******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/kni.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:20671798-20671918 1.0000 120 chr3R:12454612-12454732 1.0000 120 chr3L:20691385-20691505 1.0000 120 chr2L:4366025-4366145 1.0000 120 chr3R:13887956-13888076 1.0000 120 chr2R:25079400-25079520 1.0000 120 chr3L:20690217-20690337 1.0000 120 chr3L:20681592-20681712 1.0000 120 chr3L:12663832-12663952 1.0000 120 chr2R:11950804-11950924 1.0000 120 chr2R:19820597-19820717 1.0000 120 chr3L:7111122-7111242 1.0000 120 chr3L:10204837-10204957 1.0000 120 chr2L:12368561-12368681 1.0000 120 chr3L:14743451-14743571 1.0000 120 chr3R:19583809-19583929 1.0000 120 chrX:16619632-16619752 1.0000 120 chr3L:19182597-19182717 1.0000 120 chr2R:10869066-10869186 1.0000 120 chr3L:12705516-12705636 1.0000 120 chr3L:18204514-18204634 1.0000 120 chr2L:11411141-11411261 1.0000 120 chr2R:22315037-22315157 1.0000 120 chr3L:21694821-21694941 1.0000 120 chr2R:9670612-9670732 1.0000 120 chr3R:8969685-8969805 1.0000 120 chr2L:846678-846798 1.0000 120 chr3L:15254280-15254400 1.0000 120 chr3L:20691584-20691704 1.0000 120 chr2R:18948776-18948896 1.0000 120 chr3R:13885745-13885865 1.0000 120 chr2R:9005599-9005719 1.0000 120 chr3L:20682628-20682748 1.0000 120 chr2L:13883948-13884068 1.0000 120 chr3R:8947790-8947910 1.0000 120 chr3L:18768069-18768189 1.0000 120 chr3R:31662909-31663029 1.0000 120 chr3L:166288-166408 1.0000 120 chr3R:24597785-24597905 1.0000 120 chr3R:12362237-12362357 1.0000 120 chr3R:8860265-8860385 1.0000 120 chr3R:9915789-9915909 1.0000 120 chr3R:7170105-7170225 1.0000 120 chr2R:15746854-15746974 1.0000 120 chr3R:6301385-6301505 1.0000 120 chr3R:8946593-8946713 1.0000 120 chr2R:7285863-7285983 1.0000 120 chr3R:6120599-6120719 1.0000 120 chr3R:30690369-30690489 1.0000 120 chr3L:3642784-3642904 1.0000 120 chr3L:6783517-6783637 1.0000 120 chr3L:8461777-8461897 1.0000 120 chr3R:9031607-9031727 1.0000 120 chr3R:9906141-9906261 1.0000 120 chrX:692916-693036 1.0000 120 chr3L:2243835-2243955 1.0000 120 chr3R:25002370-25002490 1.0000 120 chr3L:16934392-16934512 1.0000 120 chr3L:20701064-20701184 1.0000 120 chr3L:19026750-19026870 1.0000 120 chr2L:19313601-19313721 1.0000 120 chr3L:6310728-6310848 1.0000 120 chr2R:13562263-13562383 1.0000 120 chr2R:15355580-15355700 1.0000 120 chr2R:21873192-21873312 1.0000 120 chrX:7296074-7296194 1.0000 120 chr2R:17784550-17784670 1.0000 120 chr3L:8221954-8222074 1.0000 120 chr2R:12461807-12461927 1.0000 120 chr3R:23662848-23662968 1.0000 120 chr3R:6290409-6290529 1.0000 120 chr3L:11515510-11515630 1.0000 120 chr2R:11396039-11396159 1.0000 120 chr3R:19803314-19803434 1.0000 120 chr3R:4962096-4962216 1.0000 120 chr3R:12127155-12127275 1.0000 120 chr3L:11547448-11547568 1.0000 120 chr3R:19301107-19301227 1.0000 120 chr2L:5247753-5247873 1.0000 120 chr2R:11796309-11796429 1.0000 120 chr2L:18656806-18656926 1.0000 120 chrX:4437102-4437222 1.0000 120 chr3L:20700864-20700984 1.0000 120 chr3L:14529663-14529783 1.0000 120 chr2R:20306038-20306158 1.0000 120 chr2R:13561967-13562087 1.0000 120 chrX:13231099-13231219 1.0000 120 chr2L:18333718-18333838 1.0000 120 chr3L:17984229-17984349 1.0000 120 chr2R:16611518-16611638 1.0000 120 chr2L:2335043-2335163 1.0000 120 chr3L:513823-513943 1.0000 120 chr2R:6604536-6604656 1.0000 120 chr3R:4451210-4451330 1.0000 120 chr2L:11472387-11472507 1.0000 120 chr2L:18480678-18480798 1.0000 120 chr3L:811883-812003 1.0000 120 chr3L:7880437-7880557 1.0000 120 chr2L:6695529-6695649 1.0000 120 chr2R:22139531-22139651 1.0000 120 chr3L:4308071-4308191 1.0000 120 chr3R:13289125-13289245 1.0000 120 chr3L:12616122-12616242 1.0000 120 chr3R:10035201-10035321 1.0000 120 chr3R:14431051-14431171 1.0000 120 chr3R:13909215-13909335 1.0000 120 chrX:4673363-4673483 1.0000 120 chr3R:23340806-23340926 1.0000 120 chr3R:14676231-14676351 1.0000 120 chr2L:6219132-6219252 1.0000 120 chr2R:19231060-19231180 1.0000 120 chr2R:7290430-7290550 1.0000 120 chr3R:31555838-31555958 1.0000 120 chr3L:12705733-12705853 1.0000 120 chr2L:21245352-21245472 1.0000 120 chr2L:14438582-14438702 1.0000 120 chr3L:15007430-15007550 1.0000 120 chr2R:8059206-8059326 1.0000 120 chr2R:11553173-11553293 1.0000 120 chr2R:8986973-8987093 1.0000 120 chr2R:16821803-16821923 1.0000 120 chr3L:2398748-2398868 1.0000 120 chr3R:10659634-10659754 1.0000 120 chr3R:16092337-16092457 1.0000 120 chrX:1262968-1263088 1.0000 120 chr2L:15317441-15317561 1.0000 120 chr3L:6778173-6778293 1.0000 120 chr2R:16591444-16591564 1.0000 120 chr3R:9138360-9138480 1.0000 120 chr2R:16807793-16807913 1.0000 120 chrX:4198890-4199010 1.0000 120 chr3R:9135865-9135985 1.0000 120 chr3R:31324624-31324744 1.0000 120 chr3R:6329932-6330052 1.0000 120 chr3R:6686315-6686435 1.0000 120 chr2L:1463441-1463561 1.0000 120 chr3L:10775295-10775415 1.0000 120 chr2R:24550996-24551116 1.0000 120 chr3L:16630439-16630559 1.0000 120 chr3L:17962795-17962915 1.0000 120 chr3L:20701742-20701862 1.0000 120 chr3R:9603191-9603311 1.0000 120 chr3L:21066364-21066484 1.0000 120 chrX:16456699-16456819 1.0000 120 chr3R:14483119-14483239 1.0000 120 chrX:8262950-8263070 1.0000 120 chr3R:23911196-23911316 1.0000 120 chr2R:20633358-20633478 1.0000 120 chr2L:14656623-14656743 1.0000 120 chr3R:8160554-8160674 1.0000 120 chr3L:6825947-6826067 1.0000 120 chr3R:13888155-13888275 1.0000 120 chr2R:9708912-9709032 1.0000 120 chr3R:5389204-5389324 1.0000 120 chr2R:17784755-17784875 1.0000 120 chr2R:12594762-12594882 1.0000 120 chr3R:19348255-19348375 1.0000 120 chrX:6797254-6797374 1.0000 120 chr3R:9603394-9603514 1.0000 120 chr2L:16710822-16710942 1.0000 120 chr3L:20665588-20665708 1.0000 120 chr3L:15203603-15203723 1.0000 120 chr3L:5127745-5127865 1.0000 120 chr2L:21024423-21024543 1.0000 120 chr2L:3591071-3591191 1.0000 120 chr2L:20004512-20004632 1.0000 120 chr2L:1733574-1733694 1.0000 120 chr3R:5683475-5683595 1.0000 120 chr3R:22729125-22729245 1.0000 120 chr3R:4726450-4726570 1.0000 120 chr2L:16605159-16605279 1.0000 120 chr3L:8928887-8929007 1.0000 120 chr2R:16806754-16806874 1.0000 120 chr2R:6193056-6193176 1.0000 120 chr2R:17145816-17145936 1.0000 120 chr2R:24376931-24377051 1.0000 120 chr2L:7872385-7872505 1.0000 120 chr3R:21093137-21093257 1.0000 120 chr4:380607-380727 1.0000 120 chr3R:21586432-21586552 1.0000 120 chr2L:11038305-11038425 1.0000 120 chr2R:18787627-18787747 1.0000 120 chr3R:4731184-4731304 1.0000 120 chr3L:22372726-22372846 1.0000 120 chr2R:23618896-23619016 1.0000 120 chr3L:10771765-10771885 1.0000 120 chr3R:27205558-27205678 1.0000 120 chr3L:17985141-17985261 1.0000 120 chr2L:18312040-18312160 1.0000 120 chr3R:13948777-13948897 1.0000 120 chr2R:19256415-19256535 1.0000 120 chr3L:16569382-16569502 1.0000 120 chr2L:18307327-18307447 1.0000 120 chr2R:9276574-9276694 1.0000 120 chr3L:13882640-13882760 1.0000 120 chr3L:18239190-18239310 1.0000 120 chr3R:19091773-19091893 1.0000 120 chr2R:9027405-9027525 1.0000 120 chr2R:14966878-14966998 1.0000 120 chr2L:14699998-14700118 1.0000 120 chr3L:3648464-3648584 1.0000 120 chr2R:10217205-10217325 1.0000 120 chr3R:29012385-29012505 1.0000 120 chr3L:14552422-14552542 1.0000 120 chr3R:18913007-18913127 1.0000 120 chr3R:21066889-21067009 1.0000 120 chr2L:14540290-14540410 1.0000 120 chr3L:10392085-10392205 1.0000 120 chrX:22634153-22634273 1.0000 120 chr2R:20975821-20975941 1.0000 120 chr2L:14442271-14442391 1.0000 120 chr3R:23790680-23790800 1.0000 120 chr3L:15534319-15534439 1.0000 120 chr3R:16772069-16772189 1.0000 120 chr3L:19048405-19048525 1.0000 120 chr2R:10556380-10556500 1.0000 120 chr3R:25543741-25543861 1.0000 120 chr3R:24297708-24297828 1.0000 120 chr3R:16135767-16135887 1.0000 120 chr2L:14699791-14699911 1.0000 120 chr3R:25587821-25587941 1.0000 120 chr2L:9609602-9609722 1.0000 120 chr3R:15473553-15473673 1.0000 120 chr2R:13166829-13166949 1.0000 120 chr3L:12714763-12714883 1.0000 120 chr2R:15355780-15355900 1.0000 120 chr2R:10691875-10691995 1.0000 120 chr2L:19054634-19054754 1.0000 120 chr2L:18305567-18305687 1.0000 120 chr3L:3672896-3673016 1.0000 120 chr2R:15602105-15602225 1.0000 120 chr2L:14448929-14449049 1.0000 120 chr2R:8991363-8991483 1.0000 120 chr2L:713413-713533 1.0000 120 chr2R:8643292-8643412 1.0000 120 chr3R:15437733-15437853 1.0000 120 chr3L:3843458-3843578 1.0000 120 chr2R:17083239-17083359 1.0000 120 chr3L:20692698-20692818 1.0000 120 chr2L:7545674-7545794 1.0000 120 chr3R:30472446-30472566 1.0000 120 chrX:18991415-18991535 1.0000 120 chr2R:17501323-17501443 1.0000 120 chr2L:21040770-21040890 1.0000 120 chrX:9483836-9483956 1.0000 120 chr3R:4980258-4980378 1.0000 120 chr2R:18601174-18601294 1.0000 120 chr3R:31936235-31936355 1.0000 120 chr2R:21026312-21026432 1.0000 120 chr3L:20687288-20687408 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_kni/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/kni.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.234 G 0.236 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.234 G 0.236 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCCMCCC MEME-1 width = 8 sites = 18 llr = 173 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::6:2: pos.-specific C aaaa497a probability G :::::12: matrix T :::::::: bits 2.1 **** * 1.9 **** * 1.7 **** * * 1.5 **** * * Relative 1.3 **** * * Entropy 1.0 ****** * (13.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCACCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19048405-19048525 62 1.04e-05 CTTTTGAAGT CCCCACCC CACCTCTCTG chr3L:10392085-10392205 92 1.04e-05 ACCGCCAACG CCCCACCC CAAAATGTGC chr3L:5127745-5127865 16 1.04e-05 TGATATCCCG CCCCACCC CCTGGCCACC chr3R:9915789-9915909 85 1.04e-05 TTCCATTAAC CCCCACCC GTAACCCTCC chr2L:11411141-11411261 25 1.04e-05 TGCTCACCTG CCCCACCC ACTCACCTGT chr2L:14438582-14438702 31 1.94e-05 TCGCCACCCT CCCCCCCC CTGCCATTTG chr2R:22139531-22139651 87 1.94e-05 TCTGGCTATT CCCCCCCC TTTCACCTCT chr3L:7880437-7880557 20 1.94e-05 TACCACCGCC CCCCCCCC CCACCAAAGA chr3L:19026750-19026870 108 1.94e-05 TTGTcccccc cccccccc ccccc chr3R:8946593-8946713 110 1.94e-05 TAGTAGAGCC CCCCCCCC CCT chr3R:13885745-13885865 83 2.98e-05 AGTAATTGTC CCCCACGC GAAAGTCATG chr2L:14656623-14656743 30 3.89e-05 TCCCGGTTAC CCCCCCGC TCAACCCATC chr3L:20671798-20671918 86 3.89e-05 CGCCACCAGA CCCCCCGC CTGCCAGGCT chr2L:21024423-21024543 82 5.09e-05 TAATGAGGAG CCCCACAC CGACCAACTT chr3L:513823-513943 19 5.09e-05 TCTTTCAACG CCCCACAC CCCATTTTCT chr3R:7170105-7170225 68 6.12e-05 CTTTCAACTT CCCCCCAC TCCCCCCTTC chr2R:6604536-6604656 65 7.17e-05 AAACATCTCG CCCCAGCC ACGCCCACGA chr3L:14529663-14529783 43 7.17e-05 GGTCAAAACC CCCCAGCC CCCAAAAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19048405-19048525 1e-05 61_[+1]_51 chr3L:10392085-10392205 1e-05 91_[+1]_21 chr3L:5127745-5127865 1e-05 15_[+1]_97 chr3R:9915789-9915909 1e-05 84_[+1]_28 chr2L:11411141-11411261 1e-05 24_[+1]_88 chr2L:14438582-14438702 1.9e-05 30_[+1]_82 chr2R:22139531-22139651 1.9e-05 86_[+1]_26 chr3L:7880437-7880557 1.9e-05 19_[+1]_93 chr3L:19026750-19026870 1.9e-05 107_[+1]_5 chr3R:8946593-8946713 1.9e-05 109_[+1]_3 chr3R:13885745-13885865 3e-05 82_[+1]_30 chr2L:14656623-14656743 3.9e-05 29_[+1]_83 chr3L:20671798-20671918 3.9e-05 85_[+1]_27 chr2L:21024423-21024543 5.1e-05 81_[+1]_31 chr3L:513823-513943 5.1e-05 18_[+1]_94 chr3R:7170105-7170225 6.1e-05 67_[+1]_45 chr2R:6604536-6604656 7.2e-05 64_[+1]_48 chr3L:14529663-14529783 7.2e-05 42_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCMCCC width=8 seqs=18 chr3L:19048405-19048525 ( 62) CCCCACCC 1 chr3L:10392085-10392205 ( 92) CCCCACCC 1 chr3L:5127745-5127865 ( 16) CCCCACCC 1 chr3R:9915789-9915909 ( 85) CCCCACCC 1 chr2L:11411141-11411261 ( 25) CCCCACCC 1 chr2L:14438582-14438702 ( 31) CCCCCCCC 1 chr2R:22139531-22139651 ( 87) CCCCCCCC 1 chr3L:7880437-7880557 ( 20) CCCCCCCC 1 chr3L:19026750-19026870 ( 108) CCCCCCCC 1 chr3R:8946593-8946713 ( 110) CCCCCCCC 1 chr3R:13885745-13885865 ( 83) CCCCACGC 1 chr2L:14656623-14656743 ( 30) CCCCCCGC 1 chr3L:20671798-20671918 ( 86) CCCCCCGC 1 chr2L:21024423-21024543 ( 82) CCCCACAC 1 chr3L:513823-513943 ( 19) CCCCACAC 1 chr3R:7170105-7170225 ( 68) CCCCCCAC 1 chr2R:6604536-6604656 ( 65) CCCCAGCC 1 chr3L:14529663-14529783 ( 43) CCCCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 3.7e+002 -1081 210 -1081 -1081 -1081 210 -1081 -1081 -1081 210 -1081 -1081 -1081 210 -1081 -1081 104 93 -1081 -1081 -1081 193 -109 -1081 -69 151 -50 -1081 -1081 210 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.7e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.166667 0.666667 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCMCCC MEME-1 regular expression -------------------------------------------------------------------------------- CCCC[AC]CCC -------------------------------------------------------------------------------- Time 7.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCAAR MEME-2 width = 8 sites = 45 llr = 362 E-value = 3.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::a65 pos.-specific C 1::aa:22 probability G 2aa:::13 matrix T 6:::::1: bits 2.1 * ** 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.0 ***** (11.6 bits) 0.8 ***** 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCAAA consensus G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23911196-23911316 99 1.56e-05 CCATCAATCA TGGCCAAA AACGAAACGC chr3L:12705733-12705853 39 1.56e-05 CCCATTGCAT TGGCCAAA GTGACATAAA chr3L:811883-812003 68 1.56e-05 CCCACCAAAA TGGCCAAA GCCTGACCAA chr2R:11950804-11950924 71 1.56e-05 CAGCTGAGTG TGGCCAAA AGCGTAAGGC chr3L:3843458-3843578 77 2.92e-05 CGAAATCAAA TGGCCAAG GCTTTTGTAA chr3R:19348255-19348375 48 2.92e-05 CTCCTTCTCT TGGCCAAG ATGCTTTCTG chr3L:20701742-20701862 103 2.92e-05 CCAGCTTTTG TGGCCAAG ACGACTCGGC chr2R:19231060-19231180 70 2.92e-05 CGGTTGTTGC TGGCCAAG AAGTTGGCTG chr3L:166288-166408 15 2.92e-05 TTGTATTGTT TGGCCAAG ACATCGCGTT chr2R:9670612-9670732 87 2.92e-05 TCTACGTACG TGGCCAAG CCATGATTCT chr2R:20975821-20975941 71 4.34e-05 AATCATATGT GGGCCAAA TTCGAAGGCT chr2R:19256415-19256535 50 4.34e-05 GGTCGTAGTG GGGCCAAA AACCTGCACA chr2L:846678-846798 75 4.34e-05 GCCGCAGAAC GGGCCAAA TAAGAAATAA chrX:16619632-16619752 40 4.34e-05 CACTTATTAC GGGCCAAA CGTGCACATT chr3R:21066889-21067009 46 5.69e-05 AGCTTTCTCT TGGCCACA ACCAAGCCGT chr2L:14699998-14700118 26 5.69e-05 ggtttggttt tgGCCACA TGCCAGTGCG chr2R:15746854-15746974 15 5.69e-05 GCCAGTGGCC TGGCCACA ATTTGGATTT chrX:18991415-18991535 79 8.28e-05 CCCATATGTG TGGCCAAC TCACTCGCCT chr2R:18948776-18948896 56 8.28e-05 CAAAAGGCCA TGGCCAAC GGTTCTTTGG chr3R:4726450-4726570 42 9.47e-05 CGTTATGTAA TGGCCACG TTGGCGGTGG chr3L:4308071-4308191 108 9.47e-05 ACGGCTTTTT TGGCCACG CTTGT chr3R:13948777-13948897 79 1.09e-04 ACGGTACGTG CGGCCAAA CAAATTACAG chrX:4198890-4199010 42 1.09e-04 GTTTGGATTA CGGCCAAA GGCGGATATC chr3L:3642784-3642904 71 1.09e-04 AATTTTACCT CGGCCAAA GAAATGTCCA chr2R:9005599-9005719 91 1.09e-04 ACACCGAGAA CGGCCAAA AGCTAGGCGC chr2R:8991363-8991483 32 1.22e-04 CCTTGTGGAA TGGCCAGA GGGGCGGAGG chr2R:9027405-9027525 96 1.22e-04 AATCAATCGA TGGCCAGA AGATGGCACC chr2L:18307327-18307447 14 1.22e-04 GTCAATAACC TGGCCAGA TTTTCCCTAT chr3L:16569382-16569502 17 1.47e-04 TTGGGACATT GGGCCACA TTGGGCCATC chr3R:6301385-6301505 1 1.47e-04 . CGGCCAAG AATCTGGCGC chr3R:8947790-8947910 60 1.47e-04 CCCATCGAAT GGGCCaca aaacacagaa chr3L:12616122-12616242 13 1.59e-04 ATTGCCCTTT TGGCCAGG GCCGTGCCCA chr3R:30472446-30472566 35 1.86e-04 CTGAGATGCA GGGCCAAC TTAACCAGAA chr2L:19054634-19054754 112 1.86e-04 aTTCGGAGAC GGGCCAAC T chrX:22634153-22634273 41 1.86e-04 TTATGCATAT TGGCCATA CCATTATGCT chr3R:5389204-5389324 82 1.86e-04 AAACTGGAGC GGGCCAAC TGGAGGTCTT chr3R:8969685-8969805 1 1.86e-04 . GGGCCAAC AGGTTTCGGT chr3L:5127745-5127865 26 2.09e-04 CCCCACCCCC TGGCCACC AAATTCACGA chr3L:8928887-8929007 14 2.22e-04 GCCCTTCACT TGGCCATG TCTCTGTGGT chr2R:16807793-16807913 50 2.22e-04 TACCTACAAC TGGCCATG CCTCATTGTT chr2R:7285863-7285983 106 2.22e-04 CGACACTTGA TGGCCATG GTCGTGT chr2R:23618896-23619016 70 2.46e-04 CAAATTGACT CGGCCACA TAATTAGGCA chr3R:6290409-6290529 97 2.46e-04 GTGTGCGACA GGGCCAGA GTTACACATG chrX:1262968-1263088 81 4.28e-04 GGAAGTTCCA TGCCCAAG CCGAGTTTTG chr2R:8986973-8987093 14 4.28e-04 CACTGGTGGC TGCCCAAG CGTGGACGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23911196-23911316 1.6e-05 98_[+2]_14 chr3L:12705733-12705853 1.6e-05 38_[+2]_74 chr3L:811883-812003 1.6e-05 67_[+2]_45 chr2R:11950804-11950924 1.6e-05 70_[+2]_42 chr3L:3843458-3843578 2.9e-05 76_[+2]_36 chr3R:19348255-19348375 2.9e-05 47_[+2]_65 chr3L:20701742-20701862 2.9e-05 102_[+2]_10 chr2R:19231060-19231180 2.9e-05 69_[+2]_43 chr3L:166288-166408 2.9e-05 14_[+2]_98 chr2R:9670612-9670732 2.9e-05 86_[+2]_26 chr2R:20975821-20975941 4.3e-05 70_[+2]_42 chr2R:19256415-19256535 4.3e-05 49_[+2]_63 chr2L:846678-846798 4.3e-05 74_[+2]_38 chrX:16619632-16619752 4.3e-05 39_[+2]_73 chr3R:21066889-21067009 5.7e-05 45_[+2]_67 chr2L:14699998-14700118 5.7e-05 25_[+2]_87 chr2R:15746854-15746974 5.7e-05 14_[+2]_98 chrX:18991415-18991535 8.3e-05 78_[+2]_34 chr2R:18948776-18948896 8.3e-05 55_[+2]_57 chr3R:4726450-4726570 9.5e-05 41_[+2]_71 chr3L:4308071-4308191 9.5e-05 107_[+2]_5 chr3R:13948777-13948897 0.00011 78_[+2]_34 chrX:4198890-4199010 0.00011 41_[+2]_71 chr3L:3642784-3642904 0.00011 70_[+2]_42 chr2R:9005599-9005719 0.00011 90_[+2]_22 chr2R:8991363-8991483 0.00012 31_[+2]_81 chr2R:9027405-9027525 0.00012 95_[+2]_17 chr2L:18307327-18307447 0.00012 13_[+2]_99 chr3L:16569382-16569502 0.00015 16_[+2]_96 chr3R:6301385-6301505 0.00015 [+2]_112 chr3R:8947790-8947910 0.00015 59_[+2]_53 chr3L:12616122-12616242 0.00016 12_[+2]_100 chr3R:30472446-30472566 0.00019 34_[+2]_78 chr2L:19054634-19054754 0.00019 111_[+2]_1 chrX:22634153-22634273 0.00019 40_[+2]_72 chr3R:5389204-5389324 0.00019 81_[+2]_31 chr3R:8969685-8969805 0.00019 [+2]_112 chr3L:5127745-5127865 0.00021 25_[+2]_87 chr3L:8928887-8929007 0.00022 13_[+2]_99 chr2R:16807793-16807913 0.00022 49_[+2]_63 chr2R:7285863-7285983 0.00022 105_[+2]_7 chr2R:23618896-23619016 0.00025 69_[+2]_43 chr3R:6290409-6290529 0.00025 96_[+2]_16 chrX:1262968-1263088 0.00043 80_[+2]_32 chr2R:8986973-8987093 0.00043 13_[+2]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCAAR width=8 seqs=45 chr3R:23911196-23911316 ( 99) TGGCCAAA 1 chr3L:12705733-12705853 ( 39) TGGCCAAA 1 chr3L:811883-812003 ( 68) TGGCCAAA 1 chr2R:11950804-11950924 ( 71) TGGCCAAA 1 chr3L:3843458-3843578 ( 77) TGGCCAAG 1 chr3R:19348255-19348375 ( 48) TGGCCAAG 1 chr3L:20701742-20701862 ( 103) TGGCCAAG 1 chr2R:19231060-19231180 ( 70) TGGCCAAG 1 chr3L:166288-166408 ( 15) TGGCCAAG 1 chr2R:9670612-9670732 ( 87) TGGCCAAG 1 chr2R:20975821-20975941 ( 71) GGGCCAAA 1 chr2R:19256415-19256535 ( 50) GGGCCAAA 1 chr2L:846678-846798 ( 75) GGGCCAAA 1 chrX:16619632-16619752 ( 40) GGGCCAAA 1 chr3R:21066889-21067009 ( 46) TGGCCACA 1 chr2L:14699998-14700118 ( 26) TGGCCACA 1 chr2R:15746854-15746974 ( 15) TGGCCACA 1 chrX:18991415-18991535 ( 79) TGGCCAAC 1 chr2R:18948776-18948896 ( 56) TGGCCAAC 1 chr3R:4726450-4726570 ( 42) TGGCCACG 1 chr3L:4308071-4308191 ( 108) TGGCCACG 1 chr3R:13948777-13948897 ( 79) CGGCCAAA 1 chrX:4198890-4199010 ( 42) CGGCCAAA 1 chr3L:3642784-3642904 ( 71) CGGCCAAA 1 chr2R:9005599-9005719 ( 91) CGGCCAAA 1 chr2R:8991363-8991483 ( 32) TGGCCAGA 1 chr2R:9027405-9027525 ( 96) TGGCCAGA 1 chr2L:18307327-18307447 ( 14) TGGCCAGA 1 chr3L:16569382-16569502 ( 17) GGGCCACA 1 chr3R:6301385-6301505 ( 1) CGGCCAAG 1 chr3R:8947790-8947910 ( 60) GGGCCACA 1 chr3L:12616122-12616242 ( 13) TGGCCAGG 1 chr3R:30472446-30472566 ( 35) GGGCCAAC 1 chr2L:19054634-19054754 ( 112) GGGCCAAC 1 chrX:22634153-22634273 ( 41) TGGCCATA 1 chr3R:5389204-5389324 ( 82) GGGCCAAC 1 chr3R:8969685-8969805 ( 1) GGGCCAAC 1 chr3L:5127745-5127865 ( 26) TGGCCACC 1 chr3L:8928887-8929007 ( 14) TGGCCATG 1 chr2R:16807793-16807913 ( 50) TGGCCATG 1 chr2R:7285863-7285983 ( 106) TGGCCATG 1 chr2R:23618896-23619016 ( 70) CGGCCACA 1 chr3R:6290409-6290529 ( 97) GGGCCAGA 1 chrX:1262968-1263088 ( 81) TGCCCAAG 1 chr2R:8986973-8987093 ( 14) TGCCCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.6715 E= 3.9e+002 -1214 -81 5 126 -1214 -1214 208 -1214 -1214 -239 202 -1214 -1214 210 -1214 -1214 -1214 210 -1214 -1214 189 -1214 -1214 -1214 115 -22 -109 -155 92 -59 50 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.9e+002 0.000000 0.133333 0.244444 0.622222 0.000000 0.000000 1.000000 0.000000 0.000000 0.044444 0.955556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.200000 0.111111 0.088889 0.511111 0.155556 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCAAR MEME-2 regular expression -------------------------------------------------------------------------------- [TG]GGCCA[AC][AG] -------------------------------------------------------------------------------- Time 13.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TTBDMTTT MEME-3 width = 8 sites = 84 llr = 594 E-value = 8.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::25::: pos.-specific C ::313::: probability G ::332::: matrix T aa431aaa bits 2.1 1.9 ** ** 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.0 ** *** (10.2 bits) 0.8 ** *** 0.6 ** *** 0.4 *** *** 0.2 *** **** 0.0 -------- Multilevel TTTGATTT consensus GTC sequence CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14448929-14449049 103 1.97e-05 TTGTTTTTTA TTTGATTT TCACTTTGTT chr4:380607-380727 105 1.97e-05 TTAAAGCGTT TTTGATTT CTTTCTGA chr3R:9603191-9603311 24 1.97e-05 TCTATGAGAA TTTGATTT CATATAATCG chr2L:15317441-15317561 57 1.97e-05 CCGCGTGCGC TTTGATTT TATTGCCAGC chr2L:18656806-18656926 105 1.97e-05 CGGCAATTTG TTTGATTT CTCTCTGA chr2R:10217205-10217325 65 4.14e-05 ACATGCAATC TTTTATTT GCTGCCTATA chr3R:23340806-23340926 84 4.14e-05 ATGAGCACGC TTTTATTT TGTTTACACA chr3R:24597785-24597905 71 4.14e-05 ACGTGCATAT TTTTATTT ATTTATTCTT chr3L:18204514-18204634 36 4.14e-05 TAGAACTAGT TTTTATTT CTTTTTTTCC chr3L:20690217-20690337 64 4.14e-05 GCTGAATCGA TTTTATTT CCCTCCGCCT chr2L:1733574-1733694 26 7.70e-05 ATTGGAAAAA TTGGATTT ATTACGAAGT chrX:1262968-1263088 96 7.70e-05 AAGCCGAGTT TTGGATTT CCGCTACAAG chr2R:20306038-20306158 75 7.70e-05 TTATTCGATG TTCGATTT TAGCTTGCCG chr2R:15746854-15746974 25 7.70e-05 TGGCCACAAT TTGGATTT TGGTCTTCGG chr3R:8860265-8860385 89 7.70e-05 GTGTGCTTCA TTCGATTT ACGAGCCACT chr3R:8969685-8969805 20 7.70e-05 GGTTTCGGTT TTGGATTT TGTATGGTCA chr3L:19048405-19048525 48 1.33e-04 CAACAGGCCT TTTGCTTT TGAAGTCCCC chr2R:18787627-18787747 97 1.33e-04 TGTGACGTTG TTTGCTTT GTTGAACCTT chr2R:16806754-16806874 108 1.33e-04 TGTTTTCTGT TTCTATTT CCTTC chr2R:12594762-12594882 14 1.33e-04 TTGTTTATTG TTGTATTT TGTTGTTTTT chr2R:7290430-7290550 37 1.33e-04 AGCTCACCAT TTCTATTT GGCACGCAGT chr3L:20700864-20700984 108 1.33e-04 AACGTCATCG TTTGCTTT AAGGC chr3R:12127155-12127275 60 1.33e-04 TGGGTTTCTG TTTGCTTT TTCATGCAAA chr3L:20692698-20692818 62 1.75e-04 TAAATTTACA TTTTCTTT AAGTAACAAA chr3R:9135865-9135985 111 1.75e-04 CCCTACTCCA TTTTCTTT TC chr3L:19026750-19026870 89 1.75e-04 CTCTGGTGTG TTTTCTTT CTTGTccccc chr3R:6120599-6120719 30 1.75e-04 AAATCAAAAT TTTAATTT CCAGCTAACC chr3L:20691584-20691704 22 1.75e-04 TTGTGGCATT TTTAATTT ACTACACAAC chr2R:11950804-11950924 27 1.75e-04 GTTGTGCATT TTTAATTT GCCTACAGGC chr2R:6193056-6193176 97 2.05e-04 CATAAAAGTC TTGGCTTT AACACACAGT chr3R:9603394-9603514 87 2.05e-04 TTGTCCGGCT TTGGCTTT GCCTCCTTCC chr2R:16807793-16807913 67 2.05e-04 GCCTCATTGT TTGGCTTT GTTAAAGAGC chr3R:12362237-12362357 54 2.05e-04 ggtatATGGG TTCGCTTT CAGCGATAAA chr2L:7545674-7545794 75 2.97e-04 CATAATTCTA TTGTCTTT CGACCTGTCC chrX:4673363-4673483 17 2.97e-04 ctgtttctgt ttcaattt ctggttTTCC chr2R:22139531-22139651 30 2.97e-04 TTCCGTGAAA TTCTCTTT CCGAAACATG chr2R:16611518-16611638 71 2.97e-04 ATCCAATTTC TTCTCTTT CTCCTCCGGT chrX:13231099-13231219 103 2.97e-04 TCGGTTTCCT TTCAATTT CTTGGGGAGT chr2L:5247753-5247873 25 2.97e-04 TTTAGTATTC TTCAATTT CGTCGAGTAT chr3R:4962096-4962216 94 2.97e-04 CGAAATGCAA TTGTCTTT CAAAACCTTT chr2R:21873192-21873312 42 2.97e-04 GCTGGCTGCA TTGAATTT AAATTCAAGT chrX:16619632-16619752 85 2.97e-04 CAAATTCGAA TTCAATTT GATTGTAACT chr3R:13887956-13888076 94 2.97e-04 TACATTAACA TTCAATTT GAGGCGGCCA chr2R:21026312-21026432 113 3.55e-04 TACTCATGTT TTTTGTTT chr2R:8643292-8643412 60 3.55e-04 tgagctcgat tttcattt TCCGGAGCGA chr3R:23790680-23790800 70 3.55e-04 TTTGTTTGCG TTTCATTT TCGTATGCTT chr2L:14540290-14540410 101 3.55e-04 TGTATGTGTT TTTTGTTT TTCGGGTTTC chr3R:13948777-13948897 15 3.55e-04 TGGTTGGATG TTTTGTTT ATGCTGGGCA chr2R:13561967-13562087 5 3.55e-04 TCAT TTTCATTT TTGTGGATTT chr3R:7170105-7170225 101 3.55e-04 CTATTACCAG TTTCATTT TTGTTGACAC chr3L:14743451-14743571 12 3.55e-04 AAAAAACTAC TTTCATTT TCTCTCTACA chr2L:4366025-4366145 88 3.55e-04 TGTGAATTCA TTTTGTTT GCCTTTGCCT chr3L:3672896-3673016 105 3.86e-04 GGGTGTGGGA TTGGGTTT TCCGCTGC chr3L:10775295-10775415 87 3.86e-04 GTGCGTCTTT TTGGGTTT GTGTGTCAGT chr3L:3843458-3843578 14 4.91e-04 CGGGTTCCAG TTCCATTT ACCTGCCCGG chr3R:18913007-18913127 65 4.91e-04 CCTAGGTACA TTCACTTT GCCCGACTTT chr2L:16605159-16605279 18 4.91e-04 ATTGCGGTTA TTGACTTT AAACTCATTT chr3L:20701742-20701862 23 4.91e-04 TGCTGATCTG TTCCATTT CCAATTAGGT chr3R:9138360-9138480 60 4.91e-04 ACCGGTTTCA TTCTGTTT GACGGTCGGT chr2R:16591444-16591564 8 4.91e-04 CCGTCTA TTCTGTTT ATATAACGAA chr2R:8986973-8987093 59 4.91e-04 TTTGTAGAAT TTCACTTT CGTTATTGTT chr3R:31555838-31555958 33 4.91e-04 CATTCTTCTC TTGACTTT TCTGTCCACT chr3L:513823-513943 100 4.91e-04 GATAAATGTT TTGTGTTT TGTCTGTTTT chr2L:18333718-18333838 15 4.91e-04 ACCTTGGTTT TTGTGTTT TAGAAATTTA chr3R:6290409-6290529 27 4.91e-04 AGACACGCGC TTGCATTT GAATGTCTTT chr3R:30690369-30690489 107 4.91e-04 TCCACTTTCG TTGACTTT CTTTGT chr2R:9005599-9005719 112 4.91e-04 TAGGCGCTGT TTCTGTTT C chr2R:10691875-10691995 38 5.47e-04 TTAAAACATG TTTGTTTT GCCGGTTAGG chr2R:20975821-20975941 3 5.47e-04 CA TTTGTTTT TAGTTTTTTC chr3L:166288-166408 59 5.47e-04 GGTGCGCTAT TTTCCTTT TGACATTTGA chr3L:20687288-20687408 61 6.68e-04 TAAATCTAAT TTCGTTTT TCAAAAATAA chr3L:14552422-14552542 69 6.68e-04 GTATATGTAT TTGAGTTT TATCTATGCT chr2R:19256415-19256535 6 6.68e-04 CGCTG TTGGTTTT TTGCGGCCAG chr2R:9708912-9709032 16 6.68e-04 TTATTATTAT TTGAGTTT GTTCGGGGAG chr3R:10659634-10659754 34 6.68e-04 gatttcagtt ttcagttt tccgttttaa chr2R:15355580-15355700 35 6.68e-04 GCGGGGGCCT TTGAGTTT TAACTTATGC chr3L:20681592-20681712 21 6.68e-04 GTCCGCTCAT TTCGTTTT TACCAATCAT chr3R:14676231-14676351 101 7.23e-04 GAAAATGCAA TTGTTTTT GGGTGCACAA chr3L:2243835-2243955 28 8.15e-04 GAGGTGACCA TTGATTTT CCCAGCATCC chrX:8262950-8263070 72 8.33e-04 ACAGCGAAAC TTTCTTTT CTTGACATTG chrX:16456699-16456819 52 8.33e-04 GACTGAGCAC TTTCTTTT CGGCTGCATC chr2R:11553173-11553293 85 9.05e-04 CATCGTGACA TTTTATTG GAGGCCCAGA chr2R:18601174-18601294 87 9.37e-04 TACATCCCTA TTCGATTG GTTTAGGTAC chr3L:4308071-4308191 51 9.37e-04 ATTGCCTAAT TTCGATTG TTATTCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14448929-14449049 2e-05 102_[+3]_10 chr4:380607-380727 2e-05 104_[+3]_8 chr3R:9603191-9603311 2e-05 23_[+3]_89 chr2L:15317441-15317561 2e-05 56_[+3]_56 chr2L:18656806-18656926 2e-05 104_[+3]_8 chr2R:10217205-10217325 4.1e-05 64_[+3]_48 chr3R:23340806-23340926 4.1e-05 83_[+3]_29 chr3R:24597785-24597905 4.1e-05 70_[+3]_42 chr3L:18204514-18204634 4.1e-05 35_[+3]_77 chr3L:20690217-20690337 4.1e-05 63_[+3]_49 chr2L:1733574-1733694 7.7e-05 25_[+3]_87 chrX:1262968-1263088 7.7e-05 95_[+3]_17 chr2R:20306038-20306158 7.7e-05 74_[+3]_38 chr2R:15746854-15746974 7.7e-05 24_[+3]_88 chr3R:8860265-8860385 7.7e-05 88_[+3]_24 chr3R:8969685-8969805 7.7e-05 19_[+3]_93 chr3L:19048405-19048525 0.00013 47_[+3]_65 chr2R:18787627-18787747 0.00013 96_[+3]_16 chr2R:16806754-16806874 0.00013 107_[+3]_5 chr2R:12594762-12594882 0.00013 13_[+3]_99 chr2R:7290430-7290550 0.00013 36_[+3]_76 chr3L:20700864-20700984 0.00013 107_[+3]_5 chr3R:12127155-12127275 0.00013 59_[+3]_53 chr3L:20692698-20692818 0.00017 61_[+3]_51 chr3R:9135865-9135985 0.00017 110_[+3]_2 chr3L:19026750-19026870 0.00017 88_[+3]_24 chr3R:6120599-6120719 0.00017 29_[+3]_83 chr3L:20691584-20691704 0.00017 21_[+3]_91 chr2R:11950804-11950924 0.00017 26_[+3]_86 chr2R:6193056-6193176 0.00021 96_[+3]_16 chr3R:9603394-9603514 0.00021 86_[+3]_26 chr2R:16807793-16807913 0.00021 66_[+3]_46 chr3R:12362237-12362357 0.00021 53_[+3]_59 chr2L:7545674-7545794 0.0003 74_[+3]_38 chrX:4673363-4673483 0.0003 16_[+3]_96 chr2R:22139531-22139651 0.0003 29_[+3]_83 chr2R:16611518-16611638 0.0003 70_[+3]_42 chrX:13231099-13231219 0.0003 102_[+3]_10 chr2L:5247753-5247873 0.0003 24_[+3]_88 chr3R:4962096-4962216 0.0003 93_[+3]_19 chr2R:21873192-21873312 0.0003 41_[+3]_71 chrX:16619632-16619752 0.0003 84_[+3]_28 chr3R:13887956-13888076 0.0003 93_[+3]_19 chr2R:21026312-21026432 0.00036 112_[+3] chr2R:8643292-8643412 0.00036 59_[+3]_53 chr3R:23790680-23790800 0.00036 69_[+3]_43 chr2L:14540290-14540410 0.00036 100_[+3]_12 chr3R:13948777-13948897 0.00036 14_[+3]_98 chr2R:13561967-13562087 0.00036 4_[+3]_108 chr3R:7170105-7170225 0.00036 100_[+3]_12 chr3L:14743451-14743571 0.00036 11_[+3]_101 chr2L:4366025-4366145 0.00036 87_[+3]_25 chr3L:3672896-3673016 0.00039 104_[+3]_8 chr3L:10775295-10775415 0.00039 86_[+3]_26 chr3L:3843458-3843578 0.00049 13_[+3]_99 chr3R:18913007-18913127 0.00049 64_[+3]_48 chr2L:16605159-16605279 0.00049 17_[+3]_95 chr3L:20701742-20701862 0.00049 22_[+3]_90 chr3R:9138360-9138480 0.00049 59_[+3]_53 chr2R:16591444-16591564 0.00049 7_[+3]_105 chr2R:8986973-8987093 0.00049 58_[+3]_54 chr3R:31555838-31555958 0.00049 32_[+3]_80 chr3L:513823-513943 0.00049 99_[+3]_13 chr2L:18333718-18333838 0.00049 14_[+3]_98 chr3R:6290409-6290529 0.00049 26_[+3]_86 chr3R:30690369-30690489 0.00049 106_[+3]_6 chr2R:9005599-9005719 0.00049 111_[+3]_1 chr2R:10691875-10691995 0.00055 37_[+3]_75 chr2R:20975821-20975941 0.00055 2_[+3]_110 chr3L:166288-166408 0.00055 58_[+3]_54 chr3L:20687288-20687408 0.00067 60_[+3]_52 chr3L:14552422-14552542 0.00067 68_[+3]_44 chr2R:19256415-19256535 0.00067 5_[+3]_107 chr2R:9708912-9709032 0.00067 15_[+3]_97 chr3R:10659634-10659754 0.00067 33_[+3]_79 chr2R:15355580-15355700 0.00067 34_[+3]_78 chr3L:20681592-20681712 0.00067 20_[+3]_92 chr3R:14676231-14676351 0.00072 100_[+3]_12 chr3L:2243835-2243955 0.00081 27_[+3]_85 chrX:8262950-8263070 0.00083 71_[+3]_41 chrX:16456699-16456819 0.00083 51_[+3]_61 chr2R:11553173-11553293 0.0009 84_[+3]_28 chr2R:18601174-18601294 0.00094 86_[+3]_26 chr3L:4308071-4308191 0.00094 50_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTBDMTTT width=8 seqs=84 chr2L:14448929-14449049 ( 103) TTTGATTT 1 chr4:380607-380727 ( 105) TTTGATTT 1 chr3R:9603191-9603311 ( 24) TTTGATTT 1 chr2L:15317441-15317561 ( 57) TTTGATTT 1 chr2L:18656806-18656926 ( 105) TTTGATTT 1 chr2R:10217205-10217325 ( 65) TTTTATTT 1 chr3R:23340806-23340926 ( 84) TTTTATTT 1 chr3R:24597785-24597905 ( 71) TTTTATTT 1 chr3L:18204514-18204634 ( 36) TTTTATTT 1 chr3L:20690217-20690337 ( 64) TTTTATTT 1 chr2L:1733574-1733694 ( 26) TTGGATTT 1 chrX:1262968-1263088 ( 96) TTGGATTT 1 chr2R:20306038-20306158 ( 75) TTCGATTT 1 chr2R:15746854-15746974 ( 25) TTGGATTT 1 chr3R:8860265-8860385 ( 89) TTCGATTT 1 chr3R:8969685-8969805 ( 20) TTGGATTT 1 chr3L:19048405-19048525 ( 48) TTTGCTTT 1 chr2R:18787627-18787747 ( 97) TTTGCTTT 1 chr2R:16806754-16806874 ( 108) TTCTATTT 1 chr2R:12594762-12594882 ( 14) TTGTATTT 1 chr2R:7290430-7290550 ( 37) TTCTATTT 1 chr3L:20700864-20700984 ( 108) TTTGCTTT 1 chr3R:12127155-12127275 ( 60) TTTGCTTT 1 chr3L:20692698-20692818 ( 62) TTTTCTTT 1 chr3R:9135865-9135985 ( 111) TTTTCTTT 1 chr3L:19026750-19026870 ( 89) TTTTCTTT 1 chr3R:6120599-6120719 ( 30) TTTAATTT 1 chr3L:20691584-20691704 ( 22) TTTAATTT 1 chr2R:11950804-11950924 ( 27) TTTAATTT 1 chr2R:6193056-6193176 ( 97) TTGGCTTT 1 chr3R:9603394-9603514 ( 87) TTGGCTTT 1 chr2R:16807793-16807913 ( 67) TTGGCTTT 1 chr3R:12362237-12362357 ( 54) TTCGCTTT 1 chr2L:7545674-7545794 ( 75) TTGTCTTT 1 chrX:4673363-4673483 ( 17) TTCAATTT 1 chr2R:22139531-22139651 ( 30) TTCTCTTT 1 chr2R:16611518-16611638 ( 71) TTCTCTTT 1 chrX:13231099-13231219 ( 103) TTCAATTT 1 chr2L:5247753-5247873 ( 25) TTCAATTT 1 chr3R:4962096-4962216 ( 94) TTGTCTTT 1 chr2R:21873192-21873312 ( 42) TTGAATTT 1 chrX:16619632-16619752 ( 85) TTCAATTT 1 chr3R:13887956-13888076 ( 94) TTCAATTT 1 chr2R:21026312-21026432 ( 113) TTTTGTTT 1 chr2R:8643292-8643412 ( 60) TTTCATTT 1 chr3R:23790680-23790800 ( 70) TTTCATTT 1 chr2L:14540290-14540410 ( 101) TTTTGTTT 1 chr3R:13948777-13948897 ( 15) TTTTGTTT 1 chr2R:13561967-13562087 ( 5) TTTCATTT 1 chr3R:7170105-7170225 ( 101) TTTCATTT 1 chr3L:14743451-14743571 ( 12) TTTCATTT 1 chr2L:4366025-4366145 ( 88) TTTTGTTT 1 chr3L:3672896-3673016 ( 105) TTGGGTTT 1 chr3L:10775295-10775415 ( 87) TTGGGTTT 1 chr3L:3843458-3843578 ( 14) TTCCATTT 1 chr3R:18913007-18913127 ( 65) TTCACTTT 1 chr2L:16605159-16605279 ( 18) TTGACTTT 1 chr3L:20701742-20701862 ( 23) TTCCATTT 1 chr3R:9138360-9138480 ( 60) TTCTGTTT 1 chr2R:16591444-16591564 ( 8) TTCTGTTT 1 chr2R:8986973-8987093 ( 59) TTCACTTT 1 chr3R:31555838-31555958 ( 33) TTGACTTT 1 chr3L:513823-513943 ( 100) TTGTGTTT 1 chr2L:18333718-18333838 ( 15) TTGTGTTT 1 chr3R:6290409-6290529 ( 27) TTGCATTT 1 chr3R:30690369-30690489 ( 107) TTGACTTT 1 chr2R:9005599-9005719 ( 112) TTCTGTTT 1 chr2R:10691875-10691995 ( 38) TTTGTTTT 1 chr2R:20975821-20975941 ( 3) TTTGTTTT 1 chr3L:166288-166408 ( 59) TTTCCTTT 1 chr3L:20687288-20687408 ( 61) TTCGTTTT 1 chr3L:14552422-14552542 ( 69) TTGAGTTT 1 chr2R:19256415-19256535 ( 6) TTGGTTTT 1 chr2R:9708912-9709032 ( 16) TTGAGTTT 1 chr3R:10659634-10659754 ( 34) TTCAGTTT 1 chr2R:15355580-15355700 ( 35) TTGAGTTT 1 chr3L:20681592-20681712 ( 21) TTCGTTTT 1 chr3R:14676231-14676351 ( 101) TTGTTTTT 1 chr3L:2243835-2243955 ( 28) TTGATTTT 1 chrX:8262950-8263070 ( 72) TTTCTTTT 1 chrX:16456699-16456819 ( 52) TTTCTTTT 1 chr2R:11553173-11553293 ( 85) TTTTATTG 1 chr2R:18601174-18601294 ( 87) TTCGATTG 1 chr3L:4308071-4308191 ( 51) TTCGATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3778 E= 8.0e+000 -1304 -1304 -1304 194 -1304 -1304 -1304 194 -1304 29 33 68 -25 -84 50 25 78 10 -40 -128 -1304 -1304 -1304 194 -1304 -1304 -1304 194 -1304 -1304 -272 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 8.0e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.297619 0.416667 0.226190 0.130952 0.333333 0.309524 0.464286 0.250000 0.178571 0.107143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.035714 0.964286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBDMTTT MEME-3 regular expression -------------------------------------------------------------------------------- TT[TGC][GTA][AC]TTT -------------------------------------------------------------------------------- Time 20.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCGCC MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:a:aa probability G a::a:a:: matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17083239-17083359 65 9.22e-06 TGAAAGGTTT GCCGCGCC TTCTACCGCC chr2L:14699998-14700118 83 9.22e-06 TTAAGAGCTT GCCGCGCC TCAGTTTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17083239-17083359 9.2e-06 64_[+4]_48 chr2L:14699998-14700118 9.2e-06 82_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCGCC width=8 seqs=2 chr2R:17083239-17083359 ( 65) GCCGCGCC 1 chr2L:14699998-14700118 ( 83) GCCGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.3e+005 -765 -765 208 -765 -765 209 -765 -765 -765 209 -765 -765 -765 -765 208 -765 -765 209 -765 -765 -765 -765 208 -765 -765 209 -765 -765 -765 209 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCC MEME-4 regular expression -------------------------------------------------------------------------------- GCCGCGCC -------------------------------------------------------------------------------- Time 26.29 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGCCCA MEME-5 width = 8 sites = 2 llr = 23 E-value = 3.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :a::aaa: probability G a:aa:::: matrix T :::::::: bits 2.1 ******* 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6604536-6604656 9 1.06e-05 GCCGTTAG GCGGCCCA ATGTAATTAT chr3R:30690369-30690489 82 1.06e-05 GCCCTCGAGA GCGGCCCA CGCCACTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6604536-6604656 1.1e-05 8_[+5]_104 chr3R:30690369-30690489 1.1e-05 81_[+5]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCCCA width=8 seqs=2 chr2R:6604536-6604656 ( 9) GCGGCCCA 1 chr3R:30690369-30690489 ( 82) GCGGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.5e+005 -765 -765 208 -765 -765 209 -765 -765 -765 -765 208 -765 -765 -765 208 -765 -765 209 -765 -765 -765 209 -765 -765 -765 209 -765 -765 189 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCCA MEME-5 regular expression -------------------------------------------------------------------------------- GCGGCCCA -------------------------------------------------------------------------------- Time 32.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20671798-20671918 4.26e-02 85_[+1(3.89e-05)]_27 chr3R:12454612-12454732 4.26e-01 120 chr3L:20691385-20691505 1.21e-01 120 chr2L:4366025-4366145 5.69e-01 120 chr3R:13887956-13888076 1.95e-01 120 chr2R:25079400-25079520 8.99e-02 120 chr3L:20690217-20690337 5.23e-02 63_[+3(4.14e-05)]_49 chr3L:20681592-20681712 3.98e-01 120 chr3L:12663832-12663952 9.59e-01 120 chr2R:11950804-11950924 9.46e-03 70_[+2(1.56e-05)]_13_[+2(8.28e-05)]_\ 21 chr2R:19820597-19820717 5.20e-01 120 chr3L:7111122-7111242 1.09e-02 120 chr3L:10204837-10204957 3.65e-01 120 chr2L:12368561-12368681 7.31e-01 120 chr3L:14743451-14743571 2.59e-01 120 chr3R:19583809-19583929 2.43e-01 120 chrX:16619632-16619752 2.83e-02 39_[+2(4.34e-05)]_73 chr3L:19182597-19182717 7.36e-02 120 chr2R:10869066-10869186 8.32e-01 120 chr3L:12705516-12705636 9.72e-01 120 chr3L:18204514-18204634 2.12e-01 35_[+3(4.14e-05)]_77 chr2L:11411141-11411261 5.89e-02 24_[+1(1.04e-05)]_88 chr2R:22315037-22315157 7.06e-01 120 chr3L:21694821-21694941 1.00e+00 120 chr2R:9670612-9670732 3.31e-02 86_[+2(2.92e-05)]_26 chr3R:8969685-8969805 2.97e-02 19_[+3(7.70e-05)]_93 chr2L:846678-846798 1.58e-01 74_[+2(4.34e-05)]_38 chr3L:15254280-15254400 5.00e-01 120 chr3L:20691584-20691704 3.69e-01 120 chr2R:18948776-18948896 2.67e-01 55_[+2(8.28e-05)]_57 chr3R:13885745-13885865 1.89e-01 82_[+1(2.98e-05)]_30 chr2R:9005599-9005719 5.32e-02 120 chr3L:20682628-20682748 7.23e-01 120 chr2L:13883948-13884068 7.99e-02 120 chr3R:8947790-8947910 5.18e-01 120 chr3L:18768069-18768189 7.36e-01 120 chr3R:31662909-31663029 1.00e+00 120 chr3L:166288-166408 3.12e-02 14_[+2(2.92e-05)]_98 chr3R:24597785-24597905 1.65e-01 70_[+3(4.14e-05)]_42 chr3R:12362237-12362357 9.93e-02 120 chr3R:8860265-8860385 5.03e-02 88_[+3(7.70e-05)]_24 chr3R:9915789-9915909 3.00e-03 84_[+1(1.04e-05)]_28 chr3R:7170105-7170225 5.44e-02 67_[+1(6.12e-05)]_45 chr2R:15746854-15746974 1.11e-02 14_[+2(5.69e-05)]_2_[+3(7.70e-05)]_\ 88 chr3R:6301385-6301505 1.20e-01 120 chr3R:8946593-8946713 2.35e-02 107_[+1(1.94e-05)]_5 chr2R:7285863-7285983 3.17e-01 120 chr3R:6120599-6120719 3.86e-01 120 chr3R:30690369-30690489 3.99e-04 81_[+5(1.06e-05)]_31 chr3L:3642784-3642904 1.05e-01 120 chr3L:6783517-6783637 8.28e-01 120 chr3L:8461777-8461897 5.02e-01 120 chr3R:9031607-9031727 5.64e-01 120 chr3R:9906141-9906261 7.69e-01 120 chrX:692916-693036 8.99e-01 120 chr3L:2243835-2243955 6.07e-01 120 chr3R:25002370-25002490 1.75e-01 120 chr3L:16934392-16934512 3.27e-01 120 chr3L:20701064-20701184 7.28e-01 120 chr3L:19026750-19026870 1.43e-02 101_[+1(1.94e-05)]_[+1(1.94e-05)]_3 chr2L:19313601-19313721 4.82e-01 120 chr3L:6310728-6310848 7.44e-01 120 chr2R:13562263-13562383 9.76e-01 120 chr2R:15355580-15355700 7.53e-01 120 chr2R:21873192-21873312 6.07e-01 120 chrX:7296074-7296194 3.81e-01 120 chr2R:17784550-17784670 1.39e-01 120 chr3L:8221954-8222074 6.13e-01 120 chr2R:12461807-12461927 9.95e-01 120 chr3R:23662848-23662968 7.95e-01 120 chr3R:6290409-6290529 1.62e-01 120 chr3L:11515510-11515630 3.37e-01 120 chr2R:11396039-11396159 7.71e-01 120 chr3R:19803314-19803434 4.64e-01 120 chr3R:4962096-4962216 2.41e-01 120 chr3R:12127155-12127275 1.63e-01 120 chr3L:11547448-11547568 3.48e-01 120 chr3R:19301107-19301227 4.57e-01 120 chr2L:5247753-5247873 3.36e-01 120 chr2R:11796309-11796429 9.60e-01 120 chr2L:18656806-18656926 1.03e-03 104_[+3(1.97e-05)]_8 chrX:4437102-4437222 7.96e-01 120 chr3L:20700864-20700984 1.33e-01 120 chr3L:14529663-14529783 9.82e-02 42_[+1(7.17e-05)]_70 chr2R:20306038-20306158 1.68e-01 74_[+3(7.70e-05)]_38 chr2R:13561967-13562087 7.56e-01 120 chrX:13231099-13231219 7.06e-01 120 chr2L:18333718-18333838 7.65e-01 120 chr3L:17984229-17984349 4.83e-01 120 chr2R:16611518-16611638 1.18e-01 120 chr2L:2335043-2335163 4.07e-01 120 chr3L:513823-513943 3.47e-02 18_[+1(5.09e-05)]_94 chr2R:6604536-6604656 8.96e-05 8_[+5(1.06e-05)]_48_[+1(7.17e-05)]_\ 48 chr3R:4451210-4451330 4.81e-01 120 chr2L:11472387-11472507 9.60e-01 120 chr2L:18480678-18480798 1.68e-01 120 chr3L:811883-812003 9.97e-03 67_[+2(1.56e-05)]_45 chr3L:7880437-7880557 5.06e-02 17_[+1(1.94e-05)]_95 chr2L:6695529-6695649 9.09e-01 120 chr2R:22139531-22139651 2.31e-02 86_[+1(1.94e-05)]_26 chr3L:4308071-4308191 5.63e-02 107_[+2(9.47e-05)]_5 chr3R:13289125-13289245 9.69e-01 120 chr3L:12616122-12616242 4.81e-02 120 chr3R:10035201-10035321 6.05e-01 120 chr3R:14431051-14431171 6.02e-01 120 chr3R:13909215-13909335 8.36e-01 120 chrX:4673363-4673483 2.84e-01 120 chr3R:23340806-23340926 1.51e-01 83_[+3(4.14e-05)]_29 chr3R:14676231-14676351 3.29e-01 120 chr2L:6219132-6219252 9.27e-01 120 chr2R:19231060-19231180 6.53e-02 69_[+2(2.92e-05)]_43 chr2R:7290430-7290550 7.98e-02 120 chr3R:31555838-31555958 3.18e-01 120 chr3L:12705733-12705853 5.10e-02 38_[+2(1.56e-05)]_74 chr2L:21245352-21245472 1.38e-01 120 chr2L:14438582-14438702 6.67e-02 30_[+1(1.94e-05)]_82 chr3L:15007430-15007550 7.78e-01 120 chr2R:8059206-8059326 9.43e-01 120 chr2R:11553173-11553293 5.67e-02 120 chr2R:8986973-8987093 2.28e-03 120 chr2R:16821803-16821923 9.87e-01 120 chr3L:2398748-2398868 9.74e-01 120 chr3R:10659634-10659754 6.94e-03 85_[+5(3.94e-05)]_27 chr3R:16092337-16092457 8.42e-01 120 chrX:1262968-1263088 2.84e-02 95_[+3(7.70e-05)]_17 chr2L:15317441-15317561 2.71e-03 56_[+3(1.97e-05)]_56 chr3L:6778173-6778293 7.13e-01 120 chr2R:16591444-16591564 3.38e-01 120 chr3R:9138360-9138480 1.79e-01 120 chr2R:16807793-16807913 5.74e-02 120 chrX:4198890-4199010 1.70e-01 120 chr3R:9135865-9135985 3.90e-01 120 chr3R:31324624-31324744 7.58e-01 120 chr3R:6329932-6330052 3.89e-01 120 chr3R:6686315-6686435 8.05e-01 120 chr2L:1463441-1463561 9.81e-01 120 chr3L:10775295-10775415 3.14e-01 120 chr2R:24550996-24551116 4.65e-01 120 chr3L:16630439-16630559 8.89e-01 120 chr3L:17962795-17962915 1.29e-01 22_[+5(3.94e-05)]_90 chr3L:20701742-20701862 2.31e-02 102_[+2(2.92e-05)]_10 chr3R:9603191-9603311 8.17e-03 23_[+3(1.97e-05)]_89 chr3L:21066364-21066484 9.71e-01 120 chrX:16456699-16456819 3.44e-01 120 chr3R:14483119-14483239 6.01e-01 120 chrX:8262950-8263070 7.43e-01 120 chr3R:23911196-23911316 1.20e-01 98_[+2(1.56e-05)]_14 chr2R:20633358-20633478 4.34e-01 120 chr2L:14656623-14656743 6.72e-02 29_[+1(3.89e-05)]_83 chr3R:8160554-8160674 5.96e-01 120 chr3L:6825947-6826067 2.81e-01 120 chr3R:13888155-13888275 9.87e-01 120 chr2R:9708912-9709032 4.67e-01 120 chr3R:5389204-5389324 8.55e-02 120 chr2R:17784755-17784875 1.11e-01 120 chr2R:12594762-12594882 7.16e-03 120 chr3R:19348255-19348375 1.17e-02 47_[+2(2.92e-05)]_65 chrX:6797254-6797374 7.36e-01 120 chr3R:9603394-9603514 4.16e-01 120 chr2L:16710822-16710942 9.98e-01 120 chr3L:20665588-20665708 1.22e-01 120 chr3L:15203603-15203723 9.52e-01 120 chr3L:5127745-5127865 7.26e-04 15_[+1(1.04e-05)]_97 chr2L:21024423-21024543 6.53e-02 81_[+1(5.09e-05)]_31 chr2L:3591071-3591191 3.23e-01 120 chr2L:20004512-20004632 1.00e+00 120 chr2L:1733574-1733694 1.88e-01 25_[+3(7.70e-05)]_87 chr3R:5683475-5683595 4.20e-01 120 chr3R:22729125-22729245 2.53e-01 120 chr3R:4726450-4726570 4.31e-01 41_[+2(9.47e-05)]_71 chr2L:16605159-16605279 5.54e-02 120 chr3L:8928887-8929007 6.55e-02 120 chr2R:16806754-16806874 5.29e-01 120 chr2R:6193056-6193176 3.75e-02 120 chr2R:17145816-17145936 9.72e-01 120 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************