******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/jumu.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:20735557-20735677 1.0000 120 chrX:6091176-6091296 1.0000 120 chr3R:29806741-29806861 1.0000 120 chr3R:7920329-7920449 1.0000 120 chr2R:13450473-13450593 1.0000 120 chr3L:8853058-8853178 1.0000 120 chrX:1239833-1239953 1.0000 120 chr3R:29699346-29699466 1.0000 120 chr3R:31580666-31580786 1.0000 120 chr2R:24132821-24132941 1.0000 120 chr3L:20276757-20276877 1.0000 120 chr3L:9614072-9614192 1.0000 120 chr3L:764467-764587 1.0000 120 chrX:16650570-16650690 1.0000 120 chr3L:3811106-3811226 1.0000 120 chrX:16105829-16105949 1.0000 120 chr3L:721090-721210 1.0000 120 chr3R:8563975-8564095 1.0000 120 chrX:18837173-18837293 1.0000 120 chr2R:12870729-12870849 1.0000 120 chr3R:13469321-13469441 1.0000 120 chr2R:20112104-20112224 1.0000 120 chr2R:18698804-18698924 1.0000 120 chrX:17229942-17230062 1.0000 120 chrX:6615574-6615694 1.0000 120 chr3R:11735462-11735582 1.0000 120 chrX:1119341-1119461 1.0000 120 chr2L:5781272-5781392 1.0000 120 chr3R:26867617-26867737 1.0000 120 chr3R:12426059-12426179 1.0000 120 chr2L:3435183-3435303 1.0000 120 chr3L:19190875-19190995 1.0000 120 chr3L:4353893-4354013 1.0000 120 chr3L:22207252-22207372 1.0000 120 chr3L:9461740-9461860 1.0000 120 chr2L:3569921-3570041 1.0000 120 chr3R:29725682-29725802 1.0000 120 chrX:8417097-8417217 1.0000 120 chr2L:19452695-19452815 1.0000 120 chrX:17465605-17465725 1.0000 120 chr3R:27440685-27440805 1.0000 120 chr3R:22447379-22447499 1.0000 120 chr2R:18277143-18277263 1.0000 120 chr2R:9941463-9941583 1.0000 120 chr3L:4627208-4627328 1.0000 120 chrX:2036841-2036961 1.0000 120 chr2R:12229723-12229843 1.0000 120 chr3R:15644897-15645017 1.0000 120 chr2R:22197207-22197327 1.0000 120 chr2L:871502-871622 1.0000 120 chr3R:24805225-24805345 1.0000 120 chr3R:15278038-15278158 1.0000 120 chr3R:14575919-14576039 1.0000 120 chr2L:8437309-8437429 1.0000 120 chr2L:14619779-14619899 1.0000 120 chr2L:22120978-22121098 1.0000 120 chrX:13088157-13088277 1.0000 120 chrX:1477013-1477133 1.0000 120 chr3R:11581481-11581601 1.0000 120 chrX:10184845-10184965 1.0000 120 chrX:4540770-4540890 1.0000 120 chr2R:21851676-21851796 1.0000 120 chr2L:21619235-21619355 1.0000 120 chrX:5516168-5516288 1.0000 120 chr3R:29089749-29089869 1.0000 120 chr3L:6086189-6086309 1.0000 120 chrX:5312133-5312253 1.0000 120 chr3L:6978301-6978421 1.0000 120 chrX:17578332-17578452 1.0000 120 chr2R:13507002-13507122 1.0000 120 chr3R:18663545-18663665 1.0000 120 chr2L:10488735-10488855 1.0000 120 chrX:11846524-11846644 1.0000 120 chrX:11136299-11136419 1.0000 120 chrX:2136508-2136628 1.0000 120 chrX:18239448-18239568 1.0000 120 chr2L:18688837-18688957 1.0000 120 chr2L:10004655-10004775 1.0000 120 chrX:9319219-9319339 1.0000 120 chrX:19748761-19748881 1.0000 120 chr2R:10013312-10013432 1.0000 120 chrX:5889126-5889246 1.0000 120 chrX:3714175-3714295 1.0000 120 chr2L:9779278-9779398 1.0000 120 chrX:19521885-19522005 1.0000 120 chrX:1380439-1380559 1.0000 120 chrX:7703110-7703230 1.0000 120 chrX:771844-771964 1.0000 120 chrX:4498419-4498539 1.0000 120 chrX:4113739-4113859 1.0000 120 chr2L:14123754-14123874 1.0000 120 chr3L:9898556-9898676 1.0000 120 chr2R:10899095-10899215 1.0000 120 chr3L:15563547-15563667 1.0000 120 chr2R:16344427-16344547 1.0000 120 chrX:14580467-14580587 1.0000 120 chrX:5086232-5086352 1.0000 120 chr3L:199227-199347 1.0000 120 chrX:3862450-3862570 1.0000 120 chrX:8677531-8677651 1.0000 120 chr2R:18846642-18846762 1.0000 120 chrX:1349361-1349481 1.0000 120 chr2L:7154990-7155110 1.0000 120 chr3R:9938638-9938758 1.0000 120 chr3L:94158-94278 1.0000 120 chr2R:7939071-7939191 1.0000 120 chrX:12221713-12221833 1.0000 120 chrX:19697674-19697794 1.0000 120 chr2R:12636564-12636684 1.0000 120 chrX:11137660-11137780 1.0000 120 chr3R:8744390-8744510 1.0000 120 chr2L:16680058-16680178 1.0000 120 chr2L:18930841-18930961 1.0000 120 chrX:656232-656352 1.0000 120 chr3R:29806975-29807095 1.0000 120 chr2R:8928087-8928207 1.0000 120 chr2L:901444-901564 1.0000 120 chr3L:21251426-21251546 1.0000 120 chr3R:8784943-8785063 1.0000 120 chr2L:19059041-19059161 1.0000 120 chr2R:9116066-9116186 1.0000 120 chrX:16103574-16103694 1.0000 120 chr3R:21188252-21188372 1.0000 120 chr3R:6369089-6369209 1.0000 120 chr2R:19874683-19874803 1.0000 120 chr3R:5282712-5282832 1.0000 120 chrX:19666010-19666130 1.0000 120 chr3L:13922415-13922535 1.0000 120 chr3L:16760457-16760577 1.0000 120 chr3L:13964707-13964827 1.0000 120 chrX:10825434-10825554 1.0000 120 chr2R:22066853-22066973 1.0000 120 chr2R:6015670-6015790 1.0000 120 chrX:21117065-21117185 1.0000 120 chr2R:5967720-5967840 1.0000 120 chr3R:16948804-16948924 1.0000 120 chr3R:6908221-6908341 1.0000 120 chr2R:7590047-7590167 1.0000 120 chr2L:1158210-1158330 1.0000 120 chr2L:8610995-8611115 1.0000 120 chrX:18899857-18899977 1.0000 120 chr3R:8171624-8171744 1.0000 120 chr3R:26235213-26235333 1.0000 120 chr2L:17583202-17583322 1.0000 120 chr4:359871-359991 1.0000 120 chr2L:11949990-11950110 1.0000 120 chrX:5666002-5666122 1.0000 120 chr2L:10298471-10298591 1.0000 120 chrX:15739023-15739143 1.0000 120 chr3L:14776115-14776235 1.0000 120 chrX:6663257-6663377 1.0000 120 chr2R:10066565-10066685 1.0000 120 chrX:13333067-13333187 1.0000 120 chr2L:9938213-9938333 1.0000 120 chrX:13789123-13789243 1.0000 120 chrX:16441418-16441538 1.0000 120 chr2R:7387245-7387365 1.0000 120 chr3R:11220085-11220205 1.0000 120 chr2L:12351073-12351193 1.0000 120 chrX:4366330-4366450 1.0000 120 chr2L:7412251-7412371 1.0000 120 chr2L:21344373-21344493 1.0000 120 chr3R:23445379-23445499 1.0000 120 chr3L:19000589-19000709 1.0000 120 chrX:11854881-11855001 1.0000 120 chrX:5968235-5968355 1.0000 120 chr2L:838176-838296 1.0000 120 chrX:19683557-19683677 1.0000 120 chrX:4262808-4262928 1.0000 120 chr3R:27238977-27239097 1.0000 120 chrX:2720247-2720367 1.0000 120 chr2L:5542440-5542560 1.0000 120 chr3R:10024187-10024307 1.0000 120 chr2L:1715875-1715995 1.0000 120 chrX:8606280-8606400 1.0000 120 chr3L:12350434-12350554 1.0000 120 chr3L:21175611-21175731 1.0000 120 chr2L:11829407-11829527 1.0000 120 chr2R:17850770-17850890 1.0000 120 chr2L:14376967-14377087 1.0000 120 chr2R:23176750-23176870 1.0000 120 chrX:4116964-4117084 1.0000 120 chr2R:17590683-17590803 1.0000 120 chr2L:11809142-11809262 1.0000 120 chr3L:1216560-1216680 1.0000 120 chr3L:8440856-8440976 1.0000 120 chr3R:5076320-5076440 1.0000 120 chrX:11548869-11548989 1.0000 120 chrX:10326004-10326124 1.0000 120 chr2R:20582486-20582606 1.0000 120 chrX:17125221-17125341 1.0000 120 chr2L:5944730-5944850 1.0000 120 chr3R:4714070-4714190 1.0000 120 chr2R:19127946-19128066 1.0000 120 chr3L:6606055-6606175 1.0000 120 chr3L:13923460-13923580 1.0000 120 chrX:18863778-18863898 1.0000 120 chr2R:9989052-9989172 1.0000 120 chr2L:2752510-2752630 1.0000 120 chr2L:3598640-3598760 1.0000 120 chrX:8720319-8720439 1.0000 120 chr2R:24669289-24669409 1.0000 120 chr2R:20906676-20906796 1.0000 120 chr2R:9103202-9103322 1.0000 120 chr3L:15968025-15968145 1.0000 120 chr2R:9285079-9285199 1.0000 120 chr3R:17682522-17682642 1.0000 120 chr2R:23383432-23383552 1.0000 120 chr3L:19586123-19586243 1.0000 120 chr3R:30428032-30428152 1.0000 120 chr3L:15565901-15566021 1.0000 120 chr3L:6054926-6055046 1.0000 120 chr3L:292311-292431 1.0000 120 chr2R:17564730-17564850 1.0000 120 chrX:1859039-1859159 1.0000 120 chr3R:5758939-5759059 1.0000 120 chr3R:4319556-4319676 1.0000 120 chr2L:6649249-6649369 1.0000 120 chr3R:30052531-30052651 1.0000 120 chrX:15499012-15499132 1.0000 120 chr2R:24046759-24046879 1.0000 120 chrX:10067656-10067776 1.0000 120 chrX:13128071-13128191 1.0000 120 chrX:1392919-1393039 1.0000 120 chrX:21324139-21324259 1.0000 120 chr3L:1414132-1414252 1.0000 120 chr2L:3775977-3776097 1.0000 120 chrX:6375771-6375891 1.0000 120 chr2L:488381-488501 1.0000 120 chr3L:10845194-10845314 1.0000 120 chr2R:7525701-7525821 1.0000 120 chr2L:15060760-15060880 1.0000 120 chr3R:21580211-21580331 1.0000 120 chr2R:18433802-18433922 1.0000 120 chr2L:6339641-6339761 1.0000 120 chr3R:15263396-15263516 1.0000 120 chr2R:15835430-15835550 1.0000 120 chr2R:20601249-20601369 1.0000 120 chr2L:20881509-20881629 1.0000 120 chr3L:5813107-5813227 1.0000 120 chr3L:8751404-8751524 1.0000 120 chr3R:18366474-18366594 1.0000 120 chr2R:9388722-9388842 1.0000 120 chrX:1370177-1370297 1.0000 120 chr2L:9699232-9699352 1.0000 120 chr3L:10745769-10745889 1.0000 120 chr3L:772336-772456 1.0000 120 chrX:16968674-16968794 1.0000 120 chr3L:21484043-21484163 1.0000 120 chr2L:1150626-1150746 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_jumu/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/jumu.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.206 G 0.207 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.206 G 0.207 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGYTGCC MEME-1 width = 8 sites = 42 llr = 361 E-value = 1.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :11::::: pos.-specific C :6161:9a probability G 938::a1: matrix T 1::49::: bits 2.3 * 2.1 * * 1.8 *** 1.6 * *** Relative 1.4 * **** Entropy 1.1 ******** (12.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCTGCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1392919-1393039 37 1.16e-05 AAACGAATTG GCGTTGCC CAACACTGAC chrX:15499012-15499132 87 1.16e-05 CGTCGGTGCG GCGTTGCC ACCCCCTCGA chr2R:9989052-9989172 19 1.16e-05 CTTTCCTTTA GCGTTGCC ACTTCAATTT chrX:1380439-1380559 78 1.16e-05 CACTGGCTCG GCGTTGCC ACCTCGCGGG chr2R:13507002-13507122 89 1.16e-05 CCATGGCGCT GCGTTGCC AGACAGCTTG chr2L:871502-871622 27 1.16e-05 TAGGGAGTTA GCGTTGCC AGATAAATTT chr2R:9941463-9941583 32 1.16e-05 TCTCTTTGTT GCGTTGCC ATGGCATTTC chr3R:29806741-29806861 48 1.16e-05 GGAGAGTACG GCGTTGCC AGCCAAGACG chr2R:7525701-7525821 55 1.64e-05 AGTCCGGCTT GGGCTGCC AACCATAAGA chrX:3862450-3862570 7 1.64e-05 CCATTA GGGCTGCC ACTTGTCGAA chr3R:14575919-14576039 14 1.64e-05 GGCTCGGTGG GGGCTGCC ACCTGCCGAC chr2R:24046759-24046879 49 2.32e-05 GCACAGGTTA GGGTTGCC AGGCGCCGGC chr2R:7939071-7939191 73 2.32e-05 ATGCCTGGCA GGGTTGCC AGCTCACTGC chr3L:9461740-9461860 12 2.32e-05 CTGCCCGCCA GGGTTGCC AACCTCCTAA chrX:1477013-1477133 61 2.65e-05 GTGCTGTAAA GCGCCGCC ATTTAATTGC chr3R:18366474-18366594 110 3.12e-05 TTTGTTTCCA GCCCTGCC CAA chr3R:30428032-30428152 89 3.12e-05 TGCAATTATC GCCCTGCC TCTTCGAATA chr2R:8928087-8928207 102 3.12e-05 TTTTACATCA GCCCTGCC AGGGTCACTC chr3L:9898556-9898676 64 3.12e-05 TTCAGTTGCG GCCCTGCC AGGGAGTTGC chr2R:23176750-23176870 42 3.80e-05 TGCCTGCCGC TCGCTGCC TCAATTTCCA chr2R:12636564-12636684 86 3.80e-05 GCCGCCACCG TCGCTGCC GCAGCCAACT chr2L:10004655-10004775 41 3.80e-05 GCTGCCGGCT TCGCTGCC GCCGCTCTGC chrX:4116964-4117084 35 4.28e-05 GCGCAGCGTC GCGTCGCC TTTTCAAAGT chr3R:16948804-16948924 4 5.62e-05 AGA GCACTGCC CACTTTGCGA chrX:2136508-2136628 91 5.62e-05 TGTTTTAACT GCACTGCC TACGTCGCCA chr2R:13450473-13450593 48 5.62e-05 CGCACTGGCA GCACTGCC GTACAACGGG chr2L:5944730-5944850 53 5.95e-05 CCCCCTCGCA GGGCCGCC CAGAATGCGT chrX:5312133-5312253 105 5.95e-05 CACTCTCCAT GGGCCGCC ATTTTGTT chr3R:30052531-30052651 97 7.57e-05 AGCACTGCTA GCGCTGGC TGGCTCTTGA chr2R:7590047-7590167 66 7.57e-05 ATGTGCGACA GAGCTGCC ACCCTGCCAA chr3R:7920329-7920449 58 7.57e-05 TAAACTATTT GGCCTGCC ACACGACTCG chr3R:29806975-29807095 53 8.55e-05 AGCACTAGTG TCGTTGCC GGACGGTTGC chr3L:6978301-6978421 109 8.55e-05 AGCCTACCAC TCGTTGCC TTAG chr3R:11581481-11581601 112 8.55e-05 AGTAGTCGCT TCGTTGCC A chr3R:6369089-6369209 108 1.12e-04 CGCCGTGCTG GCGCTGCG AAAGG chrX:2720247-2720367 94 1.35e-04 GCGTGAACAA GAGTTGCC AGACGATCAG chr2L:8437309-8437429 42 1.35e-04 TTGAGTGGGG GAGTTGCC ACATCGCTGG chrX:1239833-1239953 63 1.35e-04 ATGGGCTAAC GCGTTGGC GAGGCATATT chr3L:15565901-15566021 30 1.45e-04 ATTTTCAAAC GCCCCGCC AATAGCAAAT chr3L:6606055-6606175 95 1.45e-04 GAAAATAGCG GGACTGCC AGCTCTGTTG chr2R:17850770-17850890 51 1.50e-04 GCTGATGGCA GGGCTGGC AGCACTAGTG chr2R:9116066-9116186 16 2.02e-04 GGGCATTTTC GGGCTGCG TGAGACAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1392919-1393039 1.2e-05 36_[+1]_76 chrX:15499012-15499132 1.2e-05 86_[+1]_26 chr2R:9989052-9989172 1.2e-05 18_[+1]_94 chrX:1380439-1380559 1.2e-05 77_[+1]_35 chr2R:13507002-13507122 1.2e-05 88_[+1]_24 chr2L:871502-871622 1.2e-05 26_[+1]_86 chr2R:9941463-9941583 1.2e-05 31_[+1]_81 chr3R:29806741-29806861 1.2e-05 47_[+1]_65 chr2R:7525701-7525821 1.6e-05 54_[+1]_58 chrX:3862450-3862570 1.6e-05 6_[+1]_106 chr3R:14575919-14576039 1.6e-05 13_[+1]_99 chr2R:24046759-24046879 2.3e-05 48_[+1]_64 chr2R:7939071-7939191 2.3e-05 72_[+1]_40 chr3L:9461740-9461860 2.3e-05 11_[+1]_101 chrX:1477013-1477133 2.7e-05 60_[+1]_52 chr3R:18366474-18366594 3.1e-05 109_[+1]_3 chr3R:30428032-30428152 3.1e-05 88_[+1]_24 chr2R:8928087-8928207 3.1e-05 101_[+1]_11 chr3L:9898556-9898676 3.1e-05 63_[+1]_49 chr2R:23176750-23176870 3.8e-05 41_[+1]_71 chr2R:12636564-12636684 3.8e-05 85_[+1]_27 chr2L:10004655-10004775 3.8e-05 40_[+1]_72 chrX:4116964-4117084 4.3e-05 34_[+1]_78 chr3R:16948804-16948924 5.6e-05 3_[+1]_109 chrX:2136508-2136628 5.6e-05 90_[+1]_22 chr2R:13450473-13450593 5.6e-05 47_[+1]_65 chr2L:5944730-5944850 6e-05 52_[+1]_60 chrX:5312133-5312253 6e-05 104_[+1]_8 chr3R:30052531-30052651 7.6e-05 96_[+1]_16 chr2R:7590047-7590167 7.6e-05 65_[+1]_47 chr3R:7920329-7920449 7.6e-05 57_[+1]_55 chr3R:29806975-29807095 8.6e-05 52_[+1]_60 chr3L:6978301-6978421 8.6e-05 108_[+1]_4 chr3R:11581481-11581601 8.6e-05 111_[+1]_1 chr3R:6369089-6369209 0.00011 107_[+1]_5 chrX:2720247-2720367 0.00013 93_[+1]_19 chr2L:8437309-8437429 0.00013 41_[+1]_71 chrX:1239833-1239953 0.00013 62_[+1]_50 chr3L:15565901-15566021 0.00014 29_[+1]_83 chr3L:6606055-6606175 0.00014 94_[+1]_18 chr2R:17850770-17850890 0.00015 50_[+1]_62 chr2R:9116066-9116186 0.0002 15_[+1]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGYTGCC width=8 seqs=42 chrX:1392919-1393039 ( 37) GCGTTGCC 1 chrX:15499012-15499132 ( 87) GCGTTGCC 1 chr2R:9989052-9989172 ( 19) GCGTTGCC 1 chrX:1380439-1380559 ( 78) GCGTTGCC 1 chr2R:13507002-13507122 ( 89) GCGTTGCC 1 chr2L:871502-871622 ( 27) GCGTTGCC 1 chr2R:9941463-9941583 ( 32) GCGTTGCC 1 chr3R:29806741-29806861 ( 48) GCGTTGCC 1 chr2R:7525701-7525821 ( 55) GGGCTGCC 1 chrX:3862450-3862570 ( 7) GGGCTGCC 1 chr3R:14575919-14576039 ( 14) GGGCTGCC 1 chr2R:24046759-24046879 ( 49) GGGTTGCC 1 chr2R:7939071-7939191 ( 73) GGGTTGCC 1 chr3L:9461740-9461860 ( 12) GGGTTGCC 1 chrX:1477013-1477133 ( 61) GCGCCGCC 1 chr3R:18366474-18366594 ( 110) GCCCTGCC 1 chr3R:30428032-30428152 ( 89) GCCCTGCC 1 chr2R:8928087-8928207 ( 102) GCCCTGCC 1 chr3L:9898556-9898676 ( 64) GCCCTGCC 1 chr2R:23176750-23176870 ( 42) TCGCTGCC 1 chr2R:12636564-12636684 ( 86) TCGCTGCC 1 chr2L:10004655-10004775 ( 41) TCGCTGCC 1 chrX:4116964-4117084 ( 35) GCGTCGCC 1 chr3R:16948804-16948924 ( 4) GCACTGCC 1 chrX:2136508-2136628 ( 91) GCACTGCC 1 chr2R:13450473-13450593 ( 48) GCACTGCC 1 chr2L:5944730-5944850 ( 53) GGGCCGCC 1 chrX:5312133-5312253 ( 105) GGGCCGCC 1 chr3R:30052531-30052651 ( 97) GCGCTGGC 1 chr2R:7590047-7590167 ( 66) GAGCTGCC 1 chr3R:7920329-7920449 ( 58) GGCCTGCC 1 chr3R:29806975-29807095 ( 53) TCGTTGCC 1 chr3L:6978301-6978421 ( 109) TCGTTGCC 1 chr3R:11581481-11581601 ( 112) TCGTTGCC 1 chr3R:6369089-6369209 ( 108) GCGCTGCG 1 chrX:2720247-2720367 ( 94) GAGTTGCC 1 chr2L:8437309-8437429 ( 42) GAGTTGCC 1 chrX:1239833-1239953 ( 63) GCGTTGGC 1 chr3L:15565901-15566021 ( 30) GCCCCGCC 1 chr3L:6606055-6606175 ( 95) GGACTGCC 1 chr2R:17850770-17850890 ( 51) GGGCTGGC 1 chr2R:9116066-9116186 ( 16) GGGCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 1.8e-006 -1204 -1204 205 -106 -202 164 47 -1204 -161 -53 188 -1204 -1204 147 -1204 53 -1204 -79 -1204 157 -1204 -1204 227 -1204 -1204 217 -153 -1204 -1204 221 -212 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.8e-006 0.000000 0.000000 0.857143 0.142857 0.071429 0.642857 0.285714 0.000000 0.095238 0.142857 0.761905 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.119048 0.000000 0.880952 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.952381 0.047619 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYTGCC MEME-1 regular expression -------------------------------------------------------------------------------- G[CG]G[CT]TGCC -------------------------------------------------------------------------------- Time 7.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-2 width = 8 sites = 31 llr = 278 E-value = 7.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1a:::a:7 pos.-specific C 1::a:::: probability G 1:::a::2 matrix T 7:a:::a1 bits 2.3 ** 2.1 ** 1.8 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (12.9 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16968674-16968794 107 2.72e-05 CATCAATCGC TATCGATA AGAAAT chr3L:5813107-5813227 34 2.72e-05 GTCTGCAATA TATCGATA AATATCGGTG chr3R:15263396-15263516 64 2.72e-05 CGACAATGCC TATCGATA GTGCTCTAAT chr3R:4319556-4319676 64 2.72e-05 GAGCAGCAGG TATCGATA ATCGCAACAA chr3R:4714070-4714190 113 2.72e-05 GAAAAGGGCC TATCGATA chrX:11854881-11855001 82 2.72e-05 TTAAGCAATG TATCGATA TAGCCCACAT chrX:16441418-16441538 87 2.72e-05 CCCATTCAAC TATCGATA GTCAGACCGC chr4:359871-359991 56 2.72e-05 GCAATCTATG TATCGATA TTTTTCTTCT chr2R:12636564-12636684 47 2.72e-05 CCATCAAAAC TATCGATA GTTCGTATTC chr2L:9779278-9779398 2 2.72e-05 c tatcgata ttccagaaaa chr3R:11581481-11581601 75 2.72e-05 CTCTACAAAG TATCGATA ACTTCAGCGA chrX:1477013-1477133 24 2.72e-05 CGCGCAGAGC TATCGATA AGTATCGCGA chr3R:7920329-7920449 99 2.72e-05 CTTTCTAAAA TATCGATA GTTTGTGGCA chr3R:20735557-20735677 5 2.72e-05 TTCT TATCGATA TGTGGCGCTG chr2R:10066565-10066685 28 4.67e-05 TTTTTTGGGC TATCGATG TTTTTATTGG chr2R:5967720-5967840 76 4.67e-05 TGTCGATAGT TATCGATG TTGTAAGCTG chrX:4540770-4540890 86 4.67e-05 CGCGTGCACC TATCGATG CCGAATCTAT chr2R:18277143-18277263 36 4.67e-05 CAGTATTACC TATCGATG ATTCTGTTTT chr3R:27440685-27440805 23 4.67e-05 GTACGCTATC TATCGATG GGAATATTGA chrX:8606280-8606400 74 8.46e-05 GCGCTCGATA GATCGATA TAATGTGCAT chr3L:14776115-14776235 72 8.46e-05 CATTCATTGG CATCGATA CTTTTTAGAA chr2R:9116066-9116186 66 8.46e-05 CCGCAGTGTC GATCGATA GTGTCAACTC chr3R:8784943-8785063 101 8.46e-05 GCCCCCATAT CATCGATA TACCTTTATA chrX:12221713-12221833 109 8.46e-05 AGTGGGTGGA GATCGATA ATTG chrX:14580467-14580587 84 8.46e-05 CTTGCTGGCC CATCGATA AGAAGCGGTT chr2L:1150626-1150746 57 1.39e-04 GATGCGAACC AATCGATA TTTGCAGTAG chr2R:23383432-23383552 51 1.39e-04 TTGCGATTTT AATCGATA ACGCTTTATA chr2R:9989052-9989172 61 1.39e-04 CGCAGCGTGT AATCGATA TTTTCTAAGC chrX:18863778-18863898 12 1.39e-04 CGACAAAAAC TATCGATT GTCAAGAATG chr2L:5542440-5542560 96 1.39e-04 GCCGGAAAGT TATCGATT AGTCTCTGAA chr3R:15278038-15278158 83 1.39e-04 CCGATGCACT TATCGATT ATTTACAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16968674-16968794 2.7e-05 106_[+2]_6 chr3L:5813107-5813227 2.7e-05 33_[+2]_79 chr3R:15263396-15263516 2.7e-05 63_[+2]_49 chr3R:4319556-4319676 2.7e-05 63_[+2]_49 chr3R:4714070-4714190 2.7e-05 112_[+2] chrX:11854881-11855001 2.7e-05 81_[+2]_31 chrX:16441418-16441538 2.7e-05 86_[+2]_26 chr4:359871-359991 2.7e-05 55_[+2]_57 chr2R:12636564-12636684 2.7e-05 46_[+2]_66 chr2L:9779278-9779398 2.7e-05 1_[+2]_111 chr3R:11581481-11581601 2.7e-05 74_[+2]_38 chrX:1477013-1477133 2.7e-05 23_[+2]_89 chr3R:7920329-7920449 2.7e-05 98_[+2]_14 chr3R:20735557-20735677 2.7e-05 4_[+2]_108 chr2R:10066565-10066685 4.7e-05 27_[+2]_85 chr2R:5967720-5967840 4.7e-05 75_[+2]_37 chrX:4540770-4540890 4.7e-05 85_[+2]_27 chr2R:18277143-18277263 4.7e-05 35_[+2]_77 chr3R:27440685-27440805 4.7e-05 22_[+2]_90 chrX:8606280-8606400 8.5e-05 73_[+2]_39 chr3L:14776115-14776235 8.5e-05 71_[+2]_41 chr2R:9116066-9116186 8.5e-05 65_[+2]_47 chr3R:8784943-8785063 8.5e-05 100_[+2]_12 chrX:12221713-12221833 8.5e-05 108_[+2]_4 chrX:14580467-14580587 8.5e-05 83_[+2]_29 chr2L:1150626-1150746 0.00014 56_[+2]_56 chr2R:23383432-23383552 0.00014 50_[+2]_62 chr2R:9989052-9989172 0.00014 60_[+2]_52 chrX:18863778-18863898 0.00014 11_[+2]_101 chr2L:5542440-5542560 0.00014 95_[+2]_17 chr3R:15278038-15278158 0.00014 82_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=31 chrX:16968674-16968794 ( 107) TATCGATA 1 chr3L:5813107-5813227 ( 34) TATCGATA 1 chr3R:15263396-15263516 ( 64) TATCGATA 1 chr3R:4319556-4319676 ( 64) TATCGATA 1 chr3R:4714070-4714190 ( 113) TATCGATA 1 chrX:11854881-11855001 ( 82) TATCGATA 1 chrX:16441418-16441538 ( 87) TATCGATA 1 chr4:359871-359991 ( 56) TATCGATA 1 chr2R:12636564-12636684 ( 47) TATCGATA 1 chr2L:9779278-9779398 ( 2) TATCGATA 1 chr3R:11581481-11581601 ( 75) TATCGATA 1 chrX:1477013-1477133 ( 24) TATCGATA 1 chr3R:7920329-7920449 ( 99) TATCGATA 1 chr3R:20735557-20735677 ( 5) TATCGATA 1 chr2R:10066565-10066685 ( 28) TATCGATG 1 chr2R:5967720-5967840 ( 76) TATCGATG 1 chrX:4540770-4540890 ( 86) TATCGATG 1 chr2R:18277143-18277263 ( 36) TATCGATG 1 chr3R:27440685-27440805 ( 23) TATCGATG 1 chrX:8606280-8606400 ( 74) GATCGATA 1 chr3L:14776115-14776235 ( 72) CATCGATA 1 chr2R:9116066-9116186 ( 66) GATCGATA 1 chr3R:8784943-8785063 ( 101) CATCGATA 1 chrX:12221713-12221833 ( 109) GATCGATA 1 chrX:14580467-14580587 ( 84) CATCGATA 1 chr2L:1150626-1150746 ( 57) AATCGATA 1 chr2R:23383432-23383552 ( 51) AATCGATA 1 chr2R:9989052-9989172 ( 61) AATCGATA 1 chrX:18863778-18863898 ( 12) TATCGATT 1 chr2L:5542440-5542560 ( 96) TATCGATT 1 chr3R:15278038-15278158 ( 83) TATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 7.2e-002 -158 -109 -110 126 178 -1160 -1160 -1160 -1160 -1160 -1160 175 -1160 228 -1160 -1160 -1160 -1160 227 -1160 178 -1160 -1160 -1160 -1160 -1160 -1160 175 135 -1160 -36 -162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.2e-002 0.096774 0.096774 0.096774 0.709677 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.741935 0.000000 0.161290 0.096774 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 14.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-3 width = 8 sites = 8 llr = 92 E-value = 2.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::::::aa probability G a:a:a::: matrix T :a:a:::: bits 2.3 * * * ** 2.1 * * * ** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10845194-10845314 95 9.63e-06 TGCGCTGTTA GTGTGACC AGGTGTACAA chr3L:19586123-19586243 107 9.63e-06 AAGTAAAGCA GTGTGACC ATCTCT chr2R:9285079-9285199 1 9.63e-06 . GTGTGACC GCGCCAGAGT chrX:18863778-18863898 37 9.63e-06 ATGAATGTCA GTGTGACC GTCATTTGAA chr3L:19000589-19000709 3 9.63e-06 CA GTGTGACC GTCCAGTCTA chr2R:6015670-6015790 30 9.63e-06 TTGAAAAGTA GTGTGACC ATATACGCAT chr3R:31580666-31580786 5 9.63e-06 GCCA GTGTGACC GTTTGCGCAC chr3R:29806741-29806861 22 9.63e-06 CTCTGGGGCA GTGTGACC ATTTGTCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10845194-10845314 9.6e-06 94_[+3]_18 chr3L:19586123-19586243 9.6e-06 106_[+3]_6 chr2R:9285079-9285199 9.6e-06 [+3]_112 chrX:18863778-18863898 9.6e-06 36_[+3]_76 chr3L:19000589-19000709 9.6e-06 2_[+3]_110 chr2R:6015670-6015790 9.6e-06 29_[+3]_83 chr3R:31580666-31580786 9.6e-06 4_[+3]_108 chr3R:29806741-29806861 9.6e-06 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=8 chr3L:10845194-10845314 ( 95) GTGTGACC 1 chr3L:19586123-19586243 ( 107) GTGTGACC 1 chr2R:9285079-9285199 ( 1) GTGTGACC 1 chrX:18863778-18863898 ( 37) GTGTGACC 1 chr3L:19000589-19000709 ( 3) GTGTGACC 1 chr2R:6015670-6015790 ( 30) GTGTGACC 1 chr3R:31580666-31580786 ( 5) GTGTGACC 1 chr3R:29806741-29806861 ( 22) GTGTGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.7e+002 -965 -965 227 -965 -965 -965 -965 175 -965 -965 227 -965 -965 -965 -965 175 -965 -965 227 -965 178 -965 -965 -965 -965 228 -965 -965 -965 228 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.7e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 20.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCCCC MEME-4 width = 8 sites = 2 llr = 25 E-value = 3.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C aa:aaaaa probability G :::::::: matrix T :::::::: bits 2.3 ** ***** 2.1 ** ***** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5944730-5944850 40 4.57e-06 GTGCAATGGG CCACCCCC TCGCAGGGCC chrX:5312133-5312253 29 4.57e-06 AGTATGTTCC CCACCCCC CAACACACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5944730-5944850 4.6e-06 39_[+4]_73 chrX:5312133-5312253 4.6e-06 28_[+4]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCCCC width=8 seqs=2 chr2L:5944730-5944850 ( 40) CCACCCCC 1 chrX:5312133-5312253 ( 29) CCACCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.3e+004 -765 228 -765 -765 -765 228 -765 -765 178 -765 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -765 228 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCACCCCC -------------------------------------------------------------------------------- Time 26.60 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCCGGC MEME-5 width = 8 sites = 2 llr = 25 E-value = 6.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::aa::a probability G :aa::aa: matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (18.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCCGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20881509-20881629 88 3.31e-06 AAGGATTGAA CGGCCGGC CCTACAATGC chr3R:5282712-5282832 113 3.31e-06 ACCCCACCTG CGGCCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20881509-20881629 3.3e-06 87_[+5]_25 chr3R:5282712-5282832 3.3e-06 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCCGGC width=8 seqs=2 chr2L:20881509-20881629 ( 88) CGGCCGGC 1 chr3R:5282712-5282832 ( 113) CGGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.9e+004 -765 228 -765 -765 -765 -765 227 -765 -765 -765 227 -765 -765 228 -765 -765 -765 228 -765 -765 -765 -765 227 -765 -765 -765 227 -765 -765 228 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGC MEME-5 regular expression -------------------------------------------------------------------------------- CGGCCGGC -------------------------------------------------------------------------------- Time 32.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20735557-20735677 3.51e-02 4_[+2(2.72e-05)]_108 chrX:6091176-6091296 9.46e-02 120 chr3R:29806741-29806861 1.78e-03 21_[+3(9.63e-06)]_18_[+1(1.16e-05)]_\ 65 chr3R:7920329-7920449 1.99e-03 57_[+1(7.57e-05)]_33_[+2(2.72e-05)]_\ 14 chr2R:13450473-13450593 7.12e-02 47_[+1(5.62e-05)]_65 chr3L:8853058-8853178 7.33e-02 120 chrX:1239833-1239953 4.71e-01 120 chr3R:29699346-29699466 6.52e-01 120 chr3R:31580666-31580786 3.74e-02 4_[+3(9.63e-06)]_45_[+3(7.88e-05)]_\ 55 chr2R:24132821-24132941 8.73e-01 120 chr3L:20276757-20276877 9.73e-01 120 chr3L:9614072-9614192 8.49e-01 120 chr3L:764467-764587 9.96e-01 120 chrX:16650570-16650690 9.47e-01 120 chr3L:3811106-3811226 9.12e-01 120 chrX:16105829-16105949 8.32e-01 120 chr3L:721090-721210 7.87e-01 120 chr3R:8563975-8564095 7.14e-01 120 chrX:18837173-18837293 9.75e-01 120 chr2R:12870729-12870849 1.42e-02 120 chr3R:13469321-13469441 7.20e-01 120 chr2R:20112104-20112224 4.66e-02 120 chr2R:18698804-18698924 9.82e-01 120 chrX:17229942-17230062 9.99e-01 120 chrX:6615574-6615694 9.99e-01 120 chr3R:11735462-11735582 1.71e-01 120 chrX:1119341-1119461 5.02e-01 120 chr2L:5781272-5781392 9.75e-01 120 chr3R:26867617-26867737 2.60e-01 120 chr3R:12426059-12426179 5.24e-01 120 chr2L:3435183-3435303 8.80e-01 120 chr3L:19190875-19190995 4.11e-01 120 chr3L:4353893-4354013 8.95e-01 120 chr3L:22207252-22207372 9.83e-01 120 chr3L:9461740-9461860 3.56e-03 11_[+1(2.32e-05)]_101 chr2L:3569921-3570041 6.90e-01 120 chr3R:29725682-29725802 9.96e-01 120 chrX:8417097-8417217 9.64e-01 120 chr2L:19452695-19452815 6.23e-01 120 chrX:17465605-17465725 9.80e-01 120 chr3R:27440685-27440805 3.51e-01 22_[+2(4.67e-05)]_90 chr3R:22447379-22447499 7.77e-01 120 chr2R:18277143-18277263 1.04e-01 35_[+2(4.67e-05)]_77 chr2R:9941463-9941583 7.09e-03 31_[+1(1.16e-05)]_81 chr3L:4627208-4627328 1.00e+00 120 chrX:2036841-2036961 2.27e-01 22_[+3(7.88e-05)]_90 chr2R:12229723-12229843 8.51e-01 120 chr3R:15644897-15645017 9.79e-01 120 chr2R:22197207-22197327 3.14e-01 120 chr2L:871502-871622 9.78e-02 26_[+1(1.16e-05)]_86 chr3R:24805225-24805345 2.11e-01 120 chr3R:15278038-15278158 4.50e-02 29_[+3(7.88e-05)]_83 chr3R:14575919-14576039 1.94e-02 13_[+1(1.64e-05)]_99 chr2L:8437309-8437429 8.97e-02 120 chr2L:14619779-14619899 6.28e-01 120 chr2L:22120978-22121098 1.71e-01 120 chrX:13088157-13088277 9.70e-01 120 chrX:1477013-1477133 4.19e-03 23_[+2(2.72e-05)]_29_[+1(2.65e-05)]_\ 52 chr3R:11581481-11581601 1.41e-02 74_[+2(2.72e-05)]_29_[+1(8.55e-05)]_\ 1 chrX:10184845-10184965 4.48e-01 120 chrX:4540770-4540890 1.45e-01 85_[+2(4.67e-05)]_27 chr2R:21851676-21851796 1.00e+00 120 chr2L:21619235-21619355 2.44e-01 120 chrX:5516168-5516288 8.34e-01 120 chr3R:29089749-29089869 9.88e-01 120 chr3L:6086189-6086309 1.00e+00 120 chrX:5312133-5312253 8.82e-04 28_[+4(4.57e-06)]_68_[+1(5.95e-05)]_\ 8 chr3L:6978301-6978421 3.00e-01 108_[+1(8.55e-05)]_4 chrX:17578332-17578452 5.94e-01 120 chr2R:13507002-13507122 6.75e-02 88_[+1(1.16e-05)]_24 chr3R:18663545-18663665 8.28e-01 120 chr2L:10488735-10488855 7.93e-01 120 chrX:11846524-11846644 9.35e-01 120 chrX:11136299-11136419 1.20e-01 120 chrX:2136508-2136628 1.81e-01 90_[+1(5.62e-05)]_22 chrX:18239448-18239568 6.29e-01 120 chr2L:18688837-18688957 9.45e-01 120 chr2L:10004655-10004775 3.27e-03 40_[+1(3.80e-05)]_72 chrX:9319219-9319339 2.83e-01 120 chrX:19748761-19748881 7.90e-01 120 chr2R:10013312-10013432 9.95e-01 120 chrX:5889126-5889246 7.15e-01 120 chrX:3714175-3714295 1.81e-02 120 chr2L:9779278-9779398 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chr3R:17682522-17682642 3.11e-01 120 chr2R:23383432-23383552 1.17e-01 120 chr3L:19586123-19586243 1.15e-01 106_[+3(9.63e-06)]_6 chr3R:30428032-30428152 7.50e-03 88_[+1(3.12e-05)]_24 chr3L:15565901-15566021 1.28e-02 120 chr3L:6054926-6055046 1.00e+00 120 chr3L:292311-292431 7.55e-01 120 chr2R:17564730-17564850 8.62e-01 120 chrX:1859039-1859159 9.98e-01 120 chr3R:5758939-5759059 1.20e-01 19_[+3(7.88e-05)]_93 chr3R:4319556-4319676 2.08e-01 63_[+2(2.72e-05)]_49 chr2L:6649249-6649369 9.91e-01 120 chr3R:30052531-30052651 1.35e-01 96_[+1(7.57e-05)]_16 chrX:15499012-15499132 3.17e-04 92_[+4(4.57e-06)]_20 chr2R:24046759-24046879 3.84e-02 48_[+1(2.32e-05)]_64 chrX:10067656-10067776 1.00e+00 120 chrX:13128071-13128191 6.76e-01 120 chrX:1392919-1393039 3.96e-02 36_[+1(1.16e-05)]_76 chrX:21324139-21324259 2.60e-01 120 chr3L:1414132-1414252 9.94e-01 120 chr2L:3775977-3776097 8.83e-01 120 chrX:6375771-6375891 1.00e+00 120 chr2L:488381-488501 9.31e-01 120 chr3L:10845194-10845314 2.62e-02 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************