******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/lab.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:18389929-18390049 1.0000 120 chrX:4586896-4587016 1.0000 120 chr2R:17543836-17543956 1.0000 120 chr3R:30908096-30908216 1.0000 120 chr3L:9768590-9768710 1.0000 120 chr2L:14559145-14559265 1.0000 120 chr2L:14561780-14561900 1.0000 120 chrX:19266236-19266356 1.0000 120 chr3R:20315180-20315300 1.0000 120 chr2L:3644272-3644392 1.0000 120 chr2L:14540856-14540976 1.0000 120 chr2L:14554621-14554741 1.0000 120 chr3L:3431283-3431403 1.0000 120 chr2L:9690658-9690778 1.0000 120 chr2L:21818573-21818693 1.0000 120 chr3R:14074819-14074939 1.0000 120 chr2R:23606750-23606870 1.0000 120 chr3L:12057769-12057889 1.0000 120 chr3L:7432144-7432264 1.0000 120 chr3R:6661085-6661205 1.0000 120 chr2R:9830469-9830589 1.0000 120 chr2R:9827519-9827639 1.0000 120 chr2L:3304995-3305115 1.0000 120 chr2L:14471773-14471893 1.0000 120 chr2L:20883839-20883959 1.0000 120 chr3R:14041918-14042038 1.0000 120 chr3R:29111936-29112056 1.0000 120 chr3R:30996193-30996313 1.0000 120 chr2L:7622329-7622449 1.0000 120 chr2L:21821337-21821457 1.0000 120 chr3R:21081271-21081391 1.0000 120 chr2L:2801160-2801280 1.0000 120 chrX:10894403-10894523 1.0000 120 chr3L:1738035-1738155 1.0000 120 chr3R:20845777-20845897 1.0000 120 chr3R:6810069-6810189 1.0000 120 chr3R:18697861-18697981 1.0000 120 chr3R:16335836-16335956 1.0000 120 chr2R:18047923-18048043 1.0000 120 chr3R:21740006-21740126 1.0000 120 chr2L:9694049-9694169 1.0000 120 chr3R:28751879-28751999 1.0000 120 chr2L:14403739-14403859 1.0000 120 chr3L:20476394-20476514 1.0000 120 chr2L:6642585-6642705 1.0000 120 chr2L:20069764-20069884 1.0000 120 chr3R:6669183-6669303 1.0000 120 chr3L:3339570-3339690 1.0000 120 chr3R:10624264-10624384 1.0000 120 chr2L:13190761-13190881 1.0000 120 chr2R:21638750-21638870 1.0000 120 chrX:5884988-5885108 1.0000 120 chr3R:10119795-10119915 1.0000 120 chr3R:17949772-17949892 1.0000 120 chr2R:20839195-20839315 1.0000 120 chr3L:13986462-13986582 1.0000 120 chr3R:30923899-30924019 1.0000 120 chr3L:16670349-16670469 1.0000 120 chrX:6439629-6439749 1.0000 120 chr3R:16323214-16323334 1.0000 120 chr2L:3278859-3278979 1.0000 120 chr3L:19228706-19228826 1.0000 120 chr2R:13296955-13297075 1.0000 120 chr3L:10897139-10897259 1.0000 120 chrX:9431567-9431687 1.0000 120 chr2R:8603122-8603242 1.0000 120 chr3R:24474911-24475031 1.0000 120 chr3L:7845725-7845845 1.0000 120 chr2R:9106923-9107043 1.0000 120 chr3R:28118267-28118387 1.0000 120 chr2L:1427613-1427733 1.0000 120 chr3L:8698023-8698143 1.0000 120 chr2L:14585919-14586039 1.0000 120 chr2R:23676610-23676730 1.0000 120 chr3L:12836115-12836235 1.0000 120 chr2L:498593-498713 1.0000 120 chr2R:17109386-17109506 1.0000 120 chr3R:5278764-5278884 1.0000 120 chr3L:3801468-3801588 1.0000 120 chr3L:4222917-4223037 1.0000 120 chr2L:7579786-7579906 1.0000 120 chr2R:17712394-17712514 1.0000 120 chr2L:3755265-3755385 1.0000 120 chr2L:6870931-6871051 1.0000 120 chr3L:2745867-2745987 1.0000 120 chr3L:2411033-2411153 1.0000 120 chrX:4691346-4691466 1.0000 120 chr3R:29978715-29978835 1.0000 120 chr2R:18040073-18040193 1.0000 120 chr2R:22543012-22543132 1.0000 120 chr3R:20605433-20605553 1.0000 120 chr2R:9756280-9756400 1.0000 120 chr2R:11438832-11438952 1.0000 120 chr2L:7685448-7685568 1.0000 120 chr2L:12521845-12521965 1.0000 120 chr2R:21614073-21614193 1.0000 120 chr2R:11792739-11792859 1.0000 120 chr3L:11402423-11402543 1.0000 120 chr3L:8037929-8038049 1.0000 120 chrX:18083670-18083790 1.0000 120 chr3R:5305960-5306080 1.0000 120 chr2R:21296681-21296801 1.0000 120 chr2R:11437178-11437298 1.0000 120 chr2L:3092629-3092749 1.0000 120 chr2R:21610075-21610195 1.0000 120 chr2L:1201462-1201582 1.0000 120 chr3R:26540474-26540594 1.0000 120 chr3R:29651621-29651741 1.0000 120 chr3R:6811849-6811969 1.0000 120 chr2L:15179136-15179256 1.0000 120 chr3L:18832655-18832775 1.0000 120 chr2L:7628491-7628611 1.0000 120 chr2R:23615229-23615349 1.0000 120 chr3R:29626079-29626199 1.0000 120 chr2R:17918902-17919022 1.0000 120 chr3L:17808934-17809054 1.0000 120 chr3L:17310639-17310759 1.0000 120 chrX:2861084-2861204 1.0000 120 chr3L:15598055-15598175 1.0000 120 chr2L:6789463-6789583 1.0000 120 chr3L:13912883-13913003 1.0000 120 chr3L:17652067-17652187 1.0000 120 chr3R:22518408-22518528 1.0000 120 chr2R:23668115-23668235 1.0000 120 chr3R:13600647-13600767 1.0000 120 chr3R:25968625-25968745 1.0000 120 chr3L:17791641-17791761 1.0000 120 chr2R:20797059-20797179 1.0000 120 chr2R:13723363-13723483 1.0000 120 chr2L:1127565-1127685 1.0000 120 chr3L:17539056-17539176 1.0000 120 chr3L:2913422-2913542 1.0000 120 chr3R:17371221-17371341 1.0000 120 chr2L:892599-892719 1.0000 120 chr2L:1316599-1316719 1.0000 120 chrX:5409000-5409120 1.0000 120 chr3R:17008160-17008280 1.0000 120 chr3L:19845633-19845753 1.0000 120 chr3R:28297654-28297774 1.0000 120 chr3R:27662113-27662233 1.0000 120 chr2L:2171770-2171890 1.0000 120 chr3R:30325594-30325714 1.0000 120 chr2L:11738543-11738663 1.0000 120 chr3R:6678556-6678676 1.0000 120 chr3R:27067477-27067597 1.0000 120 chr3L:559474-559594 1.0000 120 chr2L:9943656-9943776 1.0000 120 chr2L:12593550-12593670 1.0000 120 chr2L:4861628-4861748 1.0000 120 chr3R:22503754-22503874 1.0000 120 chrX:8199115-8199235 1.0000 120 chr3R:31636653-31636773 1.0000 120 chr3R:18508427-18508547 1.0000 120 chr3R:23612227-23612347 1.0000 120 chr3R:17526192-17526312 1.0000 120 chr3L:19777525-19777645 1.0000 120 chr3L:11772738-11772858 1.0000 120 chrX:515827-515947 1.0000 120 chr3R:24467351-24467471 1.0000 120 chr3R:5696531-5696651 1.0000 120 chr3R:15696778-15696898 1.0000 120 chr2L:1214591-1214711 1.0000 120 chr2R:16126255-16126375 1.0000 120 chr2L:5569634-5569754 1.0000 120 chr3R:7505285-7505405 1.0000 120 chr3L:14650565-14650685 1.0000 120 chrX:9871774-9871894 1.0000 120 chr2R:22247824-22247944 1.0000 120 chr3R:4359737-4359857 1.0000 120 chr2L:14399426-14399546 1.0000 120 chr3R:5746788-5746908 1.0000 120 chr3R:12591870-12591990 1.0000 120 chr3R:26280517-26280637 1.0000 120 chr2L:85175-85295 1.0000 120 chrX:966930-967050 1.0000 120 chr3L:2237584-2237704 1.0000 120 chr2R:23740401-23740521 1.0000 120 chr2L:2944609-2944729 1.0000 120 chr3L:8698874-8698994 1.0000 120 chr2L:2808225-2808345 1.0000 120 chr3R:5302075-5302195 1.0000 120 chr3L:17003662-17003782 1.0000 120 chr3R:10035840-10035960 1.0000 120 chr2R:24642435-24642555 1.0000 120 chr3R:22108470-22108590 1.0000 120 chr2R:12706586-12706706 1.0000 120 chr3R:26333421-26333541 1.0000 120 chr3L:7866805-7866925 1.0000 120 chr2R:15813426-15813546 1.0000 120 chr3R:20273711-20273831 1.0000 120 chr3R:18296257-18296377 1.0000 120 chr2R:24629557-24629677 1.0000 120 chr2R:17110989-17111109 1.0000 120 chr3R:18170351-18170471 1.0000 120 chr2L:19930206-19930326 1.0000 120 chr2L:2348555-2348675 1.0000 120 chr3R:30489936-30490056 1.0000 120 chr3R:11243212-11243332 1.0000 120 chr3R:11178496-11178616 1.0000 120 chr3L:3932881-3933001 1.0000 120 chr3L:17113355-17113475 1.0000 120 chr3L:19169167-19169287 1.0000 120 chr2R:12218926-12219046 1.0000 120 chr3R:9939667-9939787 1.0000 120 chr3R:9932567-9932687 1.0000 120 chr2R:8734680-8734800 1.0000 120 chr3R:9704754-9704874 1.0000 120 chr2L:3228828-3228948 1.0000 120 chr2R:22062470-22062590 1.0000 120 chr3R:26555988-26556108 1.0000 120 chr2R:23864788-23864908 1.0000 120 chr2L:3280759-3280879 1.0000 120 chr2R:12927314-12927434 1.0000 120 chr3R:15117815-15117935 1.0000 120 chr2R:22205686-22205806 1.0000 120 chrX:13334722-13334842 1.0000 120 chrX:14727725-14727845 1.0000 120 chr3R:21198180-21198300 1.0000 120 chrX:5664344-5664464 1.0000 120 chr3R:10024164-10024284 1.0000 120 chr3L:11788315-11788435 1.0000 120 chrX:23010733-23010853 1.0000 120 chr3R:28959256-28959376 1.0000 120 chr3R:22447378-22447498 1.0000 120 chr3L:1139546-1139666 1.0000 120 chr2R:18539972-18540092 1.0000 120 chr2L:14141373-14141493 1.0000 120 chrX:18004351-18004471 1.0000 120 chr2R:22390370-22390490 1.0000 120 chr3L:19071595-19071715 1.0000 120 chr2R:22658688-22658808 1.0000 120 chrX:10184809-10184929 1.0000 120 chr3R:10099422-10099542 1.0000 120 chr3L:14510043-14510163 1.0000 120 chr3R:7892812-7892932 1.0000 120 chr2R:20271026-20271146 1.0000 120 chrX:7995173-7995293 1.0000 120 chr3L:3970506-3970626 1.0000 120 chr3L:8699739-8699859 1.0000 120 chr3L:2573082-2573202 1.0000 120 chr3L:19630847-19630967 1.0000 120 chr3L:11580077-11580197 1.0000 120 chr2R:15559288-15559408 1.0000 120 chr3R:9938624-9938744 1.0000 120 chr3L:4025870-4025990 1.0000 120 chr3L:5809795-5809915 1.0000 120 chr3R:29891314-29891434 1.0000 120 chr3L:11107568-11107688 1.0000 120 chr3L:19040281-19040401 1.0000 120 chr3L:11049541-11049661 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_lab/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/lab.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.208 G 0.197 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.208 G 0.197 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATCAATCA MEME-1 width = 8 sites = 43 llr = 378 E-value = 2.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::7a::9 pos.-specific C ::a1::8: probability G :::2:::1 matrix T :a:::a2: bits 2.3 * 2.1 * 1.9 ** * 1.6 *** ** Relative 1.4 *** *** Entropy 1.2 *** **** (12.7 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCAATCA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2808225-2808345 16 3.09e-05 TCGCGGAACG ATCAATCA AACGCTCGGC chr2L:14399426-14399546 47 3.09e-05 CAACGTGTTT ATCAATCA TACGCAACGT chr2R:16126255-16126375 36 3.09e-05 TGGGTGGGCA ATCAATCA AGACCCATTT chr3R:15696778-15696898 1 3.09e-05 . ATCAATCA ATGGCCTCGT chr3R:24467351-24467471 83 3.09e-05 GTTCCAAAGT ATCAATCA AACTTCCGCC chr3L:18832655-18832775 5 3.09e-05 CACA ATCAATCA AGCCAATAAG chr2L:1201462-1201582 1 3.09e-05 . atcaatca gtcaatcaat chr3R:20605433-20605553 32 3.09e-05 CACAAACATA ATCAATCA ATTGGATTTA chr2R:18040073-18040193 89 3.09e-05 TACCTGTATC ATCAATCA AAGGCTCTTT chr2L:7579786-7579906 19 3.09e-05 CAATGCTCCA ATCAATCA CCATTTAGAC chr3L:4222917-4223037 99 3.09e-05 TGAATGAATA ATCAATCA TTCCATTTGT chr2R:9106923-9107043 73 3.09e-05 TTTAATCGCA ATCAATCA AGTTTCAAGT chr3L:19228706-19228826 76 3.09e-05 CGGGTAGGTA ATCAATCA TTGTCAATGC chr2L:3278859-3278979 83 3.09e-05 ATGTTGTCCC ATCAATCA AGGGGTAGAT chr3L:3339570-3339690 108 3.09e-05 CCGCCTACCC ATCAATCA AAGGC chr2L:20069764-20069884 79 3.09e-05 CGGTGCATCA ATCAATCA TGTCAATCGA chr3R:14041918-14042038 92 3.09e-05 CATTTAAACA ATCAATCA AGTTGAGCGC chr2R:9827519-9827639 9 3.09e-05 GTCTCCCA ATCAATCA CCGACTATGG chr3L:7432144-7432264 57 3.09e-05 TCCGCGGGCA ATCAATCA ACAGCTGGCT chr2R:17543836-17543956 38 3.09e-05 TGCCCCGCTC ATCAATCA CTATCGCAAT chr3L:14650565-14650685 57 5.10e-05 GTTTGTACAA ATCGATCA CAGAAATGAA chr2R:21614073-21614193 88 5.10e-05 agatcgagcg atcgatca atcgatcgaG chr3L:12836115-12836235 33 5.10e-05 GGCTACAACC ATCGATCA AATTGTTTAT chr3R:21740006-21740126 19 5.10e-05 GTTCCCATCG ATCGATCA GTCTTCCCGC chrX:4586896-4587016 62 5.10e-05 CTGGCAAATC ATCGATCA TCTCAAATTC chr3L:8037929-8038049 47 9.22e-05 GCATTTTGTC ATCCATCA TCATCATTAT chr2R:9756280-9756400 77 9.22e-05 TAATGAATGT ATCAATCG AGTAGAACCT chr2L:6870931-6871051 68 9.22e-05 GAGAAGCTCA ATCAATCG GAAATCGAAA chr2L:21821337-21821457 60 9.22e-05 tccatctacc atccatcA TAATGCGAGT chr2R:23606750-23606870 46 9.22e-05 GGATGGATCA ATCCATCA AGGCGATTTT chr3R:18389929-18390049 13 9.22e-05 CAATCGAGCC ATCCATCA ATGTGATGGA chr3L:1139546-1139666 80 1.35e-04 CTTGGATTAA ATCAATTA AATCGCCTAT chrX:13334722-13334842 44 1.35e-04 TGGGCTGCTC ATCAATTA TATTTGTTCT chr3R:17008160-17008280 51 1.35e-04 ATTTCAGGCA ATCAATTA ATGAGCCAGC chrX:2861084-2861204 51 1.35e-04 GCCTTAAAAA ATCAATTA GCTTTCAGCA chr3R:29111936-29112056 79 1.35e-04 TTAGGCACTT ATCAATTA AGTGGGGGGC chr2R:9830469-9830589 101 1.35e-04 TTGCTTAAAT ATCAATTA GATCGATGGC chr3R:14074819-14074939 108 1.35e-04 TCATTATCTA ATCAATTA CAGGT chr2R:8603122-8603242 110 1.48e-04 GGTCGgatag atcgatcg atc chr2L:2801160-2801280 54 1.48e-04 ATCGATCGAG ATCGATCG CGGATGATTG chr2L:3644272-3644392 30 1.48e-04 ACGTCGGTTG ATCGATCG CCATGCCGAA chr3R:15117815-15117935 11 1.77e-04 CTACAGTGAA ATCGATTA GACGCAATTA chr3L:20476394-20476514 32 1.77e-04 CGCCAGCGTG ATCGATTA TGCGACGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2808225-2808345 3.1e-05 15_[+1]_97 chr2L:14399426-14399546 3.1e-05 46_[+1]_66 chr2R:16126255-16126375 3.1e-05 35_[+1]_77 chr3R:15696778-15696898 3.1e-05 [+1]_112 chr3R:24467351-24467471 3.1e-05 82_[+1]_30 chr3L:18832655-18832775 3.1e-05 4_[+1]_108 chr2L:1201462-1201582 3.1e-05 [+1]_112 chr3R:20605433-20605553 3.1e-05 31_[+1]_81 chr2R:18040073-18040193 3.1e-05 88_[+1]_24 chr2L:7579786-7579906 3.1e-05 18_[+1]_94 chr3L:4222917-4223037 3.1e-05 98_[+1]_14 chr2R:9106923-9107043 3.1e-05 72_[+1]_40 chr3L:19228706-19228826 3.1e-05 75_[+1]_37 chr2L:3278859-3278979 3.1e-05 82_[+1]_30 chr3L:3339570-3339690 3.1e-05 107_[+1]_5 chr2L:20069764-20069884 3.1e-05 78_[+1]_34 chr3R:14041918-14042038 3.1e-05 91_[+1]_21 chr2R:9827519-9827639 3.1e-05 8_[+1]_104 chr3L:7432144-7432264 3.1e-05 56_[+1]_56 chr2R:17543836-17543956 3.1e-05 37_[+1]_75 chr3L:14650565-14650685 5.1e-05 56_[+1]_56 chr2R:21614073-21614193 5.1e-05 87_[+1]_25 chr3L:12836115-12836235 5.1e-05 32_[+1]_80 chr3R:21740006-21740126 5.1e-05 18_[+1]_94 chrX:4586896-4587016 5.1e-05 61_[+1]_51 chr3L:8037929-8038049 9.2e-05 46_[+1]_66 chr2R:9756280-9756400 9.2e-05 76_[+1]_36 chr2L:6870931-6871051 9.2e-05 67_[+1]_45 chr2L:21821337-21821457 9.2e-05 59_[+1]_53 chr2R:23606750-23606870 9.2e-05 45_[+1]_67 chr3R:18389929-18390049 9.2e-05 12_[+1]_100 chr3L:1139546-1139666 0.00014 79_[+1]_33 chrX:13334722-13334842 0.00014 43_[+1]_69 chr3R:17008160-17008280 0.00014 50_[+1]_62 chrX:2861084-2861204 0.00014 50_[+1]_62 chr3R:29111936-29112056 0.00014 78_[+1]_34 chr2R:9830469-9830589 0.00014 100_[+1]_12 chr3R:14074819-14074939 0.00014 107_[+1]_5 chr2R:8603122-8603242 0.00015 109_[+1]_3 chr2L:2801160-2801280 0.00015 53_[+1]_59 chr2L:3644272-3644392 0.00015 29_[+1]_83 chr3R:15117815-15117935 0.00018 10_[+1]_102 chr3L:20476394-20476514 0.00018 31_[+1]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCAATCA width=8 seqs=43 chr2L:2808225-2808345 ( 16) ATCAATCA 1 chr2L:14399426-14399546 ( 47) ATCAATCA 1 chr2R:16126255-16126375 ( 36) ATCAATCA 1 chr3R:15696778-15696898 ( 1) ATCAATCA 1 chr3R:24467351-24467471 ( 83) ATCAATCA 1 chr3L:18832655-18832775 ( 5) ATCAATCA 1 chr2L:1201462-1201582 ( 1) ATCAATCA 1 chr3R:20605433-20605553 ( 32) ATCAATCA 1 chr2R:18040073-18040193 ( 89) ATCAATCA 1 chr2L:7579786-7579906 ( 19) ATCAATCA 1 chr3L:4222917-4223037 ( 99) ATCAATCA 1 chr2R:9106923-9107043 ( 73) ATCAATCA 1 chr3L:19228706-19228826 ( 76) ATCAATCA 1 chr2L:3278859-3278979 ( 83) ATCAATCA 1 chr3L:3339570-3339690 ( 108) ATCAATCA 1 chr2L:20069764-20069884 ( 79) ATCAATCA 1 chr3R:14041918-14042038 ( 92) ATCAATCA 1 chr2R:9827519-9827639 ( 9) ATCAATCA 1 chr3L:7432144-7432264 ( 57) ATCAATCA 1 chr2R:17543836-17543956 ( 38) ATCAATCA 1 chr3L:14650565-14650685 ( 57) ATCGATCA 1 chr2R:21614073-21614193 ( 88) ATCGATCA 1 chr3L:12836115-12836235 ( 33) ATCGATCA 1 chr3R:21740006-21740126 ( 19) ATCGATCA 1 chrX:4586896-4587016 ( 62) ATCGATCA 1 chr3L:8037929-8038049 ( 47) ATCCATCA 1 chr2R:9756280-9756400 ( 77) ATCAATCG 1 chr2L:6870931-6871051 ( 68) ATCAATCG 1 chr2L:21821337-21821457 ( 60) ATCCATCA 1 chr2R:23606750-23606870 ( 46) ATCCATCA 1 chr3R:18389929-18390049 ( 13) ATCCATCA 1 chr3L:1139546-1139666 ( 80) ATCAATTA 1 chrX:13334722-13334842 ( 44) ATCAATTA 1 chr3R:17008160-17008280 ( 51) ATCAATTA 1 chrX:2861084-2861204 ( 51) ATCAATTA 1 chr3R:29111936-29112056 ( 79) ATCAATTA 1 chr2R:9830469-9830589 ( 101) ATCAATTA 1 chr3R:14074819-14074939 ( 108) ATCAATTA 1 chr2R:8603122-8603242 ( 110) ATCGATCG 1 chr2L:2801160-2801280 ( 54) ATCGATCG 1 chr2L:3644272-3644392 ( 30) ATCGATCG 1 chr3R:15117815-15117935 ( 11) ATCGATTA 1 chr3L:20476394-20476514 ( 32) ATCGATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3653 E= 2.8e-010 172 -1207 -1207 -1207 -1207 -1207 -1207 178 -1207 226 -1207 -1207 115 -116 24 -1207 172 -1207 -1207 -1207 -1207 -1207 -1207 178 -1207 192 -1207 -47 154 -1207 -76 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.8e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.674419 0.093023 0.232558 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.790698 0.000000 0.209302 0.883721 0.000000 0.116279 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCAATCA MEME-1 regular expression -------------------------------------------------------------------------------- ATC[AG]AT[CT]A -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF YBCCSSCS MEME-2 width = 8 sites = 44 llr = 364 E-value = 4.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C 73aa36a5 probability G :4::54:5 matrix T 33:::::: bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 ** * Relative 1.4 ** *** Entropy 1.2 * ** *** (11.9 bits) 0.9 * ** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCCC consensus TC CG G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15559288-15559408 44 3.14e-06 GGTAATAGAA CGCCGCCC GACTGAGACA chr3R:22518408-22518528 90 3.14e-06 CACCCCTCGC CGCCGCCC ACAGTGGGCG chr2R:18539972-18540092 14 6.12e-06 CTCGAGCAGC CGCCGCCG CAGCTTCGAC chr2L:7685448-7685568 39 6.12e-06 CGTAAATAAT CGCCGCCG TTCTTATCGC chr3L:8699739-8699859 1 1.24e-05 . CCCCGCCC ACCGCGAATC chr2R:24642435-24642555 50 1.24e-05 GCAAATAGCT CCCCGCCC ACGCTTATCG chr2L:14561780-14561900 106 1.84e-05 GCAAAAGATC CCCCGCCG GATCGAT chr3R:30908096-30908216 103 2.17e-05 CCCCCCATCC CGCCCCCC CAAGAACCAG chr2R:17543836-17543956 15 3.26e-05 ACCACCCCTG CTCCGCCC TATCCTGCCC chrX:5664344-5664464 55 4.00e-05 GCGCAGCTCT CCCCGGCG CTCCTGCTTC chr2R:12927314-12927434 21 4.00e-05 CAGACAGCGC CTCCGCCG CGCTGATAAC chr3L:7866805-7866925 71 4.00e-05 TTGCTTAAGG CTCCGCCG CTAGGTAAAT chr2L:2171770-2171890 61 5.10e-05 CCAAAGCACC CCCCCCCC CTCACTTCAC chr3R:26540474-26540594 60 5.10e-05 ACCGACCGCC CGCCCGCC TACCACCAAG chr2R:23668115-23668235 108 6.15e-05 TGAGCGATGA CGCCCGCG TAGCC chr2L:12521845-12521965 77 6.15e-05 AACTTGAAAG CCCCCCCG ACTACAAAGT chrX:10894403-10894523 43 6.15e-05 TCGTCTTGGA TGCCGCCG TTTTATGGCG chr3L:2237584-2237704 74 7.01e-05 TTGATAGCAG CTCCGGCG GGCAATTAAG chr3R:15696778-15696898 87 7.01e-05 AATCACTACG CTCCGGCG TTTATAGTTG chr2L:12593550-12593670 26 8.71e-05 ATGCCTGCCA CCCCCGCC ACGCCCTTTA chr2L:1427613-1427733 41 8.71e-05 GCCGGAACAC CTCCCCCC ACACTCACCT chr3L:16670349-16670469 24 8.71e-05 CCCCAACTGA CTCCCCCC ACTTGGGTGT chr3R:10119795-10119915 43 8.71e-05 TTTCGCTTAT TGCCGGCC ACACTTCATC chr3R:16335836-16335956 58 8.71e-05 CATGATGGAT TGCCGGCC AGCTGAATAA chr2R:23606750-23606870 19 8.71e-05 TGGGAGCAGC TCCCGCCC ACCCATTCAG chr3L:19169167-19169287 36 1.08e-04 TTTACTCTTC CCCCCGCG GGAGATAAGA chr3L:11772738-11772858 15 1.08e-04 CCACACCCAC CGCCACCC AACGTCCCTC chr3R:30923899-30924019 97 1.08e-04 TAAATCTGTT TGCCGGCG GTCCGCCTTT chr3R:6810069-6810189 64 1.08e-04 TCTAATTGAT TGCCGGCG GATTACAGCA chr3R:9932567-9932687 87 1.17e-04 GGCACGCCCC TGCCCCCC CTGCCCTACC chr2L:20883839-20883959 99 1.17e-04 GATTTTTGCA TGCCCCCC TTATCGCCGA chr2R:13723363-13723483 113 1.22e-04 TATTCGAGTG TGCCCCCG chr3R:10099422-10099542 19 1.37e-04 TTCATTCCAT TTCCGCCC AGCTCTTACC chr2L:14403739-14403859 86 1.37e-04 TTTATTTGTT TTCCGCCC ATTCAGTGGT chr3R:21081271-21081391 109 1.62e-04 AAAAGGCACC CCCCACCC TACC chr2L:3644272-3644392 10 1.62e-04 GTTCATTAG TCCCGGCG ACACGTCGGT chr3L:20476394-20476514 22 1.80e-04 CCGACGATAA CGCCAGCG TGATCGATTA chr3R:4359737-4359857 56 1.95e-04 TATTTCACAT TTCCGGCC GAAGCGTTCG chr3R:6661085-6661205 41 2.13e-04 TAACCTAATC CCCCAGCC ATGTCTGTCC chr3L:19040281-19040401 65 2.36e-04 TTTTCACCCT TTCCCCCC TTGGTGACAA chr2L:9694049-9694169 37 2.36e-04 ATAACGCTTC CTCCACCG CCTTTGCATT chr2R:18047923-18048043 89 2.36e-04 TGCAGACGAA CCCCAGCG ATAAGAAGCC chr2R:12706586-12706706 97 2.60e-04 CGGCTCAAAT TGCCACCG ACTTCGGTTC chr3R:29111936-29112056 59 2.66e-04 AGGCAAACAA CTCCAGCC ACTTAGGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15559288-15559408 3.1e-06 43_[+2]_69 chr3R:22518408-22518528 3.1e-06 89_[+2]_23 chr2R:18539972-18540092 6.1e-06 13_[+2]_99 chr2L:7685448-7685568 6.1e-06 38_[+2]_74 chr3L:8699739-8699859 1.2e-05 [+2]_112 chr2R:24642435-24642555 1.2e-05 49_[+2]_63 chr2L:14561780-14561900 1.8e-05 105_[+2]_7 chr3R:30908096-30908216 2.2e-05 102_[+2]_10 chr2R:17543836-17543956 3.3e-05 14_[+2]_98 chrX:5664344-5664464 4e-05 54_[+2]_58 chr2R:12927314-12927434 4e-05 20_[+2]_92 chr3L:7866805-7866925 4e-05 70_[+2]_42 chr2L:2171770-2171890 5.1e-05 60_[+2]_52 chr3R:26540474-26540594 5.1e-05 59_[+2]_53 chr2R:23668115-23668235 6.1e-05 107_[+2]_5 chr2L:12521845-12521965 6.1e-05 76_[+2]_36 chrX:10894403-10894523 6.1e-05 42_[+2]_70 chr3L:2237584-2237704 7e-05 73_[+2]_39 chr3R:15696778-15696898 7e-05 86_[+2]_26 chr2L:12593550-12593670 8.7e-05 25_[+2]_87 chr2L:1427613-1427733 8.7e-05 40_[+2]_72 chr3L:16670349-16670469 8.7e-05 23_[+2]_89 chr3R:10119795-10119915 8.7e-05 42_[+2]_70 chr3R:16335836-16335956 8.7e-05 57_[+2]_55 chr2R:23606750-23606870 8.7e-05 18_[+2]_94 chr3L:19169167-19169287 0.00011 35_[+2]_77 chr3L:11772738-11772858 0.00011 14_[+2]_98 chr3R:30923899-30924019 0.00011 96_[+2]_16 chr3R:6810069-6810189 0.00011 63_[+2]_49 chr3R:9932567-9932687 0.00012 86_[+2]_26 chr2L:20883839-20883959 0.00012 98_[+2]_14 chr2R:13723363-13723483 0.00012 112_[+2] chr3R:10099422-10099542 0.00014 18_[+2]_94 chr2L:14403739-14403859 0.00014 85_[+2]_27 chr3R:21081271-21081391 0.00016 108_[+2]_4 chr2L:3644272-3644392 0.00016 9_[+2]_103 chr3L:20476394-20476514 0.00018 21_[+2]_91 chr3R:4359737-4359857 0.0002 55_[+2]_57 chr3R:6661085-6661205 0.00021 40_[+2]_72 chr3L:19040281-19040401 0.00024 64_[+2]_48 chr2L:9694049-9694169 0.00024 36_[+2]_76 chr2R:18047923-18048043 0.00024 88_[+2]_24 chr2R:12706586-12706706 0.00026 96_[+2]_16 chr3R:29111936-29112056 0.00027 58_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YBCCSSCS width=8 seqs=44 chr2R:15559288-15559408 ( 44) CGCCGCCC 1 chr3R:22518408-22518528 ( 90) CGCCGCCC 1 chr2R:18539972-18540092 ( 14) CGCCGCCG 1 chr2L:7685448-7685568 ( 39) CGCCGCCG 1 chr3L:8699739-8699859 ( 1) CCCCGCCC 1 chr2R:24642435-24642555 ( 50) CCCCGCCC 1 chr2L:14561780-14561900 ( 106) CCCCGCCG 1 chr3R:30908096-30908216 ( 103) CGCCCCCC 1 chr2R:17543836-17543956 ( 15) CTCCGCCC 1 chrX:5664344-5664464 ( 55) CCCCGGCG 1 chr2R:12927314-12927434 ( 21) CTCCGCCG 1 chr3L:7866805-7866925 ( 71) CTCCGCCG 1 chr2L:2171770-2171890 ( 61) CCCCCCCC 1 chr3R:26540474-26540594 ( 60) CGCCCGCC 1 chr2R:23668115-23668235 ( 108) CGCCCGCG 1 chr2L:12521845-12521965 ( 77) CCCCCCCG 1 chrX:10894403-10894523 ( 43) TGCCGCCG 1 chr3L:2237584-2237704 ( 74) CTCCGGCG 1 chr3R:15696778-15696898 ( 87) CTCCGGCG 1 chr2L:12593550-12593670 ( 26) CCCCCGCC 1 chr2L:1427613-1427733 ( 41) CTCCCCCC 1 chr3L:16670349-16670469 ( 24) CTCCCCCC 1 chr3R:10119795-10119915 ( 43) TGCCGGCC 1 chr3R:16335836-16335956 ( 58) TGCCGGCC 1 chr2R:23606750-23606870 ( 19) TCCCGCCC 1 chr3L:19169167-19169287 ( 36) CCCCCGCG 1 chr3L:11772738-11772858 ( 15) CGCCACCC 1 chr3R:30923899-30924019 ( 97) TGCCGGCG 1 chr3R:6810069-6810189 ( 64) TGCCGGCG 1 chr3R:9932567-9932687 ( 87) TGCCCCCC 1 chr2L:20883839-20883959 ( 99) TGCCCCCC 1 chr2R:13723363-13723483 ( 113) TGCCCCCG 1 chr3R:10099422-10099542 ( 19) TTCCGCCC 1 chr2L:14403739-14403859 ( 86) TTCCGCCC 1 chr3R:21081271-21081391 ( 109) CCCCACCC 1 chr2L:3644272-3644392 ( 10) TCCCGGCG 1 chr3L:20476394-20476514 ( 22) CGCCAGCG 1 chr3R:4359737-4359857 ( 56) TTCCGGCC 1 chr3R:6661085-6661205 ( 41) CCCCAGCC 1 chr3L:19040281-19040401 ( 65) TTCCCCCC 1 chr2L:9694049-9694169 ( 37) CTCCACCG 1 chr2R:18047923-18048043 ( 89) CCCCAGCG 1 chr2R:12706586-12706706 ( 97) TGCCACCG 1 chr3R:29111936-29112056 ( 59) CTCCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2004 E= 4.4e-001 -1210 166 -1210 23 -1210 50 105 2 -1210 226 -1210 -1210 -1210 226 -1210 -1210 -74 50 141 -1210 -1210 156 97 -1210 -1210 226 -1210 -1210 -1210 139 120 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.4e-001 0.000000 0.659091 0.000000 0.340909 0.000000 0.295455 0.409091 0.295455 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.295455 0.522727 0.000000 0.000000 0.613636 0.386364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.545455 0.454545 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YBCCSSCS MEME-2 regular expression -------------------------------------------------------------------------------- [CT][GCT]CC[GC][CG]C[CG] -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF KGGGCKGG MEME-3 width = 8 sites = 29 llr = 253 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :2::72:: probability G 67aa:59a matrix T 41::231: bits 2.3 ** * 2.1 ** * 1.9 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 **** ** (12.6 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGGG consensus T TT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17003662-17003782 11 2.40e-06 GGGGGTAGCG GGGGCGGG GCACTCGCTG chr3L:559474-559594 9 2.40e-06 ACTAATCG GGGGCGGG GTGAATAATT chrX:5409000-5409120 105 5.93e-06 GCTGGCCGAG TGGGCGGG CAATTACG chr2L:14554621-14554741 58 9.47e-06 CAGGAgggat ggggctgg ttacggaaag chr3R:5696531-5696651 45 1.20e-05 GAAATGCGCC GGGGCCGG AAATGGAGCA chr2L:1214591-1214711 2 2.06e-05 G TGGGCTGG ATGTCATTTA chrX:515827-515947 54 2.06e-05 ACTGGTTTTA TGGGCTGG ATGCAAAAGC chr2R:18040073-18040193 32 2.06e-05 CAATTAGCTG GGGGTGGG CAAAGAAGCC chr3R:10099422-10099542 58 2.43e-05 CGCTGCCCGA TGGGCCGG AGCATAAAAA chr2R:16126255-16126375 26 3.18e-05 ACATTTCCAC TGGGTGGG CAATCAATCA chr3L:11772738-11772858 31 4.05e-05 CCAACGTCCC TCGGCGGG CTAAACATTT chr3R:10624264-10624384 78 4.05e-05 GCCAAAACGG TCGGCGGG ACAGTGGGAC chr2L:6642585-6642705 73 4.05e-05 CTGGGGAAAT GGGGTTGG ACATATGCGA chr2L:14540856-14540976 94 4.05e-05 ACATTCCGGG GGGGTTGG TGGCCAACCC chrX:18083670-18083790 22 4.75e-05 AATTGATGAG GGGGAGGG AGGGCGTGGC chr3R:17949772-17949892 47 4.75e-05 GATTATGTTG GGGGAGGG AGGGGGTAGC chrX:19266236-19266356 42 4.75e-05 TGGCGATGGT GGGGAGGG TGGGGCAAGA chr2R:18539972-18540092 92 5.12e-05 AAAGCCCCGA GCGGCTGG CCGTGCAAAC chr3L:5809795-5809915 91 5.74e-05 GCCATGGAGT GTGGCGGG CAATTGGGGC chr3R:9939667-9939787 70 5.74e-05 GGATGATAAA GCGGCCGG CACAAGACGA chr2R:21610075-21610195 73 6.10e-05 TCGCCACTCT GGGGCGTG CGAACGAATG chr2R:17110989-17111109 45 6.83e-05 GAATGACGAA TGGGTTGG CTTAGTAAAG chr3R:27067477-27067597 88 7.87e-05 TATATATTCG TGGGTCGG TGCTCGGGCT chr3L:4222917-4223037 15 7.87e-05 TACACCTGTC TGGGTCGG CGATCCTCCA chrX:4586896-4587016 48 8.77e-05 GCCCTCCTTA TCGGCTGG CAAATCATCG chr2R:23740401-23740521 21 1.02e-04 ACTCGGCCAC TTGGCGGG CTAATATTTG chr3R:22518408-22518528 102 1.16e-04 CCGCCCACAG TGGGCGTG TCAATATTTG chr2L:1427613-1427733 28 1.20e-04 CATTTCACTC GTGGCCGG AACACCTCCC chr3R:21198180-21198300 85 1.25e-04 TCTTATCGCC GGGGCTTG TCTAGTGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17003662-17003782 2.4e-06 10_[+3]_102 chr3L:559474-559594 2.4e-06 8_[+3]_104 chrX:5409000-5409120 5.9e-06 104_[+3]_8 chr2L:14554621-14554741 9.5e-06 57_[+3]_55 chr3R:5696531-5696651 1.2e-05 44_[+3]_68 chr2L:1214591-1214711 2.1e-05 1_[+3]_111 chrX:515827-515947 2.1e-05 53_[+3]_59 chr2R:18040073-18040193 2.1e-05 31_[+3]_81 chr3R:10099422-10099542 2.4e-05 57_[+3]_55 chr2R:16126255-16126375 3.2e-05 25_[+3]_87 chr3L:11772738-11772858 4e-05 30_[+3]_82 chr3R:10624264-10624384 4e-05 77_[+3]_35 chr2L:6642585-6642705 4e-05 72_[+3]_40 chr2L:14540856-14540976 4e-05 93_[+3]_19 chrX:18083670-18083790 4.8e-05 21_[+3]_91 chr3R:17949772-17949892 4.8e-05 46_[+3]_66 chrX:19266236-19266356 4.8e-05 41_[+3]_71 chr2R:18539972-18540092 5.1e-05 91_[+3]_21 chr3L:5809795-5809915 5.7e-05 90_[+3]_22 chr3R:9939667-9939787 5.7e-05 69_[+3]_43 chr2R:21610075-21610195 6.1e-05 72_[+3]_40 chr2R:17110989-17111109 6.8e-05 44_[+3]_68 chr3R:27067477-27067597 7.9e-05 87_[+3]_25 chr3L:4222917-4223037 7.9e-05 14_[+3]_98 chrX:4586896-4587016 8.8e-05 47_[+3]_65 chr2R:23740401-23740521 0.0001 20_[+3]_92 chr3R:22518408-22518528 0.00012 101_[+3]_11 chr2L:1427613-1427733 0.00012 27_[+3]_85 chr3R:21198180-21198300 0.00013 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGGGCKGG width=8 seqs=29 chr3L:17003662-17003782 ( 11) GGGGCGGG 1 chr3L:559474-559594 ( 9) GGGGCGGG 1 chrX:5409000-5409120 ( 105) TGGGCGGG 1 chr2L:14554621-14554741 ( 58) GGGGCTGG 1 chr3R:5696531-5696651 ( 45) GGGGCCGG 1 chr2L:1214591-1214711 ( 2) TGGGCTGG 1 chrX:515827-515947 ( 54) TGGGCTGG 1 chr2R:18040073-18040193 ( 32) GGGGTGGG 1 chr3R:10099422-10099542 ( 58) TGGGCCGG 1 chr2R:16126255-16126375 ( 26) TGGGTGGG 1 chr3L:11772738-11772858 ( 31) TCGGCGGG 1 chr3R:10624264-10624384 ( 78) TCGGCGGG 1 chr2L:6642585-6642705 ( 73) GGGGTTGG 1 chr2L:14540856-14540976 ( 94) GGGGTTGG 1 chrX:18083670-18083790 ( 22) GGGGAGGG 1 chr3R:17949772-17949892 ( 47) GGGGAGGG 1 chrX:19266236-19266356 ( 42) GGGGAGGG 1 chr2R:18539972-18540092 ( 92) GCGGCTGG 1 chr3L:5809795-5809915 ( 91) GTGGCGGG 1 chr3R:9939667-9939787 ( 70) GCGGCCGG 1 chr2R:21610075-21610195 ( 73) GGGGCGTG 1 chr2R:17110989-17111109 ( 45) TGGGTTGG 1 chr3R:27067477-27067597 ( 88) TGGGTCGG 1 chr3L:4222917-4223037 ( 15) TGGGTCGG 1 chrX:4586896-4587016 ( 48) TCGGCTGG 1 chr2R:23740401-23740521 ( 21) TTGGCGGG 1 chr3R:22518408-22518528 ( 102) TGGGCGTG 1 chr2L:1427613-1427733 ( 28) GTGGCCGG 1 chr3R:21198180-21198300 ( 85) GGGGCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 3.3e+003 -1150 -1150 148 62 -1150 -27 188 -149 -1150 -1150 234 -1150 -1150 -1150 234 -1150 -155 165 -1150 -27 -1150 -1 129 9 -1150 -1150 218 -149 -1150 -1150 234 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.3e+003 0.000000 0.000000 0.551724 0.448276 0.000000 0.172414 0.724138 0.103448 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.103448 0.655172 0.000000 0.241379 0.000000 0.206897 0.482759 0.310345 0.000000 0.000000 0.896552 0.103448 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGGGCKGG MEME-3 regular expression -------------------------------------------------------------------------------- [GT]GGG[CT][GTC]GG -------------------------------------------------------------------------------- Time 19.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TTATCAGC MEME-4 width = 8 sites = 15 llr = 150 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::8::7:: pos.-specific C ::::a::a probability G ::2::3a: matrix T aa:a:::: bits 2.3 * ** 2.1 * ** 1.9 ** ** ** 1.6 ** ** ** Relative 1.4 ** ** ** Entropy 1.2 ***** ** (14.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTATCAGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5809795-5809915 43 1.93e-05 AGTTGTTGCA TTATCAGC TGAGACAGGG chr3L:4025870-4025990 44 1.93e-05 CGCAGGTTGT TTATCAGC GCAAACAAAA chr3L:2573082-2573202 4 1.93e-05 GTC TTATCAGC TGAGTATACC chr3R:21198180-21198300 40 1.93e-05 AACACGGCGC TTATCAGC CTAAAACGTT chr3R:10035840-10035960 68 1.93e-05 TCGCAAATCG TTATCAGC CCCGGAACGA chr2R:23668115-23668235 69 1.93e-05 GTTCTGCAGT TTATCAGC GTTCCCCATA chr2L:6789463-6789583 65 1.93e-05 TTAAGTATAT TTATCAGC CAGCGGCTGA chr2R:22543012-22543132 100 1.93e-05 GGAATCGTAA TTATCAGC GATAGCAAAA chr3L:10897139-10897259 6 1.93e-05 ATCAC TTATCAGC CGGTCTTTCT chr3L:14510043-14510163 78 3.18e-05 CCATTTCACC TTATCGGC TGATTGAAGC chr3R:20273711-20273831 52 3.18e-05 ATGTTTATCT TTATCGGC TTGTCTGAGT chr2R:23606750-23606870 87 3.18e-05 TCAGCCGTAA TTATCGGC CTGATAAGCG chr3R:17949772-17949892 105 4.44e-05 ATGGGGAGTG TTGTCAGC TGTCTTCA chrX:19266236-19266356 90 4.44e-05 GAGCTTCTGC TTGTCAGC TTGTCAGGGA chr3R:29651621-29651741 106 5.25e-05 TAATATCATC TTGTCGGC CATAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5809795-5809915 1.9e-05 42_[+4]_70 chr3L:4025870-4025990 1.9e-05 43_[+4]_69 chr3L:2573082-2573202 1.9e-05 3_[+4]_109 chr3R:21198180-21198300 1.9e-05 39_[+4]_73 chr3R:10035840-10035960 1.9e-05 67_[+4]_45 chr2R:23668115-23668235 1.9e-05 68_[+4]_44 chr2L:6789463-6789583 1.9e-05 64_[+4]_48 chr2R:22543012-22543132 1.9e-05 99_[+4]_13 chr3L:10897139-10897259 1.9e-05 5_[+4]_107 chr3L:14510043-14510163 3.2e-05 77_[+4]_35 chr3R:20273711-20273831 3.2e-05 51_[+4]_61 chr2R:23606750-23606870 3.2e-05 86_[+4]_26 chr3R:17949772-17949892 4.4e-05 104_[+4]_8 chrX:19266236-19266356 4.4e-05 89_[+4]_23 chr3R:29651621-29651741 5.3e-05 105_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTATCAGC width=8 seqs=15 chr3L:5809795-5809915 ( 43) TTATCAGC 1 chr3L:4025870-4025990 ( 44) TTATCAGC 1 chr3L:2573082-2573202 ( 4) TTATCAGC 1 chr3R:21198180-21198300 ( 40) TTATCAGC 1 chr3R:10035840-10035960 ( 68) TTATCAGC 1 chr2R:23668115-23668235 ( 69) TTATCAGC 1 chr2L:6789463-6789583 ( 65) TTATCAGC 1 chr2R:22543012-22543132 ( 100) TTATCAGC 1 chr3L:10897139-10897259 ( 6) TTATCAGC 1 chr3L:14510043-14510163 ( 78) TTATCGGC 1 chr3R:20273711-20273831 ( 52) TTATCGGC 1 chr2R:23606750-23606870 ( 87) TTATCGGC 1 chr3R:17949772-17949892 ( 105) TTGTCAGC 1 chrX:19266236-19266356 ( 90) TTGTCAGC 1 chr3R:29651621-29651741 ( 106) TTGTCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.0e+003 -1055 -1055 -1055 178 -1055 -1055 -1055 178 140 -1055 2 -1055 -1055 -1055 -1055 178 -1055 226 -1055 -1055 127 -1055 43 -1055 -1055 -1055 234 -1055 -1055 226 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.733333 0.000000 0.266667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCAGC MEME-4 regular expression -------------------------------------------------------------------------------- TT[AG]TC[AG]GC -------------------------------------------------------------------------------- Time 25.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CACSMCCC MEME-5 width = 8 sites = 15 llr = 151 E-value = 8.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2a::7::: pos.-specific C 8:a63aaa probability G :::4:::: matrix T :::::::: bits 2.3 * *** 2.1 * *** 1.9 * *** 1.6 ** *** Relative 1.4 **** *** Entropy 1.2 **** *** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACCACCC consensus A GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12927314-12927434 80 7.43e-06 TTGCCATAGC CACCACCC AGCAGAGCGC chr3R:9704754-9704874 89 7.43e-06 TCGCACCACC CACCACCC CCTTTCGATA chr3R:22518408-22518528 77 7.43e-06 TTGTCACGAC CACCACCC CTCGCCGCCG chr3R:26540474-26540594 89 7.43e-06 TACTTACCTT CACCACCC ACACCTCCTT chr3L:3431283-3431403 19 7.43e-06 cccactccgc caccaccc tctcTCTCTC chr2R:17543836-17543956 4 7.43e-06 GAC CACCACCC CTGCTCCGCC chr3L:559474-559594 47 1.96e-05 GTGTCGCACT CACGACCC ATAACTCATG chr2L:1127565-1127685 23 1.96e-05 AGGCTAGTCG CACGACCC GCTTGTACGT chr3R:9932567-9932687 79 2.44e-05 AGCCCCCGGG CACGCCCC TGCCCCCCCT chr3R:6678556-6678676 80 2.44e-05 TGGTCTTGGC CACGCCCC TCTGCAGACT chr2R:17712394-17712514 19 2.44e-05 ACAGCACGTA CACGCCCC GAATGGATAC chr2L:9690658-9690778 10 2.44e-05 CCACCGCTC CACGCCCC TTCGAGAGCC chr3R:7505285-7505405 83 3.52e-05 TTTAAAAAAA AACCACCC ATAGATAGCA chr2L:14471773-14471893 52 3.52e-05 GAGTCCCCAG AACCACCC AATCGCCCAT chr2L:14585919-14586039 24 4.27e-05 CTGCCAAGCA AACCCCCC TGTCCACCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12927314-12927434 7.4e-06 79_[+5]_33 chr3R:9704754-9704874 7.4e-06 88_[+5]_24 chr3R:22518408-22518528 7.4e-06 76_[+5]_36 chr3R:26540474-26540594 7.4e-06 88_[+5]_24 chr3L:3431283-3431403 7.4e-06 18_[+5]_94 chr2R:17543836-17543956 7.4e-06 3_[+5]_109 chr3L:559474-559594 2e-05 46_[+5]_66 chr2L:1127565-1127685 2e-05 22_[+5]_90 chr3R:9932567-9932687 2.4e-05 78_[+5]_34 chr3R:6678556-6678676 2.4e-05 79_[+5]_33 chr2R:17712394-17712514 2.4e-05 18_[+5]_94 chr2L:9690658-9690778 2.4e-05 9_[+5]_103 chr3R:7505285-7505405 3.5e-05 82_[+5]_30 chr2L:14471773-14471893 3.5e-05 51_[+5]_61 chr2L:14585919-14586039 4.3e-05 23_[+5]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACSMCCC width=8 seqs=15 chr2R:12927314-12927434 ( 80) CACCACCC 1 chr3R:9704754-9704874 ( 89) CACCACCC 1 chr3R:22518408-22518528 ( 77) CACCACCC 1 chr3R:26540474-26540594 ( 89) CACCACCC 1 chr3L:3431283-3431403 ( 19) CACCACCC 1 chr2R:17543836-17543956 ( 4) CACCACCC 1 chr3L:559474-559594 ( 47) CACGACCC 1 chr2L:1127565-1127685 ( 23) CACGACCC 1 chr3R:9932567-9932687 ( 79) CACGCCCC 1 chr3R:6678556-6678676 ( 80) CACGCCCC 1 chr2R:17712394-17712514 ( 19) CACGCCCC 1 chr2L:9690658-9690778 ( 10) CACGCCCC 1 chr3R:7505285-7505405 ( 83) AACCACCC 1 chr2L:14471773-14471893 ( 52) AACCACCC 1 chr2L:14585919-14586039 ( 24) AACCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 8.0e+002 -60 194 -1055 -1055 172 -1055 -1055 -1055 -1055 226 -1055 -1055 -1055 152 102 -1055 114 68 -1055 -1055 -1055 226 -1055 -1055 -1055 226 -1055 -1055 -1055 226 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 8.0e+002 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACSMCCC MEME-5 regular expression -------------------------------------------------------------------------------- [CA]AC[CG][AC]CCC -------------------------------------------------------------------------------- Time 31.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18389929-18390049 3.16e-02 12_[+1(9.22e-05)]_100 chrX:4586896-4587016 9.96e-06 44_[+4(3.18e-05)]_9_[+1(5.10e-05)]_\ 13_[+1(9.22e-05)]_30 chr2R:17543836-17543956 7.12e-06 3_[+5(7.43e-06)]_3_[+2(3.26e-05)]_\ 15_[+1(3.09e-05)]_8_[+1(5.10e-05)]_59 chr3R:30908096-30908216 7.78e-03 102_[+2(2.17e-05)]_10 chr3L:9768590-9768710 2.80e-01 120 chr2L:14559145-14559265 6.79e-02 120 chr2L:14561780-14561900 2.37e-03 105_[+2(1.84e-05)]_7 chrX:19266236-19266356 5.18e-03 41_[+3(4.75e-05)]_40_[+4(4.44e-05)]_\ 23 chr3R:20315180-20315300 6.29e-01 120 chr2L:3644272-3644392 3.54e-02 120 chr2L:14540856-14540976 4.23e-02 93_[+3(4.05e-05)]_19 chr2L:14554621-14554741 2.76e-02 57_[+3(9.47e-06)]_55 chr3L:3431283-3431403 6.30e-03 18_[+5(7.43e-06)]_94 chr2L:9690658-9690778 6.39e-03 9_[+5(2.44e-05)]_103 chr2L:21818573-21818693 9.15e-01 120 chr3R:14074819-14074939 3.40e-01 120 chr2R:23606750-23606870 2.19e-05 18_[+2(8.71e-05)]_19_[+1(9.22e-05)]_\ 33_[+4(3.18e-05)]_26 chr3L:12057769-12057889 2.64e-01 120 chr3L:7432144-7432264 6.77e-03 56_[+1(3.09e-05)]_56 chr3R:6661085-6661205 5.33e-02 120 chr2R:9830469-9830589 9.14e-02 120 chr2R:9827519-9827639 3.10e-02 8_[+1(3.09e-05)]_104 chr2L:3304995-3305115 2.95e-01 120 chr2L:14471773-14471893 8.00e-03 51_[+5(3.52e-05)]_61 chr2L:20883839-20883959 2.15e-03 120 chr3R:14041918-14042038 6.89e-02 91_[+1(3.09e-05)]_21 chr3R:29111936-29112056 8.34e-03 120 chr3R:30996193-30996313 5.37e-01 120 chr2L:7622329-7622449 1.94e-01 120 chr2L:21821337-21821457 1.22e-01 59_[+1(9.22e-05)]_53 chr3R:21081271-21081391 2.51e-03 104_[+5(1.25e-05)]_8 chr2L:2801160-2801280 1.47e-01 120 chrX:10894403-10894523 5.33e-03 42_[+2(6.15e-05)]_70 chr3L:1738035-1738155 1.93e-01 120 chr3R:20845777-20845897 7.92e-02 120 chr3R:6810069-6810189 7.20e-02 120 chr3R:18697861-18697981 5.20e-01 120 chr3R:16335836-16335956 8.50e-03 57_[+2(8.71e-05)]_55 chr2R:18047923-18048043 1.81e-01 120 chr3R:21740006-21740126 1.74e-02 18_[+1(5.10e-05)]_94 chr2L:9694049-9694169 3.70e-02 120 chr3R:28751879-28751999 4.07e-01 120 chr2L:14403739-14403859 2.63e-02 120 chr3L:20476394-20476514 7.86e-03 120 chr2L:6642585-6642705 1.33e-01 72_[+3(4.05e-05)]_40 chr2L:20069764-20069884 9.71e-02 74_[+1(3.09e-05)]_38 chr3R:6669183-6669303 2.28e-01 120 chr3L:3339570-3339690 2.26e-02 64_[+1(3.09e-05)]_35_[+1(3.09e-05)]_\ 5 chr3R:10624264-10624384 2.36e-01 77_[+3(4.05e-05)]_35 chr2L:13190761-13190881 7.92e-01 120 chr2R:21638750-21638870 1.46e-01 120 chrX:5884988-5885108 8.15e-01 120 chr3R:10119795-10119915 7.08e-02 42_[+2(8.71e-05)]_70 chr3R:17949772-17949892 4.61e-03 46_[+3(4.75e-05)]_30_[+3(4.75e-05)]_\ 12_[+4(4.44e-05)]_8 chr2R:20839195-20839315 9.93e-01 120 chr3L:13986462-13986582 9.61e-01 120 chr3R:30923899-30924019 5.24e-03 120 chr3L:16670349-16670469 2.26e-02 23_[+2(8.71e-05)]_89 chrX:6439629-6439749 9.73e-01 120 chr3R:16323214-16323334 4.81e-01 120 chr2L:3278859-3278979 4.36e-02 82_[+1(3.09e-05)]_30 chr3L:19228706-19228826 1.73e-02 75_[+1(3.09e-05)]_37 chr2R:13296955-13297075 8.73e-01 120 chr3L:10897139-10897259 1.49e-02 5_[+4(1.93e-05)]_107 chrX:9431567-9431687 7.92e-01 120 chr2R:8603122-8603242 3.47e-02 120 chr3R:24474911-24475031 9.98e-01 120 chr3L:7845725-7845845 9.43e-01 120 chr2R:9106923-9107043 1.98e-01 72_[+1(3.09e-05)]_40 chr3R:28118267-28118387 9.99e-01 120 chr2L:1427613-1427733 6.51e-04 37_[+5(7.20e-05)]_75 chr3L:8698023-8698143 1.22e-02 120 chr2L:14585919-14586039 4.97e-02 23_[+5(4.27e-05)]_89 chr2R:23676610-23676730 7.88e-01 120 chr3L:12836115-12836235 5.29e-02 32_[+1(5.10e-05)]_80 chr2L:498593-498713 8.74e-02 120 chr2R:17109386-17109506 4.44e-02 120 chr3R:5278764-5278884 1.38e-02 120 chr3L:3801468-3801588 5.43e-01 120 chr3L:4222917-4223037 3.56e-04 14_[+3(7.87e-05)]_76_[+1(3.09e-05)]_\ 14 chr2L:7579786-7579906 2.58e-02 18_[+1(3.09e-05)]_30_[+1(9.22e-05)]_\ 56 chr2R:17712394-17712514 1.12e-02 18_[+5(2.44e-05)]_94 chr2L:3755265-3755385 9.79e-01 120 chr2L:6870931-6871051 2.40e-01 67_[+1(9.22e-05)]_45 chr3L:2745867-2745987 1.65e-01 120 chr3L:2411033-2411153 1.00e+00 120 chrX:4691346-4691466 9.60e-01 120 chr3R:29978715-29978835 3.97e-01 120 chr2R:18040073-18040193 2.48e-05 31_[+3(2.06e-05)]_49_[+1(3.09e-05)]_\ 24 chr2R:22543012-22543132 1.18e-01 99_[+4(1.93e-05)]_13 chr3R:20605433-20605553 1.70e-02 31_[+1(3.09e-05)]_81 chr2R:9756280-9756400 2.11e-01 76_[+1(9.22e-05)]_36 chr2R:11438832-11438952 9.60e-01 120 chr2L:7685448-7685568 6.45e-02 38_[+2(6.12e-06)]_74 chr2L:12521845-12521965 1.55e-02 76_[+2(6.15e-05)]_36 chr2R:21614073-21614193 3.78e-02 87_[+1(5.10e-05)]_25 chr2R:11792739-11792859 1.34e-01 120 chr3L:11402423-11402543 7.52e-01 120 chr3L:8037929-8038049 9.33e-02 46_[+1(9.22e-05)]_66 chrX:18083670-18083790 1.08e-01 21_[+3(4.75e-05)]_91 chr3R:5305960-5306080 5.02e-01 120 chr2R:21296681-21296801 4.20e-01 120 chr2R:11437178-11437298 5.83e-01 120 chr2L:3092629-3092749 9.15e-01 120 chr2R:21610075-21610195 1.58e-02 72_[+3(6.10e-05)]_40 chr2L:1201462-1201582 4.83e-02 [+1(3.09e-05)]_4_[+1(3.09e-05)]_100 chr3R:26540474-26540594 1.61e-04 55_[+2(5.10e-05)]_25_[+5(7.43e-06)]_\ 24 chr3R:29651621-29651741 1.81e-01 105_[+4(5.25e-05)]_7 chr3R:6811849-6811969 7.59e-01 120 chr2L:15179136-15179256 8.48e-01 120 chr3L:18832655-18832775 4.74e-02 4_[+1(3.09e-05)]_108 chr2L:7628491-7628611 7.70e-01 120 chr2R:23615229-23615349 7.26e-01 120 chr3R:29626079-29626199 6.88e-01 120 chr2R:17918902-17919022 9.60e-01 120 chr3L:17808934-17809054 6.91e-01 120 chr3L:17310639-17310759 9.99e-01 120 chrX:2861084-2861204 1.45e-01 120 chr3L:15598055-15598175 7.44e-01 120 chr2L:6789463-6789583 4.49e-03 64_[+4(1.93e-05)]_48 chr3L:13912883-13913003 7.21e-01 120 chr3L:17652067-17652187 6.15e-01 120 chr3R:22518408-22518528 4.60e-06 76_[+5(7.43e-06)]_5_[+2(3.14e-06)]_\ 23 chr2R:23668115-23668235 3.68e-03 68_[+4(1.93e-05)]_31_[+2(6.15e-05)]_\ 5 chr3R:13600647-13600767 9.98e-01 120 chr3R:25968625-25968745 9.38e-01 120 chr3L:17791641-17791761 9.97e-01 120 chr2R:20797059-20797179 9.78e-01 120 chr2R:13723363-13723483 1.01e-01 120 chr2L:1127565-1127685 2.31e-02 22_[+5(1.96e-05)]_90 chr3L:17539056-17539176 3.27e-01 120 chr3L:2913422-2913542 3.79e-01 120 chr3R:17371221-17371341 4.13e-01 120 chr2L:892599-892719 8.90e-01 120 chr2L:1316599-1316719 5.68e-01 120 chrX:5409000-5409120 1.06e-02 104_[+3(5.93e-06)]_8 chr3R:17008160-17008280 1.90e-02 120 chr3L:19845633-19845753 8.60e-01 120 chr3R:28297654-28297774 9.99e-01 120 chr3R:27662113-27662233 4.25e-01 120 chr2L:2171770-2171890 1.64e-03 56_[+5(1.25e-05)]_56 chr3R:30325594-30325714 4.69e-01 120 chr2L:11738543-11738663 9.50e-03 120 chr3R:6678556-6678676 3.08e-02 79_[+5(2.44e-05)]_33 chr3R:27067477-27067597 1.45e-01 87_[+3(7.87e-05)]_25 chr3L:559474-559594 5.58e-05 8_[+3(2.40e-06)]_30_[+5(1.96e-05)]_\ 66 chr2L:9943656-9943776 9.65e-01 120 chr2L:12593550-12593670 1.46e-02 25_[+2(8.71e-05)]_87 chr2L:4861628-4861748 7.00e-01 120 chr3R:22503754-22503874 9.66e-01 120 chrX:8199115-8199235 2.42e-01 120 chr3R:31636653-31636773 5.22e-01 120 chr3R:18508427-18508547 9.99e-01 120 chr3R:23612227-23612347 9.91e-01 120 chr3R:17526192-17526312 9.51e-01 120 chr3L:19777525-19777645 3.43e-01 120 chr3L:11772738-11772858 3.96e-04 30_[+3(4.05e-05)]_82 chrX:515827-515947 1.18e-02 53_[+3(2.06e-05)]_59 chr3R:24467351-24467471 7.38e-02 82_[+1(3.09e-05)]_30 chr3R:5696531-5696651 2.08e-02 44_[+3(1.20e-05)]_68 chr3R:15696778-15696898 4.05e-03 [+1(3.09e-05)]_78_[+2(7.01e-05)]_26 chr2L:1214591-1214711 9.84e-02 1_[+3(2.06e-05)]_111 chr2R:16126255-16126375 8.58e-04 25_[+3(3.18e-05)]_2_[+1(3.09e-05)]_\ 77 chr2L:5569634-5569754 5.53e-01 120 chr3R:7505285-7505405 1.21e-01 82_[+5(3.52e-05)]_30 chr3L:14650565-14650685 2.90e-02 56_[+1(5.10e-05)]_56 chrX:9871774-9871894 3.36e-02 120 chr2R:22247824-22247944 9.98e-01 120 chr3R:4359737-4359857 7.06e-03 120 chr2L:14399426-14399546 2.38e-02 46_[+1(3.09e-05)]_66 chr3R:5746788-5746908 9.26e-01 120 chr3R:12591870-12591990 8.22e-01 120 chr3R:26280517-26280637 8.91e-01 120 chr2L:85175-85295 5.01e-01 120 chrX:966930-967050 8.56e-01 120 chr3L:2237584-2237704 2.09e-02 73_[+2(7.01e-05)]_39 chr2R:23740401-23740521 1.18e-01 120 chr2L:2944609-2944729 4.61e-01 120 chr3L:8698874-8698994 5.52e-01 120 chr2L:2808225-2808345 2.25e-03 15_[+1(3.09e-05)]_97 chr3R:5302075-5302195 2.40e-01 120 chr3L:17003662-17003782 1.41e-03 10_[+3(2.40e-06)]_102 chr3R:10035840-10035960 7.19e-02 67_[+4(1.93e-05)]_45 chr2R:24642435-24642555 2.09e-03 49_[+2(1.24e-05)]_63 chr3R:22108470-22108590 1.19e-01 120 chr2R:12706586-12706706 7.00e-02 120 chr3R:26333421-26333541 9.86e-01 120 chr3L:7866805-7866925 1.52e-01 70_[+2(4.00e-05)]_42 chr2R:15813426-15813546 5.14e-01 120 chr3R:20273711-20273831 7.60e-03 51_[+4(3.18e-05)]_61 chr3R:18296257-18296377 5.89e-01 120 chr2R:24629557-24629677 3.38e-01 120 chr2R:17110989-17111109 2.67e-02 44_[+3(6.83e-05)]_68 chr3R:18170351-18170471 3.19e-01 120 chr2L:19930206-19930326 9.99e-01 120 chr2L:2348555-2348675 6.97e-01 120 chr3R:30489936-30490056 7.25e-01 120 chr3R:11243212-11243332 9.95e-01 120 chr3R:11178496-11178616 5.63e-01 120 chr3L:3932881-3933001 9.36e-01 120 chr3L:17113355-17113475 4.97e-01 120 chr3L:19169167-19169287 3.93e-03 120 chr2R:12218926-12219046 9.54e-01 120 chr3R:9939667-9939787 6.33e-02 69_[+3(5.74e-05)]_43 chr3R:9932567-9932687 5.28e-03 78_[+5(2.44e-05)]_34 chr2R:8734680-8734800 6.34e-01 120 chr3R:9704754-9704874 3.60e-02 81_[+5(7.43e-06)]_31 chr2L:3228828-3228948 6.36e-01 120 chr2R:22062470-22062590 4.23e-01 120 chr3R:26555988-26556108 8.67e-01 120 chr2R:23864788-23864908 5.97e-01 120 chr2L:3280759-3280879 2.32e-01 120 chr2R:12927314-12927434 1.49e-03 20_[+2(4.00e-05)]_51_[+5(7.43e-06)]_\ 33 chr3R:15117815-15117935 5.56e-01 120 chr2R:22205686-22205806 8.81e-01 120 chrX:13334722-13334842 6.05e-02 120 chrX:14727725-14727845 8.17e-01 120 chr3R:21198180-21198300 1.08e-03 39_[+4(1.93e-05)]_73 chrX:5664344-5664464 2.75e-02 54_[+2(4.00e-05)]_58 chr3R:10024164-10024284 8.00e-01 120 chr3L:11788315-11788435 6.24e-01 120 chrX:23010733-23010853 4.58e-01 120 chr3R:28959256-28959376 8.28e-01 120 chr3R:22447378-22447498 3.90e-01 120 chr3L:1139546-1139666 3.39e-01 120 chr2R:18539972-18540092 6.61e-04 13_[+2(6.12e-06)]_70_[+3(5.12e-05)]_\ 21 chr2L:14141373-14141493 9.97e-01 120 chrX:18004351-18004471 7.64e-01 120 chr2R:22390370-22390490 6.38e-01 120 chr3L:19071595-19071715 1.00e+00 120 chr2R:22658688-22658808 9.67e-01 120 chrX:10184809-10184929 9.05e-01 120 chr3R:10099422-10099542 9.40e-04 57_[+3(2.43e-05)]_55 chr3L:14510043-14510163 2.45e-03 77_[+4(3.18e-05)]_35 chr3R:7892812-7892932 1.00e+00 120 chr2R:20271026-20271146 5.27e-01 120 chrX:7995173-7995293 9.97e-01 120 chr3L:3970506-3970626 8.93e-01 120 chr3L:8699739-8699859 9.23e-03 [+2(1.24e-05)]_44_[+2(6.15e-05)]_60 chr3L:2573082-2573202 1.11e-01 3_[+4(1.93e-05)]_109 chr3L:19630847-19630967 8.88e-01 120 chr3L:11580077-11580197 7.84e-01 120 chr2R:15559288-15559408 1.47e-03 43_[+2(3.14e-06)]_69 chr3R:9938624-9938744 9.99e-01 120 chr3L:4025870-4025990 5.07e-02 43_[+4(1.93e-05)]_69 chr3L:5809795-5809915 6.82e-04 42_[+4(1.93e-05)]_40_[+3(5.74e-05)]_\ 22 chr3R:29891314-29891434 3.55e-01 120 chr3L:11107568-11107688 7.21e-01 120 chr3L:19040281-19040401 1.60e-01 120 chr3L:11049541-11049661 1.58e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************