1189 -1189 -1189 -1189 166 -1189 219 -19 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.5e-006 0.000000 0.000000 0.289474 0.710526 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.210526 0.789474 0.000000 0.763158 0.052632 0.184211 0.000000 0.000000 0.315789 0.684211 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.842105 0.157895 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-3 regular expression -------------------------------------------------------------------------------- [TG]C[TG]C[TG]CTC -------------------------------------------------------------------------------- Time 19.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCGCCAA MEME-4 width = 8 sites = 7 llr = 80 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :4a:9a:: probability G a6:a1::: matrix T :::::::: bits 2.5 * ** * 2.2 * ** * 2.0 * ** * 1.7 * ****** Relative 1.5 ******** Entropy 1.2 ******** (16.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29835480-29835600 9 3.73e-06 ATTACTTG GGCGCCAA CAAAACTGGT chr2L:10479884-10480004 96 3.73e-06 ATATCTGCGA GGCGCCAA ATTGAATTGA chr3R:19879600-19879720 17 3.73e-06 ATGGGAACTT GGCGCCAA AACTGCAGCA chr2L:8198844-8198964 29 3.73e-06 TTTGAAATGA GGCGCCAA TTTGTTAGTC chr3R:23222003-23222123 49 7.57e-06 TTTTTTCGGG GCCGCCAA GTGCGGTCTC chr3R:25493417-25493537 85 7.57e-06 TTCAAATTAT GCCGCCAA AAAATCTACA chr2L:6068966-6069086 54 1.49e-05 ATTTACACTT GCCGGCAA ATTGGTTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29835480-29835600 3.7e-06 8_[+4]_104 chr2L:10479884-10480004 3.7e-06 95_[+4]_17 chr3R:19879600-19879720 3.7e-06 16_[+4]_96 chr2L:8198844-8198964 3.7e-06 28_[+4]_84 chr3R:23222003-23222123 7.6e-06 48_[+4]_64 chr3R:25493417-25493537 7.6e-06 84_[+4]_28 chr2L:6068966-6069086 1.5e-05 53_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCGCCAA width=8 seqs=7 chr3R:29835480-29835600 ( 9) GGCGCCAA 1 chr2L:10479884-10480004 ( 96) GGCGCCAA 1 chr3R:19879600-19879720 ( 17) GGCGCCAA 1 chr2L:8198844-8198964 ( 29) GGCGCCAA 1 chr3R:23222003-23222123 ( 49) GCCGCCAA 1 chr3R:25493417-25493537 ( 85) GCCGCCAA 1 chr2L:6068966-6069086 ( 54) GCCGGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 1.0e+004 -945 -945 247 -945 -945 121 167 -945 -945 243 -945 -945 -945 -945 247 -945 -945 221 -33 -945 -945 243 -945 -945 165 -945 -945 -945 165 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGCCAA MEME-4 regular expression -------------------------------------------------------------------------------- G[GC]CGCCAA -------------------------------------------------------------------------------- Time 25.93 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGCCCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 2.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::aaaa probability G :aaa:::: matrix T :::::::: bits 2.5 ******** 2.2 ******** 2.0 ******** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3420465-3420585 55 1.26e-06 ATGAAATGAA CGGGCCCC GATTATAATG chr3L:1321304-1321424 71 1.26e-06 AAGAAAACAG CGGGCCCC AGTGATTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3420465-3420585 1.3e-06 54_[+5]_58 chr3L:1321304-1321424 1.3e-06 70_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGCCCC width=8 seqs=2 chr3L:3420465-3420585 ( 55) CGGGCCCC 1 chr3L:1321304-1321424 ( 71) CGGGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.2e+004 -765 243 -765 -765 -765 -765 247 -765 -765 -765 247 -765 -765 -765 247 -765 -765 243 -765 -765 -765 243 -765 -765 -765 243 -765 -765 -765 243 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCCCC MEME-5 regular expression -------------------------------------------------------------------------------- CGGGCCCC -------------------------------------------------------------------------------- Time 32.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:16015-16135 1.00e+00 120 chrM:19293-19413 1.00e+00 120 chrM:15407-15527 1.00e+00 120 chrM:17224-17344 1.00e+00 120 chrM:6728-6848 8.82e-01 120 chr3R:30454479-30454599 3.33e-02 54_[+1(1.04e-05)]_58 chr3R:17404267-17404387 4.17e-02 81_[+1(5.12e-05)]_31 chr3R:31878415-31878535 9.16e-02 120 chr2R:17405103-17405223 7.74e-01 120 chrM:9814-9934 9.83e-01 120 chrM:10018-10138 1.00e+00 120 chrM:6118-6238 1.47e-01 120 chr2R:23972210-23972330 8.86e-01 120 chrX:15572082-15572202 1.41e-01 36_[+1(5.12e-05)]_76 chrX:15804245-15804365 1.05e-02 57_[+2(6.25e-06)]_4_[+2(6.25e-06)]_\ 43 chrX:6343514-6343634 1.00e+00 120 chr3R:12723877-12723997 5.33e-01 120 chrM:4670-4790 9.73e-01 120 chrX:4435379-4435499 9.70e-01 120 chrM:6939-7059 1.00e+00 120 chrX:11705366-11705486 4.81e-01 120 chr3L:8121693-8121813 3.56e-02 120 chr2R:6114732-6114852 1.02e-01 120 chrX:18777396-18777516 5.80e-01 120 chr3L:14973406-14973526 1.55e-02 120 chr2L:10222625-10222745 4.65e-01 120 chr3L:2865670-2865790 5.20e-01 120 chr2R:12923722-12923842 3.34e-01 120 chr3R:8306238-8306358 6.44e-01 120 chr2L:18455633-18455753 7.46e-02 120 chr2L:8220713-8220833 8.37e-01 120 chrM:219-339 8.77e-01 120 chrX:10728200-10728320 9.67e-03 37_[+1(2.69e-05)]_75 chr3L:2838298-2838418 9.88e-01 120 chr2R:9846523-9846643 4.29e-01 120 chr2R:10076266-10076386 3.25e-02 45_[+5(4.64e-05)]_67 chr3R:29506710-29506830 9.39e-01 120 chr3L:8158797-8158917 2.45e-01 109_[+1(8.29e-05)]_3 chr2R:23983048-23983168 2.20e-02 120 chr2R:6144354-6144474 9.99e-01 120 chrX:9062821-9062941 9.77e-02 120 chr2R:16720070-16720190 8.89e-01 120 chr3R:30689757-30689877 9.16e-01 120 chr3L:3252008-3252128 2.75e-01 120 chr3L:12745274-12745394 6.88e-02 120 chr2L:12055936-12056056 6.16e-02 26_[+2(7.15e-05)]_47_[+2(3.02e-05)]_\ 31 chrM:419-539 9.79e-01 120 chrX:15813388-15813508 7.95e-03 63_[+2(6.25e-06)]_1_[+2(1.95e-05)]_\ [+2(6.25e-06)]_32 chr3R:31599695-31599815 4.60e-01 120 chrX:3407452-3407572 8.89e-02 112_[+2(1.23e-05)] chr2R:8143481-8143601 1.21e-01 120 chr2R:12336304-12336424 8.90e-01 120 chr3R:17685019-17685139 7.68e-01 120 chr3L:11623683-11623803 9.76e-03 38_[+1(5.12e-05)]_74 chr3L:17579205-17579325 9.33e-01 120 chr3R:24278857-24278977 3.71e-01 120 chrM:11311-11431 1.00e+00 120 chr3R:28861468-28861588 6.57e-04 [+3(1.18e-05)]_[+3(1.18e-05)]_10_\ [+3(9.04e-05)]_20_[+2(9.10e-05)]_58 chr2L:10264244-10264364 9.27e-01 120 chr3R:27593267-27593387 1.68e-01 120 chr2L:8400292-8400412 3.31e-02 120 chr2L:22134137-22134257 2.80e-02 103_[+3(1.18e-05)]_9 chrX:3147178-3147298 5.99e-01 120 chr3L:3778482-3778602 8.99e-01 120 chr2R:18157565-18157685 1.10e-02 120 chr3R:14731597-14731717 8.86e-04 3_[+3(2.91e-05)]_91_[+4(6.06e-05)]_\ 10 chr2R:18857896-18858016 3.15e-01 120 chr3R:5281187-5281307 2.46e-02 120 chr2R:12917537-12917657 8.65e-02 120 chr2R:18135348-18135468 5.22e-01 120 chr2R:9843652-9843772 2.78e-01 120 chr2R:9409564-9409684 2.50e-02 107_[+2(4.36e-05)]_5 chr2R:23979644-23979764 1.67e-02 77_[+2(3.02e-05)]_35 chrX:3841097-3841217 3.34e-02 77_[+4(7.34e-05)]_35 chrX:1566092-1566212 5.27e-02 120 chr3R:21452300-21452420 2.97e-01 120 chr3R:30206013-30206133 3.04e-02 120 chrX:5026805-5026925 4.06e-01 120 chr3L:8518811-8518931 3.32e-01 120 chr2L:12483038-12483158 4.80e-02 73_[+2(6.25e-06)]_39 chr2L:8989051-8989171 7.60e-01 120 chrM:12988-13108 1.00e+00 120 chrX:3437646-3437766 9.93e-01 120 chr3L:12490169-12490289 6.85e-04 12_[+3(1.18e-05)]_58_[+1(5.12e-05)]_\ 34 chr2R:21687664-21687784 4.59e-01 120 chr2L:10972320-10972440 9.99e-01 120 chr3L:9448009-9448129 1.27e-03 60_[+1(1.64e-05)]_52 chr3L:15532415-15532535 4.12e-05 51_[+2(6.25e-06)]_49_[+3(6.36e-05)]_\ 4 chr3L:14615323-14615443 7.15e-01 120 chr3R:25493417-25493537 4.75e-03 84_[+4(7.57e-06)]_28 chr3R:24603798-24603918 5.78e-02 35_[+2(9.81e-05)]_77 chr3L:18007511-18007631 6.92e-01 120 chr2L:1989396-1989516 9.88e-01 120 chrX:6279699-6279819 1.16e-01 120 chr2R:6143620-6143740 9.03e-01 120 chr2R:22657522-22657642 1.07e-01 120 chr2L:7437259-7437379 8.62e-01 120 chr2L:452251-452371 7.01e-01 120 chr3L:5633718-5633838 9.22e-01 120 chr3R:16332195-16332315 9.99e-01 120 chr2L:13837589-13837709 1.69e-01 120 chr3R:7967963-7968083 4.47e-02 100_[+3(1.18e-05)]_12 chr4:1122976-1123096 9.94e-01 120 chr3L:21972521-21972641 5.05e-01 120 chr2R:24986823-24986943 2.48e-01 53_[+2(6.42e-05)]_44_[+2(6.42e-05)]_\ 7 chrX:1577294-1577414 2.64e-01 120 chr2L:700939-701059 3.44e-01 120 chr2R:7779644-7779764 1.75e-01 120 chr3L:10743069-10743189 8.90e-02 120 chr3R:19151934-19152054 3.86e-02 70_[+4(7.34e-05)]_42 chr3L:13923949-13924069 7.00e-01 120 chr2L:8198844-8198964 7.51e-05 28_[+4(3.73e-06)]_16_[+1(1.04e-05)]_\ 60 chr3R:26058183-26058303 3.51e-01 100_[+1(8.29e-05)]_12 chr3L:12790044-12790164 3.26e-04 49_[+2(6.25e-06)]_26_[+1(1.04e-05)]_\ 29 chr2L:8004301-8004421 1.35e-01 15_[+1(5.12e-05)]_97 chr2L:10265228-10265348 8.86e-01 120 chr2R:6242004-6242124 6.46e-01 120 chr3L:1321304-1321424 8.05e-07 25_[+1(5.12e-05)]_37_[+5(1.26e-06)]_\ 29_[+2(3.66e-05)]_5 chr2R:19229805-19229925 2.27e-02 52_[+2(4.36e-05)]_60 chr3R:21059708-21059828 8.38e-02 120 chr3L:178544-178664 3.48e-01 120 chr3L:16121868-16121988 1.35e-01 120 chr2R:6141543-6141663 8.11e-01 120 chr3R:19879600-19879720 4.45e-03 16_[+4(3.73e-06)]_96 chr3R:10045410-10045530 2.35e-01 88_[+1(5.12e-05)]_14_[+1(5.12e-05)]_\ 2 chrM:13187-13307 7.47e-01 120 chr3L:17925290-17925410 1.33e-03 13_[+1(1.64e-05)]_69_[+4(1.49e-05)]_\ 22 chrM:14521-14641 1.00e+00 120 chr2R:19396051-19396171 4.14e-01 120 chr2R:6125510-6125630 5.66e-02 93_[+2(5.19e-05)]_19 chr3R:25304005-25304125 5.90e-01 120 chr2R:22729310-22729430 8.27e-04 23_[+2(1.95e-05)]_10_[+4(6.06e-05)]_\ 71 chr2L:11395784-11395904 4.50e-01 120 chr3L:1964261-1964381 1.00e+00 120 chr3L:17563791-17563911 1.76e-04 1_[+3(1.18e-05)]_[+3(1.18e-05)]_32_\ [+2(6.42e-05)]_63 chr3L:12016313-12016433 2.60e-01 93_[+3(9.04e-05)]_19 chr3L:17965338-17965458 1.32e-01 120 chr3R:25205786-25205906 4.04e-02 120 chr2R:24983264-24983384 1.31e-02 88_[+2(3.02e-05)]_24 chr3L:16139282-16139402 6.56e-01 120 chr2R:9915178-9915298 5.68e-02 120 chrX:2642569-2642689 5.47e-03 47_[+3(1.18e-05)]_[+3(1.18e-05)]_57 chrM:12117-12237 1.00e+00 120 chr2R:17452215-17452335 8.64e-01 120 chr2R:14433365-14433485 2.54e-02 29_[+1(1.04e-05)]_83 chr2R:12015474-12015594 7.04e-01 120 chr2R:5782004-5782124 9.98e-01 120 chr3R:21115992-21116112 8.95e-01 120 chr2R:7791504-7791624 9.08e-01 120 chr2R:21553793-21553913 5.56e-01 120 chrX:3950007-3950127 1.68e-03 58_[+3(3.58e-05)]_54 chr2L:10479884-10480004 3.30e-02 95_[+4(3.73e-06)]_17 chr3L:4286907-4287027 3.63e-01 120 chr3R:23061360-23061480 7.42e-01 120 chr3R:20765921-20766041 4.20e-01 120 chr2L:5295198-5295318 1.11e-01 55_[+3(3.58e-05)]_57 chrX:11136990-11137110 2.47e-02 102_[+1(5.12e-05)]_10 chr3L:20730341-20730461 2.03e-04 112_[+2(6.25e-06)] chrX:5689486-5689606 3.41e-02 41_[+4(6.06e-05)]_71 chrX:17551045-17551165 3.58e-01 120 chr3R:11666124-11666244 2.91e-01 120 chr2R:23659109-23659229 2.88e-03 10_[+1(8.29e-05)]_46_[+3(3.58e-05)]_\ 1_[+3(4.34e-05)]_2_[+3(2.53e-05)]_29 chrM:2923-3043 5.73e-01 120 chr3R:17809191-17809311 8.68e-01 120 chr3R:11154062-11154182 9.40e-01 120 chr3R:19603097-19603217 3.04e-01 120 chr2R:11206757-11206877 3.06e-01 120 chrX:6021594-6021714 9.69e-01 120 chrX:5025363-5025483 8.39e-02 32_[+1(2.69e-05)]_80 chr2R:22658587-22658707 6.10e-01 120 chr3R:19165781-19165901 1.08e-03 37_[+3(2.91e-05)]_14_[+3(2.91e-05)]_\ 18_[+1(1.04e-05)]_27 chr3R:15291740-15291860 2.38e-02 12_[+3(4.34e-05)]_25_[+3(1.18e-05)]_\ 67 chr3L:2387926-2388046 7.96e-03 68_[+3(3.96e-05)]_44 chr2R:6501131-6501251 7.61e-02 120 chr3L:6550624-6550744 6.92e-01 120 chrM:3742-3862 9.59e-01 120 chr3L:739435-739555 2.48e-01 70_[+3(5.71e-05)]_42 chr2R:19414743-19414863 3.90e-02 96_[+1(5.12e-05)]_16 chr2L:5972106-5972226 6.51e-01 120 chr2R:23942379-23942499 9.32e-01 120 chr2L:10341528-10341648 9.56e-01 120 chr2L:15745551-15745671 2.94e-01 120 chr3R:14481791-14481911 4.13e-03 94_[+2(9.10e-05)]_18 chr3R:22044073-22044193 2.16e-02 101_[+3(2.53e-05)]_11 chr3R:21875128-21875248 6.60e-02 98_[+3(1.18e-05)]_14 chrX:15834688-15834808 4.79e-02 64_[+2(6.25e-06)]_48 chr3R:29835480-29835600 3.19e-03 8_[+4(3.73e-06)]_104 chr2R:13042049-13042169 3.66e-01 120 chr2L:2889168-2889288 1.69e-02 53_[+3(1.85e-05)]_59 chr3R:25056221-25056341 8.15e-01 120 chr3L:9381674-9381794 7.50e-03 120 chr2L:4197376-4197496 1.12e-03 76_[+2(6.25e-06)]_36 chr2R:6693128-6693248 8.93e-01 120 chrM:2720-2840 8.50e-01 120 chr3R:21829654-21829774 6.41e-01 120 chr2R:6675812-6675932 2.45e-01 120 chr2R:21522495-21522615 8.79e-01 120 chrM:7477-7597 6.09e-01 120 chr2R:9145136-9145256 9.16e-01 120 chr2R:18256970-18257090 6.95e-01 120 chr3R:16154404-16154524 3.48e-01 120 chr3L:15101811-15101931 6.49e-02 120 chr2R:10432573-10432693 8.19e-02 120 chrX:17879372-17879492 3.72e-01 120 chr3R:19643097-19643217 7.84e-03 82_[+1(3.34e-05)]_30 chr2L:10204073-10204193 7.76e-01 120 chr3L:549086-549206 5.25e-03 120 chr2R:10600513-10600633 4.58e-01 120 chr2L:1911379-1911499 7.69e-02 26_[+3(3.96e-05)]_86 chr2L:3787077-3787197 1.92e-01 120 chrX:16425253-16425373 2.49e-02 120 chr3L:16038063-16038183 1.63e-01 120 chr2L:6723355-6723475 9.06e-01 120 chr3R:10826898-10827018 2.51e-03 95_[+3(1.85e-05)]_17 chr2L:6068966-6069086 5.22e-03 53_[+4(1.49e-05)]_59 chr3R:29116256-29116376 1.43e-01 120 chr3L:7792309-7792429 5.82e-02 120 chr2L:2357410-2357530 3.95e-01 7_[+1(5.12e-05)]_105 chr3R:9941067-9941187 4.10e-01 120 chr2R:17535865-17535985 2.54e-02 13_[+1(8.29e-05)]_99 chr3R:13976314-13976434 5.84e-03 93_[+1(1.04e-05)]_19 chr3R:14286456-14286576 6.33e-02 15_[+3(2.53e-05)]_83_[+3(1.18e-05)]_\ 6 chrX:12580304-12580424 9.37e-01 120 chr2R:6023265-6023385 5.29e-01 120 chr2L:8308310-8308430 1.00e+00 120 chrX:6981734-6981854 3.78e-03 41_[+3(2.53e-05)]_71 chr2R:6632369-6632489 2.90e-02 108_[+2(3.02e-05)]_4 chr2R:10110853-10110973 4.67e-02 35_[+1(8.29e-05)]_77 chr3R:23222003-23222123 8.82e-04 48_[+4(7.57e-06)]_64 chr3L:3420465-3420585 5.11e-04 54_[+5(1.26e-06)]_58 chr2L:6644744-6644864 3.86e-01 120 chr3R:12439514-12439634 6.33e-02 120 chr3R:8142243-8142363 8.36e-01 120 chr3L:19557844-19557964 1.49e-02 120 chr2R:15842757-15842877 9.64e-01 120 chr2L:10231343-10231463 1.07e-01 109_[+3(9.04e-05)]_3 chr2L:19526471-19526591 8.89e-01 120 chr3L:15524044-15524164 5.32e-01 120 chr3L:9424582-9424702 3.19e-01 120 chr3R:9954744-9954864 1.23e-02 26_[+1(8.29e-05)]_3_[+3(9.04e-05)]_\ 75 chr3R:18923327-18923447 6.85e-04 42_[+3(1.85e-05)]_38_[+2(5.19e-05)]_\ 24 chrX:10927285-10927405 2.37e-02 24_[+1(8.29e-05)]_37_[+1(2.69e-05)]_\ 43 chr3R:17119150-17119270 9.20e-04 13_[+2(4.36e-05)]_3_[+2(1.95e-05)]_\ 29_[+3(9.04e-05)]_51 chr2L:2755299-2755419 9.34e-06 13_[+1(3.34e-05)]_21_[+2(6.25e-06)]_\ 53_[+3(1.18e-05)]_9 chrX:2658444-2658564 1.06e-04 91_[+3(1.85e-05)]_6_[+5(4.64e-05)]_\ 7 chr3L:758682-758802 9.98e-01 120 chr2L:13640589-13640709 7.59e-04 24_[+1(8.29e-05)]_31_[+2(4.36e-05)]_\ 49 chr2L:5249885-5250005 9.01e-01 120 chr2L:9705996-9706116 4.15e-03 1_[+1(1.04e-05)]_111 chr2L:20311079-20311199 7.16e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************