******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/l3neo38.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:19795963-19796083 1.0000 120 chr2R:10270315-10270435 1.0000 120 chrX:7264653-7264773 1.0000 120 chr3R:12272255-12272375 1.0000 120 chr3L:15253285-15253405 1.0000 120 chrX:5284897-5285017 1.0000 120 chr3L:3963567-3963687 1.0000 120 chr2R:13627150-13627270 1.0000 120 chr2R:11094984-11095104 1.0000 120 chr2R:15895482-15895602 1.0000 120 chr2R:6984908-6985028 1.0000 120 chrX:16193932-16194052 1.0000 120 chr3R:16560478-16560598 1.0000 120 chr2L:1128455-1128575 1.0000 120 chr2R:22675827-22675947 1.0000 120 chr3L:22608045-22608165 1.0000 120 chr3R:31310413-31310533 1.0000 120 chr3L:4858695-4858815 1.0000 120 chr3L:15275217-15275337 1.0000 120 chr3R:16554013-16554133 1.0000 120 chr3R:5032450-5032570 1.0000 120 chrX:19793742-19793862 1.0000 120 chr3R:10639752-10639872 1.0000 120 chr3L:22199148-22199268 1.0000 120 chrX:1590283-1590403 1.0000 120 chr3L:11477719-11477839 1.0000 120 chr2L:14136278-14136398 1.0000 120 chr3L:1091803-1091923 1.0000 120 chr2R:17998540-17998660 1.0000 120 chr3R:5024179-5024299 1.0000 120 chr3L:15147551-15147671 1.0000 120 chrX:19843469-19843589 1.0000 120 chrX:1224790-1224910 1.0000 120 chr3L:8540532-8540652 1.0000 120 chr3R:21341260-21341380 1.0000 120 chr2L:19376798-19376918 1.0000 120 chr2L:7169160-7169280 1.0000 120 chr3R:20284041-20284161 1.0000 120 chr2R:14028095-14028215 1.0000 120 chr3R:31703025-31703145 1.0000 120 chr3R:16875681-16875801 1.0000 120 chr2L:14145629-14145749 1.0000 120 chr2R:14019776-14019896 1.0000 120 chr3L:4189236-4189356 1.0000 120 chrX:17503446-17503566 1.0000 120 chr3R:11305993-11306113 1.0000 120 chr2L:17534106-17534226 1.0000 120 chr2R:12974963-12975083 1.0000 120 chr3L:11426771-11426891 1.0000 120 chr3L:9477804-9477924 1.0000 120 chr3R:24813486-24813606 1.0000 120 chrX:4599648-4599768 1.0000 120 chrX:16798291-16798411 1.0000 120 chr2R:15133850-15133970 1.0000 120 chr3R:16531535-16531655 1.0000 120 chrX:19792797-19792917 1.0000 120 chrX:11500411-11500531 1.0000 120 chr3L:13289887-13290007 1.0000 120 chrX:20499941-20500061 1.0000 120 chr2L:6245593-6245713 1.0000 120 chrX:3368416-3368536 1.0000 120 chr2R:24327392-24327512 1.0000 120 chr2L:12621749-12621869 1.0000 120 chr2R:21885977-21886097 1.0000 120 chrX:1588686-1588806 1.0000 120 chr2L:2930780-2930900 1.0000 120 chrX:19554196-19554316 1.0000 120 chr2R:9245681-9245801 1.0000 120 chr3R:7282734-7282854 1.0000 120 chrX:10548786-10548906 1.0000 120 chr3R:22251482-22251602 1.0000 120 chr3L:1094556-1094676 1.0000 120 chrX:17817163-17817283 1.0000 120 chr3R:8195215-8195335 1.0000 120 chr3L:1062624-1062744 1.0000 120 chr2R:18354681-18354801 1.0000 120 chr3L:1078643-1078763 1.0000 120 chrX:10533996-10534116 1.0000 120 chr3R:24610190-24610310 1.0000 120 chrX:8660488-8660608 1.0000 120 chr2L:8878454-8878574 1.0000 120 chr3R:21443353-21443473 1.0000 120 chr2R:22673434-22673554 1.0000 120 chr3R:29299892-29300012 1.0000 120 chr2R:11984539-11984659 1.0000 120 chr2L:17267486-17267606 1.0000 120 chr2R:21534529-21534649 1.0000 120 chr3L:10672625-10672745 1.0000 120 chrX:19010361-19010481 1.0000 120 chr3R:24944471-24944591 1.0000 120 chrX:1382578-1382698 1.0000 120 chr3R:9171335-9171455 1.0000 120 chr3R:23963987-23964107 1.0000 120 chrX:19791926-19792046 1.0000 120 chr2L:5055760-5055880 1.0000 120 chr3L:18191933-18192053 1.0000 120 chr3R:25152919-25153039 1.0000 120 chr3L:11310160-11310280 1.0000 120 chr2L:14472714-14472834 1.0000 120 chrX:7157722-7157842 1.0000 120 chr2L:14123210-14123330 1.0000 120 chr3R:16520583-16520703 1.0000 120 chr3L:10247257-10247377 1.0000 120 chr2L:845819-845939 1.0000 120 chr3L:13401624-13401744 1.0000 120 chrX:19159028-19159148 1.0000 120 chr3L:15178461-15178581 1.0000 120 chr3R:8813630-8813750 1.0000 120 chr2L:18892851-18892971 1.0000 120 chr2R:22464671-22464791 1.0000 120 chr3R:6977276-6977396 1.0000 120 chr3R:30224773-30224893 1.0000 120 chr3R:10618988-10619108 1.0000 120 chr2L:11347364-11347484 1.0000 120 chr3L:2877040-2877160 1.0000 120 chr3L:8108435-8108555 1.0000 120 chr2R:22230637-22230757 1.0000 120 chr3L:12456816-12456936 1.0000 120 chr2R:23577862-23577982 1.0000 120 chr2L:18896487-18896607 1.0000 120 chrX:7278149-7278269 1.0000 120 chr3L:15269531-15269651 1.0000 120 chr3L:22583862-22583982 1.0000 120 chr3R:31884443-31884563 1.0000 120 chr2R:25099817-25099937 1.0000 120 chrX:10825855-10825975 1.0000 120 chr3L:13199031-13199151 1.0000 120 chrX:1950387-1950507 1.0000 120 chrX:1602521-1602641 1.0000 120 chrX:542182-542302 1.0000 120 chr3R:9126337-9126457 1.0000 120 chrX:19782122-19782242 1.0000 120 chr2R:15131662-15131782 1.0000 120 chr2R:13343636-13343756 1.0000 120 chrX:18916379-18916499 1.0000 120 chr3L:5388758-5388878 1.0000 120 chr3L:8851838-8851958 1.0000 120 chr2L:16381165-16381285 1.0000 120 chr3R:16522180-16522300 1.0000 120 chrX:1595513-1595633 1.0000 120 chr3R:6771915-6772035 1.0000 120 chr3L:7018985-7019105 1.0000 120 chr2L:19222362-19222482 1.0000 120 chr3L:12636636-12636756 1.0000 120 chr3R:16570326-16570446 1.0000 120 chrX:9120548-9120668 1.0000 120 chr3R:22150627-22150747 1.0000 120 chr2R:24309497-24309617 1.0000 120 chr2L:6249566-6249686 1.0000 120 chrX:2970480-2970600 1.0000 120 chr2R:23664267-23664387 1.0000 120 chrX:22851444-22851564 1.0000 120 chr3R:8110711-8110831 1.0000 120 chr3R:4999764-4999884 1.0000 120 chr3L:12147960-12148080 1.0000 120 chrX:8726899-8727019 1.0000 120 chr2R:19794881-19795001 1.0000 120 chr3L:18188587-18188707 1.0000 120 chr3R:23113655-23113775 1.0000 120 chrX:7094367-7094487 1.0000 120 chr3R:4664176-4664296 1.0000 120 chrX:18920141-18920261 1.0000 120 chr2L:6847579-6847699 1.0000 120 chr2R:13091937-13092057 1.0000 120 chr3R:9492270-9492390 1.0000 120 chr2R:6599777-6599897 1.0000 120 chr2L:19145284-19145404 1.0000 120 chr2R:19819688-19819808 1.0000 120 chr2R:24741346-24741466 1.0000 120 chrX:7275327-7275447 1.0000 120 chrX:1564339-1564459 1.0000 120 chr2R:23592531-23592651 1.0000 120 chr3L:17460835-17460955 1.0000 120 chr3R:26795765-26795885 1.0000 120 chr2R:22517365-22517485 1.0000 120 chrX:3383918-3384038 1.0000 120 chr3L:5849132-5849252 1.0000 120 chr3R:15130111-15130231 1.0000 120 chr3R:27610695-27610815 1.0000 120 chr3R:10439092-10439212 1.0000 120 chrX:8622497-8622617 1.0000 120 chr2R:14439995-14440115 1.0000 120 chr3L:6018799-6018919 1.0000 120 chr3L:17176343-17176463 1.0000 120 chr2L:13555530-13555650 1.0000 120 chr3R:6946013-6946133 1.0000 120 chr2L:11351978-11352098 1.0000 120 chr2L:9972770-9972890 1.0000 120 chr2R:6602206-6602326 1.0000 120 chr3R:8698070-8698190 1.0000 120 chr2R:23149512-23149632 1.0000 120 chr2R:9515676-9515796 1.0000 120 chr2L:2483935-2484055 1.0000 120 chr2L:4128609-4128729 1.0000 120 chr3R:26933915-26934035 1.0000 120 chrX:7476869-7476989 1.0000 120 chrX:1507244-1507364 1.0000 120 chrX:13208607-13208727 1.0000 120 chr3R:9851798-9851918 1.0000 120 chr2L:17227186-17227306 1.0000 120 chr2R:7689054-7689174 1.0000 120 chr2R:15102674-15102794 1.0000 120 chr3R:16561766-16561886 1.0000 120 chr2L:19923808-19923928 1.0000 120 chr3R:22752812-22752932 1.0000 120 chr2R:18315434-18315554 1.0000 120 chrX:17741797-17741917 1.0000 120 chrX:601500-601620 1.0000 120 chr3L:21860125-21860245 1.0000 120 chr3L:3870304-3870424 1.0000 120 chr3R:25174750-25174870 1.0000 120 chr2R:22867773-22867893 1.0000 120 chrX:6026571-6026691 1.0000 120 chrX:18575310-18575430 1.0000 120 chr2R:24713168-24713288 1.0000 120 chr3R:29322340-29322460 1.0000 120 chr2R:7433167-7433287 1.0000 120 chrX:19829164-19829284 1.0000 120 chr3R:9882044-9882164 1.0000 120 chr3L:10335928-10336048 1.0000 120 chr3L:17441922-17442042 1.0000 120 chr3R:30653620-30653740 1.0000 120 chr2R:8246942-8247062 1.0000 120 chr3L:11284027-11284147 1.0000 120 chr3L:10241813-10241933 1.0000 120 chrX:12914921-12915041 1.0000 120 chr2R:22503305-22503425 1.0000 120 chrX:17339800-17339920 1.0000 120 chr3L:10670997-10671117 1.0000 120 chr3R:31717947-31718067 1.0000 120 chr2R:20911435-20911555 1.0000 120 chr2R:8236776-8236896 1.0000 120 chr2R:11615528-11615648 1.0000 120 chr3R:13897278-13897398 1.0000 120 chr2R:10312429-10312549 1.0000 120 chr3L:6337555-6337675 1.0000 120 chr3R:31822601-31822721 1.0000 120 chr3R:6921674-6921794 1.0000 120 chr3R:16876781-16876901 1.0000 120 chr3R:23325897-23326017 1.0000 120 chr2R:22508501-22508621 1.0000 120 chr2L:6236366-6236486 1.0000 120 chr3L:6822574-6822694 1.0000 120 chr3R:7104445-7104565 1.0000 120 chr2R:8052753-8052873 1.0000 120 chr2L:8577508-8577628 1.0000 120 chr3L:13660637-13660757 1.0000 120 chr2L:19237124-19237244 1.0000 120 chr3L:7995421-7995541 1.0000 120 chrX:10822242-10822362 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_l3neo38/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/l3neo38.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.232 C 0.27 G 0.258 T 0.241 Background letter frequencies (from file dataset with add-one prior applied): A 0.232 C 0.27 G 0.258 T 0.241 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCMCYCC MEME-1 width = 8 sites = 126 llr = 954 E-value = 2.1e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1621:: pos.-specific C aa9466aa probability G ::::1::: matrix T ::::23:: bits 2.1 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 **** ** (10.9 bits) 0.8 **** ** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCACCCC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22508501-22508621 94 2.43e-05 CCCCCCGATC CCCACCCC CCTGTCCCAC chrX:12914921-12915041 93 2.43e-05 CCCTTCCCCC CCCACCCC TTCGCCGCAT chrX:19829164-19829284 102 2.43e-05 CACACCACCC CCCACCCC CCACCACTCA chr2L:19923808-19923928 94 2.43e-05 TCCGCCCACA CCCACCCC CAACCAACAT chr3R:9851798-9851918 113 2.43e-05 CACCGCTTTC CCCACCCC chrX:3383918-3384038 91 2.43e-05 CTCCCCCTTC CCCACCCC GCACATGGCG chr3L:18188587-18188707 94 2.43e-05 GACAGTACCC CCCACCCC CTCCTTAACT chr2L:6249566-6249686 54 2.43e-05 TTTTTCCCCA CCCACCCC ATCGCCCCAC chrX:9120548-9120668 96 2.43e-05 CGCTTTTCCA CCCACCCC CTCCTACTTT chr2R:15131662-15131782 48 2.43e-05 CCAACCAAGC CCCACCCC CACCTCGGCC chr2R:25099817-25099937 31 2.43e-05 TGGAAGGACA CCCACCCC ACAAGGATTT chr2R:23577862-23577982 110 2.43e-05 cctGTTAACC CCCACCCC ACC chr2L:11347364-11347484 94 2.43e-05 CCTCGTTTTG CCCACCCC CTAAAACAAA chr2L:14123210-14123330 16 2.43e-05 CCGATATACT CCCACCCC ATTCCAGTGG chr2R:18354681-18354801 84 2.43e-05 CACCTGCACC CCCACCCC CGCTCCACTG chr3L:1094556-1094676 19 2.43e-05 TGCTATTCCC CCCACCCC ACAGACCCAC chrX:10548786-10548906 24 2.43e-05 ACGAATTCAC CCCACCCC CTGCCACCCC chr3R:7282734-7282854 82 2.43e-05 TCCTGTCTGC CCCACCCC CTGTTAGCCA chr2L:2930780-2930900 18 2.43e-05 CTGCAACACA CCCACCCC TCCTGCAGTG chr2L:6245593-6245713 81 2.43e-05 CGTTTTccac cccacccc accacccgtc chr2R:12974963-12975083 55 2.43e-05 cctccccctc cccacccc ctgccATCGC chr2L:17534106-17534226 30 2.43e-05 AAAATTCTAa cccacccc accactcgca chr3R:16875681-16875801 17 2.43e-05 GAAACACCTA CCCACCCC TTCCCCTTTT chr3L:22199148-22199268 46 2.43e-05 CCAAATACCT CCCACCCC TTTATGCTAA chr3R:10639752-10639872 96 2.43e-05 cggcaccctc cccacccc aaaggacacc chr3R:16554013-16554133 39 2.43e-05 GGTGTCGCCC CCCACCCC CGTGCCACTT chr3L:15275217-15275337 84 2.43e-05 CCCCAAAAAA CCCACCCC GTTTACCGAC chr3L:4858695-4858815 85 2.43e-05 TCATTTCCAC CCCACCCC CACCGTAGGT chr2R:13627150-13627270 16 2.43e-05 cacttcaacc cccacccc caccaccgcc chrX:10822242-10822362 70 4.59e-05 ccctcctatt cccactcc cttactctct chrX:6026571-6026691 47 4.59e-05 TATGCCAACT CCCACTCC ACATTATGTA chr3R:22752812-22752932 35 4.59e-05 TCCACCAACT CCCACTCC GAAGTTCACG chr2L:4128609-4128729 32 4.59e-05 CTGCAACATT CCCACTCC CCTGCCATGT chr2R:9515676-9515796 58 4.59e-05 CCGCCTTAAC CCCACTCC ACTGCCCTTT chr3L:6018799-6018919 10 4.59e-05 CCTAAACCA CCCACTCC CCATTTTCCT chrX:18920141-18920261 75 4.59e-05 CTCCCCCCCC CCCACTCC GACCAACCAT chr3L:12147960-12148080 43 4.59e-05 GTTGTTTTCC CCCACTCC GCTAAGAAAA chrX:1950387-1950507 76 4.59e-05 CCTAGATTCT CCCACTCC CGCTCCCTCA chr2L:18892851-18892971 40 4.59e-05 TTTCGGCCTG CCCACTCC ACTTGCAAAC chr2L:17267486-17267606 59 4.59e-05 TCTGTGTACC CCCACTCC CTGCCATCTC chr3R:24610190-24610310 60 4.59e-05 TGGTTACACC CCCACTCC AAACATTCCC chr2L:7169160-7169280 42 4.59e-05 caccgaacca cccactcc actccactcc chr3L:8540532-8540652 109 4.59e-05 GCACCCCCCA CCCACTCC AAAC chrX:16193932-16194052 78 4.59e-05 ctccccctcc cccactcc cctGATCCAA chr2R:10270315-10270435 4 4.59e-05 CTC CCCACTCC ACGCCCCCCT chrX:7275327-7275447 59 7.42e-05 cttcccttcc cccccccc ctgccttaac chrX:2970480-2970600 98 7.42e-05 acccccaacc cccccccc cccctcgaaa chrX:10825855-10825975 48 7.42e-05 GCATCAcccc cccccccc cccttccacc chrX:13208607-13208727 37 9.50e-05 CCCTCTCAAC CCCAACCC CTTTAAACCA chr2R:24741346-24741466 51 9.50e-05 Caccccaacc cccaaccc tcaacccgca chr3L:13199031-13199151 103 9.50e-05 AAGACCCCCG CCCAACCC AAGGCCAGCC chr2R:21534529-21534649 110 9.50e-05 AGCCCATTGA CCCAACCC GCC chr3L:1078643-1078763 15 9.50e-05 TTGTCCAGCC CCCAACCC TTTTTCCATA chrX:1224790-1224910 29 9.50e-05 CCCCAGCCAC CCCAACCC TTAACCTTTT chrX:1590283-1590403 82 9.50e-05 GCTTACCACC CCCAACCC CCAACTCTCT chr2R:10312429-10312549 70 1.42e-04 CTGACGGACC CCCATCCC CCGTCATTGG chr2R:8236776-8236896 20 1.42e-04 ACCTCCCTCT CCCCCTCC CCCTCTACCA chr3L:10241813-10241933 29 1.42e-04 GTGCCTGTGC CCCCCTCC AAAGTTTCGT chr2R:24713168-24713288 103 1.42e-04 catatccatc cccatccc catgcccatc chr2R:22867773-22867893 81 1.42e-04 AGGATATCAA CCCATCCC CCGCTAGAAA chrX:17741797-17741917 46 1.42e-04 GCCCACTGCC CCCCCTCC CTTTTCGTGC chr3R:8698070-8698190 21 1.42e-04 AGTGACTTTC CCCATCCC CAAAAGCAAT chr3L:17460835-17460955 58 1.42e-04 gccctcccct cccatccc cACACCAGCC chr2R:23664267-23664387 26 1.42e-04 CAAACCCAtt cccatccc ctttcccttc chrX:19791926-19792046 10 1.42e-04 cgctcactt cccatccc cacctccttc chr3L:10672625-10672745 2 1.42e-04 A CCCCCTCC AAATGCCCCA chrX:11500411-11500531 7 1.42e-04 TAAAAC CCCCCTCC TGCCATATTG chr3L:4189236-4189356 23 1.42e-04 CTTTTACAGC CCCCCTCC CCTTCCTAAG chr2R:17998540-17998660 31 1.42e-04 ATGCCATTCC CCCATCCC TTTTCCTTTT chr3L:17441922-17442042 113 1.61e-04 acccaatcca cccaatcc chr3R:27610695-27610815 96 1.61e-04 CAACTGCCCC CCCAATCC ACCCCGTCCC chr3R:29299892-29300012 37 1.61e-04 Ctacccaata cccaatcc cggagacccc chrX:4599648-4599768 41 1.61e-04 GGACTATCAG CCCAATCC AATCCCTCCG chr3L:3870304-3870424 21 2.01e-04 TGTTCGTTTG CCCACACC CCCTACCATT chr3L:5849132-5849252 11 2.01e-04 cgttgccgtt cccattcc tgctcccctt chrX:1595513-1595633 60 2.01e-04 CACCCCACCT CCCACACC CGCCAAAGCC chr3R:30224773-30224893 25 2.01e-04 CCCTAGCTTT CCCACACC CCTCCATGTA chr2L:8878454-8878574 58 2.01e-04 GTCCCCATTC CCCATTCC ACATCCCATC chrX:19554196-19554316 112 2.01e-04 Ggaacccaca cccacacc c chr2L:14136278-14136398 12 2.01e-04 acccatgcca cccacacc cacgtcaccc chr3L:11477719-11477839 2 2.01e-04 t cccattcc cattcccatt chr2R:20911435-20911555 111 2.25e-04 GCCTGCTCCA CCCCACCC TG chr3R:9882044-9882164 12 2.25e-04 AACCCACACC CCCCACCC ATTTAGCACC chr3R:25174750-25174870 63 2.25e-04 AGCAAGCACC CCCCACCC AACAGAAAGA chr3R:10439092-10439212 26 2.25e-04 AATCCCAAAT CCCCACCC ACTTTCCACC chr3R:23113655-23113775 104 2.25e-04 ATCGGTTTGC CCCCACCC TAgtgtgtg chrX:8660488-8660608 21 2.25e-04 CCCCTGATCA CCCCACCC ATCGGGTGCA chr3R:16531535-16531655 24 2.25e-04 CCTGATTTCC CCCCACCC ACGAGCCAGC chr2L:1128455-1128575 93 2.50e-04 TGCACGCTTA CCCCTCCC CGCACTTCTT chr2R:15102674-15102794 105 2.95e-04 TGGTGTTTCC CCCAGCCC CCCGGCAA chrX:1507244-1507364 23 2.95e-04 GCCAGTCCAA CCCCATCC ACACGTTTTT chr2R:22673434-22673554 24 2.95e-04 ATCGCCTTTC CCCCATCC TCCCTTCTGT chr3L:13289887-13290007 65 2.95e-04 GTCAGTTCCC CCCCATCC ACTCCTCCAT chr3R:12272255-12272375 28 3.16e-04 CAAACCTGGG CCAACCCC TCGTTCTAAT chr3R:16876781-16876901 74 3.63e-04 CCTGTGAATT CCCCTTCC CCACGAAAAA chr3L:21860125-21860245 29 3.63e-04 TCCACCACGC CCCCTTCC CCATTTGGAA chr2L:9972770-9972890 62 3.63e-04 TACGGAACAA CCCCTTCC CAGAGACCGC chr3R:9492270-9492390 2 3.63e-04 A CCCCTTCC CCATCATCTT chr2L:19222362-19222482 43 3.63e-04 TGTCCACTTT CCCCTTCC TCACATCCAT chrX:19782122-19782242 82 3.63e-04 tcctgctcct ccCCCACC ACTGTCTGTA chr3R:21443353-21443473 100 3.63e-04 gagcctttct ccCCCACC TCCGCAGCTA chr2L:12621749-12621869 47 3.63e-04 CCTACCCCTT CCCCTTCC ATCGCCACGA chr2R:15133850-15133970 49 3.63e-04 CCTTCCACTC CCCCTTCC ATTTTAGCCA chr2L:11351978-11352098 42 4.01e-04 CCAAGCCACC CCCAAACC ACCCACTCAG chr3R:23325897-23326017 22 4.20e-04 ACGAGATCTA CCAACTCC AGAGCCCCTG chr3R:6771915-6772035 45 4.65e-04 TACCAACCTC CCCCGCCC CTGCGCACAA chr2L:16381165-16381285 2 4.65e-04 G CCCCGCCC AACGAGCTAA chr2R:22230637-22230757 82 4.65e-04 CACCCAGCCA CCCCGCCC AGCTCTTCCC chrX:7157722-7157842 55 4.65e-04 TTTTTTTTTC CCCCGCCC ATCCAATGTC chrX:3368416-3368536 71 4.65e-04 CGCCCTCTTC CCCCGCCC ACTTTTGCCG chrX:16798291-16798411 3 4.65e-04 AT CCCCGCCC ACTGAGAACT chr3R:7104445-7104565 59 5.11e-04 CTTTCTCACT CCTACCCC TTCGCGATTT chr3R:6946013-6946133 39 5.11e-04 tccgccgcat cctacccc cGCAACCGAG chrX:8622497-8622617 6 5.11e-04 TTCAT CCACCCCC CGCAACACCC chr2R:22517365-22517485 16 5.11e-04 TCGTCACCAT CCACCCCC TTTTTGGAGA chr3R:8195215-8195335 34 5.11e-04 GCATCACACG CCACCCCC TTCTTCCCAC chr3L:11426771-11426891 111 5.11e-04 tcctcctcct cctacccc cc chr2L:19145284-19145404 36 5.74e-04 TGAGATGCGG Ccccaacc acccaaccac chrX:20499941-20500061 86 5.74e-04 TCGGGGATTT CCCCGTCC TGCTCATTTC chr3R:24944471-24944591 54 6.34e-04 agccgctcct ccacctcc tgctcctcct chr2R:21885977-21886097 76 7.51e-04 TTTCCCCTCG CCAACACC TTTTCACTCC chr3R:13897278-13897398 28 8.54e-04 GTCCGCATAT CCTATCCC TACGTATATG chr3L:2877040-2877160 11 1.01e-03 AACGCACCAC CCACTTCC CGTGAGTGTG chr3R:31703025-31703145 19 1.01e-03 GCACCACCAA CCACCACC AAGGCAGGCA chr2L:19376798-19376918 9 1.17e-03 TAATACAC CCTCATCC TACCCAGTTG chr2L:6847579-6847699 39 1.28e-03 TGGGTGGGGG CCACAACC TCGAAGGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22508501-22508621 2.4e-05 93_[+1]_19 chrX:12914921-12915041 2.4e-05 92_[+1]_20 chrX:19829164-19829284 2.4e-05 101_[+1]_11 chr2L:19923808-19923928 2.4e-05 93_[+1]_19 chr3R:9851798-9851918 2.4e-05 112_[+1] chrX:3383918-3384038 2.4e-05 90_[+1]_22 chr3L:18188587-18188707 2.4e-05 93_[+1]_19 chr2L:6249566-6249686 2.4e-05 53_[+1]_59 chrX:9120548-9120668 2.4e-05 95_[+1]_17 chr2R:15131662-15131782 2.4e-05 47_[+1]_65 chr2R:25099817-25099937 2.4e-05 30_[+1]_82 chr2R:23577862-23577982 2.4e-05 109_[+1]_3 chr2L:11347364-11347484 2.4e-05 93_[+1]_19 chr2L:14123210-14123330 2.4e-05 15_[+1]_97 chr2R:18354681-18354801 2.4e-05 83_[+1]_29 chr3L:1094556-1094676 2.4e-05 18_[+1]_94 chrX:10548786-10548906 2.4e-05 23_[+1]_89 chr3R:7282734-7282854 2.4e-05 81_[+1]_31 chr2L:2930780-2930900 2.4e-05 17_[+1]_95 chr2L:6245593-6245713 2.4e-05 80_[+1]_32 chr2R:12974963-12975083 2.4e-05 54_[+1]_58 chr2L:17534106-17534226 2.4e-05 29_[+1]_83 chr3R:16875681-16875801 2.4e-05 16_[+1]_96 chr3L:22199148-22199268 2.4e-05 45_[+1]_67 chr3R:10639752-10639872 2.4e-05 95_[+1]_17 chr3R:16554013-16554133 2.4e-05 38_[+1]_74 chr3L:15275217-15275337 2.4e-05 83_[+1]_29 chr3L:4858695-4858815 2.4e-05 84_[+1]_28 chr2R:13627150-13627270 2.4e-05 15_[+1]_97 chrX:10822242-10822362 4.6e-05 69_[+1]_43 chrX:6026571-6026691 4.6e-05 46_[+1]_66 chr3R:22752812-22752932 4.6e-05 34_[+1]_78 chr2L:4128609-4128729 4.6e-05 31_[+1]_81 chr2R:9515676-9515796 4.6e-05 57_[+1]_55 chr3L:6018799-6018919 4.6e-05 9_[+1]_103 chrX:18920141-18920261 4.6e-05 74_[+1]_38 chr3L:12147960-12148080 4.6e-05 42_[+1]_70 chrX:1950387-1950507 4.6e-05 75_[+1]_37 chr2L:18892851-18892971 4.6e-05 39_[+1]_73 chr2L:17267486-17267606 4.6e-05 58_[+1]_54 chr3R:24610190-24610310 4.6e-05 59_[+1]_53 chr2L:7169160-7169280 4.6e-05 41_[+1]_71 chr3L:8540532-8540652 4.6e-05 108_[+1]_4 chrX:16193932-16194052 4.6e-05 77_[+1]_35 chr2R:10270315-10270435 4.6e-05 3_[+1]_109 chrX:7275327-7275447 7.4e-05 58_[+1]_54 chrX:2970480-2970600 7.4e-05 97_[+1]_15 chrX:10825855-10825975 7.4e-05 47_[+1]_65 chrX:13208607-13208727 9.5e-05 36_[+1]_76 chr2R:24741346-24741466 9.5e-05 50_[+1]_62 chr3L:13199031-13199151 9.5e-05 102_[+1]_10 chr2R:21534529-21534649 9.5e-05 109_[+1]_3 chr3L:1078643-1078763 9.5e-05 14_[+1]_98 chrX:1224790-1224910 9.5e-05 28_[+1]_84 chrX:1590283-1590403 9.5e-05 81_[+1]_31 chr2R:10312429-10312549 0.00014 69_[+1]_43 chr2R:8236776-8236896 0.00014 19_[+1]_93 chr3L:10241813-10241933 0.00014 28_[+1]_84 chr2R:24713168-24713288 0.00014 102_[+1]_10 chr2R:22867773-22867893 0.00014 80_[+1]_32 chrX:17741797-17741917 0.00014 45_[+1]_67 chr3R:8698070-8698190 0.00014 20_[+1]_92 chr3L:17460835-17460955 0.00014 57_[+1]_55 chr2R:23664267-23664387 0.00014 25_[+1]_87 chrX:19791926-19792046 0.00014 9_[+1]_103 chr3L:10672625-10672745 0.00014 1_[+1]_111 chrX:11500411-11500531 0.00014 6_[+1]_106 chr3L:4189236-4189356 0.00014 22_[+1]_90 chr2R:17998540-17998660 0.00014 30_[+1]_82 chr3L:17441922-17442042 0.00016 112_[+1] chr3R:27610695-27610815 0.00016 95_[+1]_17 chr3R:29299892-29300012 0.00016 36_[+1]_76 chrX:4599648-4599768 0.00016 40_[+1]_72 chr3L:3870304-3870424 0.0002 20_[+1]_92 chr3L:5849132-5849252 0.0002 10_[+1]_102 chrX:1595513-1595633 0.0002 59_[+1]_53 chr3R:30224773-30224893 0.0002 24_[+1]_88 chr2L:8878454-8878574 0.0002 57_[+1]_55 chrX:19554196-19554316 0.0002 111_[+1]_1 chr2L:14136278-14136398 0.0002 11_[+1]_101 chr3L:11477719-11477839 0.0002 1_[+1]_111 chr2R:20911435-20911555 0.00022 110_[+1]_2 chr3R:9882044-9882164 0.00022 11_[+1]_101 chr3R:25174750-25174870 0.00022 62_[+1]_50 chr3R:10439092-10439212 0.00022 25_[+1]_87 chr3R:23113655-23113775 0.00022 103_[+1]_9 chrX:8660488-8660608 0.00022 20_[+1]_92 chr3R:16531535-16531655 0.00022 23_[+1]_89 chr2L:1128455-1128575 0.00025 92_[+1]_20 chr2R:15102674-15102794 0.0003 104_[+1]_8 chrX:1507244-1507364 0.0003 22_[+1]_90 chr2R:22673434-22673554 0.0003 23_[+1]_89 chr3L:13289887-13290007 0.0003 64_[+1]_48 chr3R:12272255-12272375 0.00032 27_[+1]_85 chr3R:16876781-16876901 0.00036 73_[+1]_39 chr3L:21860125-21860245 0.00036 28_[+1]_84 chr2L:9972770-9972890 0.00036 61_[+1]_51 chr3R:9492270-9492390 0.00036 1_[+1]_111 chr2L:19222362-19222482 0.00036 42_[+1]_70 chrX:19782122-19782242 0.00036 81_[+1]_31 chr3R:21443353-21443473 0.00036 99_[+1]_13 chr2L:12621749-12621869 0.00036 46_[+1]_66 chr2R:15133850-15133970 0.00036 48_[+1]_64 chr2L:11351978-11352098 0.0004 41_[+1]_71 chr3R:23325897-23326017 0.00042 21_[+1]_91 chr3R:6771915-6772035 0.00047 44_[+1]_68 chr2L:16381165-16381285 0.00047 1_[+1]_111 chr2R:22230637-22230757 0.00047 81_[+1]_31 chrX:7157722-7157842 0.00047 54_[+1]_58 chrX:3368416-3368536 0.00047 70_[+1]_42 chrX:16798291-16798411 0.00047 2_[+1]_110 chr3R:7104445-7104565 0.00051 58_[+1]_54 chr3R:6946013-6946133 0.00051 38_[+1]_74 chrX:8622497-8622617 0.00051 5_[+1]_107 chr2R:22517365-22517485 0.00051 15_[+1]_97 chr3R:8195215-8195335 0.00051 33_[+1]_79 chr3L:11426771-11426891 0.00051 110_[+1]_2 chr2L:19145284-19145404 0.00057 35_[+1]_77 chrX:20499941-20500061 0.00057 85_[+1]_27 chr3R:24944471-24944591 0.00063 53_[+1]_59 chr2R:21885977-21886097 0.00075 75_[+1]_37 chr3R:13897278-13897398 0.00085 27_[+1]_85 chr3L:2877040-2877160 0.001 10_[+1]_102 chr3R:31703025-31703145 0.001 18_[+1]_94 chr2L:19376798-19376918 0.0012 8_[+1]_104 chr2L:6847579-6847699 0.0013 38_[+1]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCMCYCC width=8 seqs=126 chr2R:22508501-22508621 ( 94) CCCACCCC 1 chrX:12914921-12915041 ( 93) CCCACCCC 1 chrX:19829164-19829284 ( 102) CCCACCCC 1 chr2L:19923808-19923928 ( 94) CCCACCCC 1 chr3R:9851798-9851918 ( 113) CCCACCCC 1 chrX:3383918-3384038 ( 91) CCCACCCC 1 chr3L:18188587-18188707 ( 94) CCCACCCC 1 chr2L:6249566-6249686 ( 54) CCCACCCC 1 chrX:9120548-9120668 ( 96) CCCACCCC 1 chr2R:15131662-15131782 ( 48) CCCACCCC 1 chr2R:25099817-25099937 ( 31) CCCACCCC 1 chr2R:23577862-23577982 ( 110) CCCACCCC 1 chr2L:11347364-11347484 ( 94) CCCACCCC 1 chr2L:14123210-14123330 ( 16) CCCACCCC 1 chr2R:18354681-18354801 ( 84) CCCACCCC 1 chr3L:1094556-1094676 ( 19) CCCACCCC 1 chrX:10548786-10548906 ( 24) CCCACCCC 1 chr3R:7282734-7282854 ( 82) CCCACCCC 1 chr2L:2930780-2930900 ( 18) CCCACCCC 1 chr2L:6245593-6245713 ( 81) CCCACCCC 1 chr2R:12974963-12975083 ( 55) CCCACCCC 1 chr2L:17534106-17534226 ( 30) CCCACCCC 1 chr3R:16875681-16875801 ( 17) CCCACCCC 1 chr3L:22199148-22199268 ( 46) CCCACCCC 1 chr3R:10639752-10639872 ( 96) CCCACCCC 1 chr3R:16554013-16554133 ( 39) CCCACCCC 1 chr3L:15275217-15275337 ( 84) CCCACCCC 1 chr3L:4858695-4858815 ( 85) CCCACCCC 1 chr2R:13627150-13627270 ( 16) CCCACCCC 1 chrX:10822242-10822362 ( 70) CCCACTCC 1 chrX:6026571-6026691 ( 47) CCCACTCC 1 chr3R:22752812-22752932 ( 35) CCCACTCC 1 chr2L:4128609-4128729 ( 32) CCCACTCC 1 chr2R:9515676-9515796 ( 58) CCCACTCC 1 chr3L:6018799-6018919 ( 10) CCCACTCC 1 chrX:18920141-18920261 ( 75) CCCACTCC 1 chr3L:12147960-12148080 ( 43) CCCACTCC 1 chrX:1950387-1950507 ( 76) CCCACTCC 1 chr2L:18892851-18892971 ( 40) CCCACTCC 1 chr2L:17267486-17267606 ( 59) CCCACTCC 1 chr3R:24610190-24610310 ( 60) CCCACTCC 1 chr2L:7169160-7169280 ( 42) CCCACTCC 1 chr3L:8540532-8540652 ( 109) CCCACTCC 1 chrX:16193932-16194052 ( 78) CCCACTCC 1 chr2R:10270315-10270435 ( 4) CCCACTCC 1 chrX:7275327-7275447 ( 59) CCCCCCCC 1 chrX:2970480-2970600 ( 98) CCCCCCCC 1 chrX:10825855-10825975 ( 48) CCCCCCCC 1 chrX:13208607-13208727 ( 37) CCCAACCC 1 chr2R:24741346-24741466 ( 51) CCCAACCC 1 chr3L:13199031-13199151 ( 103) CCCAACCC 1 chr2R:21534529-21534649 ( 110) CCCAACCC 1 chr3L:1078643-1078763 ( 15) CCCAACCC 1 chrX:1224790-1224910 ( 29) CCCAACCC 1 chrX:1590283-1590403 ( 82) CCCAACCC 1 chr2R:10312429-10312549 ( 70) CCCATCCC 1 chr2R:8236776-8236896 ( 20) CCCCCTCC 1 chr3L:10241813-10241933 ( 29) CCCCCTCC 1 chr2R:24713168-24713288 ( 103) CCCATCCC 1 chr2R:22867773-22867893 ( 81) CCCATCCC 1 chrX:17741797-17741917 ( 46) CCCCCTCC 1 chr3R:8698070-8698190 ( 21) CCCATCCC 1 chr3L:17460835-17460955 ( 58) CCCATCCC 1 chr2R:23664267-23664387 ( 26) CCCATCCC 1 chrX:19791926-19792046 ( 10) CCCATCCC 1 chr3L:10672625-10672745 ( 2) CCCCCTCC 1 chrX:11500411-11500531 ( 7) CCCCCTCC 1 chr3L:4189236-4189356 ( 23) CCCCCTCC 1 chr2R:17998540-17998660 ( 31) CCCATCCC 1 chr3L:17441922-17442042 ( 113) CCCAATCC 1 chr3R:27610695-27610815 ( 96) CCCAATCC 1 chr3R:29299892-29300012 ( 37) CCCAATCC 1 chrX:4599648-4599768 ( 41) CCCAATCC 1 chr3L:3870304-3870424 ( 21) CCCACACC 1 chr3L:5849132-5849252 ( 11) CCCATTCC 1 chrX:1595513-1595633 ( 60) CCCACACC 1 chr3R:30224773-30224893 ( 25) CCCACACC 1 chr2L:8878454-8878574 ( 58) CCCATTCC 1 chrX:19554196-19554316 ( 112) CCCACACC 1 chr2L:14136278-14136398 ( 12) CCCACACC 1 chr3L:11477719-11477839 ( 2) CCCATTCC 1 chr2R:20911435-20911555 ( 111) CCCCACCC 1 chr3R:9882044-9882164 ( 12) CCCCACCC 1 chr3R:25174750-25174870 ( 63) CCCCACCC 1 chr3R:10439092-10439212 ( 26) CCCCACCC 1 chr3R:23113655-23113775 ( 104) CCCCACCC 1 chrX:8660488-8660608 ( 21) CCCCACCC 1 chr3R:16531535-16531655 ( 24) CCCCACCC 1 chr2L:1128455-1128575 ( 93) CCCCTCCC 1 chr2R:15102674-15102794 ( 105) CCCAGCCC 1 chrX:1507244-1507364 ( 23) CCCCATCC 1 chr2R:22673434-22673554 ( 24) CCCCATCC 1 chr3L:13289887-13290007 ( 65) CCCCATCC 1 chr3R:12272255-12272375 ( 28) CCAACCCC 1 chr3R:16876781-16876901 ( 74) CCCCTTCC 1 chr3L:21860125-21860245 ( 29) CCCCTTCC 1 chr2L:9972770-9972890 ( 62) CCCCTTCC 1 chr3R:9492270-9492390 ( 2) CCCCTTCC 1 chr2L:19222362-19222482 ( 43) CCCCTTCC 1 chrX:19782122-19782242 ( 82) CCCCCACC 1 chr3R:21443353-21443473 ( 100) CCCCCACC 1 chr2L:12621749-12621869 ( 47) CCCCTTCC 1 chr2R:15133850-15133970 ( 49) CCCCTTCC 1 chr2L:11351978-11352098 ( 42) CCCAAACC 1 chr3R:23325897-23326017 ( 22) CCAACTCC 1 chr3R:6771915-6772035 ( 45) CCCCGCCC 1 chr2L:16381165-16381285 ( 2) CCCCGCCC 1 chr2R:22230637-22230757 ( 82) CCCCGCCC 1 chrX:7157722-7157842 ( 55) CCCCGCCC 1 chrX:3368416-3368536 ( 71) CCCCGCCC 1 chrX:16798291-16798411 ( 3) CCCCGCCC 1 chr3R:7104445-7104565 ( 59) CCTACCCC 1 chr3R:6946013-6946133 ( 39) CCTACCCC 1 chrX:8622497-8622617 ( 6) CCACCCCC 1 chr2R:22517365-22517485 ( 16) CCACCCCC 1 chr3R:8195215-8195335 ( 34) CCACCCCC 1 chr3L:11426771-11426891 ( 111) CCTACCCC 1 chr2L:19145284-19145404 ( 36) CCCCAACC 1 chrX:20499941-20500061 ( 86) CCCCGTCC 1 chr3R:24944471-24944591 ( 54) CCACCTCC 1 chr2R:21885977-21886097 ( 76) CCAACACC 1 chr3R:13897278-13897398 ( 28) CCTATCCC 1 chr3L:2877040-2877160 ( 11) CCACTTCC 1 chr3R:31703025-31703145 ( 19) CCACCACC 1 chr2L:19376798-19376918 ( 9) CCTCATCC 1 chr2L:6847579-6847699 ( 39) CCACAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.11661 E= 2.1e-060 -1362 189 -1362 -1362 -1362 189 -1362 -1362 -154 171 -1362 -260 147 40 -1362 -1362 -22 108 -202 -53 -128 104 -1362 54 -1362 189 -1362 -1362 -1362 189 -1362 -1362 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 2.1e-060 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.079365 0.880952 0.000000 0.039683 0.642857 0.357143 0.000000 0.000000 0.198413 0.571429 0.063492 0.166667 0.095238 0.555556 0.000000 0.349206 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCMCYCC MEME-1 regular expression -------------------------------------------------------------------------------- CCC[AC]C[CT]CC -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GGDGGGGG MEME-2 width = 8 sites = 117 llr = 877 E-value = 4.0e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::32:::: pos.-specific C ::1::::: probability G aa3779aa matrix T ::3121:: bits 2.1 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** *** Entropy 1.1 ** **** (10.8 bits) 0.8 ** **** 0.6 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus A T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19237124-19237244 18 1.77e-05 GGGCGGCAAT GGAGGGGG CGTGGACGTG chr2L:17227186-17227306 77 1.77e-05 CAGGGTAAAA GGAGGGGG GTTCGGGATG chr2R:19819688-19819808 8 1.77e-05 TTAGGTA GGAGGGGG TAGAAATCGG chr3L:2877040-2877160 100 1.77e-05 ACGAGTGTGT GGAGGGGG GGAGGACGGG chr2L:845819-845939 79 1.77e-05 TGGGGGGTGT GGAGGGGG AAGGCGCTGA chr2L:5055760-5055880 69 1.77e-05 GCTGTCGCTt ggaggggg gaactcggag chr2R:11984539-11984659 88 1.77e-05 GAGAAATGTG GGAGGGGG TTGTTTAACC chrX:8660488-8660608 109 1.77e-05 CAAAACGTgg ggaggggg agag chr3L:4189236-4189356 77 1.77e-05 tgggtAAGTG GGAGGGGG AGAGCCTACT chr3L:15147551-15147671 69 1.77e-05 CAGTGGTGTG GGAGGGGG CTGCAAAGGC chr3L:10670997-10671117 12 5.56e-05 AAAATAAGGG GGGGGGGG TGGTGGTCGG chr3R:30653620-30653740 24 5.56e-05 TCCGAAAGGG GGGGGGGG GGGAAGTGGC chr3R:29322340-29322460 9 5.56e-05 AAGTAGTA GGGGGGGG TTCTTGGAAA chrX:601500-601620 79 5.56e-05 ATGGAAGACT GGTGGGGG AAGGCAAATC chr3R:26933915-26934035 95 5.56e-05 GTGTGTGTGT GGGGGGGG CAAAACTCCC chr3R:26795765-26795885 53 5.56e-05 GCCCAAAGTG GGTGGGGG TGGGGCTGAA chr2L:6847579-6847699 31 5.56e-05 AATAGAGGTG GGTGGGGG CCACAACCTC chrX:18920141-18920261 107 5.56e-05 ATATAGTGGG GGTGGGGG TGGTAG chr3R:4999764-4999884 58 5.56e-05 TTGGTGGGGG GGGGGGGG GTGTAGGAGG chrX:22851444-22851564 89 5.56e-05 cggtgggggt ggtggggg tggtggggga chr2R:13343636-13343756 79 5.56e-05 gtggctggtg ggtgggGG CGTTGCCTTG chr2L:18896487-18896607 28 5.56e-05 AAACGGTAGA GGTGGGGG TGGGGAGGTC chr3L:15178461-15178581 31 5.56e-05 ACACTCGAAT GGTGGGGG GACTTGTGCT chrX:19159028-19159148 113 5.56e-05 GGTGGTAAAG GGGGGGGG chr2R:22673434-22673554 61 5.56e-05 TGTTCCGAAA GGGGGGGG GGGGGGGGCG chrX:10533996-10534116 113 5.56e-05 aaaagggaca ggtggggg chrX:17817163-17817283 46 5.56e-05 AAAAAAAGGG GGTGGGGG TATGGTATGG chrX:3368416-3368536 23 5.56e-05 GGGGGCAGGG GGTGGGGG ATGTGGAAGT chrX:19792797-19792917 18 5.56e-05 GTGAGTGGGG GGTGGGGG GCAGTATTGG chrX:4599648-4599768 25 5.56e-05 ggagggtgca ggTGGGGG ACTATCAGCC chr3L:9477804-9477924 10 5.56e-05 GGCACTGCA GGGGGGGG GGGTCACAAG chr2L:14145629-14145749 53 5.56e-05 GGCCAAAGTG GGTGGGGG GGTCGTCTGG chr2R:14028095-14028215 89 5.56e-05 AGAGGAACAA GGGGGGGG GAGGGTTTCG chr2R:17998540-17998660 71 5.56e-05 GAACTTCTTT GGTGGGGG GAAAACACCA chr2L:1128455-1128575 27 5.56e-05 GATAAAGGGG GGTGGGGG GGTGGTTGAT chr3L:15253285-15253405 80 5.56e-05 ATGGTGGAAG GGGGGGGG AGGGGGAGAG chrX:7264653-7264773 30 5.56e-05 TGATAGGAAT GGTGGGGG GTGGTCGAGA chrX:19795963-19796083 24 5.56e-05 GCGGAGTGGG GGGGGGGG TGGGTTGAGG chrX:18575310-18575430 49 7.21e-05 CGAGAGCCGA GGAGTGGG GAGCAGTTGA chr3R:15130111-15130231 52 7.21e-05 CCCACCAATT GGAGTGGG GGTACGGCAA chrX:1564339-1564459 77 7.21e-05 GAAGGGCTCT GGAGTGGG CAGCGATTAG chr3R:9171335-9171455 109 7.21e-05 AGGAGAAGGC GGAGTGGG GAAA chr2R:8052753-8052873 74 1.08e-04 ACGTCAGCAA GGGGTGGG GTGTGGAGGT chr3R:31717947-31718067 68 1.08e-04 AGTGCGCAGC GGTGTGGG GGACGATGgg chr3R:4664176-4664296 43 1.08e-04 CTGTGCTATG GGGGTGGG AAAAAGCAGC chr3R:16522180-16522300 16 1.08e-04 GCCGGGATTT GGTGTGGG GTGCCACAAA chr2L:16381165-16381285 87 1.08e-04 TTGAGAACAG GGGGTGGG AATGGGTTAA chr3R:6977276-6977396 33 1.08e-04 GGCCAGAAGA GGGGTGGG GAGCGCGATG chr3L:10247257-10247377 103 1.08e-04 TGAAAATAGT GGGGTGGG AATGGGAATG chrX:20499941-20500061 64 1.08e-04 GGGGGGATGG GGGGTGGG TGGTTCGGGG chr3R:24813486-24813606 37 1.08e-04 TATGCGTAGT GGGGTGGG AAATTGGGTG chr3R:5032450-5032570 26 1.08e-04 TTAGCCGCGt ggggtggg tgggttgtgt chr2R:24309497-24309617 82 1.23e-04 TCACTGGATG GGAAGGGG GATGTCTAAG chrX:18916379-18916499 107 1.23e-04 Cgaagggaag ggaagggg ggtaag chrX:5284897-5285017 102 1.23e-04 aagaggaagt ggaagggg aaggggaagt chr3L:10335928-10336048 33 1.78e-04 ctggcgggcg ggcgggGG AACCCTAAAC chrX:8726899-8727019 29 1.78e-04 TGGTGGGGAG GGGAGGGG TGTTACAGAA chr3R:8110711-8110831 24 1.78e-04 AGAGAAGGAG GGTAGGGG TAGAGGGGTG chrX:2970480-2970600 56 1.78e-04 GTGGGCGAAT GGTAGGGG GCACCATGAG chr3R:10618988-10619108 93 1.78e-04 CGCAATTGGG GGCGGGGG TGCCGTTTTC chr3R:8813630-8813750 55 1.78e-04 GGTGTTTTTT GGGAGGGG ATTTACACAT chr3R:25152919-25153039 53 1.78e-04 gaaggaggtg ggcggggg tgtatgtgtg chr3R:22251482-22251602 46 1.78e-04 TGGTGTGTAT GGCGGGGG GGCAAGGGAA chrX:17503446-17503566 80 1.78e-04 AAgagccgga ggcggggg cggtggcgga chr3R:21341260-21341380 31 1.78e-04 CCGTGAGGGT GGCGGGGG TGATGGAGAA chr2R:11094984-11095104 2 1.78e-04 g ggtagggg gAATTTTAGG chr3L:11284027-11284147 62 1.95e-04 ATGGCTATGG GGATGGGG TTTCGCTGGG chr2R:23592531-23592651 16 1.95e-04 TGGCAATTGT GGATGGGG GAATGGATGG chrX:19010361-19010481 99 1.95e-04 TGGGCCAAgg ggatgggg atgggccttt chr2R:22675827-22675947 71 1.95e-04 CAGGGAatgg ggatgggg atggggatgt chr2R:15895482-15895602 90 1.95e-04 CAGAATGGAT GGATGGGG ATCCAGAAGG chr3L:17176343-17176463 59 2.30e-04 TTTTCTCGGT GGGTGGGG TCGGAAAATG chrX:7094367-7094487 49 2.30e-04 GCGGCCAAGT GGGTGGGG CGGCCTAAAT chr3R:22150627-22150747 78 2.30e-04 AGGAAAAAGT GGGTGGGG TTACCCCACA chr3L:5388758-5388878 90 2.30e-04 GTGTGTAAGT GGTTGGGG CAGGAAAATG chr3L:1062624-1062744 32 2.30e-04 GAAAACggtg ggttgggg gatggtggat chrX:19793742-19793862 97 2.30e-04 TGAACGTGGT GGGTGGGG TTTGCTGAAA chr2R:18315434-18315554 97 2.61e-04 GTGGTGGAAT GGAATGGG TAAGtgggca chr2R:7689054-7689174 76 2.61e-04 aggaggagga ggaggTGG GCCGGGGAAT chr2L:2483935-2484055 95 2.61e-04 GGAaggagga ggaggtgg aggaggaggg chr2R:23577862-23577982 52 2.61e-04 ATTAGGCCTC GGAGGTGG ccccctcctc chr3L:11310160-11310280 106 2.61e-04 CGTTGGGGTT GGAATGGG TAAGGGG chr3R:20284041-20284161 113 2.61e-04 GTTGATTTGG GGAATGGG chr3R:12272255-12272375 82 2.61e-04 GAAAGTGGGC GGAGGTGG GTGGTGGGAG chr3L:7995421-7995541 91 3.48e-04 AAATAAGCGG GGGATGGG AAAATCGAGT chr2R:20911435-20911555 8 3.48e-04 tcggaat gggatggg atgggcacgg chr3R:16561766-16561886 99 3.48e-04 TTTCACCTCA GGTGGTGG GCGGATGGGA chr2L:13555530-13555650 31 3.48e-04 TGATGATGGT GGTGGTGG GGCGGCGTTG chr3R:31884443-31884563 64 3.48e-04 GTTGCCGGAG GGCGTGGG CAGTTGGGCA chrX:1382578-1382698 39 3.48e-04 TTAGTGCGTC GGGATGGG CTGTGTGCCT chr2R:21534529-21534649 34 3.48e-04 CGCTTAGTTC GGTGGTGG CGACACCGAC chrX:19554196-19554316 91 3.48e-04 CGACGTCGAT GGGATGGG CGTGgaaccc chrX:11500411-11500531 107 3.48e-04 CATTTCgacg gggatggg tatggg chr2R:6984908-6985028 24 3.48e-04 CGTGCAAAAC GGTGGTGG CCGCTGTCTC chr2R:19794881-19795001 61 3.66e-04 TTTGGACTTT GGCAGGGG GAGCGCAGGC chrX:1588686-1588806 12 3.66e-04 TTCCGGTTTG GGCAGGGG TTGCAAGGTC chr3L:22608045-22608165 66 3.66e-04 acacaaCAGC GGCAGGGG GAAGCGCGGC chr2R:23149512-23149632 94 3.82e-04 GCGGGATCGG GGATTGGG TTTGAATTGG chr3R:27610695-27610815 35 4.15e-04 gggacgggGT GGTTTGGG TTAGGTTAAA chr3R:16560478-16560598 67 4.15e-04 CATTGACGTG GGTTTGGG GTCGCCAGCA chr3R:16570326-16570446 7 4.50e-04 ggagga ggaggagg acgacgaaca chr3L:12456816-12456936 90 4.50e-04 AACGTTGAAT ggaggagg aggacaagtt chr2L:8577508-8577628 57 5.00e-04 TGACAGTGAG GGGGGAGG AGTGTGGGGA chr2R:22867773-22867893 30 5.00e-04 GCAGCGAGTG GGAGAGGG ATGGCACGAG chrX:16798291-16798411 98 5.00e-04 agagagtgag ggagaggg ggagagTGGT chr3L:3963567-3963687 84 5.00e-04 GTATTTTGAC GGGGGAGG GCTGGGCGGA chr2R:7433167-7433287 57 5.50e-04 CGAATGCCCC GGGGAGGG CATGCCATCT chr3L:7018985-7019105 93 5.50e-04 tatgagtgtg ggtgaggg taagggtgTG chr2R:8246942-8247062 22 5.83e-04 GTACAATCAG GGGGTTGG TTGGAAAACC chrX:13208607-13208727 93 5.83e-04 TGCGGCCAAA GGGGTTGG TCAGGGGGAC chr2L:17267486-17267606 3 6.16e-04 GT GGAAGTGG GAAAGGGCAT chr2L:6236366-6236486 30 7.24e-04 ATAAAAAGAG GGTCGGGG CAGGGAGGAC chrX:7476869-7476989 60 7.24e-04 AAAATAAAGT GGTCGGGG GGAGTGCGAG chr3R:30224773-30224893 69 7.24e-04 GCCGTCCTGT GGGCGGGG TGCAAAAAAT chr3R:31310413-31310533 7 7.24e-04 AGGGGC GGCATGGG CATGTATCTT chr3L:18191933-18192053 24 8.05e-04 TGGGGGCTGA GGGTGTGG AATTGGGGGT chr3L:15269531-15269651 48 8.52e-04 CATAGCGACC GGAAGAGG TAGGAGAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19237124-19237244 1.8e-05 17_[+2]_95 chr2L:17227186-17227306 1.8e-05 76_[+2]_36 chr2R:19819688-19819808 1.8e-05 7_[+2]_105 chr3L:2877040-2877160 1.8e-05 99_[+2]_13 chr2L:845819-845939 1.8e-05 78_[+2]_34 chr2L:5055760-5055880 1.8e-05 68_[+2]_44 chr2R:11984539-11984659 1.8e-05 87_[+2]_25 chrX:8660488-8660608 1.8e-05 108_[+2]_4 chr3L:4189236-4189356 1.8e-05 76_[+2]_36 chr3L:15147551-15147671 1.8e-05 68_[+2]_44 chr3L:10670997-10671117 5.6e-05 11_[+2]_101 chr3R:30653620-30653740 5.6e-05 23_[+2]_89 chr3R:29322340-29322460 5.6e-05 8_[+2]_104 chrX:601500-601620 5.6e-05 78_[+2]_34 chr3R:26933915-26934035 5.6e-05 94_[+2]_18 chr3R:26795765-26795885 5.6e-05 52_[+2]_60 chr2L:6847579-6847699 5.6e-05 30_[+2]_82 chrX:18920141-18920261 5.6e-05 106_[+2]_6 chr3R:4999764-4999884 5.6e-05 57_[+2]_55 chrX:22851444-22851564 5.6e-05 88_[+2]_24 chr2R:13343636-13343756 5.6e-05 78_[+2]_34 chr2L:18896487-18896607 5.6e-05 27_[+2]_85 chr3L:15178461-15178581 5.6e-05 30_[+2]_82 chrX:19159028-19159148 5.6e-05 112_[+2] chr2R:22673434-22673554 5.6e-05 60_[+2]_52 chrX:10533996-10534116 5.6e-05 112_[+2] chrX:17817163-17817283 5.6e-05 45_[+2]_67 chrX:3368416-3368536 5.6e-05 22_[+2]_90 chrX:19792797-19792917 5.6e-05 17_[+2]_95 chrX:4599648-4599768 5.6e-05 24_[+2]_88 chr3L:9477804-9477924 5.6e-05 9_[+2]_103 chr2L:14145629-14145749 5.6e-05 52_[+2]_60 chr2R:14028095-14028215 5.6e-05 88_[+2]_24 chr2R:17998540-17998660 5.6e-05 70_[+2]_42 chr2L:1128455-1128575 5.6e-05 26_[+2]_86 chr3L:15253285-15253405 5.6e-05 79_[+2]_33 chrX:7264653-7264773 5.6e-05 29_[+2]_83 chrX:19795963-19796083 5.6e-05 23_[+2]_89 chrX:18575310-18575430 7.2e-05 48_[+2]_64 chr3R:15130111-15130231 7.2e-05 51_[+2]_61 chrX:1564339-1564459 7.2e-05 76_[+2]_36 chr3R:9171335-9171455 7.2e-05 108_[+2]_4 chr2R:8052753-8052873 0.00011 73_[+2]_39 chr3R:31717947-31718067 0.00011 67_[+2]_45 chr3R:4664176-4664296 0.00011 42_[+2]_70 chr3R:16522180-16522300 0.00011 15_[+2]_97 chr2L:16381165-16381285 0.00011 86_[+2]_26 chr3R:6977276-6977396 0.00011 32_[+2]_80 chr3L:10247257-10247377 0.00011 102_[+2]_10 chrX:20499941-20500061 0.00011 63_[+2]_49 chr3R:24813486-24813606 0.00011 36_[+2]_76 chr3R:5032450-5032570 0.00011 25_[+2]_87 chr2R:24309497-24309617 0.00012 81_[+2]_31 chrX:18916379-18916499 0.00012 106_[+2]_6 chrX:5284897-5285017 0.00012 101_[+2]_11 chr3L:10335928-10336048 0.00018 32_[+2]_80 chrX:8726899-8727019 0.00018 28_[+2]_84 chr3R:8110711-8110831 0.00018 23_[+2]_89 chrX:2970480-2970600 0.00018 55_[+2]_57 chr3R:10618988-10619108 0.00018 92_[+2]_20 chr3R:8813630-8813750 0.00018 54_[+2]_58 chr3R:25152919-25153039 0.00018 52_[+2]_60 chr3R:22251482-22251602 0.00018 45_[+2]_67 chrX:17503446-17503566 0.00018 79_[+2]_33 chr3R:21341260-21341380 0.00018 30_[+2]_82 chr2R:11094984-11095104 0.00018 1_[+2]_111 chr3L:11284027-11284147 0.00019 61_[+2]_51 chr2R:23592531-23592651 0.00019 15_[+2]_97 chrX:19010361-19010481 0.00019 98_[+2]_14 chr2R:22675827-22675947 0.00019 70_[+2]_42 chr2R:15895482-15895602 0.00019 89_[+2]_23 chr3L:17176343-17176463 0.00023 58_[+2]_54 chrX:7094367-7094487 0.00023 48_[+2]_64 chr3R:22150627-22150747 0.00023 77_[+2]_35 chr3L:5388758-5388878 0.00023 89_[+2]_23 chr3L:1062624-1062744 0.00023 31_[+2]_81 chrX:19793742-19793862 0.00023 96_[+2]_16 chr2R:18315434-18315554 0.00026 96_[+2]_16 chr2R:7689054-7689174 0.00026 75_[+2]_37 chr2L:2483935-2484055 0.00026 94_[+2]_18 chr2R:23577862-23577982 0.00026 51_[+2]_61 chr3L:11310160-11310280 0.00026 105_[+2]_7 chr3R:20284041-20284161 0.00026 112_[+2] chr3R:12272255-12272375 0.00026 81_[+2]_31 chr3L:7995421-7995541 0.00035 90_[+2]_22 chr2R:20911435-20911555 0.00035 7_[+2]_105 chr3R:16561766-16561886 0.00035 98_[+2]_14 chr2L:13555530-13555650 0.00035 30_[+2]_82 chr3R:31884443-31884563 0.00035 63_[+2]_49 chrX:1382578-1382698 0.00035 38_[+2]_74 chr2R:21534529-21534649 0.00035 33_[+2]_79 chrX:19554196-19554316 0.00035 90_[+2]_22 chrX:11500411-11500531 0.00035 106_[+2]_6 chr2R:6984908-6985028 0.00035 23_[+2]_89 chr2R:19794881-19795001 0.00037 60_[+2]_52 chrX:1588686-1588806 0.00037 11_[+2]_101 chr3L:22608045-22608165 0.00037 65_[+2]_47 chr2R:23149512-23149632 0.00038 93_[+2]_19 chr3R:27610695-27610815 0.00041 34_[+2]_78 chr3R:16560478-16560598 0.00041 66_[+2]_46 chr3R:16570326-16570446 0.00045 6_[+2]_106 chr3L:12456816-12456936 0.00045 89_[+2]_23 chr2L:8577508-8577628 0.0005 56_[+2]_56 chr2R:22867773-22867893 0.0005 29_[+2]_83 chrX:16798291-16798411 0.0005 97_[+2]_15 chr3L:3963567-3963687 0.0005 83_[+2]_29 chr2R:7433167-7433287 0.00055 56_[+2]_56 chr3L:7018985-7019105 0.00055 92_[+2]_20 chr2R:8246942-8247062 0.00058 21_[+2]_91 chrX:13208607-13208727 0.00058 92_[+2]_20 chr2L:17267486-17267606 0.00062 2_[+2]_110 chr2L:6236366-6236486 0.00072 29_[+2]_83 chrX:7476869-7476989 0.00072 59_[+2]_53 chr3R:30224773-30224893 0.00072 68_[+2]_44 chr3R:31310413-31310533 0.00072 6_[+2]_106 chr3L:18191933-18192053 0.00081 23_[+2]_89 chr3L:15269531-15269651 0.00085 47_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGDGGGGG width=8 seqs=117 chr2L:19237124-19237244 ( 18) GGAGGGGG 1 chr2L:17227186-17227306 ( 77) GGAGGGGG 1 chr2R:19819688-19819808 ( 8) GGAGGGGG 1 chr3L:2877040-2877160 ( 100) GGAGGGGG 1 chr2L:845819-845939 ( 79) GGAGGGGG 1 chr2L:5055760-5055880 ( 69) GGAGGGGG 1 chr2R:11984539-11984659 ( 88) GGAGGGGG 1 chrX:8660488-8660608 ( 109) GGAGGGGG 1 chr3L:4189236-4189356 ( 77) GGAGGGGG 1 chr3L:15147551-15147671 ( 69) GGAGGGGG 1 chr3L:10670997-10671117 ( 12) GGGGGGGG 1 chr3R:30653620-30653740 ( 24) GGGGGGGG 1 chr3R:29322340-29322460 ( 9) GGGGGGGG 1 chrX:601500-601620 ( 79) GGTGGGGG 1 chr3R:26933915-26934035 ( 95) GGGGGGGG 1 chr3R:26795765-26795885 ( 53) GGTGGGGG 1 chr2L:6847579-6847699 ( 31) GGTGGGGG 1 chrX:18920141-18920261 ( 107) GGTGGGGG 1 chr3R:4999764-4999884 ( 58) GGGGGGGG 1 chrX:22851444-22851564 ( 89) GGTGGGGG 1 chr2R:13343636-13343756 ( 79) GGTGGGGG 1 chr2L:18896487-18896607 ( 28) GGTGGGGG 1 chr3L:15178461-15178581 ( 31) GGTGGGGG 1 chrX:19159028-19159148 ( 113) GGGGGGGG 1 chr2R:22673434-22673554 ( 61) GGGGGGGG 1 chrX:10533996-10534116 ( 113) GGTGGGGG 1 chrX:17817163-17817283 ( 46) GGTGGGGG 1 chrX:3368416-3368536 ( 23) GGTGGGGG 1 chrX:19792797-19792917 ( 18) GGTGGGGG 1 chrX:4599648-4599768 ( 25) GGTGGGGG 1 chr3L:9477804-9477924 ( 10) GGGGGGGG 1 chr2L:14145629-14145749 ( 53) GGTGGGGG 1 chr2R:14028095-14028215 ( 89) GGGGGGGG 1 chr2R:17998540-17998660 ( 71) GGTGGGGG 1 chr2L:1128455-1128575 ( 27) GGTGGGGG 1 chr3L:15253285-15253405 ( 80) GGGGGGGG 1 chrX:7264653-7264773 ( 30) GGTGGGGG 1 chrX:19795963-19796083 ( 24) GGGGGGGG 1 chrX:18575310-18575430 ( 49) GGAGTGGG 1 chr3R:15130111-15130231 ( 52) GGAGTGGG 1 chrX:1564339-1564459 ( 77) GGAGTGGG 1 chr3R:9171335-9171455 ( 109) GGAGTGGG 1 chr2R:8052753-8052873 ( 74) GGGGTGGG 1 chr3R:31717947-31718067 ( 68) GGTGTGGG 1 chr3R:4664176-4664296 ( 43) GGGGTGGG 1 chr3R:16522180-16522300 ( 16) GGTGTGGG 1 chr2L:16381165-16381285 ( 87) GGGGTGGG 1 chr3R:6977276-6977396 ( 33) GGGGTGGG 1 chr3L:10247257-10247377 ( 103) GGGGTGGG 1 chrX:20499941-20500061 ( 64) GGGGTGGG 1 chr3R:24813486-24813606 ( 37) GGGGTGGG 1 chr3R:5032450-5032570 ( 26) GGGGTGGG 1 chr2R:24309497-24309617 ( 82) GGAAGGGG 1 chrX:18916379-18916499 ( 107) GGAAGGGG 1 chrX:5284897-5285017 ( 102) GGAAGGGG 1 chr3L:10335928-10336048 ( 33) GGCGGGGG 1 chrX:8726899-8727019 ( 29) GGGAGGGG 1 chr3R:8110711-8110831 ( 24) GGTAGGGG 1 chrX:2970480-2970600 ( 56) GGTAGGGG 1 chr3R:10618988-10619108 ( 93) GGCGGGGG 1 chr3R:8813630-8813750 ( 55) GGGAGGGG 1 chr3R:25152919-25153039 ( 53) GGCGGGGG 1 chr3R:22251482-22251602 ( 46) GGCGGGGG 1 chrX:17503446-17503566 ( 80) GGCGGGGG 1 chr3R:21341260-21341380 ( 31) GGCGGGGG 1 chr2R:11094984-11095104 ( 2) GGTAGGGG 1 chr3L:11284027-11284147 ( 62) GGATGGGG 1 chr2R:23592531-23592651 ( 16) GGATGGGG 1 chrX:19010361-19010481 ( 99) GGATGGGG 1 chr2R:22675827-22675947 ( 71) GGATGGGG 1 chr2R:15895482-15895602 ( 90) GGATGGGG 1 chr3L:17176343-17176463 ( 59) GGGTGGGG 1 chrX:7094367-7094487 ( 49) GGGTGGGG 1 chr3R:22150627-22150747 ( 78) GGGTGGGG 1 chr3L:5388758-5388878 ( 90) GGTTGGGG 1 chr3L:1062624-1062744 ( 32) GGTTGGGG 1 chrX:19793742-19793862 ( 97) GGGTGGGG 1 chr2R:18315434-18315554 ( 97) GGAATGGG 1 chr2R:7689054-7689174 ( 76) GGAGGTGG 1 chr2L:2483935-2484055 ( 95) GGAGGTGG 1 chr2R:23577862-23577982 ( 52) GGAGGTGG 1 chr3L:11310160-11310280 ( 106) GGAATGGG 1 chr3R:20284041-20284161 ( 113) GGAATGGG 1 chr3R:12272255-12272375 ( 82) GGAGGTGG 1 chr3L:7995421-7995541 ( 91) GGGATGGG 1 chr2R:20911435-20911555 ( 8) GGGATGGG 1 chr3R:16561766-16561886 ( 99) GGTGGTGG 1 chr2L:13555530-13555650 ( 31) GGTGGTGG 1 chr3R:31884443-31884563 ( 64) GGCGTGGG 1 chrX:1382578-1382698 ( 39) GGGATGGG 1 chr2R:21534529-21534649 ( 34) GGTGGTGG 1 chrX:19554196-19554316 ( 91) GGGATGGG 1 chrX:11500411-11500531 ( 107) GGGATGGG 1 chr2R:6984908-6985028 ( 24) GGTGGTGG 1 chr2R:19794881-19795001 ( 61) GGCAGGGG 1 chrX:1588686-1588806 ( 12) GGCAGGGG 1 chr3L:22608045-22608165 ( 66) GGCAGGGG 1 chr2R:23149512-23149632 ( 94) GGATTGGG 1 chr3R:27610695-27610815 ( 35) GGTTTGGG 1 chr3R:16560478-16560598 ( 67) GGTTTGGG 1 chr3R:16570326-16570446 ( 7) GGAGGAGG 1 chr3L:12456816-12456936 ( 90) GGAGGAGG 1 chr2L:8577508-8577628 ( 57) GGGGGAGG 1 chr2R:22867773-22867893 ( 30) GGAGAGGG 1 chrX:16798291-16798411 ( 98) GGAGAGGG 1 chr3L:3963567-3963687 ( 84) GGGGGAGG 1 chr2R:7433167-7433287 ( 57) GGGGAGGG 1 chr3L:7018985-7019105 ( 93) GGTGAGGG 1 chr2R:8246942-8247062 ( 22) GGGGTTGG 1 chrX:13208607-13208727 ( 93) GGGGTTGG 1 chr2L:17267486-17267606 ( 3) GGAAGTGG 1 chr2L:6236366-6236486 ( 30) GGTCGGGG 1 chrX:7476869-7476989 ( 60) GGTCGGGG 1 chr3R:30224773-30224893 ( 69) GGGCGGGG 1 chr3R:31310413-31310533 ( 7) GGCATGGG 1 chr3L:18191933-18192053 ( 24) GGGTGTGG 1 chr3L:15269531-15269651 ( 48) GGAAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.6062 E= 4.0e-047 -1351 -1351 196 -1351 -1351 -1351 196 -1351 41 -152 29 23 -30 -339 135 -91 -276 -1351 148 4 -244 -1351 173 -123 -1351 -1351 196 -1351 -1351 -1351 196 -1351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 4.0e-047 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.307692 0.094017 0.316239 0.282051 0.188034 0.025641 0.658120 0.128205 0.034188 0.000000 0.717949 0.247863 0.042735 0.000000 0.854701 0.102564 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-2 regular expression -------------------------------------------------------------------------------- GG[GAT]G[GT]GGG -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMAYAA MEME-3 width = 8 sites = 33 llr = 297 E-value = 1.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a897a2aa pos.-specific C :213:5:: probability G :::::::: matrix T :::::3:: bits 2.1 * * ** 1.9 * * ** 1.7 * * * ** 1.5 * * * ** Relative 1.3 *** * ** Entropy 1.1 ***** ** (13.0 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAACAA consensus C C T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6921674-6921794 108 9.77e-06 TTCGAATGGG AAAAACAA CCCCG chr2R:18315434-18315554 3 9.77e-06 CC AAAAACAA TAATTACCCG chr2R:14439995-14440115 30 9.77e-06 GCCATTGCCG AAAAACAA GTAAGAAaca chrX:9120548-9120668 21 9.77e-06 acagaaaagg aaaaacaa CAGCGGGAAC chr3L:12456816-12456936 74 9.77e-06 CGGACAAAAC AAAAACAA CGTTGAATgg chrX:17503446-17503566 21 9.77e-06 CAACGGCGTG AAAAACAA ATTAATCAAT chr3L:10670997-10671117 1 1.85e-05 . AAAAATAA GGGGGGGGGG chr3R:30653620-30653740 99 1.85e-05 GGTACATGCG AAAAATAA AACCTATTAC chrX:7476869-7476989 49 1.85e-05 ACGGAACCCA AAAAATAA AGTGGTCGGG chr3R:8110711-8110831 46 1.85e-05 GGGGTGAACA AAAAATAA ACAATTTGTT chr2L:9972770-9972890 81 2.69e-05 AGAGACCGCA AAAAAAAA AGGTCGTCTG chr3R:6946013-6946133 93 2.69e-05 AGGGCAGCCA AAAAAAAA AGGAAACCCG chr3L:8108435-8108555 72 2.69e-05 agcaagcaac aaaaaaaa gaaagaaagc chr2L:14123210-14123330 112 2.69e-05 GCAATGTCGA AAAAAAAA A chr3L:10672625-10672745 113 2.69e-05 GGCAAAATAA AAAAAAAA chrX:7094367-7094487 84 3.82e-05 GGTCGCTCAG AAACACAA AAACCAGAAT chr3L:22608045-22608165 54 3.82e-05 ccaaagcaac aaacacaa CAGCGGCAGG chr2R:15895482-15895602 9 3.82e-05 AAATGACA AAACACAA ACATTAATTG chr2R:8236776-8236896 73 4.96e-05 AATTTAAATT ACAAACAA ACCGAAACGC chr2R:6599777-6599897 105 4.96e-05 GGGAAACCGA ACAAACAA GCAAGACC chrX:1382578-1382698 101 4.96e-05 AATGGATTAC ACAAACAA CCAGTAGGGC chr3L:6337555-6337675 49 5.98e-05 TTGTTGAGGA AAACATAA AAAATGCAAA chrX:19795963-19796083 61 5.98e-05 AGTGAAAGGG AAACATAA GTCCAACAAT chr2R:6602206-6602326 98 6.95e-05 AGTTGGTGGC AAACAAAA AGGGAAAAAT chr2R:22464671-22464791 83 6.95e-05 GCTGAAGAGC AAACAAAA ATGTTTTCAT chr3L:7995421-7995541 79 7.97e-05 ACACACACAC ACAAATAA GCGGGGGATG chr2R:22503305-22503425 55 1.03e-04 GATTGGACAC ACACACAA AGAGTGGAGT chr3R:25174750-25174870 1 1.03e-04 . acacacaa gcacacacgt chr2L:2483935-2484055 52 1.03e-04 CACGAACAGG ACACACAA GGAGTTGCCG chr3L:10247257-10247377 25 1.03e-04 CAAAGCAAAC ACACACAA GCACATCGAA chr2R:23149512-23149632 39 1.14e-04 CAACCGCAGG AACAACAA CTGTGACACG chr2R:22508501-22508621 25 1.47e-04 TTGGGCTCTA AACAATAA AGTGGGTTTA chrX:8726899-8727019 78 1.47e-04 CAAGAGCAAT AACAATAA ACGATAGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6921674-6921794 9.8e-06 107_[+3]_5 chr2R:18315434-18315554 9.8e-06 2_[+3]_110 chr2R:14439995-14440115 9.8e-06 29_[+3]_83 chrX:9120548-9120668 9.8e-06 20_[+3]_92 chr3L:12456816-12456936 9.8e-06 73_[+3]_39 chrX:17503446-17503566 9.8e-06 20_[+3]_92 chr3L:10670997-10671117 1.8e-05 [+3]_112 chr3R:30653620-30653740 1.8e-05 98_[+3]_14 chrX:7476869-7476989 1.8e-05 48_[+3]_64 chr3R:8110711-8110831 1.8e-05 45_[+3]_67 chr2L:9972770-9972890 2.7e-05 80_[+3]_32 chr3R:6946013-6946133 2.7e-05 92_[+3]_20 chr3L:8108435-8108555 2.7e-05 71_[+3]_41 chr2L:14123210-14123330 2.7e-05 111_[+3]_1 chr3L:10672625-10672745 2.7e-05 112_[+3] chrX:7094367-7094487 3.8e-05 83_[+3]_29 chr3L:22608045-22608165 3.8e-05 53_[+3]_59 chr2R:15895482-15895602 3.8e-05 8_[+3]_104 chr2R:8236776-8236896 5e-05 72_[+3]_40 chr2R:6599777-6599897 5e-05 104_[+3]_8 chrX:1382578-1382698 5e-05 100_[+3]_12 chr3L:6337555-6337675 6e-05 48_[+3]_64 chrX:19795963-19796083 6e-05 60_[+3]_52 chr2R:6602206-6602326 7e-05 97_[+3]_15 chr2R:22464671-22464791 7e-05 82_[+3]_30 chr3L:7995421-7995541 8e-05 78_[+3]_34 chr2R:22503305-22503425 0.0001 54_[+3]_58 chr3R:25174750-25174870 0.0001 [+3]_112 chr2L:2483935-2484055 0.0001 51_[+3]_61 chr3L:10247257-10247377 0.0001 24_[+3]_88 chr2R:23149512-23149632 0.00011 38_[+3]_74 chr2R:22508501-22508621 0.00015 24_[+3]_88 chrX:8726899-8727019 0.00015 77_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMAYAA width=8 seqs=33 chr3R:6921674-6921794 ( 108) AAAAACAA 1 chr2R:18315434-18315554 ( 3) AAAAACAA 1 chr2R:14439995-14440115 ( 30) AAAAACAA 1 chrX:9120548-9120668 ( 21) AAAAACAA 1 chr3L:12456816-12456936 ( 74) AAAAACAA 1 chrX:17503446-17503566 ( 21) AAAAACAA 1 chr3L:10670997-10671117 ( 1) AAAAATAA 1 chr3R:30653620-30653740 ( 99) AAAAATAA 1 chrX:7476869-7476989 ( 49) AAAAATAA 1 chr3R:8110711-8110831 ( 46) AAAAATAA 1 chr2L:9972770-9972890 ( 81) AAAAAAAA 1 chr3R:6946013-6946133 ( 93) AAAAAAAA 1 chr3L:8108435-8108555 ( 72) AAAAAAAA 1 chr2L:14123210-14123330 ( 112) AAAAAAAA 1 chr3L:10672625-10672745 ( 113) AAAAAAAA 1 chrX:7094367-7094487 ( 84) AAACACAA 1 chr3L:22608045-22608165 ( 54) AAACACAA 1 chr2R:15895482-15895602 ( 9) AAACACAA 1 chr2R:8236776-8236896 ( 73) ACAAACAA 1 chr2R:6599777-6599897 ( 105) ACAAACAA 1 chrX:1382578-1382698 ( 101) ACAAACAA 1 chr3L:6337555-6337675 ( 49) AAACATAA 1 chrX:19795963-19796083 ( 61) AAACATAA 1 chr2R:6602206-6602326 ( 98) AAACAAAA 1 chr2R:22464671-22464791 ( 83) AAACAAAA 1 chr3L:7995421-7995541 ( 79) ACAAATAA 1 chr2R:22503305-22503425 ( 55) ACACACAA 1 chr3R:25174750-25174870 ( 1) ACACACAA 1 chr2L:2483935-2484055 ( 52) ACACACAA 1 chr3L:10247257-10247377 ( 25) ACACACAA 1 chr2R:23149512-23149632 ( 39) AACAACAA 1 chr2R:22508501-22508621 ( 25) AACAATAA 1 chrX:8726899-8727019 ( 78) AACAATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.1e-004 211 -1169 -1169 -1169 171 -16 -1169 -1169 197 -157 -1169 -1169 153 30 -1169 -1169 211 -1169 -1169 -1169 -13 93 -1169 18 211 -1169 -1169 -1169 211 -1169 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.1e-004 1.000000 0.000000 0.000000 0.000000 0.757576 0.242424 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.212121 0.515152 0.000000 0.272727 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAYAA MEME-3 regular expression -------------------------------------------------------------------------------- A[AC]A[AC]A[CTA]AA -------------------------------------------------------------------------------- Time 19.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTGTTK MEME-4 width = 8 sites = 50 llr = 415 E-value = 5.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :::::::: probability G :31:7:24 matrix T a79a:a86 bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * ** * Relative 1.3 * ** ** Entropy 1.1 **** ** (12.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus G A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11615528-11615648 54 1.22e-05 AGCTCACCTT TTTTGTTT GTTTAAACTG chr3R:9882044-9882164 91 1.22e-05 ACAATTTTGA TTTTGTTT TGCGCCCATT chr3L:6018799-6018919 112 1.22e-05 cacttgccgt ttttgttt a chrX:3383918-3384038 21 1.22e-05 GTCTCCGCCT TTTTGTTT TGCTTTGCTG chr2L:6249566-6249686 39 1.22e-05 AGCCTTTGAA TTTTGTTT TTCCCCACCC chr3R:8813630-8813750 102 1.22e-05 CAATTGTTTG TTTTGTTT GAGTTTTAAC chr2R:18354681-18354801 102 1.22e-05 CGCTCCACTG TTTTGTTT ATCGCTCATC chr3R:20284041-20284161 86 1.22e-05 AGCGCACTTT TTTTGTTT TTGGTTTCAG chr3L:8540532-8540652 34 1.22e-05 TCGGCATTAG TTTTGTTT ACAAACTTTC chr2R:24741346-24741466 2 2.52e-05 C TTTTGTTG GTAGCTATCG chrX:11500411-11500531 51 2.52e-05 GTCCTATTCC TTTTGTTG ATAAAGCTGC chr2R:22508501-22508621 9 3.62e-05 GGGGATTA TTTTATTT GGGCTCTAAA chr3R:16876781-16876901 40 3.62e-05 TTTGATTTCA TTTTATTT ATAGCACACT chr2L:17227186-17227306 2 3.62e-05 A TTTTATTT TACATTTTCC chr2L:13555530-13555650 51 3.62e-05 CGGCGTTGGC TTTTATTT TTATTGTGTC chr2L:12621749-12621869 108 3.62e-05 TTCTGAAAAA TTTTATTT TATTT chr3L:13289887-13290007 8 3.62e-05 CTCCTTA TTTTATTT TTAAATTTGT chr3R:24813486-24813606 19 4.92e-05 GAGTTCTTGT TGTTGTTT TATGCGTAGT chr3L:9477804-9477924 96 4.92e-05 GTCGTGGCGT TGTTGTTT TCCTCGACGA chr3L:11477719-11477839 58 4.92e-05 GCTTGTGTTG TGTTGTTT CCTTTGCATT chrX:18920141-18920261 4 6.09e-05 TAT TTTTATTG CTCGTCGGAC chrX:19843469-19843589 91 6.09e-05 CGGACAAATT TTTTATTG CAGCCCAATC chr2R:15102674-15102794 59 7.49e-05 TCACCgttct tgttgttg ttgttcctgt chrX:1507244-1507364 77 7.49e-05 ctgttgttgt tgttgttg ttgttgtccc chr3R:4999764-4999884 82 7.49e-05 GAGGAGGGGT TGTTGTTG GGGCTTCGGC chr3L:22583862-22583982 77 7.49e-05 CCAttgtggt tgttgttg tagtggttgt chr3L:13401624-13401744 33 7.49e-05 TGCCACCAAC TGTTGTTG GCTCAGGAAT chrX:7157722-7157842 106 7.49e-05 ttgttgttgt tgttgttg ttAGAAA chr3R:24944471-24944591 5 7.49e-05 CATT Tgttgttg ccgtggtcgt chr2R:24327392-24327512 36 7.49e-05 TTGCTCTGTC TGTTGTTG TTCCTGCAGC chr2L:19145284-19145404 111 9.97e-05 AGGCTGCTTT TTTTGTGT TC chr2R:15131662-15131782 106 9.97e-05 ATGTGGTTGT TGTTATTT TTTTTAA chr3L:8108435-8108555 47 9.97e-05 CAACATTCAT TGTTATTT ATTACcaagc chr3L:10672625-10672745 69 9.97e-05 AGATACACAT TTTTGTGT TAGGGCAAAA chr3L:15275217-15275337 8 9.97e-05 TTGTCTA TTTTGTGT GCCACGTTAA chr2L:19376798-19376918 94 1.26e-04 GGTCTGAGGG TTTTGTGG TGCGACCGCA chr3L:17176343-17176463 30 1.51e-04 GTTGCCGTGG TTGTGTTT TCCGCGGGGG chr2R:22464671-22464791 27 1.51e-04 CCCTGGGTGC TTGTGTTT GTGTGTCCCC chr2L:14145629-14145749 17 1.51e-04 GCTTCGGGGA TTGTGTTT AAGGGGGTGG chr3L:12636636-12636756 100 1.76e-04 AACATTCGAT TTTTTTTT GGGGGGGATG chr3R:6921674-6921794 79 2.16e-04 CTCGATTCTT TTTTGTTC CATCCATGGC chr3R:29322340-29322460 92 2.16e-04 ACCAGAAAAG TTTTGTTC TAAGCTTTTG chr2R:6599777-6599897 26 2.16e-04 GAGAAGCCCT TTTTATGG TGCAACAAAT chrX:9120548-9120668 64 2.16e-04 ATGAGAAACC TTTTATGG CACAAACACA chrX:19010361-19010481 49 2.16e-04 TTTAATGCTG TTTTATGG CATTTCGTGG chr3R:5032450-5032570 38 2.16e-04 ggtgggtggg ttgtgttg ggtggctttg chr3L:17460835-17460955 99 2.43e-04 GGCATCGTTT TTGTATTT CTGTGGGCAA chr3R:24610190-24610310 101 2.43e-04 TGGGCTGCTG TGTTGTGG GCTTGTCTAA chr2L:17267486-17267606 40 2.82e-04 CGACAGGGTG TGTTATGT CTCTGTGTAC chr3R:7282734-7282854 113 2.82e-04 CCTGCCACCA TTTTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11615528-11615648 1.2e-05 53_[+4]_59 chr3R:9882044-9882164 1.2e-05 90_[+4]_22 chr3L:6018799-6018919 1.2e-05 111_[+4]_1 chrX:3383918-3384038 1.2e-05 20_[+4]_92 chr2L:6249566-6249686 1.2e-05 38_[+4]_74 chr3R:8813630-8813750 1.2e-05 101_[+4]_11 chr2R:18354681-18354801 1.2e-05 101_[+4]_11 chr3R:20284041-20284161 1.2e-05 85_[+4]_27 chr3L:8540532-8540652 1.2e-05 33_[+4]_79 chr2R:24741346-24741466 2.5e-05 1_[+4]_111 chrX:11500411-11500531 2.5e-05 50_[+4]_62 chr2R:22508501-22508621 3.6e-05 8_[+4]_104 chr3R:16876781-16876901 3.6e-05 39_[+4]_73 chr2L:17227186-17227306 3.6e-05 1_[+4]_111 chr2L:13555530-13555650 3.6e-05 50_[+4]_62 chr2L:12621749-12621869 3.6e-05 107_[+4]_5 chr3L:13289887-13290007 3.6e-05 7_[+4]_105 chr3R:24813486-24813606 4.9e-05 18_[+4]_94 chr3L:9477804-9477924 4.9e-05 95_[+4]_17 chr3L:11477719-11477839 4.9e-05 57_[+4]_55 chrX:18920141-18920261 6.1e-05 3_[+4]_109 chrX:19843469-19843589 6.1e-05 90_[+4]_22 chr2R:15102674-15102794 7.5e-05 58_[+4]_54 chrX:1507244-1507364 7.5e-05 76_[+4]_36 chr3R:4999764-4999884 7.5e-05 81_[+4]_31 chr3L:22583862-22583982 7.5e-05 76_[+4]_36 chr3L:13401624-13401744 7.5e-05 32_[+4]_80 chrX:7157722-7157842 7.5e-05 105_[+4]_7 chr3R:24944471-24944591 7.5e-05 4_[+4]_108 chr2R:24327392-24327512 7.5e-05 35_[+4]_77 chr2L:19145284-19145404 0.0001 110_[+4]_2 chr2R:15131662-15131782 0.0001 105_[+4]_7 chr3L:8108435-8108555 0.0001 46_[+4]_66 chr3L:10672625-10672745 0.0001 68_[+4]_44 chr3L:15275217-15275337 0.0001 7_[+4]_105 chr2L:19376798-19376918 0.00013 93_[+4]_19 chr3L:17176343-17176463 0.00015 29_[+4]_83 chr2R:22464671-22464791 0.00015 26_[+4]_86 chr2L:14145629-14145749 0.00015 16_[+4]_96 chr3L:12636636-12636756 0.00018 99_[+4]_13 chr3R:6921674-6921794 0.00022 78_[+4]_34 chr3R:29322340-29322460 0.00022 91_[+4]_21 chr2R:6599777-6599897 0.00022 25_[+4]_87 chrX:9120548-9120668 0.00022 63_[+4]_49 chrX:19010361-19010481 0.00022 48_[+4]_64 chr3R:5032450-5032570 0.00022 37_[+4]_75 chr3L:17460835-17460955 0.00024 98_[+4]_14 chr3R:24610190-24610310 0.00024 100_[+4]_12 chr2L:17267486-17267606 0.00028 39_[+4]_73 chr3R:7282734-7282854 0.00028 112_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTGTTK width=8 seqs=50 chr2R:11615528-11615648 ( 54) TTTTGTTT 1 chr3R:9882044-9882164 ( 91) TTTTGTTT 1 chr3L:6018799-6018919 ( 112) TTTTGTTT 1 chrX:3383918-3384038 ( 21) TTTTGTTT 1 chr2L:6249566-6249686 ( 39) TTTTGTTT 1 chr3R:8813630-8813750 ( 102) TTTTGTTT 1 chr2R:18354681-18354801 ( 102) TTTTGTTT 1 chr3R:20284041-20284161 ( 86) TTTTGTTT 1 chr3L:8540532-8540652 ( 34) TTTTGTTT 1 chr2R:24741346-24741466 ( 2) TTTTGTTG 1 chrX:11500411-11500531 ( 51) TTTTGTTG 1 chr2R:22508501-22508621 ( 9) TTTTATTT 1 chr3R:16876781-16876901 ( 40) TTTTATTT 1 chr2L:17227186-17227306 ( 2) TTTTATTT 1 chr2L:13555530-13555650 ( 51) TTTTATTT 1 chr2L:12621749-12621869 ( 108) TTTTATTT 1 chr3L:13289887-13290007 ( 8) TTTTATTT 1 chr3R:24813486-24813606 ( 19) TGTTGTTT 1 chr3L:9477804-9477924 ( 96) TGTTGTTT 1 chr3L:11477719-11477839 ( 58) TGTTGTTT 1 chrX:18920141-18920261 ( 4) TTTTATTG 1 chrX:19843469-19843589 ( 91) TTTTATTG 1 chr2R:15102674-15102794 ( 59) TGTTGTTG 1 chrX:1507244-1507364 ( 77) TGTTGTTG 1 chr3R:4999764-4999884 ( 82) TGTTGTTG 1 chr3L:22583862-22583982 ( 77) TGTTGTTG 1 chr3L:13401624-13401744 ( 33) TGTTGTTG 1 chrX:7157722-7157842 ( 106) TGTTGTTG 1 chr3R:24944471-24944591 ( 5) TGTTGTTG 1 chr2R:24327392-24327512 ( 36) TGTTGTTG 1 chr2L:19145284-19145404 ( 111) TTTTGTGT 1 chr2R:15131662-15131782 ( 106) TGTTATTT 1 chr3L:8108435-8108555 ( 47) TGTTATTT 1 chr3L:10672625-10672745 ( 69) TTTTGTGT 1 chr3L:15275217-15275337 ( 8) TTTTGTGT 1 chr2L:19376798-19376918 ( 94) TTTTGTGG 1 chr3L:17176343-17176463 ( 30) TTGTGTTT 1 chr2R:22464671-22464791 ( 27) TTGTGTTT 1 chr2L:14145629-14145749 ( 17) TTGTGTTT 1 chr3L:12636636-12636756 ( 100) TTTTTTTT 1 chr3R:6921674-6921794 ( 79) TTTTGTTC 1 chr3R:29322340-29322460 ( 92) TTTTGTTC 1 chr2R:6599777-6599897 ( 26) TTTTATGG 1 chrX:9120548-9120668 ( 64) TTTTATGG 1 chrX:19010361-19010481 ( 49) TTTTATGG 1 chr3R:5032450-5032570 ( 38) TTGTGTTG 1 chr3L:17460835-17460955 ( 99) TTGTATTT 1 chr3R:24610190-24610310 ( 101) TGTTGTGG 1 chr2L:17267486-17267606 ( 40) TGTTATGT 1 chr3R:7282734-7282854 ( 113) TTTTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 5.3e-007 -1229 -1229 -1229 205 -1229 -1229 22 154 -1229 -1229 -137 190 -1229 -1229 -1229 205 37 -1229 136 -259 -1229 -1229 -1229 205 -1229 -1229 -52 177 -1229 -275 56 127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 5.3e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.300000 0.000000 0.660000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.180000 0.820000 0.000000 0.040000 0.380000 0.580000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGTTK MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]TT[GA]TT[TG] -------------------------------------------------------------------------------- Time 25.32 secs. ******************************************************************************** ******************************************************************************** MOTIF KBGGAAAA MEME-5 width = 8 sites = 51 llr = 413 E-value = 1.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:::8aaa pos.-specific C 22:::::: probability G 349a2::: matrix T 441::::: bits 2.1 *** 1.9 * *** 1.7 * *** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (11.7 bits) 0.8 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TTGGAAAA consensus GG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23325897-23326017 104 1.12e-05 GGTGGCTGTG TTGGAAAA TACAGTAGC chr3R:13897278-13897398 80 1.12e-05 CTCCGCTCTT TTGGAAAA TTTAAATTTT chr2R:8246942-8247062 30 1.12e-05 AGGGGGTTGG TTGGAAAA CCGAGCCGAC chr3R:29322340-29322460 20 1.12e-05 GGGGGGGTTC TTGGAAAA GGGGGCGGGG chr3L:21860125-21860245 41 1.12e-05 CCTTCCCCAT TTGGAAAA TTCAAATTTG chr2L:5055760-5055880 23 1.12e-05 CCATCTTGGA TTGGAAAA GCAGTGGCGG chr2R:22675827-22675947 21 2.32e-05 TGAAAGGGAA GTGGAAAA ATGTGTAAAG chr2R:13627150-13627270 39 2.32e-05 ccgccGACGG GTGGAAAA AAGCAGAGAA chrX:601500-601620 44 3.52e-05 GGTGGAGGGG TGGGAAAA GCGGTGGGTG chr3R:26933915-26934035 23 3.52e-05 GTACCCCGTT TGGGAAAA ATGGGTTATC chr3R:26795765-26795885 16 3.52e-05 AACGCCGAAA TGGGAAAA CGGAAAAGGG chr3R:16520583-16520703 75 3.52e-05 GGATGGGTGC TGGGAAAA CTGGCACTAT chr3L:7995421-7995541 109 4.80e-05 AAAATCGAGT GGGGAAAA ACTC chr3L:10335928-10336048 57 4.80e-05 AAACCAGACA GGGGAAAA ATGAATTATG chrX:10533996-10534116 98 4.80e-05 aaaagggaaa ggggaaaa agggacaggt chr3L:1062624-1062744 19 4.80e-05 TGGGCGGTTG GGGGAAAA Cggtgggttg chr3L:17176343-17176463 67 6.06e-05 GTGGGTGGGG TCGGAAAA TGGGGGCGGG chr3L:22583862-22583982 35 6.06e-05 AGCAATTCGC TCGGAAAA GTTGCTCCTT chr2L:18896487-18896607 44 6.06e-05 GGTGGGGAGG TCGGAAAA TGGGGTGGGG chrX:10548786-10548906 43 6.06e-05 TGCCACCCCT TCGGAAAA ACCCCCTCCC chr3R:22251482-22251602 25 7.40e-05 TGGGCTCAGG GCGGAAAA ACCTGGTGTG chr3L:3963567-3963687 97 7.40e-05 GGAGGGCTGG GCGGAAAA GCTTCCATTG chrX:10822242-10822362 47 8.65e-05 CAAAGCAAGG CTGGAAAA ACActccctc chr3L:17441922-17442042 30 8.65e-05 CCGACTGTAA CTGGAAAA TAATAATTTT chr3R:10618988-10619108 55 8.65e-05 ATTGATTGCC CTGGAAAA CCACTTGAAA chr3L:1094556-1094676 59 8.65e-05 CCGAGAAACC CTGGAAAA GCGGGCAGCA chr2L:17534106-17534226 16 8.65e-05 TTCCGGGATC CTGGAAAA TTCTAaccca chr2R:6602206-6602326 1 9.73e-05 . ATGGAAAA TTGTAACACA chr3L:5388758-5388878 16 9.73e-05 TATGACCAAC ATGGAAAA TGGCGTTTTT chrX:7278149-7278269 52 1.11e-04 AACATGGCAA CGGGAAAA CGGACAACAG chr2L:2930780-2930900 95 1.11e-04 GTCACTTGGC CGGGAAAA CATGGCCAAA chr2L:4128609-4128729 113 1.22e-04 GACAACCGAA AGGGAAAA chr3L:11284027-11284147 8 1.35e-04 GAATGGG TTGGGAAA TGGGGTTGCC chr3R:16875681-16875801 33 1.35e-04 CCTTCCCCTT TTGGGAAA CCCACGGTGG chr2R:8052753-8052873 91 1.59e-04 GGTGTGGAGG TTTGAAAA GGAAGTGGGA chrX:17503446-17503566 100 1.59e-04 gtggcggagg ccggaAAA GTGGGCGGGG chr2R:6599777-6599897 93 1.85e-04 CCAACGCAAA GTGGGAAA CCGAACAAAC chr2R:13091937-13092057 73 1.85e-04 AGCGACGACG ACGGAAAA AATTACCCCA chr3L:15269531-15269651 18 1.85e-04 TATTGACTCA ACGGAAAA TACGGACATT chrX:7264653-7264773 12 1.85e-04 TGGGTAGGGG GTGGGAAA TGATAGGAAT chrX:7476869-7476989 113 2.09e-04 AGGTTCATGC GTTGAAAA chrX:18916379-18916499 29 2.09e-04 GCAAGTCAAG TGGGGAAA CAATGGGAAT chr3L:1091803-1091923 10 2.20e-04 CGCACTAGG TGTGAAAA TACATGTCAT chr2L:13555530-13555650 4 2.35e-04 TGG GGGGGAAA GGTCGATGAT chr3R:4999764-4999884 106 2.35e-04 CGGCTGGTGT GGGGGAAA GGGAAAG chrX:22851444-22851564 35 2.35e-04 GGACAGAGGC GGGGGAAA CGCGCCGCTG chr3L:15147551-15147671 95 2.35e-04 GCGGTGGTGT GGGGGAAA GGCAGTAACG chr2L:12621749-12621869 99 2.72e-04 GCTGGGTGAT TCTGAAAA ATTTTATTTT chr3R:6946013-6946133 76 3.14e-04 TGGTTTCGAA GCTGAAAA GGGCAGCCAA chrX:19793742-19793862 108 3.14e-04 GGTGGGGTTT GCTGAAAA TCGGG chr3L:17460835-17460955 11 3.99e-04 TGTATGCTAA AGTGAAAA GTAGTAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23325897-23326017 1.1e-05 103_[+5]_9 chr3R:13897278-13897398 1.1e-05 79_[+5]_33 chr2R:8246942-8247062 1.1e-05 29_[+5]_83 chr3R:29322340-29322460 1.1e-05 19_[+5]_93 chr3L:21860125-21860245 1.1e-05 40_[+5]_72 chr2L:5055760-5055880 1.1e-05 22_[+5]_90 chr2R:22675827-22675947 2.3e-05 20_[+5]_92 chr2R:13627150-13627270 2.3e-05 38_[+5]_74 chrX:601500-601620 3.5e-05 43_[+5]_69 chr3R:26933915-26934035 3.5e-05 22_[+5]_90 chr3R:26795765-26795885 3.5e-05 15_[+5]_97 chr3R:16520583-16520703 3.5e-05 74_[+5]_38 chr3L:7995421-7995541 4.8e-05 108_[+5]_4 chr3L:10335928-10336048 4.8e-05 56_[+5]_56 chrX:10533996-10534116 4.8e-05 97_[+5]_15 chr3L:1062624-1062744 4.8e-05 18_[+5]_94 chr3L:17176343-17176463 6.1e-05 66_[+5]_46 chr3L:22583862-22583982 6.1e-05 34_[+5]_78 chr2L:18896487-18896607 6.1e-05 43_[+5]_69 chrX:10548786-10548906 6.1e-05 42_[+5]_70 chr3R:22251482-22251602 7.4e-05 24_[+5]_88 chr3L:3963567-3963687 7.4e-05 96_[+5]_16 chrX:10822242-10822362 8.7e-05 46_[+5]_66 chr3L:17441922-17442042 8.7e-05 29_[+5]_83 chr3R:10618988-10619108 8.7e-05 54_[+5]_58 chr3L:1094556-1094676 8.7e-05 58_[+5]_54 chr2L:17534106-17534226 8.7e-05 15_[+5]_97 chr2R:6602206-6602326 9.7e-05 [+5]_112 chr3L:5388758-5388878 9.7e-05 15_[+5]_97 chrX:7278149-7278269 0.00011 51_[+5]_61 chr2L:2930780-2930900 0.00011 94_[+5]_18 chr2L:4128609-4128729 0.00012 112_[+5] chr3L:11284027-11284147 0.00013 7_[+5]_105 chr3R:16875681-16875801 0.00013 32_[+5]_80 chr2R:8052753-8052873 0.00016 90_[+5]_22 chrX:17503446-17503566 0.00016 99_[+5]_13 chr2R:6599777-6599897 0.00018 92_[+5]_20 chr2R:13091937-13092057 0.00018 72_[+5]_40 chr3L:15269531-15269651 0.00018 17_[+5]_95 chrX:7264653-7264773 0.00018 11_[+5]_101 chrX:7476869-7476989 0.00021 112_[+5] chrX:18916379-18916499 0.00021 28_[+5]_84 chr3L:1091803-1091923 0.00022 9_[+5]_103 chr2L:13555530-13555650 0.00023 3_[+5]_109 chr3R:4999764-4999884 0.00023 105_[+5]_7 chrX:22851444-22851564 0.00023 34_[+5]_78 chr3L:15147551-15147671 0.00023 94_[+5]_18 chr2L:12621749-12621869 0.00027 98_[+5]_14 chr3R:6946013-6946133 0.00031 75_[+5]_37 chrX:19793742-19793862 0.00031 107_[+5]_5 chr3L:17460835-17460955 0.0004 10_[+5]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KBGGAAAA width=8 seqs=51 chr3R:23325897-23326017 ( 104) TTGGAAAA 1 chr3R:13897278-13897398 ( 80) TTGGAAAA 1 chr2R:8246942-8247062 ( 30) TTGGAAAA 1 chr3R:29322340-29322460 ( 20) TTGGAAAA 1 chr3L:21860125-21860245 ( 41) TTGGAAAA 1 chr2L:5055760-5055880 ( 23) TTGGAAAA 1 chr2R:22675827-22675947 ( 21) GTGGAAAA 1 chr2R:13627150-13627270 ( 39) GTGGAAAA 1 chrX:601500-601620 ( 44) TGGGAAAA 1 chr3R:26933915-26934035 ( 23) TGGGAAAA 1 chr3R:26795765-26795885 ( 16) TGGGAAAA 1 chr3R:16520583-16520703 ( 75) TGGGAAAA 1 chr3L:7995421-7995541 ( 109) GGGGAAAA 1 chr3L:10335928-10336048 ( 57) GGGGAAAA 1 chrX:10533996-10534116 ( 98) GGGGAAAA 1 chr3L:1062624-1062744 ( 19) GGGGAAAA 1 chr3L:17176343-17176463 ( 67) TCGGAAAA 1 chr3L:22583862-22583982 ( 35) TCGGAAAA 1 chr2L:18896487-18896607 ( 44) TCGGAAAA 1 chrX:10548786-10548906 ( 43) TCGGAAAA 1 chr3R:22251482-22251602 ( 25) GCGGAAAA 1 chr3L:3963567-3963687 ( 97) GCGGAAAA 1 chrX:10822242-10822362 ( 47) CTGGAAAA 1 chr3L:17441922-17442042 ( 30) CTGGAAAA 1 chr3R:10618988-10619108 ( 55) CTGGAAAA 1 chr3L:1094556-1094676 ( 59) CTGGAAAA 1 chr2L:17534106-17534226 ( 16) CTGGAAAA 1 chr2R:6602206-6602326 ( 1) ATGGAAAA 1 chr3L:5388758-5388878 ( 16) ATGGAAAA 1 chrX:7278149-7278269 ( 52) CGGGAAAA 1 chr2L:2930780-2930900 ( 95) CGGGAAAA 1 chr2L:4128609-4128729 ( 113) AGGGAAAA 1 chr3L:11284027-11284147 ( 8) TTGGGAAA 1 chr3R:16875681-16875801 ( 33) TTGGGAAA 1 chr2R:8052753-8052873 ( 91) TTTGAAAA 1 chrX:17503446-17503566 ( 100) CCGGAAAA 1 chr2R:6599777-6599897 ( 93) GTGGGAAA 1 chr2R:13091937-13092057 ( 73) ACGGAAAA 1 chr3L:15269531-15269651 ( 18) ACGGAAAA 1 chrX:7264653-7264773 ( 12) GTGGGAAA 1 chrX:7476869-7476989 ( 113) GTTGAAAA 1 chrX:18916379-18916499 ( 29) TGGGGAAA 1 chr3L:1091803-1091923 ( 10) TGTGAAAA 1 chr2L:13555530-13555650 ( 4) GGGGGAAA 1 chr3R:4999764-4999884 ( 106) GGGGGAAA 1 chrX:22851444-22851564 ( 35) GGGGGAAA 1 chr3L:15147551-15147671 ( 95) GGGGGAAA 1 chr2L:12621749-12621869 ( 99) TCTGAAAA 1 chr3R:6946013-6946133 ( 76) GCTGAAAA 1 chrX:19793742-19793862 ( 108) GCTGAAAA 1 chr3L:17460835-17460955 ( 11) AGTGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.62225 E= 1.9e-004 -98 -78 37 70 -1232 -20 45 77 -1232 -1232 174 -81 -1232 -1232 196 -1232 183 -1232 -55 -1232 211 -1232 -1232 -1232 211 -1232 -1232 -1232 211 -1232 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.9e-004 0.117647 0.156863 0.333333 0.392157 0.000000 0.235294 0.352941 0.411765 0.000000 0.000000 0.862745 0.137255 0.000000 0.000000 1.000000 0.000000 0.823529 0.000000 0.176471 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KBGGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [TG][TGC]GGAAAA -------------------------------------------------------------------------------- Time 31.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19795963-19796083 1.16e-02 20_[+2(5.56e-05)]_32_[+3(5.98e-05)]_\ 52 chr2R:10270315-10270435 1.86e-01 3_[+1(4.59e-05)]_109 chrX:7264653-7264773 8.49e-03 29_[+2(5.56e-05)]_83 chr3R:12272255-12272375 4.89e-02 120 chr3L:15253285-15253405 7.19e-03 85_[+2(1.77e-05)]_27 chrX:5284897-5285017 1.93e-01 120 chr3L:3963567-3963687 8.21e-02 96_[+5(7.40e-05)]_16 chr2R:13627150-13627270 1.24e-03 15_[+1(2.43e-05)]_15_[+5(2.32e-05)]_\ 74 chr2R:11094984-11095104 2.15e-01 120 chr2R:15895482-15895602 3.37e-03 8_[+3(3.82e-05)]_104 chr2R:6984908-6985028 2.42e-01 120 chrX:16193932-16194052 3.23e-01 53_[+1(7.42e-05)]_16_[+1(4.59e-05)]_\ 35 chr3R:16560478-16560598 1.44e-01 120 chr2L:1128455-1128575 1.01e-02 26_[+2(5.56e-05)]_86 chr2R:22675827-22675947 1.56e-02 20_[+5(2.32e-05)]_92 chr3L:22608045-22608165 6.43e-03 53_[+3(3.82e-05)]_59 chr3R:31310413-31310533 3.92e-01 120 chr3L:4858695-4858815 9.43e-02 84_[+1(2.43e-05)]_28 chr3L:15275217-15275337 1.60e-03 7_[+4(9.97e-05)]_68_[+1(2.43e-05)]_\ 29 chr3R:16554013-16554133 2.83e-01 38_[+1(2.43e-05)]_74 chr3R:5032450-5032570 1.55e-02 120 chrX:19793742-19793862 4.46e-02 120 chr3R:10639752-10639872 2.46e-02 95_[+1(2.43e-05)]_17 chr3L:22199148-22199268 1.46e-01 45_[+1(2.43e-05)]_67 chrX:1590283-1590403 1.45e-02 81_[+1(9.50e-05)]_31 chr3L:11477719-11477839 2.65e-02 57_[+4(4.92e-05)]_55 chr2L:14136278-14136398 1.36e-01 120 chr3L:1091803-1091923 2.39e-01 120 chr2R:17998540-17998660 5.76e-05 49_[+2(5.56e-05)]_18_[+5(4.80e-05)]_\ 37 chr3R:5024179-5024299 2.59e-01 120 chr3L:15147551-15147671 2.77e-03 68_[+2(1.77e-05)]_44 chrX:19843469-19843589 7.00e-02 90_[+4(6.09e-05)]_22 chrX:1224790-1224910 2.75e-01 12_[+1(9.50e-05)]_8_[+1(9.50e-05)]_\ 84 chr3L:8540532-8540652 3.32e-03 33_[+4(1.22e-05)]_67_[+1(4.59e-05)]_\ 4 chr3R:21341260-21341380 1.11e-02 120 chr2L:19376798-19376918 1.25e-01 120 chr2L:7169160-7169280 9.22e-02 41_[+1(4.59e-05)]_71 chr3R:20284041-20284161 1.05e-02 45_[+4(2.52e-05)]_32_[+4(1.22e-05)]_\ 27 chr2R:14028095-14028215 5.27e-02 88_[+2(5.56e-05)]_24 chr3R:31703025-31703145 4.42e-01 120 chr3R:16875681-16875801 1.95e-03 16_[+1(2.43e-05)]_96 chr2L:14145629-14145749 1.19e-02 52_[+2(5.56e-05)]_8_[+2(7.21e-05)]_\ 44 chr2R:14019776-14019896 4.61e-01 120 chr3L:4189236-4189356 7.58e-03 76_[+2(1.77e-05)]_36 chrX:17503446-17503566 6.26e-04 20_[+3(9.77e-06)]_92 chr3R:11305993-11306113 5.80e-01 120 chr2L:17534106-17534226 3.81e-04 15_[+5(8.65e-05)]_6_[+1(2.43e-05)]_\ 83 chr2R:12974963-12975083 2.14e-01 54_[+1(2.43e-05)]_58 chr3L:11426771-11426891 2.66e-01 120 chr3L:9477804-9477924 1.86e-02 9_[+2(5.56e-05)]_78_[+4(4.92e-05)]_\ 17 chr3R:24813486-24813606 2.85e-04 18_[+4(4.92e-05)]_94 chrX:4599648-4599768 3.07e-02 24_[+2(5.56e-05)]_88 chrX:16798291-16798411 1.69e-01 120 chr2R:15133850-15133970 2.22e-01 120 chr3R:16531535-16531655 7.74e-02 120 chrX:19792797-19792917 1.23e-01 17_[+2(5.56e-05)]_95 chrX:11500411-11500531 1.53e-03 50_[+4(2.52e-05)]_62 chr3L:13289887-13290007 5.02e-02 7_[+4(3.62e-05)]_105 chrX:20499941-20500061 1.11e-01 120 chr2L:6245593-6245713 1.19e-01 80_[+1(2.43e-05)]_32 chrX:3368416-3368536 6.36e-02 22_[+2(5.56e-05)]_90 chr2R:24327392-24327512 8.11e-02 35_[+4(7.49e-05)]_77 chr2L:12621749-12621869 2.15e-03 107_[+4(3.62e-05)]_5 chr2R:21885977-21886097 1.37e-01 120 chrX:1588686-1588806 2.69e-01 120 chr2L:2930780-2930900 2.57e-03 17_[+1(2.43e-05)]_95 chrX:19554196-19554316 2.82e-02 120 chr2R:9245681-9245801 6.76e-01 120 chr3R:7282734-7282854 2.89e-02 81_[+1(2.43e-05)]_31 chrX:10548786-10548906 8.83e-03 23_[+1(2.43e-05)]_11_[+5(6.06e-05)]_\ 70 chr3R:22251482-22251602 3.07e-03 24_[+5(7.40e-05)]_88 chr3L:1094556-1094676 1.04e-02 18_[+1(2.43e-05)]_32_[+5(8.65e-05)]_\ 54 chrX:17817163-17817283 3.77e-03 45_[+2(5.56e-05)]_67 chr3R:8195215-8195335 1.38e-01 120 chr3L:1062624-1062744 3.65e-02 18_[+5(4.80e-05)]_94 chr2R:18354681-18354801 1.03e-03 65_[+1(9.50e-05)]_10_[+1(2.43e-05)]_\ 10_[+4(1.22e-05)]_11 chr3L:1078643-1078763 1.74e-01 14_[+1(9.50e-05)]_98 chrX:10533996-10534116 7.15e-03 97_[+5(4.80e-05)]_7_[+2(5.56e-05)] chr3R:24610190-24610310 4.56e-03 59_[+1(4.59e-05)]_53 chrX:8660488-8660608 9.10e-03 108_[+2(1.77e-05)]_4 chr2L:8878454-8878574 2.70e-01 120 chr3R:21443353-21443473 8.67e-02 120 chr2R:22673434-22673554 2.64e-02 60_[+2(5.56e-05)]_[+2(5.56e-05)]_44 chr3R:29299892-29300012 3.72e-01 120 chr2R:11984539-11984659 3.86e-03 87_[+2(1.77e-05)]_25 chr2L:17267486-17267606 6.70e-04 58_[+1(4.59e-05)]_54 chr2R:21534529-21534649 9.11e-02 109_[+1(9.50e-05)]_3 chr3L:10672625-10672745 2.69e-04 68_[+4(9.97e-05)]_34_[+3(2.69e-05)]_\ 2 chrX:19010361-19010481 2.65e-02 120 chr3R:24944471-24944591 4.63e-02 4_[+4(7.49e-05)]_108 chrX:1382578-1382698 5.29e-02 100_[+3(4.96e-05)]_12 chr3R:9171335-9171455 2.55e-02 108_[+2(7.21e-05)]_4 chr3R:23963987-23964107 4.59e-01 120 chrX:19791926-19792046 4.56e-01 120 chr2L:5055760-5055880 9.59e-05 22_[+5(1.12e-05)]_38_[+2(1.77e-05)]_\ 30_[+5(7.40e-05)]_6 chr3L:18191933-18192053 4.96e-01 120 chr3R:25152919-25153039 3.35e-01 120 chr3L:11310160-11310280 1.13e-01 120 chr2L:14472714-14472834 5.85e-01 120 chrX:7157722-7157842 4.85e-02 96_[+4(7.49e-05)]_1_[+4(7.49e-05)]_\ 7 chr2L:14123210-14123330 7.44e-04 15_[+1(2.43e-05)]_87_[+3(2.69e-05)]_\ 2 chr3R:16520583-16520703 1.67e-02 74_[+5(3.52e-05)]_38 chr3L:10247257-10247377 4.78e-03 120 chr2L:845819-845939 9.81e-03 66_[+2(5.56e-05)]_4_[+2(1.77e-05)]_\ 34 chr3L:13401624-13401744 8.67e-02 32_[+4(7.49e-05)]_80 chrX:19159028-19159148 2.94e-02 111_[+2(5.56e-05)]_1 chr3L:15178461-15178581 6.37e-02 30_[+2(5.56e-05)]_82 chr3R:8813630-8813750 1.26e-02 101_[+4(1.22e-05)]_11 chr2L:18892851-18892971 1.78e-01 39_[+1(4.59e-05)]_73 chr2R:22464671-22464791 2.34e-02 82_[+3(6.95e-05)]_30 chr3R:6977276-6977396 3.06e-03 120 chr3R:30224773-30224893 7.72e-03 120 chr3R:10618988-10619108 9.66e-03 54_[+5(8.65e-05)]_58 chr2L:11347364-11347484 4.61e-03 93_[+1(2.43e-05)]_19 chr3L:2877040-2877160 2.74e-02 99_[+2(1.77e-05)]_13 chr3L:8108435-8108555 1.95e-02 46_[+4(9.97e-05)]_17_[+3(2.69e-05)]_\ 41 chr2R:22230637-22230757 6.13e-01 120 chr3L:12456816-12456936 7.82e-03 73_[+3(9.77e-06)]_39 chr2R:23577862-23577982 1.02e-02 109_[+1(2.43e-05)]_3 chr2L:18896487-18896607 2.84e-03 27_[+2(5.56e-05)]_8_[+5(6.06e-05)]_\ 69 chrX:7278149-7278269 1.95e-01 120 chr3L:15269531-15269651 1.51e-01 120 chr3L:22583862-22583982 5.57e-03 34_[+5(6.06e-05)]_34_[+4(7.49e-05)]_\ 36 chr3R:31884443-31884563 4.81e-01 120 chr2R:25099817-25099937 7.04e-02 30_[+1(2.43e-05)]_82 chrX:10825855-10825975 1.07e-02 43_[+1(7.42e-05)]_69 chr3L:13199031-13199151 2.56e-01 102_[+1(9.50e-05)]_10 chrX:1950387-1950507 2.19e-01 75_[+1(4.59e-05)]_14_[+1(4.59e-05)]_\ 15 chrX:1602521-1602641 4.79e-01 120 chrX:542182-542302 5.13e-01 120 chr3R:9126337-9126457 8.90e-01 120 chrX:19782122-19782242 6.89e-01 120 chr2R:15131662-15131782 4.10e-03 47_[+1(2.43e-05)]_50_[+4(9.97e-05)]_\ 7 chr2R:13343636-13343756 9.87e-02 78_[+2(5.56e-05)]_34 chrX:18916379-18916499 5.72e-02 120 chr3L:5388758-5388878 9.95e-03 15_[+5(9.73e-05)]_97 chr3L:8851838-8851958 2.28e-01 120 chr2L:16381165-16381285 6.34e-02 120 chr3R:16522180-16522300 3.37e-02 120 chrX:1595513-1595633 1.77e-01 120 chr3R:6771915-6772035 1.49e-01 120 chr3L:7018985-7019105 7.14e-01 120 chr2L:19222362-19222482 3.40e-01 120 chr3L:12636636-12636756 3.49e-02 120 chr3R:16570326-16570446 9.16e-02 120 chrX:9120548-9120668 5.30e-05 20_[+3(9.77e-06)]_67_[+1(2.43e-05)]_\ 17 chr3R:22150627-22150747 2.06e-02 120 chr2R:24309497-24309617 2.69e-01 120 chr2L:6249566-6249686 9.67e-04 38_[+4(1.22e-05)]_7_[+1(2.43e-05)]_\ 59 chrX:2970480-2970600 1.68e-02 83_[+1(9.50e-05)]_4_[+1(7.42e-05)]_\ 17 chr2R:23664267-23664387 3.48e-01 120 chrX:22851444-22851564 1.06e-02 79_[+2(5.56e-05)]_1_[+2(5.56e-05)]_\ 1_[+2(5.56e-05)]_15 chr3R:8110711-8110831 3.23e-03 45_[+3(1.85e-05)]_67 chr3R:4999764-4999884 1.66e-03 49_[+2(5.56e-05)]_[+2(5.56e-05)]_16_\ [+4(7.49e-05)]_31 chr3L:12147960-12148080 3.86e-02 42_[+1(4.59e-05)]_70 chrX:8726899-8727019 3.09e-02 120 chr2R:19794881-19795001 4.24e-02 120 chr3L:18188587-18188707 9.00e-02 93_[+1(2.43e-05)]_19 chr3R:23113655-23113775 2.18e-01 120 chrX:7094367-7094487 2.75e-02 83_[+3(3.82e-05)]_29 chr3R:4664176-4664296 2.24e-04 46_[+5(3.52e-05)]_66 chrX:18920141-18920261 2.89e-04 3_[+4(6.09e-05)]_55_[+1(7.42e-05)]_\ [+1(4.59e-05)]_24_[+2(5.56e-05)]_6 chr2L:6847579-6847699 1.82e-02 30_[+2(5.56e-05)]_82 chr2R:13091937-13092057 4.78e-02 120 chr3R:9492270-9492390 1.13e-01 120 chr2R:6599777-6599897 2.87e-03 104_[+3(4.96e-05)]_8 chr2L:19145284-19145404 1.01e-01 110_[+4(9.97e-05)]_2 chr2R:19819688-19819808 1.26e-01 7_[+2(1.77e-05)]_105 chr2R:24741346-24741466 1.42e-03 1_[+4(2.52e-05)]_34_[+1(9.50e-05)]_\ 69 chrX:7275327-7275447 1.81e-01 56_[+1(7.42e-05)]_56 chrX:1564339-1564459 7.12e-02 76_[+2(7.21e-05)]_36 chr2R:23592531-23592651 2.83e-01 120 chr3L:17460835-17460955 1.21e-02 120 chr3R:26795765-26795885 5.79e-03 15_[+5(3.52e-05)]_29_[+2(5.56e-05)]_\ 60 chr2R:22517365-22517485 1.28e-01 120 chrX:3383918-3384038 4.47e-03 20_[+4(1.22e-05)]_62_[+1(2.43e-05)]_\ 22 chr3L:5849132-5849252 2.61e-01 120 chr3R:15130111-15130231 6.25e-02 51_[+2(7.21e-05)]_61 chr3R:27610695-27610815 3.28e-03 120 chr3R:10439092-10439212 5.29e-01 120 chrX:8622497-8622617 2.07e-01 120 chr2R:14439995-14440115 2.60e-02 29_[+3(9.77e-06)]_83 chr3L:6018799-6018919 8.16e-03 9_[+1(4.59e-05)]_94_[+4(1.22e-05)]_\ 1 chr3L:17176343-17176463 4.12e-03 66_[+5(6.06e-05)]_46 chr2L:13555530-13555650 4.66e-03 50_[+4(3.62e-05)]_62 chr3R:6946013-6946133 5.02e-03 91_[+3(2.69e-05)]_21 chr2L:11351978-11352098 2.77e-01 120 chr2L:9972770-9972890 2.12e-02 79_[+3(2.69e-05)]_33 chr2R:6602206-6602326 4.35e-03 [+5(9.73e-05)]_89_[+3(6.95e-05)]_15 chr3R:8698070-8698190 9.47e-02 120 chr2R:23149512-23149632 3.29e-02 120 chr2R:9515676-9515796 2.15e-01 26_[+1(4.59e-05)]_23_[+1(4.59e-05)]_\ 55 chr2L:2483935-2484055 5.21e-02 120 chr2L:4128609-4128729 4.42e-03 31_[+1(4.59e-05)]_81 chr3R:26933915-26934035 5.02e-04 22_[+5(3.52e-05)]_64_[+2(5.56e-05)]_\ 18 chrX:7476869-7476989 2.96e-03 [+3(4.96e-05)]_40_[+3(1.85e-05)]_64 chrX:1507244-1507364 8.63e-02 67_[+4(7.49e-05)]_1_[+4(7.49e-05)]_\ 36 chrX:13208607-13208727 3.88e-02 36_[+1(9.50e-05)]_76 chr3R:9851798-9851918 1.26e-01 112_[+1(2.43e-05)] chr2L:17227186-17227306 3.43e-04 1_[+4(3.62e-05)]_67_[+2(1.77e-05)]_\ 36 chr2R:7689054-7689174 5.21e-01 120 chr2R:15102674-15102794 6.64e-02 58_[+4(7.49e-05)]_54 chr3R:16561766-16561886 3.82e-01 120 chr2L:19923808-19923928 4.97e-02 93_[+1(2.43e-05)]_19 chr3R:22752812-22752932 5.19e-02 34_[+1(4.59e-05)]_78 chr2R:18315434-18315554 9.03e-03 2_[+3(9.77e-06)]_110 chrX:17741797-17741917 4.09e-01 120 chrX:601500-601620 9.76e-03 43_[+5(3.52e-05)]_27_[+2(5.56e-05)]_\ 34 chr3L:21860125-21860245 2.43e-03 40_[+5(1.12e-05)]_72 chr3L:3870304-3870424 7.49e-02 120 chr3R:25174750-25174870 8.38e-02 120 chr2R:22867773-22867893 3.53e-02 120 chrX:6026571-6026691 1.15e-01 46_[+1(4.59e-05)]_66 chrX:18575310-18575430 2.66e-01 48_[+2(7.21e-05)]_64 chr2R:24713168-24713288 8.26e-02 120 chr3R:29322340-29322460 2.86e-04 8_[+2(5.56e-05)]_3_[+5(1.12e-05)]_7_\ [+5(4.80e-05)]_78 chr2R:7433167-7433287 1.50e-01 120 chrX:19829164-19829284 1.09e-01 101_[+1(2.43e-05)]_11 chr3R:9882044-9882164 1.22e-02 90_[+4(1.22e-05)]_22 chr3L:10335928-10336048 1.12e-03 56_[+5(4.80e-05)]_56 chr3L:17441922-17442042 5.47e-03 29_[+5(8.65e-05)]_83 chr3R:30653620-30653740 3.75e-04 20_[+2(5.56e-05)]_16_[+2(5.56e-05)]_\ 46_[+3(1.85e-05)]_14 chr2R:8246942-8247062 1.63e-02 29_[+5(1.12e-05)]_83 chr3L:11284027-11284147 4.87e-02 120 chr3L:10241813-10241933 1.92e-01 120 chrX:12914921-12915041 5.81e-02 92_[+1(2.43e-05)]_20 chr2R:22503305-22503425 7.80e-02 120 chrX:17339800-17339920 3.07e-01 120 chr3L:10670997-10671117 4.06e-03 [+3(1.85e-05)]_[+2(5.56e-05)]_104 chr3R:31717947-31718067 2.09e-01 120 chr2R:20911435-20911555 7.45e-02 120 chr2R:8236776-8236896 3.38e-02 72_[+3(4.96e-05)]_40 chr2R:11615528-11615648 4.19e-02 53_[+4(1.22e-05)]_59 chr3R:13897278-13897398 5.26e-03 79_[+5(1.12e-05)]_33 chr2R:10312429-10312549 2.21e-01 120 chr3L:6337555-6337675 2.38e-02 48_[+3(5.98e-05)]_64 chr3R:31822601-31822721 6.82e-01 120 chr3R:6921674-6921794 1.26e-04 107_[+3(9.77e-06)]_5 chr3R:16876781-16876901 5.78e-03 39_[+4(3.62e-05)]_73 chr3R:23325897-23326017 8.48e-03 103_[+5(1.12e-05)]_9 chr2R:22508501-22508621 5.16e-04 8_[+4(3.62e-05)]_77_[+1(2.43e-05)]_\ 19 chr2L:6236366-6236486 2.59e-01 120 chr3L:6822574-6822694 6.16e-01 120 chr3R:7104445-7104565 7.53e-02 120 chr2R:8052753-8052873 3.22e-02 120 chr2L:8577508-8577628 9.86e-03 120 chr3L:13660637-13660757 7.19e-01 120 chr2L:19237124-19237244 3.44e-03 17_[+2(1.77e-05)]_95 chr3L:7995421-7995541 2.02e-03 78_[+3(7.97e-05)]_8_[+5(3.52e-05)]_\ 6_[+5(4.80e-05)]_4 chrX:10822242-10822362 2.92e-03 46_[+5(8.65e-05)]_15_[+1(4.59e-05)]_\ 43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************