******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/kay.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:17636-17756 1.0000 120 chrM:18546-18666 1.0000 120 chrM:17286-17406 1.0000 120 chrM:16098-16218 1.0000 120 chrM:6421-6541 1.0000 120 chrM:15151-15271 1.0000 120 chrM:19296-19416 1.0000 120 chrM:15350-15470 1.0000 120 chr2R:12952369-12952489 1.0000 120 chrX:3675697-3675817 1.0000 120 chr2L:16315923-16316043 1.0000 120 chr2R:15571411-15571531 1.0000 120 chr3R:16280120-16280240 1.0000 120 chrM:821-941 1.0000 120 chr2L:480716-480836 1.0000 120 chr3L:18044783-18044903 1.0000 120 chr2L:16269872-16269992 1.0000 120 chr3R:16652258-16652378 1.0000 120 chrM:4237-4357 1.0000 120 chr3L:225241-225361 1.0000 120 chr3L:19900664-19900784 1.0000 120 chr2R:10156237-10156357 1.0000 120 chr3L:18683968-18684088 1.0000 120 chr3R:23190445-23190565 1.0000 120 chr3R:14749165-14749285 1.0000 120 chrM:6732-6852 1.0000 120 chr2L:19548257-19548377 1.0000 120 chr3L:18800553-18800673 1.0000 120 chrM:13968-14088 1.0000 120 chr2R:11206690-11206810 1.0000 120 chr3R:16453052-16453172 1.0000 120 chr3R:23993598-23993718 1.0000 120 chrM:9914-10034 1.0000 120 chr2R:16270692-16270812 1.0000 120 chr3L:17947284-17947404 1.0000 120 chrM:6933-7053 1.0000 120 chr3L:16613111-16613231 1.0000 120 chrM:1525-1645 1.0000 120 chrX:8560167-8560287 1.0000 120 chr3L:12773512-12773632 1.0000 120 chrX:22433030-22433150 1.0000 120 chr3L:7529381-7529501 1.0000 120 chrM:6204-6324 1.0000 120 chr2R:7779763-7779883 1.0000 120 chrM:2087-2207 1.0000 120 chr2R:10252338-10252458 1.0000 120 chrM:213-333 1.0000 120 chrM:426-546 1.0000 120 chr2R:9303311-9303431 1.0000 120 chrM:13268-13388 1.0000 120 chr2L:2365146-2365266 1.0000 120 chrM:11339-11459 1.0000 120 chrX:2742191-2742311 1.0000 120 chr3L:4413936-4414056 1.0000 120 chr2R:9143892-9144012 1.0000 120 chrM:5478-5598 1.0000 120 chr3R:9351710-9351830 1.0000 120 chrM:12156-12276 1.0000 120 chr2L:3158804-3158924 1.0000 120 chr3R:9954770-9954890 1.0000 120 chrM:8491-8611 1.0000 120 chrM:10663-10783 1.0000 120 chr2R:9544191-9544311 1.0000 120 chrM:2697-2817 1.0000 120 chrM:2898-3018 1.0000 120 chrM:12358-12478 1.0000 120 chrM:7382-7502 1.0000 120 chrM:3543-3663 1.0000 120 chr3L:10868240-10868360 1.0000 120 chr3L:13964996-13965116 1.0000 120 chr3L:9349513-9349633 1.0000 120 chrM:1727-1847 1.0000 120 chr2R:23072432-23072552 1.0000 120 chr2R:16103243-16103363 1.0000 120 chrM:5277-5397 1.0000 120 chr3R:26947430-26947550 1.0000 120 chrM:8715-8835 1.0000 120 chr3L:12850093-12850213 1.0000 120 chr2R:8237685-8237805 1.0000 120 chrM:10866-10986 1.0000 120 chr3L:16800327-16800447 1.0000 120 chr2L:5305353-5305473 1.0000 120 chr3R:29869225-29869345 1.0000 120 chr3R:20783836-20783956 1.0000 120 chr2L:6083080-6083200 1.0000 120 chr2L:3478106-3478226 1.0000 120 chr3R:18917011-18917131 1.0000 120 chr3R:8113430-8113550 1.0000 120 chr3R:8119938-8120058 1.0000 120 chr2R:19468156-19468276 1.0000 120 chr2L:7828302-7828422 1.0000 120 chr2L:9175309-9175429 1.0000 120 chr3L:7435319-7435439 1.0000 120 chr2L:5980257-5980377 1.0000 120 chr3R:5672983-5673103 1.0000 120 chr2R:10096954-10097074 1.0000 120 chr3L:20471284-20471404 1.0000 120 chr3L:10332160-10332280 1.0000 120 chr3L:15554067-15554187 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_kay/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/kay.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 99 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 11880 N= 99 sample: seed= 0 hsfrac= 0 searchsize= 11880 norand= no csites= 1000 Letter frequencies in dataset: A 0.319 C 0.179 G 0.168 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.319 C 0.179 G 0.168 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DSAGCKGV MEME-1 width = 8 sites = 51 llr = 361 E-value = 1.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:6::1:3 pos.-specific C 151:8::4 probability G 451a:3a3 matrix T 2:2:25:: bits 2.6 * * 2.3 * * 2.1 * * 1.8 ** * Relative 1.5 * ** * Entropy 1.3 * ** * (10.2 bits) 1.0 * ** * 0.8 * ** ** 0.5 * ***** 0.3 ******** 0.0 -------- Multilevel GCAGCTGC consensus AGT G G sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10332160-10332280 83 1.11e-05 CATGTTGACT GCAGCTGC TGCAGAATTG chr3L:4413936-4414056 64 1.11e-05 GTTGGGAGGG GGAGCGGG CTAGGGGGCG chr3L:16613111-16613231 52 1.11e-05 GACTCAGGGG GGAGCTGC ACGCCCCCTG chrX:3675697-3675817 44 1.11e-05 TGTACAGGGT GGAGCGGG GGGGGGGGGG chrM:1727-1847 101 1.64e-05 AGTTGAAAAT GGAGCTGG GACAGGATGA chr2R:9143892-9144012 82 1.64e-05 TCTCCCTTAC GCAGCTGG CCACTCTGGT chr3L:7435319-7435439 41 2.68e-05 aacgtgagcg agagcgGC ACTGGCACAG chr3L:13964996-13965116 102 5.25e-05 AACTTTGCCA ACAGCTGC AATAATTACT chrM:3543-3663 2 5.25e-05 A ACAGCTGC TGATGTTATT chr2R:15571411-15571531 40 5.25e-05 AACCAACATC GCAGCTGA CAGTCTGCTG chr2R:8237685-8237805 12 6.54e-05 CATGTGCATT GCTGCGGC AGTATGGGTG chr2R:10252338-10252458 75 6.54e-05 TTGAACTATT AGAGCTGG AACCAAGCCC chr3L:12773512-12773632 58 6.54e-05 AAAAGTTAAT AGAGCTGG GCGGTGTTCC chr3L:10868240-10868360 113 1.05e-04 gtgtttgCGC TGAGCTGC chr2R:16103243-16103363 85 1.29e-04 AGTGTGTGCG CGAGCGGG AGAGGGCTAT chrM:2087-2207 44 1.29e-04 ATTTTTTGAC CCAGCGGG AGGAGGAGAT chrM:1525-1645 15 1.29e-04 TTTTGGAGCT TGAGCTGG AATAGTTGGA chr2L:16269872-16269992 46 1.29e-04 CGTCATCAGC TGAGCTGG CACTCGAAAG chr2L:5305353-5305473 78 1.40e-04 CCCACCCCCC GCAGCAGG CAATCACGTT chr2L:7828302-7828422 63 1.41e-04 TCGCACAGTA GCGGCGGC TTGCGTCGCC chr3L:12850093-12850213 59 1.83e-04 CGATAATTTC GGCGCTGC CACACTTTTC chrM:10663-10783 4 1.83e-04 TAC ACAGCTGA TATTAATCTA chrX:2742191-2742311 77 1.83e-04 ATTGAGTAAT ACAGCTGA TTCATAAGTG chr2R:9544191-9544311 94 1.97e-04 CGACCTATTT ACTGCGGC GTATCCATCA chrM:13268-13388 46 1.97e-04 CAGTCAAAAT ACTGCGGC CATTTAAAAT chr2R:23072432-23072552 94 2.24e-04 AGGTGAGGGG GGTGCTGA AATCTATGCT chr2R:10156237-10156357 43 2.24e-04 CCCAGCGCAA AGTGCTGC CCATCACCAT chr2R:10096954-10097074 104 2.75e-04 CGGTGATTAA GCAGTGGC AGTGCAGAA chr2R:19468156-19468276 81 2.75e-04 CGAGGGCATC TCAGCTGA GCTTGTGCAA chr3R:16652258-16652378 57 2.75e-04 TGACTCATAA TCAGCTGA TTAGTCATAA chr3L:20471284-20471404 49 3.27e-04 TAACCAATTC GGAGCAGA GCAGTGTGTT chr2L:5980257-5980377 84 3.27e-04 CGGTGCGCCT GGAGTGGG TGTGTGAGCG chr2L:6083080-6083200 103 3.27e-04 tcagtgcaag agAGCAGC ACAATTCTAA chrM:2898-3018 67 3.27e-04 AAATACTCCA CCAGCTGA ACATAGATAT chr3R:9351710-9351830 34 3.67e-04 CATTTTTCAC TCTGCTGC GTAAGAGAGC chr3L:7529381-7529501 100 3.98e-04 TTTGCGAGGG GGGGCGGA TGAGTAATGA chrX:8560167-8560287 75 3.98e-04 CGTCTGATTA GCGGCGGA ACTGTACAGT chr2L:16315923-16316043 85 3.98e-04 tatttttttt tCTGCTGG GCTACACGTG chr3R:23993598-23993718 46 4.90e-04 GCGATCACAC ACTGCGGA TTGCTCAGAG chr3R:26947430-26947550 77 5.18e-04 AAAATTAATT CGAGCAGG TTCTACCGAG chr3R:8113430-8113550 14 5.75e-04 ACGCGCCTCC TGCGCTGC CCGAGTGTTA chr3R:8119938-8120058 97 6.71e-04 GCCgagcgag agagtggg agagcgaact chr2L:19548257-19548377 49 6.71e-04 CAAGAGAAAC GCAGTTGA GCGAATATCT chr3R:16280120-16280240 74 6.71e-04 TAGAAACTTC ACAGTTGC GACTGCGCTT chr2R:12952369-12952489 37 6.71e-04 AAAAAGAAGT GCAGTTGA TATTGGGACC chr3R:20783836-20783956 36 7.81e-04 CTTTTCTTGC ACTGCAGC CCCAAGTGCC chr3L:18683968-18684088 111 7.81e-04 CCCAGCAACA GCTGTTGC CC chr3L:9349513-9349633 96 9.49e-04 CGTACTCACT TCAGTTGG CATCGGACGT chr2L:3158804-3158924 89 9.85e-04 TTCACCCAGA TGTGCAGC GCATTTCGAT chr2L:3478106-3478226 94 1.02e-03 ACCTCCGAGG TGTGCAGG CTGCAACAAA chr3R:29869225-29869345 36 1.09e-03 ATTTAAAATA CGCGCGGA CTCTCGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10332160-10332280 1.1e-05 82_[+1]_30 chr3L:4413936-4414056 1.1e-05 63_[+1]_49 chr3L:16613111-16613231 1.1e-05 51_[+1]_61 chrX:3675697-3675817 1.1e-05 43_[+1]_69 chrM:1727-1847 1.6e-05 100_[+1]_12 chr2R:9143892-9144012 1.6e-05 81_[+1]_31 chr3L:7435319-7435439 2.7e-05 40_[+1]_72 chr3L:13964996-13965116 5.2e-05 101_[+1]_11 chrM:3543-3663 5.2e-05 1_[+1]_111 chr2R:15571411-15571531 5.2e-05 39_[+1]_73 chr2R:8237685-8237805 6.5e-05 11_[+1]_101 chr2R:10252338-10252458 6.5e-05 74_[+1]_38 chr3L:12773512-12773632 6.5e-05 57_[+1]_55 chr3L:10868240-10868360 0.0001 112_[+1] chr2R:16103243-16103363 0.00013 84_[+1]_28 chrM:2087-2207 0.00013 43_[+1]_69 chrM:1525-1645 0.00013 14_[+1]_98 chr2L:16269872-16269992 0.00013 45_[+1]_67 chr2L:5305353-5305473 0.00014 77_[+1]_35 chr2L:7828302-7828422 0.00014 62_[+1]_50 chr3L:12850093-12850213 0.00018 58_[+1]_54 chrM:10663-10783 0.00018 3_[+1]_109 chrX:2742191-2742311 0.00018 76_[+1]_36 chr2R:9544191-9544311 0.0002 93_[+1]_19 chrM:13268-13388 0.0002 45_[+1]_67 chr2R:23072432-23072552 0.00022 93_[+1]_19 chr2R:10156237-10156357 0.00022 42_[+1]_70 chr2R:10096954-10097074 0.00028 103_[+1]_9 chr2R:19468156-19468276 0.00028 80_[+1]_32 chr3R:16652258-16652378 0.00028 56_[+1]_56 chr3L:20471284-20471404 0.00033 48_[+1]_64 chr2L:5980257-5980377 0.00033 83_[+1]_29 chr2L:6083080-6083200 0.00033 102_[+1]_10 chrM:2898-3018 0.00033 66_[+1]_46 chr3R:9351710-9351830 0.00037 33_[+1]_79 chr3L:7529381-7529501 0.0004 99_[+1]_13 chrX:8560167-8560287 0.0004 74_[+1]_38 chr2L:16315923-16316043 0.0004 84_[+1]_28 chr3R:23993598-23993718 0.00049 45_[+1]_67 chr3R:26947430-26947550 0.00052 76_[+1]_36 chr3R:8113430-8113550 0.00058 13_[+1]_99 chr3R:8119938-8120058 0.00067 96_[+1]_16 chr2L:19548257-19548377 0.00067 48_[+1]_64 chr3R:16280120-16280240 0.00067 73_[+1]_39 chr2R:12952369-12952489 0.00067 36_[+1]_76 chr3R:20783836-20783956 0.00078 35_[+1]_77 chr3L:18683968-18684088 0.00078 110_[+1]_2 chr3L:9349513-9349633 0.00095 95_[+1]_17 chr2L:3158804-3158924 0.00099 88_[+1]_24 chr2L:3478106-3478226 0.001 93_[+1]_19 chr3R:29869225-29869345 0.0011 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DSAGCKGV width=8 seqs=51 chr3L:10332160-10332280 ( 83) GCAGCTGC 1 chr3L:4413936-4414056 ( 64) GGAGCGGG 1 chr3L:16613111-16613231 ( 52) GGAGCTGC 1 chrX:3675697-3675817 ( 44) GGAGCGGG 1 chrM:1727-1847 ( 101) GGAGCTGG 1 chr2R:9143892-9144012 ( 82) GCAGCTGG 1 chr3L:7435319-7435439 ( 41) AGAGCGGC 1 chr3L:13964996-13965116 ( 102) ACAGCTGC 1 chrM:3543-3663 ( 2) ACAGCTGC 1 chr2R:15571411-15571531 ( 40) GCAGCTGA 1 chr2R:8237685-8237805 ( 12) GCTGCGGC 1 chr2R:10252338-10252458 ( 75) AGAGCTGG 1 chr3L:12773512-12773632 ( 58) AGAGCTGG 1 chr3L:10868240-10868360 ( 113) TGAGCTGC 1 chr2R:16103243-16103363 ( 85) CGAGCGGG 1 chrM:2087-2207 ( 44) CCAGCGGG 1 chrM:1525-1645 ( 15) TGAGCTGG 1 chr2L:16269872-16269992 ( 46) TGAGCTGG 1 chr2L:5305353-5305473 ( 78) GCAGCAGG 1 chr2L:7828302-7828422 ( 63) GCGGCGGC 1 chr3L:12850093-12850213 ( 59) GGCGCTGC 1 chrM:10663-10783 ( 4) ACAGCTGA 1 chrX:2742191-2742311 ( 77) ACAGCTGA 1 chr2R:9544191-9544311 ( 94) ACTGCGGC 1 chrM:13268-13388 ( 46) ACTGCGGC 1 chr2R:23072432-23072552 ( 94) GGTGCTGA 1 chr2R:10156237-10156357 ( 43) AGTGCTGC 1 chr2R:10096954-10097074 ( 104) GCAGTGGC 1 chr2R:19468156-19468276 ( 81) TCAGCTGA 1 chr3R:16652258-16652378 ( 57) TCAGCTGA 1 chr3L:20471284-20471404 ( 49) GGAGCAGA 1 chr2L:5980257-5980377 ( 84) GGAGTGGG 1 chr2L:6083080-6083200 ( 103) AGAGCAGC 1 chrM:2898-3018 ( 67) CCAGCTGA 1 chr3R:9351710-9351830 ( 34) TCTGCTGC 1 chr3L:7529381-7529501 ( 100) GGGGCGGA 1 chrX:8560167-8560287 ( 75) GCGGCGGA 1 chr2L:16315923-16316043 ( 85) TCTGCTGG 1 chr3R:23993598-23993718 ( 46) ACTGCGGA 1 chr3R:26947430-26947550 ( 77) CGAGCAGG 1 chr3R:8113430-8113550 ( 14) TGCGCTGC 1 chr3R:8119938-8120058 ( 97) AGAGTGGG 1 chr2L:19548257-19548377 ( 49) GCAGTTGA 1 chr3R:16280120-16280240 ( 74) ACAGTTGC 1 chr2R:12952369-12952489 ( 37) GCAGTTGA 1 chr3R:20783836-20783956 ( 36) ACTGCAGC 1 chr3L:18683968-18684088 ( 111) GCTGTTGC 1 chr3L:9349513-9349633 ( 96) TCAGTTGG 1 chr2L:3158804-3158924 ( 89) TGTGCAGC 1 chr2L:3478106-3478226 ( 94) TGTGCAGG 1 chr3R:29869225-29869345 ( 36) CGCGCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 11187 bayes= 8.923 E= 1.8e-005 -12 -87 123 -63 -1232 156 149 -1232 102 -161 -151 -51 -1232 -1232 258 -1232 -1232 223 -1232 -109 -122 -1232 90 72 -1232 -1232 258 -1232 -22 113 99 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.8e-005 0.294118 0.098039 0.392157 0.215686 0.000000 0.529412 0.470588 0.000000 0.647059 0.058824 0.058824 0.235294 0.000000 0.000000 1.000000 0.000000 0.000000 0.843137 0.000000 0.156863 0.137255 0.000000 0.313725 0.549020 0.000000 0.000000 1.000000 0.000000 0.274510 0.392157 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSAGCKGV MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CG][AT]GC[TG]G[CGA] -------------------------------------------------------------------------------- Time 1.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GDGTGBGK MEME-2 width = 8 sites = 17 llr = 154 E-value = 1.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::1:: pos.-specific C 1::::4:: probability G 94a2a4a5 matrix T :4:8:2:5 bits 2.6 * * * 2.3 * * * * 2.1 * * * * 1.8 * * * * Relative 1.5 * * * * Entropy 1.3 * * * * (13.1 bits) 1.0 * *** ** 0.8 * *** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGTGCGG consensus T G T sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19468156-19468276 30 1.26e-06 AGGAGGGTGG GGGTGGGG ACAGGAAAAG chr2L:16269872-16269992 96 8.26e-06 GCATATCTGT GTGTGGGG CGTAGCGGTA chrX:3675697-3675817 53 8.26e-06 TGGAGCGGGG GGGGGGGG GTGGTATTAG chr2R:8237685-8237805 25 1.43e-05 GCGGCAGTAT GGGTGCGT GTATCTCTGT chr3L:9349513-9349633 81 1.43e-05 ACTTGAGATC GGGTGCGT ACTCACTTCA chr3L:4413936-4414056 75 1.43e-05 GAGCGGGCTA GGGGGCGG GAAAGTGTGT chr2L:5980257-5980377 24 1.92e-05 CACTGCTTTC GAGTGGGG CAGAGAGTGA chrX:2742191-2742311 102 2.92e-05 GTGCACACAT GTGTGGGT AAGCCATAAA chr3R:20783836-20783956 76 3.72e-05 ACATACATAG GTGTGCGT GTTTGCAATA chr2L:5305353-5305473 12 3.72e-05 CCTTACGTGT GTGTGCGT TCTTGTGTGT chr2R:10156237-10156357 71 5.44e-05 AAAACGCGGA GAGTGGGT AAATTTTAAA chr3L:10332160-10332280 13 6.56e-05 TACGAGCAAC GAGTGTGG TGGGTTCTCG chr3L:16613111-16613231 5 7.05e-05 TTTT GGGTGAGG TTGCCGCCCT chr3L:10868240-10868360 90 8.94e-05 Ttgtgttgtt gtgtgtgt agtgtgtgtt chr3L:7529381-7529501 69 8.94e-05 TGCCAGGGGC GTGGGTGG AAACGGGTTT chr3R:16652258-16652378 38 9.32e-05 AATGAAATTG CGGTGCGG TTGACTCATA chr3L:19900664-19900784 41 1.08e-04 GCATTTGTTC GAGTGTGT GACTCACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19468156-19468276 1.3e-06 29_[+2]_83 chr2L:16269872-16269992 8.3e-06 95_[+2]_17 chrX:3675697-3675817 8.3e-06 52_[+2]_60 chr2R:8237685-8237805 1.4e-05 24_[+2]_88 chr3L:9349513-9349633 1.4e-05 80_[+2]_32 chr3L:4413936-4414056 1.4e-05 74_[+2]_38 chr2L:5980257-5980377 1.9e-05 23_[+2]_89 chrX:2742191-2742311 2.9e-05 101_[+2]_11 chr3R:20783836-20783956 3.7e-05 75_[+2]_37 chr2L:5305353-5305473 3.7e-05 11_[+2]_101 chr2R:10156237-10156357 5.4e-05 70_[+2]_42 chr3L:10332160-10332280 6.6e-05 12_[+2]_100 chr3L:16613111-16613231 7e-05 4_[+2]_108 chr3L:10868240-10868360 8.9e-05 89_[+2]_23 chr3L:7529381-7529501 8.9e-05 68_[+2]_44 chr3R:16652258-16652378 9.3e-05 37_[+2]_75 chr3L:19900664-19900784 0.00011 40_[+2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GDGTGBGK width=8 seqs=17 chr2R:19468156-19468276 ( 30) GGGTGGGG 1 chr2L:16269872-16269992 ( 96) GTGTGGGG 1 chrX:3675697-3675817 ( 53) GGGGGGGG 1 chr2R:8237685-8237805 ( 25) GGGTGCGT 1 chr3L:9349513-9349633 ( 81) GGGTGCGT 1 chr3L:4413936-4414056 ( 75) GGGGGCGG 1 chr2L:5980257-5980377 ( 24) GAGTGGGG 1 chrX:2742191-2742311 ( 102) GTGTGGGT 1 chr3R:20783836-20783956 ( 76) GTGTGCGT 1 chr2L:5305353-5305473 ( 12) GTGTGCGT 1 chr2R:10156237-10156357 ( 71) GAGTGGGT 1 chr3L:10332160-10332280 ( 13) GAGTGTGG 1 chr3L:16613111-16613231 ( 5) GGGTGAGG 1 chr3L:10868240-10868360 ( 90) GTGTGTGT 1 chr3L:7529381-7529501 ( 69) GTGGGTGG 1 chr3R:16652258-16652378 ( 38) CGGTGCGG 1 chr3L:19900664-19900784 ( 41) GAGTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 11187 bayes= 11.127 E= 1.6e+000 -1073 -161 249 -1073 -44 -1073 130 8 -1073 -1073 258 -1073 -1073 -1073 7 130 -1073 -1073 258 -1073 -243 98 107 -51 -1073 -1073 258 -1073 -1073 -1073 166 49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.6e+000 0.000000 0.058824 0.941176 0.000000 0.235294 0.000000 0.411765 0.352941 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 1.000000 0.000000 0.058824 0.352941 0.352941 0.235294 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.529412 0.470588 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGTGBGK MEME-2 regular expression -------------------------------------------------------------------------------- G[GTA]GTG[CGT]G[GT] -------------------------------------------------------------------------------- Time 3.22 secs. ******************************************************************************** ******************************************************************************** MOTIF RMGMSAGC MEME-3 width = 8 sites = 24 llr = 200 E-value = 8.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3434:7:: pos.-specific C :6:65:2a probability G 7:7:538: matrix T :::::::: bits 2.6 * 2.3 * 2.1 * 1.8 ** Relative 1.5 * * ** Entropy 1.3 * *** ** (12.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCAGC consensus AAAAGGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10332160-10332280 63 1.55e-06 CCACAAAAGC GCGCCAGC AACATGTTGA chr2L:9175309-9175429 98 3.83e-06 TTTGCGTTTT GCGCCGGC TACAAAGCTA chr2L:5980257-5980377 40 1.42e-05 GGCAGAGAGT GAGCGAGC GAGAGCCGTA chr3L:7435319-7435439 22 1.42e-05 CACAAAgagc gagcgagc gaacgtgagc chr2R:16103243-16103363 112 1.42e-05 TCGGAAAAGA GAGCGAGC G chr2L:7828302-7828422 21 1.96e-05 AGCGGAGAGC GCGAGAGC ATGATTCATG chr3L:19900664-19900784 25 2.42e-05 TGCGCTCTCA ACGCCAGC ATTTGTTCGA chr2R:19468156-19468276 70 2.56e-05 ACGAGAGAGA GCGAGGGC ATCTCAGCTG chr3R:5672983-5673103 104 3.53e-05 AGAGCAAAAA GCACCAGC GACAGTCTG chrX:2742191-2742311 55 3.53e-05 TTTTCGCGCT ACGCCGGC AGCGATTGAG chrX:8560167-8560287 3 4.83e-05 GG GCACGGGC AAAAACTCCC chr2L:3158804-3158924 47 5.55e-05 AAGGTGAGAA GAGAGAGC AAGGTTCCCT chr3R:16453052-16453172 50 9.16e-05 ctctctcact GAACCAGC CGTGAGTCAT chr2L:2365146-2365266 31 1.21e-04 GAGCTTGCAG GAACCGGC TCCATTGGTG chr3L:18800553-18800673 47 1.21e-04 GCACACACAC GCGACGCC AAACGCATTT chr3L:17947284-17947404 46 1.24e-04 AATTACTCAT ACGCCACC GATATCGCTG chr2L:5305353-5305473 57 1.38e-04 GAACCCGCTG GCAAGAGC TACCCCACCC chrM:7382-7502 70 1.51e-04 TAATAAATAT ACACCAGC TGTAACTAAT chr2L:16269872-16269992 12 1.51e-04 AATAGCAAAT ACGCCGCC GGCACGAGAG chr3R:29869225-29869345 75 1.68e-04 TCACGAGCAA GCACGACC AATAGCCCAT chr2L:3478106-3478226 43 1.87e-04 GAAGCCCCTC AAGACAGC CCCCCACCAT chr2R:23072432-23072552 16 1.87e-04 GGCTTAAGCC GAGACACC ACCCCGTGAA chr3R:18917011-18917131 84 2.18e-04 CACACATTCA AAGAGAGC TTACTAATAC chr3R:9351710-9351830 44 2.18e-04 TCTGCTGCGT AAGAGAGC AAACAAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10332160-10332280 1.6e-06 62_[+3]_50 chr2L:9175309-9175429 3.8e-06 97_[+3]_15 chr2L:5980257-5980377 1.4e-05 39_[+3]_73 chr3L:7435319-7435439 1.4e-05 21_[+3]_91 chr2R:16103243-16103363 1.4e-05 111_[+3]_1 chr2L:7828302-7828422 2e-05 20_[+3]_92 chr3L:19900664-19900784 2.4e-05 24_[+3]_88 chr2R:19468156-19468276 2.6e-05 69_[+3]_43 chr3R:5672983-5673103 3.5e-05 103_[+3]_9 chrX:2742191-2742311 3.5e-05 54_[+3]_58 chrX:8560167-8560287 4.8e-05 2_[+3]_110 chr2L:3158804-3158924 5.5e-05 46_[+3]_66 chr3R:16453052-16453172 9.2e-05 49_[+3]_63 chr2L:2365146-2365266 0.00012 30_[+3]_82 chr3L:18800553-18800673 0.00012 46_[+3]_66 chr3L:17947284-17947404 0.00012 45_[+3]_67 chr2L:5305353-5305473 0.00014 56_[+3]_56 chrM:7382-7502 0.00015 69_[+3]_43 chr2L:16269872-16269992 0.00015 11_[+3]_101 chr3R:29869225-29869345 0.00017 74_[+3]_38 chr2L:3478106-3478226 0.00019 42_[+3]_70 chr2R:23072432-23072552 0.00019 15_[+3]_97 chr3R:18917011-18917131 0.00022 83_[+3]_29 chr3R:9351710-9351830 0.00022 43_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RMGMSAGC width=8 seqs=24 chr3L:10332160-10332280 ( 63) GCGCCAGC 1 chr2L:9175309-9175429 ( 98) GCGCCGGC 1 chr2L:5980257-5980377 ( 40) GAGCGAGC 1 chr3L:7435319-7435439 ( 22) GAGCGAGC 1 chr2R:16103243-16103363 ( 112) GAGCGAGC 1 chr2L:7828302-7828422 ( 21) GCGAGAGC 1 chr3L:19900664-19900784 ( 25) ACGCCAGC 1 chr2R:19468156-19468276 ( 70) GCGAGGGC 1 chr3R:5672983-5673103 ( 104) GCACCAGC 1 chrX:2742191-2742311 ( 55) ACGCCGGC 1 chrX:8560167-8560287 ( 3) GCACGGGC 1 chr2L:3158804-3158924 ( 47) GAGAGAGC 1 chr3R:16453052-16453172 ( 50) GAACCAGC 1 chr2L:2365146-2365266 ( 31) GAACCGGC 1 chr3L:18800553-18800673 ( 47) GCGACGCC 1 chr3L:17947284-17947404 ( 46) ACGCCACC 1 chr2L:5305353-5305473 ( 57) GCAAGAGC 1 chrM:7382-7502 ( 70) ACACCAGC 1 chr2L:16269872-16269992 ( 12) ACGCCGCC 1 chr3R:29869225-29869345 ( 75) GCACGACC 1 chr2L:3478106-3478226 ( 43) AAGACAGC 1 chr2R:23072432-23072552 ( 16) GAGACACC 1 chr3R:18917011-18917131 ( 84) AAGAGAGC 1 chr3R:9351710-9351830 ( 44) AAGAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 11187 bayes= 9.96266 E= 8.1e+000 6 -1123 199 -1123 39 170 -1123 -1123 -13 -1123 208 -1123 23 180 -1123 -1123 -1123 160 145 -1123 115 -1123 80 -1123 -1123 22 224 -1123 -1123 248 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.1e+000 0.333333 0.000000 0.666667 0.000000 0.416667 0.583333 0.000000 0.000000 0.291667 0.000000 0.708333 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 0.541667 0.458333 0.000000 0.708333 0.000000 0.291667 0.000000 0.000000 0.208333 0.791667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMGMSAGC MEME-3 regular expression -------------------------------------------------------------------------------- [GA][CA][GA][CA][CG][AG][GC]C -------------------------------------------------------------------------------- Time 4.65 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGASTCA MEME-4 width = 8 sites = 23 llr = 190 E-value = 7.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 7::a1::a pos.-specific C ::::4:a: probability G 3:7:4::: matrix T :a3::a:: bits 2.6 * 2.3 * 2.1 * 1.8 * Relative 1.5 * * *** Entropy 1.3 *** *** (11.9 bits) 1.0 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATGAGTCA consensus G T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10156237-10156357 5 1.83e-05 CTCT ATGAGTCA TATCTTATCT chr3R:16280120-16280240 14 1.83e-05 GCACTGCTGT ATGAGTCA CTCCCTCACT chr3L:7435319-7435439 83 4.74e-05 ATTAGTCACA GTGAGTCA TTCGCTCGGT chr3R:8119938-8120058 52 4.74e-05 ggcgttgatg atgACTCA TATCAGCAAA chr3R:8113430-8113550 68 4.74e-05 TGGCTCGATG ATGACTCA TCGCCATTAC chr2L:2365146-2365266 107 4.74e-05 CCATCTACTA GTGAGTCA CATTTA chr3L:16613111-16613231 40 4.74e-05 TTTTTTGCAC ATGACTCA GGGGGGAGCT chr2R:16270692-16270812 113 4.74e-05 CTTTGCGTGC ATGACTCA chr3R:16453052-16453172 59 4.74e-05 tGAACCAGCC GTGAGTCA TAAACACATG chr3R:23190445-23190565 53 4.74e-05 TCGAATAGCG ATGACTCA GCAGTTTAAA chr3R:23993598-23993718 63 5.77e-05 ATTGCTCAGA GTGACTCA CCCGATTTGT chr3L:7529381-7529501 36 9.41e-05 CGGTCGAGTG ATTAGTCA TAGTGGATCC chr3L:12773512-12773632 10 9.41e-05 TAAGAGTAA ATTAGTCA TATAAACAAA chrX:3675697-3675817 66 9.41e-05 GGGGGGTGGT ATTAGTCA CTAGTGACAG chr3R:5672983-5673103 21 1.52e-04 AAATGGCCCA GTTAGTCA TTAACATTTG chr2R:8237685-8237805 56 1.52e-04 TATGTGTCGC ATTACTCA TGCGCTCTCA chr3L:17947284-17947404 37 1.52e-04 AAGAAAGCAA ATTACTCA TACGCCACCG chr2L:19548257-19548377 80 1.52e-04 ATATATTGGC ATTACTCA TCGCTACATT chr3L:12850093-12850213 80 2.07e-04 ACTTTTCACT ATGAATCA TCAGCTGTCG chr3L:18683968-18684088 51 2.07e-04 GAGGATTTGT ATGAATCA CTTCTGTTTG chrX:8560167-8560287 47 2.25e-04 TGAGTAACTG GTGAATCA GTGATGACGA chr2R:23072432-23072552 62 2.52e-04 TGTATAAATG GTGCGTCA TACCTGGCGA chr2L:7828302-7828422 29 2.94e-04 GCGCGAGAGC ATGATTCA TGTCGTGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10156237-10156357 1.8e-05 4_[+4]_108 chr3R:16280120-16280240 1.8e-05 13_[+4]_99 chr3L:7435319-7435439 4.7e-05 82_[+4]_30 chr3R:8119938-8120058 4.7e-05 51_[+4]_61 chr3R:8113430-8113550 4.7e-05 67_[+4]_45 chr2L:2365146-2365266 4.7e-05 106_[+4]_6 chr3L:16613111-16613231 4.7e-05 39_[+4]_73 chr2R:16270692-16270812 4.7e-05 112_[+4] chr3R:16453052-16453172 4.7e-05 58_[+4]_54 chr3R:23190445-23190565 4.7e-05 52_[+4]_60 chr3R:23993598-23993718 5.8e-05 62_[+4]_50 chr3L:7529381-7529501 9.4e-05 35_[+4]_77 chr3L:12773512-12773632 9.4e-05 9_[+4]_103 chrX:3675697-3675817 9.4e-05 65_[+4]_47 chr3R:5672983-5673103 0.00015 20_[+4]_92 chr2R:8237685-8237805 0.00015 55_[+4]_57 chr3L:17947284-17947404 0.00015 36_[+4]_76 chr2L:19548257-19548377 0.00015 79_[+4]_33 chr3L:12850093-12850213 0.00021 79_[+4]_33 chr3L:18683968-18684088 0.00021 50_[+4]_62 chrX:8560167-8560287 0.00023 46_[+4]_66 chr2R:23072432-23072552 0.00025 61_[+4]_51 chr2L:7828302-7828422 0.00029 28_[+4]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGASTCA width=8 seqs=23 chr2R:10156237-10156357 ( 5) ATGAGTCA 1 chr3R:16280120-16280240 ( 14) ATGAGTCA 1 chr3L:7435319-7435439 ( 83) GTGAGTCA 1 chr3R:8119938-8120058 ( 52) ATGACTCA 1 chr3R:8113430-8113550 ( 68) ATGACTCA 1 chr2L:2365146-2365266 ( 107) GTGAGTCA 1 chr3L:16613111-16613231 ( 40) ATGACTCA 1 chr2R:16270692-16270812 ( 113) ATGACTCA 1 chr3R:16453052-16453172 ( 59) GTGAGTCA 1 chr3R:23190445-23190565 ( 53) ATGACTCA 1 chr3R:23993598-23993718 ( 63) GTGACTCA 1 chr3L:7529381-7529501 ( 36) ATTAGTCA 1 chr3L:12773512-12773632 ( 10) ATTAGTCA 1 chrX:3675697-3675817 ( 66) ATTAGTCA 1 chr3R:5672983-5673103 ( 21) GTTAGTCA 1 chr2R:8237685-8237805 ( 56) ATTACTCA 1 chr3L:17947284-17947404 ( 37) ATTACTCA 1 chr2L:19548257-19548377 ( 80) ATTACTCA 1 chr3L:12850093-12850213 ( 80) ATGAATCA 1 chr3L:18683968-18684088 ( 51) ATGAATCA 1 chrX:8560167-8560287 ( 47) GTGAATCA 1 chr2R:23072432-23072552 ( 62) GTGCGTCA 1 chr2L:7828302-7828422 ( 29) ATGATTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 11187 bayes= 9.32627 E= 7.6e+002 113 -1117 86 -1117 -1117 -1117 -1117 158 -1117 -1117 205 -14 158 -204 -1117 -1117 -129 113 137 -294 -1117 -1117 -1117 158 -1117 248 -1117 -1117 165 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 7.6e+002 0.695652 0.000000 0.304348 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.695652 0.304348 0.956522 0.043478 0.000000 0.000000 0.130435 0.391304 0.434783 0.043478 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGASTCA MEME-4 regular expression -------------------------------------------------------------------------------- [AG]T[GT]A[GC]TCA -------------------------------------------------------------------------------- Time 6.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CDCSCACA MEME-5 width = 8 sites = 18 llr = 155 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :4:2:8:6 pos.-specific C a1a3a:a2 probability G :3:4:2:: matrix T :2:1:::2 bits 2.6 * * * * 2.3 * * * * 2.1 * * * * 1.8 * * * * Relative 1.5 * * * * Entropy 1.3 * * * * (12.4 bits) 1.0 * * *** 0.8 * * *** 0.5 * ****** 0.3 ******** 0.0 -------- Multilevel CACGCACA consensus G C C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16613111-16613231 80 7.74e-06 AGAAAACCAC CGCCCACA GTGGAAAAAC chr2L:6083080-6083200 9 1.33e-05 cacacata cacgcaca tcggaccaca chr3R:16453052-16453172 83 1.33e-05 CATGCACAAG CACGCACA CTCGCTCGTT chr3L:18800553-18800673 34 1.33e-05 TATTTCAGAA CACGCACA CACACGCGAC chr3L:15554067-15554187 39 1.51e-05 AATAACTTAT CGCCCACC CCTAAGGCCT chr2L:2365146-2365266 91 2.42e-05 TTAGCAAATA CACGCACC ATCTACTAGT chr2L:7828302-7828422 52 3.16e-05 TGCCCTCTTG CTCGCACA GTAGCGGCGG chr2R:9303311-9303431 73 3.16e-05 TAAAGCACTG CTCGCACA ATGCAGCCAT chr3R:5672983-5673103 54 4.06e-05 CCTCCCTCAC CGCGCGCC TACCCTCAGA chr3L:7435319-7435439 6 5.31e-05 ACGCT CTCCCACA CAAAgagcga chr3L:18044783-18044903 50 6.20e-05 TTATTACGCT CGCCCACT TGTAATTCGC chr2L:5980257-5980377 4 1.03e-04 ACT CACCCACT GCCACTGCTT chr2R:19468156-19468276 53 1.03e-04 AAAAGCGTGA CACACACA CGAGAGAGAG chr2L:3478106-3478226 51 1.31e-04 TCAAGACAGC CCCCCACC ATCGCTACAC chr3L:16800327-16800447 2 1.35e-04 G CGCACGCA ATCAGAGGCC chr3R:9351710-9351830 68 1.62e-04 ACAATGACGT CACGCGCT TAAGTGATGT chr3R:14749165-14749285 107 1.62e-04 TTTTACTCAG CGCTCACA TGACTC chr3L:19900664-19900784 51 1.62e-04 GAGTGTGTGA CTCACACA ACACAACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16613111-16613231 7.7e-06 79_[+5]_33 chr2L:6083080-6083200 1.3e-05 8_[+5]_104 chr3R:16453052-16453172 1.3e-05 82_[+5]_30 chr3L:18800553-18800673 1.3e-05 33_[+5]_79 chr3L:15554067-15554187 1.5e-05 38_[+5]_74 chr2L:2365146-2365266 2.4e-05 90_[+5]_22 chr2L:7828302-7828422 3.2e-05 51_[+5]_61 chr2R:9303311-9303431 3.2e-05 72_[+5]_40 chr3R:5672983-5673103 4.1e-05 53_[+5]_59 chr3L:7435319-7435439 5.3e-05 5_[+5]_107 chr3L:18044783-18044903 6.2e-05 49_[+5]_63 chr2L:5980257-5980377 0.0001 3_[+5]_109 chr2R:19468156-19468276 0.0001 52_[+5]_60 chr2L:3478106-3478226 0.00013 50_[+5]_62 chr3L:16800327-16800447 0.00014 1_[+5]_111 chr3R:9351710-9351830 0.00016 67_[+5]_45 chr3R:14749165-14749285 0.00016 106_[+5]_6 chr3L:19900664-19900784 0.00016 50_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CDCSCACA width=8 seqs=18 chr3L:16613111-16613231 ( 80) CGCCCACA 1 chr2L:6083080-6083200 ( 9) CACGCACA 1 chr3R:16453052-16453172 ( 83) CACGCACA 1 chr3L:18800553-18800673 ( 34) CACGCACA 1 chr3L:15554067-15554187 ( 39) CGCCCACC 1 chr2L:2365146-2365266 ( 91) CACGCACC 1 chr2L:7828302-7828422 ( 52) CTCGCACA 1 chr2R:9303311-9303431 ( 73) CTCGCACA 1 chr3R:5672983-5673103 ( 54) CGCGCGCC 1 chr3L:7435319-7435439 ( 6) CTCCCACA 1 chr3L:18044783-18044903 ( 50) CGCCCACT 1 chr2L:5980257-5980377 ( 4) CACCCACT 1 chr2R:19468156-19468276 ( 53) CACACACA 1 chr2L:3478106-3478226 ( 51) CCCCCACC 1 chr3L:16800327-16800447 ( 2) CGCACGCA 1 chr3R:9351710-9351830 ( 68) CACGCGCT 1 chr3R:14749165-14749285 ( 107) CGCTCACA 1 chr3L:19900664-19900784 ( 51) CTCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 11187 bayes= 10.1263 E= 2.6e+003 -1081 248 -1081 -1081 29 -169 99 -59 -1081 248 -1081 -1081 -93 89 141 -259 -1081 248 -1081 -1081 139 -1081 -1 -1081 -1081 248 -1081 -1081 94 31 -1081 -100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.6e+003 0.000000 1.000000 0.000000 0.000000 0.388889 0.055556 0.333333 0.222222 0.000000 1.000000 0.000000 0.000000 0.166667 0.333333 0.444444 0.055556 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.222222 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDCSCACA MEME-5 regular expression -------------------------------------------------------------------------------- C[AGT]C[GC]CAC[AC] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:17636-17756 1.00e+00 120 chrM:18546-18666 1.00e+00 120 chrM:17286-17406 1.00e+00 120 chrM:16098-16218 1.00e+00 120 chrM:6421-6541 9.99e-01 120 chrM:15151-15271 1.00e+00 120 chrM:19296-19416 1.00e+00 120 chrM:15350-15470 1.00e+00 120 chr2R:12952369-12952489 6.49e-01 120 chrX:3675697-3675817 1.51e-06 48_[+2(8.26e-06)]_[+2(4.85e-05)]_1_\ [+4(9.41e-05)]_47 chr2L:16315923-16316043 7.86e-02 120 chr2R:15571411-15571531 6.01e-02 39_[+1(5.25e-05)]_73 chr3R:16280120-16280240 3.44e-04 13_[+4(1.83e-05)]_99 chrM:821-941 1.00e+00 120 chr2L:480716-480836 5.15e-01 120 chr3L:18044783-18044903 2.76e-01 49_[+5(6.20e-05)]_63 chr2L:16269872-16269992 1.35e-05 95_[+2(8.26e-06)]_17 chr3R:16652258-16652378 3.54e-03 37_[+2(9.32e-05)]_18_[+4(9.41e-05)]_\ 49 chrM:4237-4357 9.87e-01 120 chr3L:225241-225361 5.10e-01 120 chr3L:19900664-19900784 1.76e-05 24_[+3(2.42e-05)]_14_[+4(5.77e-05)]_\ 66 chr2R:10156237-10156357 2.81e-04 4_[+4(1.83e-05)]_58_[+2(5.44e-05)]_\ 42 chr3L:18683968-18684088 1.04e-02 120 chr3R:23190445-23190565 4.70e-02 52_[+4(4.74e-05)]_60 chr3R:14749165-14749285 2.75e-01 120 chrM:6732-6852 8.95e-01 120 chr2L:19548257-19548377 4.43e-02 120 chr3L:18800553-18800673 1.19e-02 33_[+5(1.33e-05)]_79 chrM:13968-14088 9.97e-01 120 chr2R:11206690-11206810 3.55e-01 120 chr3R:16453052-16453172 1.19e-04 49_[+3(9.16e-05)]_1_[+4(4.74e-05)]_\ 16_[+5(1.33e-05)]_30 chr3R:23993598-23993718 2.20e-03 62_[+4(5.77e-05)]_50 chrM:9914-10034 7.40e-01 120 chr2R:16270692-16270812 1.11e-01 112_[+4(4.74e-05)] chr3L:17947284-17947404 4.69e-03 120 chrM:6933-7053 9.04e-01 120 chr3L:16613111-16613231 6.26e-08 4_[+2(7.05e-05)]_27_[+4(4.74e-05)]_\ 4_[+1(1.11e-05)]_20_[+5(7.74e-06)]_33 chrM:1525-1645 4.82e-01 120 chrX:8560167-8560287 1.22e-03 2_[+3(4.83e-05)]_110 chr3L:12773512-12773632 6.54e-04 9_[+4(9.41e-05)]_40_[+1(6.54e-05)]_\ 55 chrX:22433030-22433150 1.00e+00 120 chr3L:7529381-7529501 4.05e-04 35_[+4(9.41e-05)]_25_[+2(8.94e-05)]_\ 22_[+2(1.43e-05)]_14 chrM:6204-6324 9.89e-01 120 chr2R:7779763-7779883 8.54e-01 120 chrM:2087-2207 5.45e-02 120 chr2R:10252338-10252458 2.46e-01 74_[+1(6.54e-05)]_38 chrM:213-333 5.62e-01 120 chrM:426-546 9.79e-01 120 chr2R:9303311-9303431 6.83e-03 72_[+5(3.16e-05)]_40 chrM:13268-13388 1.52e-01 120 chr2L:2365146-2365266 1.55e-04 90_[+5(2.42e-05)]_8_[+4(4.74e-05)]_\ 6 chrM:11339-11459 9.14e-01 120 chrX:2742191-2742311 8.20e-05 54_[+3(3.53e-05)]_39_[+2(2.92e-05)]_\ 11 chr3L:4413936-4414056 4.06e-06 63_[+1(1.11e-05)]_3_[+2(1.43e-05)]_\ 28_[+1(5.25e-05)]_2 chr2R:9143892-9144012 4.48e-02 81_[+1(1.64e-05)]_31 chrM:5478-5598 9.91e-01 120 chr3R:9351710-9351830 4.72e-03 120 chrM:12156-12276 3.17e-01 120 chr2L:3158804-3158924 4.59e-03 46_[+3(5.55e-05)]_66 chr3R:9954770-9954890 8.06e-01 120 chrM:8491-8611 9.99e-01 120 chrM:10663-10783 8.18e-02 120 chr2R:9544191-9544311 6.09e-02 120 chrM:2697-2817 4.79e-01 120 chrM:2898-3018 5.96e-02 120 chrM:12358-12478 1.00e+00 120 chrM:7382-7502 1.92e-01 120 chrM:3543-3663 5.15e-02 1_[+1(5.25e-05)]_111 chr3L:10868240-10868360 5.29e-02 89_[+2(8.94e-05)]_1_[+2(8.94e-05)]_\ 14 chr3L:13964996-13965116 7.21e-02 101_[+1(5.25e-05)]_11 chr3L:9349513-9349633 7.07e-03 80_[+2(1.43e-05)]_32 chrM:1727-1847 5.63e-02 100_[+1(1.64e-05)]_12 chr2R:23072432-23072552 2.66e-04 87_[+2(5.44e-05)]_25 chr2R:16103243-16103363 1.71e-05 81_[+3(3.83e-06)]_2_[+3(6.61e-05)]_\ 12_[+3(1.42e-05)]_1 chrM:5277-5397 7.47e-01 120 chr3R:26947430-26947550 6.07e-01 120 chrM:8715-8835 8.91e-01 120 chr3L:12850093-12850213 5.14e-03 120 chr2R:8237685-8237805 3.82e-05 11_[+1(6.54e-05)]_5_[+2(1.43e-05)]_\ 88 chrM:10866-10986 5.04e-01 120 chr3L:16800327-16800447 1.14e-01 120 chr2L:5305353-5305473 5.54e-05 11_[+2(3.72e-05)]_4_[+2(8.94e-05)]_\ 89 chr3R:29869225-29869345 2.43e-02 120 chr3R:20783836-20783956 2.08e-02 75_[+2(3.72e-05)]_37 chr2L:6083080-6083200 1.61e-03 8_[+5(1.33e-05)]_104 chr2L:3478106-3478226 3.68e-03 120 chr3R:18917011-18917131 1.89e-01 120 chr3R:8113430-8113550 4.09e-03 67_[+4(4.74e-05)]_45 chr3R:8119938-8120058 1.53e-03 51_[+4(4.74e-05)]_61 chr2R:19468156-19468276 3.66e-07 23_[+2(1.26e-06)]_38_[+3(2.56e-05)]_\ 43 chr2L:7828302-7828422 9.11e-06 20_[+3(1.96e-05)]_23_[+5(3.16e-05)]_\ 61 chr2L:9175309-9175429 2.29e-02 97_[+3(3.83e-06)]_15 chr3L:7435319-7435439 1.25e-07 5_[+5(5.31e-05)]_4_[+3(1.42e-05)]_\ 12_[+3(1.96e-05)]_27_[+4(9.41e-05)]_2_[+4(4.74e-05)]_30 chr2L:5980257-5980377 1.03e-05 23_[+2(1.92e-05)]_8_[+3(1.42e-05)]_\ 41_[+2(4.85e-05)]_24 chr3R:5672983-5673103 2.79e-04 53_[+5(4.06e-05)]_42_[+3(3.53e-05)]_\ 9 chr2R:10096954-10097074 1.57e-01 120 chr3L:20471284-20471404 1.49e-01 120 chr3L:10332160-10332280 2.56e-06 12_[+2(6.56e-05)]_42_[+3(1.55e-06)]_\ 12_[+1(1.11e-05)]_30 chr3L:15554067-15554187 1.66e-02 38_[+5(1.51e-05)]_74 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************