******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/jim.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:9692554-9692674 1.0000 120 chr3R:13039171-13039291 1.0000 120 chr3R:21834807-21834927 1.0000 120 chrX:3412900-3413020 1.0000 120 chrX:13966767-13966887 1.0000 120 chrX:1566688-1566808 1.0000 120 chr3L:4408406-4408526 1.0000 120 chrX:18926923-18927043 1.0000 120 chrX:2918701-2918821 1.0000 120 chr2R:11727689-11727809 1.0000 120 chrX:13540116-13540236 1.0000 120 chr2L:4982240-4982360 1.0000 120 chr2R:23797957-23798077 1.0000 120 chrX:8060594-8060714 1.0000 120 chr3L:19481305-19481425 1.0000 120 chr2L:488820-488940 1.0000 120 chr3L:2636157-2636277 1.0000 120 chr2L:11954951-11955071 1.0000 120 chrX:5756447-5756567 1.0000 120 chr3R:18448175-18448295 1.0000 120 chr2L:1666938-1667058 1.0000 120 chrX:2349659-2349779 1.0000 120 chr2R:8737969-8738089 1.0000 120 chr3R:11457383-11457503 1.0000 120 chr3L:17613324-17613444 1.0000 120 chr3R:21836008-21836128 1.0000 120 chr3L:2801541-2801661 1.0000 120 chr3R:21093516-21093636 1.0000 120 chr3L:22826345-22826465 1.0000 120 chr3R:27272361-27272481 1.0000 120 chr2R:16576569-16576689 1.0000 120 chr3R:17701671-17701791 1.0000 120 chrX:2964793-2964913 1.0000 120 chr3R:30273251-30273371 1.0000 120 chr3R:17825593-17825713 1.0000 120 chr2R:21156320-21156440 1.0000 120 chr3L:18213897-18214017 1.0000 120 chr3L:22823341-22823461 1.0000 120 chr2R:18646795-18646915 1.0000 120 chr3L:20544949-20545069 1.0000 120 chrX:2295604-2295724 1.0000 120 chr3R:9885957-9886077 1.0000 120 chr2L:18866733-18866853 1.0000 120 chr3L:22820363-22820483 1.0000 120 chr3R:17680391-17680511 1.0000 120 chr3L:18897570-18897690 1.0000 120 chr3R:18669353-18669473 1.0000 120 chrX:1611394-1611514 1.0000 120 chr2L:9457920-9458040 1.0000 120 chr2R:9307949-9308069 1.0000 120 chr3L:17668354-17668474 1.0000 120 chr3R:30095639-30095759 1.0000 120 chr3R:20765473-20765593 1.0000 120 chrX:8889035-8889155 1.0000 120 chr2L:10506139-10506259 1.0000 120 chr3L:967974-968094 1.0000 120 chr2L:16318392-16318512 1.0000 120 chrX:13960939-13961059 1.0000 120 chrX:2274720-2274840 1.0000 120 chr3L:4698643-4698763 1.0000 120 chrX:7232155-7232275 1.0000 120 chr3L:10696758-10696878 1.0000 120 chr2L:247550-247670 1.0000 120 chrX:20509954-20510074 1.0000 120 chr2L:5229980-5230100 1.0000 120 chr3R:11449946-11450066 1.0000 120 chr3R:21604661-21604781 1.0000 120 chrX:15530226-15530346 1.0000 120 chr2R:10601948-10602068 1.0000 120 chr3L:22838444-22838564 1.0000 120 chr3L:21254618-21254738 1.0000 120 chr2R:11365044-11365164 1.0000 120 chrX:17109759-17109879 1.0000 120 chr3L:70734-70854 1.0000 120 chrX:8894820-8894940 1.0000 120 chr2R:22545492-22545612 1.0000 120 chr2L:6087839-6087959 1.0000 120 chr2R:18344949-18345069 1.0000 120 chrX:9032561-9032681 1.0000 120 chr2R:21250464-21250584 1.0000 120 chr2R:16219972-16220092 1.0000 120 chr3R:7310713-7310833 1.0000 120 chr2R:16721238-16721358 1.0000 120 chr2R:15483701-15483821 1.0000 120 chrX:1574240-1574360 1.0000 120 chr3L:10804882-10805002 1.0000 120 chrX:1595826-1595946 1.0000 120 chr3L:2765158-2765278 1.0000 120 chr3L:3442910-3443030 1.0000 120 chr3R:30100749-30100869 1.0000 120 chr2L:5292222-5292342 1.0000 120 chr3L:17922853-17922973 1.0000 120 chr3L:3242303-3242423 1.0000 120 chrX:1566055-1566175 1.0000 120 chr3R:21652915-21653035 1.0000 120 chr2L:5208458-5208578 1.0000 120 chr2L:9237347-9237467 1.0000 120 chr2R:9028305-9028425 1.0000 120 chr2R:17806794-17806914 1.0000 120 chrX:1947342-1947462 1.0000 120 chr3R:23496029-23496149 1.0000 120 chr2R:10874153-10874273 1.0000 120 chrX:3390220-3390340 1.0000 120 chr3R:14451639-14451759 1.0000 120 chrX:13396070-13396190 1.0000 120 chr2L:5287972-5288092 1.0000 120 chrX:3407538-3407658 1.0000 120 chr2R:19303920-19304040 1.0000 120 chr3L:8688681-8688801 1.0000 120 chr3R:13992326-13992446 1.0000 120 chr2R:2567068-2567188 1.0000 120 chrX:4444978-4445098 1.0000 120 chr2L:13642440-13642560 1.0000 120 chr3L:3247231-3247351 1.0000 120 chr3R:10539797-10539917 1.0000 120 chr3L:19930092-19930212 1.0000 120 chrX:1826732-1826852 1.0000 120 chr3L:16709967-16710087 1.0000 120 chr2R:22896163-22896283 1.0000 120 chr2L:14531505-14531625 1.0000 120 chrX:11601346-11601466 1.0000 120 chr2L:20084871-20084991 1.0000 120 chr3L:69480-69600 1.0000 120 chr3L:5639868-5639988 1.0000 120 chr2L:5326209-5326329 1.0000 120 chr2R:10545090-10545210 1.0000 120 chr3L:11119528-11119648 1.0000 120 chr2R:21248811-21248931 1.0000 120 chr3R:14716238-14716358 1.0000 120 chr3R:14654658-14654778 1.0000 120 chr3L:14003612-14003732 1.0000 120 chr2R:11607609-11607729 1.0000 120 chr2L:9671298-9671418 1.0000 120 chr3L:10787814-10787934 1.0000 120 chr3L:5571239-5571359 1.0000 120 chrX:7194771-7194891 1.0000 120 chrX:3751187-3751307 1.0000 120 chr3L:22837821-22837941 1.0000 120 chr3R:15293098-15293218 1.0000 120 chr3R:20915864-20915984 1.0000 120 chr2R:21496740-21496860 1.0000 120 chrX:1271295-1271415 1.0000 120 chr3R:19569217-19569337 1.0000 120 chr3L:21389723-21389843 1.0000 120 chr2L:7493626-7493746 1.0000 120 chrX:12734477-12734597 1.0000 120 chr3R:25760286-25760406 1.0000 120 chr2L:11175545-11175665 1.0000 120 chr2R:6518876-6518996 1.0000 120 chr2R:17398154-17398274 1.0000 120 chr3R:18981290-18981410 1.0000 120 chr2L:11053537-11053657 1.0000 120 chr3R:21837543-21837663 1.0000 120 chr2R:23034019-23034139 1.0000 120 chrX:13235042-13235162 1.0000 120 chrX:8661404-8661524 1.0000 120 chr3R:5670957-5671077 1.0000 120 chr2R:19179183-19179303 1.0000 120 chr3R:24039299-24039419 1.0000 120 chr2R:18536206-18536326 1.0000 120 chr2R:22680890-22681010 1.0000 120 chr3R:9886677-9886797 1.0000 120 chr2R:19617937-19618057 1.0000 120 chr2R:10214275-10214395 1.0000 120 chrX:9931046-9931166 1.0000 120 chr3L:7263816-7263936 1.0000 120 chr3R:21921521-21921641 1.0000 120 chrX:20244328-20244448 1.0000 120 chr2L:4937223-4937343 1.0000 120 chr2L:13783981-13784101 1.0000 120 chr3L:15544736-15544856 1.0000 120 chr2R:14220909-14221029 1.0000 120 chr2R:17804183-17804303 1.0000 120 chr2L:7466495-7466615 1.0000 120 chr3L:7742144-7742264 1.0000 120 chr2R:18308081-18308201 1.0000 120 chr3L:13477503-13477623 1.0000 120 chr3L:4747255-4747375 1.0000 120 chr2L:13845263-13845383 1.0000 120 chr3L:8657230-8657350 1.0000 120 chr2L:16598132-16598252 1.0000 120 chr3R:30454510-30454630 1.0000 120 chr2R:18304890-18305010 1.0000 120 chr2R:12635689-12635809 1.0000 120 chr2L:5207489-5207609 1.0000 120 chr3L:548526-548646 1.0000 120 chr3L:16194520-16194640 1.0000 120 chr3L:13923940-13924060 1.0000 120 chr2L:9493990-9494110 1.0000 120 chrX:6343737-6343857 1.0000 120 chr2L:14997418-14997538 1.0000 120 chr3L:11295001-11295121 1.0000 120 chr2L:11155707-11155827 1.0000 120 chr3L:15625419-15625539 1.0000 120 chr3L:4148739-4148859 1.0000 120 chrX:1577258-1577378 1.0000 120 chr2L:598008-598128 1.0000 120 chr3R:19310474-19310594 1.0000 120 chr2R:11096424-11096544 1.0000 120 chrX:10486412-10486532 1.0000 120 chrX:3949904-3950024 1.0000 120 chrX:8682018-8682138 1.0000 120 chr3R:22044077-22044197 1.0000 120 chr3L:10775956-10776076 1.0000 120 chr3L:18760787-18760907 1.0000 120 chr2L:14534036-14534156 1.0000 120 chr3L:3050303-3050423 1.0000 120 chr3L:14456089-14456209 1.0000 120 chr3L:5845559-5845679 1.0000 120 chr2R:18662056-18662176 1.0000 120 chr3L:13401181-13401301 1.0000 120 chr3R:4130446-4130566 1.0000 120 chr3L:13497771-13497891 1.0000 120 chr3L:14634827-14634947 1.0000 120 chr3L:18190999-18191119 1.0000 120 chr3R:21190906-21191026 1.0000 120 chr2R:24631059-24631179 1.0000 120 chrX:12580155-12580275 1.0000 120 chr3L:3304194-3304314 1.0000 120 chr3R:27129870-27129990 1.0000 120 chrX:11710513-11710633 1.0000 120 chrX:18929281-18929401 1.0000 120 chr3R:17706577-17706697 1.0000 120 chr3L:14510158-14510278 1.0000 120 chr2L:8989094-8989214 1.0000 120 chr3L:2805319-2805439 1.0000 120 chr2R:11595174-11595294 1.0000 120 chr2L:7993238-7993358 1.0000 120 chrX:3964950-3965070 1.0000 120 chr2L:17450274-17450394 1.0000 120 chr3L:8702109-8702229 1.0000 120 chr2R:6146132-6146252 1.0000 120 chr2R:23432162-23432282 1.0000 120 chr2R:12979784-12979904 1.0000 120 chrX:20159075-20159195 1.0000 120 chr3L:18026106-18026226 1.0000 120 chr3L:18771152-18771272 1.0000 120 chr3L:8360354-8360474 1.0000 120 chr3L:3239913-3240033 1.0000 120 chr3R:9941069-9941189 1.0000 120 chr2L:8485691-8485811 1.0000 120 chr2R:19268899-19269019 1.0000 120 chr3L:15637782-15637902 1.0000 120 chrX:12669812-12669932 1.0000 120 chr3R:30526919-30527039 1.0000 120 chrX:17857094-17857214 1.0000 120 chr3L:22840098-22840218 1.0000 120 chrX:10728217-10728337 1.0000 120 chrX:3720401-3720521 1.0000 120 chrX:7304938-7305058 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_jim/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/jim.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.225 G 0.232 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.225 G 0.232 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-1 width = 8 sites = 102 llr = 872 E-value = 3.0e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9aa7aa99 pos.-specific C :::2::1: probability G 1::::::1 matrix T :::1:::: bits 2.2 1.9 * * 1.7 ** ** 1.5 *** ** Relative 1.3 *** **** Entropy 1.1 *** **** (12.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3720401-3720521 56 2.58e-05 Gaaacaacgg aaaaaaaa ggcaacgcaa chr2R:12979784-12979904 58 2.58e-05 AAGAGCAGTA AAAAAAAA TCAGTCACAC chr3L:18190999-18191119 68 2.58e-05 GCAAAAATTA AAAAAAAA ATGAGAGAAG chr3L:13497771-13497891 5 2.58e-05 CATA AAAAAAAA ATAAAAACGA chr3L:14456089-14456209 64 2.58e-05 TCCaaacaaa aaaaaaaa aagacaaaaa chr3L:3050303-3050423 63 2.58e-05 ACACTGGTCG AAAAAAAA GAAAAAAACA chr2L:14534036-14534156 77 2.58e-05 aaagaaaaca aaaaaaaa aaaaaaaaCG chrX:8682018-8682138 19 2.58e-05 CAAAAATCAC AAAAAAAA ACACCCAAAA chr3R:19310474-19310594 28 2.58e-05 CAGCaaataa aaaaaaaa aaacaaaacg chr2R:18308081-18308201 82 2.58e-05 GGAATGAAAT AAAAAAAA GAAGAGGATT chrX:20244328-20244448 83 2.58e-05 GCGGTATCGA AAAAAAAA ACGAAAAAAG chr2R:19617937-19618057 36 2.58e-05 AAAAAATAAT AAAAAAAA TGAAATCAAA chrX:13235042-13235162 58 2.58e-05 CCGCCCTCCT aaaaaaaa acaaataaaa chr3R:18981290-18981410 59 2.58e-05 CACCGATTAA AAAAAAAA GAAACAAATG chrX:12734477-12734597 69 2.58e-05 AGGGGAGGGA AAAAAAAA CCTTAAGCAC chr3R:19569217-19569337 57 2.58e-05 ATCTGCCGGT AAAAAAAA AGAACACAAA chr2L:9671298-9671418 20 2.58e-05 TGaacaataa aaaaaaaa agaaaaaaTA chr3R:14716238-14716358 1 2.58e-05 . aaaaaaaa aaacaacagc chr3L:69480-69600 76 2.58e-05 AAAAAAACGT AAAAAAAA CTGCCTGAAG chrX:11601346-11601466 16 2.58e-05 GTGTGCTGCA AAAAAAAA TGGGGGGGAG chr3L:16709967-16710087 31 2.58e-05 AGAACGCAGT AAAAAAAA ACTGGTCTCA chr3R:10539797-10539917 87 2.58e-05 aaaaaaaaaa aaaaaaaa CACCAAGCCA chr3L:8688681-8688801 1 2.58e-05 . aaaaaaaa TGGAAACAAC chr3R:14451639-14451759 61 2.58e-05 accaaaaaaa aaaaaaaa agaaTTCCCC chrX:3390220-3390340 71 2.58e-05 ACTGCAAAAA AAAAAAAA GCAGCAACGA chr2R:10874153-10874273 93 2.58e-05 CGCGGAGTAT AAAAAAAA TAAACGAAAA chrX:1566055-1566175 71 2.58e-05 ataaattgaa aaaaaaaa aaaacgaaaa chr2L:5292222-5292342 54 2.58e-05 GAGCGATACA AAAAAAAA ACACTGAATT chr3R:7310713-7310833 39 2.58e-05 TCTTAAAACA AAAAAAAA ACCATAAAAG chr2R:22545492-22545612 53 2.58e-05 CATTATAACC AAAAAAAA AAAAAAGATT chrX:17109759-17109879 108 2.58e-05 TGAGCTCAAA AAAAAAAA AAGGC chrX:15530226-15530346 1 2.58e-05 . aaaaaaaa CAGAAGAGTA chr3R:11449946-11450066 30 2.58e-05 GTACGGACGG AAAAAAAA GGCCAAAAAT chrX:13960939-13961059 62 2.58e-05 CAGAGCGCAA AAAAAAAA GAGAGGTAGC chr3R:20765473-20765593 49 2.58e-05 aaatcagcca aaaaaaaa ccaaacaaaa chrX:1611394-1611514 51 2.58e-05 TTCTGCCTAA AAAAAAAA ACGCTCCGAT chr3L:18897570-18897690 102 2.58e-05 GCAAAAAAGG AAAAAAAA AAGAACAAAA chr3L:18213897-18214017 70 2.58e-05 aacaataaaa aaaaaaaa gagaaacaac chr3R:17825593-17825713 87 2.58e-05 TGGGATCCAA AAAAAAAA AAACAAATCA chr3R:17701671-17701791 52 2.58e-05 cacaaataaa aaaaaaaa agataaaaaT chr3R:21093516-21093636 61 2.58e-05 GTTATAATAT AAAAAAAA GAAAGGGGAG chr3R:11457383-11457503 90 2.58e-05 AGGAATTCAA AAAAAAAA CCCGATCTTA chr2R:8737969-8738089 80 2.58e-05 GGGGGTTAAA AAAAAAAA AATTGAAAAT chrX:5756447-5756567 57 2.58e-05 CCAGCCACaa aaaaaaaa aaaacaaaaa chr2L:11954951-11955071 62 2.58e-05 AGAGAAACAG AAAAAAAA GGATCATCGC chr3L:19481305-19481425 72 2.58e-05 CCCCCCAAAA AAAAAAAA AAAATGTGGG chrX:1566688-1566808 38 2.58e-05 ATCGAAAATA AAAAAAAA ACAGAATGGG chrX:3412900-3413020 59 2.58e-05 aacaaaaaaa aaaaaaaa aaaGGGTTAA chr3R:17706577-17706697 68 4.76e-05 ATAGTaatca aaacaaaa taaaaatcat chrX:1577258-1577378 31 4.76e-05 GGCTGAATCC AAACAAAA GCCCAaaaaa chrX:6343737-6343857 86 4.76e-05 TCTTTCACAG AAACAAAA AGAAAGAGAA chr2L:7493626-7493746 82 4.76e-05 GGAAACACAT AAACAAAA TTCCATAAGT chr3R:20915864-20915984 83 4.76e-05 AACACAAAGC AAACAAAA TGAAATATAT chr3R:15293098-15293218 60 4.76e-05 CAGGGCAATA AAACAAAA ACGAAAAACG chrX:13396070-13396190 23 4.76e-05 AGAAATAAAA AAACAAAA CCCATGATGT chr2R:9028305-9028425 59 4.76e-05 AAAATGATGA AAACAAAA ATTGAGAAAT chr3R:21652915-21653035 93 4.76e-05 GCAAGAAAAT AAACAAAA AGTAAAACGG chr3L:4698643-4698763 100 4.76e-05 AAATGAGAAG AAACAAAA AGTTAGCAAC chrX:2295604-2295724 39 4.76e-05 AGAAGCCaaa aaacaaaa aggaaaaacg chr3R:18448175-18448295 96 4.76e-05 CGCAGCCCAA AAACAAAA CAACAATAAA chr3L:18771152-18771272 45 9.18e-05 GGGGAATGAG AAAAAAAG AAAGAAAAAC chr3L:2805319-2805439 16 9.18e-05 ataaataaat aaaaaaaG GGGGGGAACT chr3R:21190906-21191026 105 9.18e-05 CCACCACTTG AAAAAAAG AGAGAGCA chr3L:13401181-13401301 16 9.18e-05 ACTTGGCCCG AAAAAAAG GTACAAATCG chr3L:4148739-4148859 80 9.18e-05 CGGTTCTCCA AAAAAACA CTCAGTCTGA chr3L:21389723-21389843 99 9.18e-05 GAAAGCGGTG AAAAAAAG TTTCGCATTT chrX:1271295-1271415 7 9.18e-05 ttgtac aaaaaaag aacaacaaat chr3L:11119528-11119648 36 9.18e-05 GAGGGGGAGC AAAAAAAG GCGACTTCTT chr2R:10545090-10545210 75 9.18e-05 AAACACGAAC AAAAAAAG CACAAGAAAC chr2L:13642440-13642560 112 9.18e-05 AGGAAAAAAT AAAAAACA A chrX:8889035-8889155 30 9.18e-05 GGGGAGGGGG AAAAAACA CAAaagacga chr3R:21836008-21836128 33 9.18e-05 ATCGCGAAGA AAAAAACA TATGTAGGTT chr2L:9692554-9692674 42 9.18e-05 GGGAGGGGGG AAAAAAAG ACGCGAAAAA chr2L:14997418-14997538 6 1.18e-04 caaac aaataaaa acacaaTTCG chr2L:14531505-14531625 71 1.18e-04 ATTGTGTAAA AAATAAAA AATAAAAGGC chr3L:2765158-2765278 111 1.18e-04 GAGATaaaat aaataaaa aa chrX:9032561-9032681 93 1.18e-04 AAAAAAATGA AAATAAAA AATATCATAA chr2R:11727689-11727809 106 1.18e-04 ACACCCAAAC AAATAAAA CTCAAAA chrX:13966767-13966887 8 1.18e-04 tgaaata aaataaaa CTTTTGTCAT chr3L:22826345-22826465 67 1.41e-04 ATAAACAACA GAAAAAAA TCGAGCACCC chrX:8060594-8060714 112 1.41e-04 TTCCACCACC GAAAAAAA T chrX:17857094-17857214 78 1.78e-04 AGCTGCAGCA AAACAACA TATAGCGGTA chr3L:15637782-15637902 82 1.78e-04 AAAGGTGAGC AAACAAAG GAAGTGCGCG chr3R:9941069-9941189 9 1.78e-04 AATACAAC AAACAACA ATCGCTCTAA chr3L:8702109-8702229 30 1.78e-04 GGTGCAGGGT AAACAAAG GCGTTGGCCA chr3L:3304194-3304314 26 1.78e-04 TTTTATCGCA AAACAACA GCAACACTGC chr3L:13477503-13477623 97 1.78e-04 GGCCCCGTAA AAACAACA ACAAACAACC chrX:1947342-1947462 57 1.78e-04 ACCAAAAGAA AAACAACA AAAAGGGCAT chr3L:967974-968094 15 1.78e-04 AGAATAACGA AAACAACA GCTACGGATG chr3R:23496029-23496149 48 2.01e-04 TTAAAAAACG AAAAGAAA ATTTAATACA chr2R:21250464-21250584 53 2.01e-04 AAGTCAAAAG AAAAGAAA ACTTCAAGTT chr2R:16219972-16220092 45 2.19e-04 TCATGTTGGC GAACAAAA CGAGTCTTTG chr2R:19179183-19179303 29 2.38e-04 AGGGGATTAC AAAAAACG AGACATCGTT chr3R:30454510-30454630 70 2.84e-04 GTGCTGTGCG AAATAACA CACCGAAAAG chr2R:19303920-19304040 75 2.84e-04 GCTCAAAAGT AAATAAAG AACGTTATTT chr3R:17680391-17680511 46 3.10e-04 GCCAAAAGAG AATAAAAA GCACAATAAA chr2R:21156320-21156440 82 3.10e-04 ACGTATAAAT AATAAAAA GTGAGCGCAC chr2R:6518876-6518996 93 3.68e-04 TCATTTAGGC AAACGAAA CTCGTATTGA chr2L:10506139-10506259 17 3.68e-04 GGAGTATCCC GAAAAACA CGCTGTTCAC chr3L:16194520-16194640 112 4.13e-04 AGTTAAAAAT GAATAAAA T chrX:9931046-9931166 37 4.13e-04 aacgcagcga GAATAAAA CTCGGCTTGG chr3L:2636157-2636277 105 4.13e-04 CCAGCCGAGC aacaaaaa caactaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3720401-3720521 2.6e-05 55_[+1]_57 chr2R:12979784-12979904 2.6e-05 57_[+1]_55 chr3L:18190999-18191119 2.6e-05 67_[+1]_45 chr3L:13497771-13497891 2.6e-05 4_[+1]_108 chr3L:14456089-14456209 2.6e-05 63_[+1]_49 chr3L:3050303-3050423 2.6e-05 62_[+1]_50 chr2L:14534036-14534156 2.6e-05 76_[+1]_36 chrX:8682018-8682138 2.6e-05 18_[+1]_94 chr3R:19310474-19310594 2.6e-05 27_[+1]_85 chr2R:18308081-18308201 2.6e-05 81_[+1]_31 chrX:20244328-20244448 2.6e-05 82_[+1]_30 chr2R:19617937-19618057 2.6e-05 35_[+1]_77 chrX:13235042-13235162 2.6e-05 57_[+1]_55 chr3R:18981290-18981410 2.6e-05 58_[+1]_54 chrX:12734477-12734597 2.6e-05 68_[+1]_44 chr3R:19569217-19569337 2.6e-05 56_[+1]_56 chr2L:9671298-9671418 2.6e-05 19_[+1]_93 chr3R:14716238-14716358 2.6e-05 [+1]_112 chr3L:69480-69600 2.6e-05 75_[+1]_37 chrX:11601346-11601466 2.6e-05 15_[+1]_97 chr3L:16709967-16710087 2.6e-05 30_[+1]_82 chr3R:10539797-10539917 2.6e-05 86_[+1]_26 chr3L:8688681-8688801 2.6e-05 [+1]_112 chr3R:14451639-14451759 2.6e-05 60_[+1]_52 chrX:3390220-3390340 2.6e-05 70_[+1]_42 chr2R:10874153-10874273 2.6e-05 92_[+1]_20 chrX:1566055-1566175 2.6e-05 70_[+1]_42 chr2L:5292222-5292342 2.6e-05 53_[+1]_59 chr3R:7310713-7310833 2.6e-05 38_[+1]_74 chr2R:22545492-22545612 2.6e-05 52_[+1]_60 chrX:17109759-17109879 2.6e-05 107_[+1]_5 chrX:15530226-15530346 2.6e-05 [+1]_112 chr3R:11449946-11450066 2.6e-05 29_[+1]_83 chrX:13960939-13961059 2.6e-05 61_[+1]_51 chr3R:20765473-20765593 2.6e-05 48_[+1]_64 chrX:1611394-1611514 2.6e-05 50_[+1]_62 chr3L:18897570-18897690 2.6e-05 101_[+1]_11 chr3L:18213897-18214017 2.6e-05 69_[+1]_43 chr3R:17825593-17825713 2.6e-05 86_[+1]_26 chr3R:17701671-17701791 2.6e-05 51_[+1]_61 chr3R:21093516-21093636 2.6e-05 60_[+1]_52 chr3R:11457383-11457503 2.6e-05 89_[+1]_23 chr2R:8737969-8738089 2.6e-05 79_[+1]_33 chrX:5756447-5756567 2.6e-05 56_[+1]_56 chr2L:11954951-11955071 2.6e-05 61_[+1]_51 chr3L:19481305-19481425 2.6e-05 71_[+1]_41 chrX:1566688-1566808 2.6e-05 37_[+1]_75 chrX:3412900-3413020 2.6e-05 58_[+1]_54 chr3R:17706577-17706697 4.8e-05 67_[+1]_45 chrX:1577258-1577378 4.8e-05 30_[+1]_82 chrX:6343737-6343857 4.8e-05 85_[+1]_27 chr2L:7493626-7493746 4.8e-05 81_[+1]_31 chr3R:20915864-20915984 4.8e-05 82_[+1]_30 chr3R:15293098-15293218 4.8e-05 59_[+1]_53 chrX:13396070-13396190 4.8e-05 22_[+1]_90 chr2R:9028305-9028425 4.8e-05 58_[+1]_54 chr3R:21652915-21653035 4.8e-05 92_[+1]_20 chr3L:4698643-4698763 4.8e-05 99_[+1]_13 chrX:2295604-2295724 4.8e-05 38_[+1]_74 chr3R:18448175-18448295 4.8e-05 95_[+1]_17 chr3L:18771152-18771272 9.2e-05 44_[+1]_68 chr3L:2805319-2805439 9.2e-05 15_[+1]_97 chr3R:21190906-21191026 9.2e-05 104_[+1]_8 chr3L:13401181-13401301 9.2e-05 15_[+1]_97 chr3L:4148739-4148859 9.2e-05 79_[+1]_33 chr3L:21389723-21389843 9.2e-05 98_[+1]_14 chrX:1271295-1271415 9.2e-05 6_[+1]_106 chr3L:11119528-11119648 9.2e-05 35_[+1]_77 chr2R:10545090-10545210 9.2e-05 74_[+1]_38 chr2L:13642440-13642560 9.2e-05 111_[+1]_1 chrX:8889035-8889155 9.2e-05 29_[+1]_83 chr3R:21836008-21836128 9.2e-05 32_[+1]_80 chr2L:9692554-9692674 9.2e-05 41_[+1]_71 chr2L:14997418-14997538 0.00012 5_[+1]_107 chr2L:14531505-14531625 0.00012 70_[+1]_42 chr3L:2765158-2765278 0.00012 110_[+1]_2 chrX:9032561-9032681 0.00012 92_[+1]_20 chr2R:11727689-11727809 0.00012 105_[+1]_7 chrX:13966767-13966887 0.00012 7_[+1]_105 chr3L:22826345-22826465 0.00014 66_[+1]_46 chrX:8060594-8060714 0.00014 111_[+1]_1 chrX:17857094-17857214 0.00018 77_[+1]_35 chr3L:15637782-15637902 0.00018 81_[+1]_31 chr3R:9941069-9941189 0.00018 8_[+1]_104 chr3L:8702109-8702229 0.00018 29_[+1]_83 chr3L:3304194-3304314 0.00018 25_[+1]_87 chr3L:13477503-13477623 0.00018 96_[+1]_16 chrX:1947342-1947462 0.00018 56_[+1]_56 chr3L:967974-968094 0.00018 14_[+1]_98 chr3R:23496029-23496149 0.0002 47_[+1]_65 chr2R:21250464-21250584 0.0002 52_[+1]_60 chr2R:16219972-16220092 0.00022 44_[+1]_68 chr2R:19179183-19179303 0.00024 28_[+1]_84 chr3R:30454510-30454630 0.00028 69_[+1]_43 chr2R:19303920-19304040 0.00028 74_[+1]_38 chr3R:17680391-17680511 0.00031 45_[+1]_67 chr2R:21156320-21156440 0.00031 81_[+1]_31 chr2R:6518876-6518996 0.00037 92_[+1]_20 chr2L:10506139-10506259 0.00037 16_[+1]_96 chr3L:16194520-16194640 0.00041 111_[+1]_1 chrX:9931046-9931166 0.00041 36_[+1]_76 chr3L:2636157-2636277 0.00041 104_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=102 chrX:3720401-3720521 ( 56) AAAAAAAA 1 chr2R:12979784-12979904 ( 58) AAAAAAAA 1 chr3L:18190999-18191119 ( 68) AAAAAAAA 1 chr3L:13497771-13497891 ( 5) AAAAAAAA 1 chr3L:14456089-14456209 ( 64) AAAAAAAA 1 chr3L:3050303-3050423 ( 63) AAAAAAAA 1 chr2L:14534036-14534156 ( 77) AAAAAAAA 1 chrX:8682018-8682138 ( 19) AAAAAAAA 1 chr3R:19310474-19310594 ( 28) AAAAAAAA 1 chr2R:18308081-18308201 ( 82) AAAAAAAA 1 chrX:20244328-20244448 ( 83) AAAAAAAA 1 chr2R:19617937-19618057 ( 36) AAAAAAAA 1 chrX:13235042-13235162 ( 58) AAAAAAAA 1 chr3R:18981290-18981410 ( 59) AAAAAAAA 1 chrX:12734477-12734597 ( 69) AAAAAAAA 1 chr3R:19569217-19569337 ( 57) AAAAAAAA 1 chr2L:9671298-9671418 ( 20) AAAAAAAA 1 chr3R:14716238-14716358 ( 1) AAAAAAAA 1 chr3L:69480-69600 ( 76) AAAAAAAA 1 chrX:11601346-11601466 ( 16) AAAAAAAA 1 chr3L:16709967-16710087 ( 31) AAAAAAAA 1 chr3R:10539797-10539917 ( 87) AAAAAAAA 1 chr3L:8688681-8688801 ( 1) AAAAAAAA 1 chr3R:14451639-14451759 ( 61) AAAAAAAA 1 chrX:3390220-3390340 ( 71) AAAAAAAA 1 chr2R:10874153-10874273 ( 93) AAAAAAAA 1 chrX:1566055-1566175 ( 71) AAAAAAAA 1 chr2L:5292222-5292342 ( 54) AAAAAAAA 1 chr3R:7310713-7310833 ( 39) AAAAAAAA 1 chr2R:22545492-22545612 ( 53) AAAAAAAA 1 chrX:17109759-17109879 ( 108) AAAAAAAA 1 chrX:15530226-15530346 ( 1) AAAAAAAA 1 chr3R:11449946-11450066 ( 30) AAAAAAAA 1 chrX:13960939-13961059 ( 62) AAAAAAAA 1 chr3R:20765473-20765593 ( 49) AAAAAAAA 1 chrX:1611394-1611514 ( 51) AAAAAAAA 1 chr3L:18897570-18897690 ( 102) AAAAAAAA 1 chr3L:18213897-18214017 ( 70) AAAAAAAA 1 chr3R:17825593-17825713 ( 87) AAAAAAAA 1 chr3R:17701671-17701791 ( 52) AAAAAAAA 1 chr3R:21093516-21093636 ( 61) AAAAAAAA 1 chr3R:11457383-11457503 ( 90) AAAAAAAA 1 chr2R:8737969-8738089 ( 80) AAAAAAAA 1 chrX:5756447-5756567 ( 57) AAAAAAAA 1 chr2L:11954951-11955071 ( 62) AAAAAAAA 1 chr3L:19481305-19481425 ( 72) AAAAAAAA 1 chrX:1566688-1566808 ( 38) AAAAAAAA 1 chrX:3412900-3413020 ( 59) AAAAAAAA 1 chr3R:17706577-17706697 ( 68) AAACAAAA 1 chrX:1577258-1577378 ( 31) AAACAAAA 1 chrX:6343737-6343857 ( 86) AAACAAAA 1 chr2L:7493626-7493746 ( 82) AAACAAAA 1 chr3R:20915864-20915984 ( 83) AAACAAAA 1 chr3R:15293098-15293218 ( 60) AAACAAAA 1 chrX:13396070-13396190 ( 23) AAACAAAA 1 chr2R:9028305-9028425 ( 59) AAACAAAA 1 chr3R:21652915-21653035 ( 93) AAACAAAA 1 chr3L:4698643-4698763 ( 100) AAACAAAA 1 chrX:2295604-2295724 ( 39) AAACAAAA 1 chr3R:18448175-18448295 ( 96) AAACAAAA 1 chr3L:18771152-18771272 ( 45) AAAAAAAG 1 chr3L:2805319-2805439 ( 16) AAAAAAAG 1 chr3R:21190906-21191026 ( 105) AAAAAAAG 1 chr3L:13401181-13401301 ( 16) AAAAAAAG 1 chr3L:4148739-4148859 ( 80) AAAAAACA 1 chr3L:21389723-21389843 ( 99) AAAAAAAG 1 chrX:1271295-1271415 ( 7) AAAAAAAG 1 chr3L:11119528-11119648 ( 36) AAAAAAAG 1 chr2R:10545090-10545210 ( 75) AAAAAAAG 1 chr2L:13642440-13642560 ( 112) AAAAAACA 1 chrX:8889035-8889155 ( 30) AAAAAACA 1 chr3R:21836008-21836128 ( 33) AAAAAACA 1 chr2L:9692554-9692674 ( 42) AAAAAAAG 1 chr2L:14997418-14997538 ( 6) AAATAAAA 1 chr2L:14531505-14531625 ( 71) AAATAAAA 1 chr3L:2765158-2765278 ( 111) AAATAAAA 1 chrX:9032561-9032681 ( 93) AAATAAAA 1 chr2R:11727689-11727809 ( 106) AAATAAAA 1 chrX:13966767-13966887 ( 8) AAATAAAA 1 chr3L:22826345-22826465 ( 67) GAAAAAAA 1 chrX:8060594-8060714 ( 112) GAAAAAAA 1 chrX:17857094-17857214 ( 78) AAACAACA 1 chr3L:15637782-15637902 ( 82) AAACAAAG 1 chr3R:9941069-9941189 ( 9) AAACAACA 1 chr3L:8702109-8702229 ( 30) AAACAAAG 1 chr3L:3304194-3304314 ( 26) AAACAACA 1 chr3L:13477503-13477623 ( 97) AAACAACA 1 chrX:1947342-1947462 ( 57) AAACAACA 1 chr3L:967974-968094 ( 15) AAACAACA 1 chr3R:23496029-23496149 ( 48) AAAAGAAA 1 chr2R:21250464-21250584 ( 53) AAAAGAAA 1 chr2R:16219972-16220092 ( 45) GAACAAAA 1 chr2R:19179183-19179303 ( 29) AAAAAACG 1 chr3R:30454510-30454630 ( 70) AAATAACA 1 chr2R:19303920-19304040 ( 75) AAATAAAG 1 chr3R:17680391-17680511 ( 46) AATAAAAA 1 chr2R:21156320-21156440 ( 82) AATAAAAA 1 chr2R:6518876-6518996 ( 93) AAACGAAA 1 chr2L:10506139-10506259 ( 17) GAAAAACA 1 chr3L:16194520-16194640 ( 112) GAATAAAA 1 chrX:9931046-9931166 ( 37) GAATAAAA 1 chr3L:2636157-2636277 ( 105) AACAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0404 E= 3.0e-076 182 -1332 -198 -1332 190 -1332 -1332 -1332 186 -452 -1332 -381 136 -6 -1332 -149 186 -1332 -298 -1332 190 -1332 -1332 -1332 171 -82 -1332 -1332 171 -1332 -87 -1332 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 3.0e-076 0.941176 0.000000 0.058824 0.000000 1.000000 0.000000 0.000000 0.000000 0.970588 0.009804 0.000000 0.019608 0.686275 0.215686 0.000000 0.098039 0.970588 0.000000 0.029412 0.000000 1.000000 0.000000 0.000000 0.000000 0.872549 0.127451 0.000000 0.000000 0.872549 0.000000 0.127451 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 regular expression -------------------------------------------------------------------------------- AAA[AC]AAAA -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-2 width = 8 sites = 119 llr = 972 E-value = 6.9e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C ::1::::: probability G ::1:21:1 matrix T aa8989a9 bits 2.2 1.9 * 1.7 ** * 1.5 ** * ** Relative 1.3 ** * *** Entropy 1.1 ******** (11.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7304938-7305058 109 3.27e-05 TTATACTTCT TTTTTTTT TCTT chr3L:18026106-18026226 19 3.27e-05 GTTTTTTGCT TTTTTTTT GGGGCCGGCC chr2R:11595174-11595294 56 3.27e-05 CTCTTCCTCG TTTTTTTT TTCTTATGGA chr3R:27129870-27129990 56 3.27e-05 ttttttctgt tttttttt ttttttATCG chr3L:14634827-14634947 92 3.27e-05 GCCTGATTGG TTTTTTTT CCCTCCCGAT chr3L:13401181-13401301 41 3.27e-05 TCGAGCTCTC TTTTTTTT ATTTTTGTGT chr2R:18662056-18662176 11 3.27e-05 CATTGCAGtt tttttttt gttttttgtt chrX:3949904-3950024 92 3.27e-05 CTTCTTTCCG tttttttt cttttttttt chr3L:11295001-11295121 71 3.27e-05 GGGCTTTTTG TTTTTTTT TTCGCGACCT chr3L:16194520-16194640 44 3.27e-05 GTCGCCGTTT TTTTTTTT GTTTTTGCTG chr2L:16598132-16598252 56 3.27e-05 ATTCTTTTTT TTTTTTTT AACCGAAAGG chr3L:8657230-8657350 17 3.27e-05 ttttttttat tttttttt tAACAAGGGA chr2R:23034019-23034139 97 3.27e-05 CCAACTCTCC TTTTTTTT TATTCATTTT chr2R:17398154-17398274 93 3.27e-05 ATTATTTCGT TTTTTTTT CTGGTTGCTA chr2L:11175545-11175665 13 3.27e-05 TTTTGTTTCA TTTTTTTT CCCCCTCTGT chr3L:21389723-21389843 65 3.27e-05 cttttttctt tttttttt tgcttttttG chr3L:5571239-5571359 107 3.27e-05 TTTCTTCTTT TTTTTTTT GGCTTT chr3L:10787814-10787934 8 3.27e-05 ATTTAAT TTTTTTTT CTCCCCATTT chr2L:5326209-5326329 16 3.27e-05 GCTTTTTACT TTTTTTTT TAGTAGTAGC chr3L:19930092-19930212 40 3.27e-05 TGGTTGAACC TTTTTTTT TACTTTGCGA chrX:3407538-3407658 96 3.27e-05 tttatttact tttttttt ttttttttGG chrX:3390220-3390340 105 3.27e-05 CGGCAACGAA TTTTTTTT CTTTATTT chr3L:17922853-17922973 66 3.27e-05 TTTCATTCCT TTTTTTTT GTGAGACGGA chr3L:10804882-10805002 97 3.27e-05 TGGTGCACCC TTTTTTTT GTCAACACCC chr2R:15483701-15483821 92 3.27e-05 GTCCCCCTTG TTTTTTTT TCTGCGTTTT chrX:9032561-9032681 22 3.27e-05 TTTGGCAGTT TTTTTTTT TGTGATAAGG chr3L:70734-70854 48 3.27e-05 TTGACGTTAG TTTTTTTT TTCACTCTTT chrX:17109759-17109879 5 3.27e-05 TACC TTTTTTTT ATTTCTCCTC chr2R:10601948-10602068 99 3.27e-05 TCTGCTGATT TTTTTTTT TGTACCAGAG chr2L:5229980-5230100 74 3.27e-05 GAGCATTCTT TTTTTTTT TCGCTGCCTC chr3L:10696758-10696878 44 3.27e-05 attattttgt tttttttt tggcttttgt chrX:2274720-2274840 56 3.27e-05 CTTTCACTTC TTTTTTTT TGCAACGCAA chr3L:17668354-17668474 29 3.27e-05 CAACTGATTG TTTTTTTT GTGTTATTTC chr2R:9307949-9308069 45 3.27e-05 CGCGTGCTTG TTTTTTTT TTGTTTTTTG chr2L:9457920-9458040 5 3.27e-05 ATTA TTTTTTTT CATTTTTATC chr2L:18866733-18866853 59 3.27e-05 tttcttgttt tttttttt tGGGGAGTGG chr3R:9885957-9886077 24 3.27e-05 tttctttttt tttttttt ttgtttATAC chr3L:20544949-20545069 76 3.27e-05 ttattttact tttttttt tGGTCCCTGG chr2R:18646795-18646915 6 3.27e-05 TTTGA tttttttt atttttttgt chr3R:30273251-30273371 66 3.27e-05 CTTCCTTTTC TTTTTTTT CGCTGCCGGG chr3R:27272361-27272481 77 3.27e-05 CGCTTGCttt tttttttt ttttgttttt chr3L:2801541-2801661 58 3.27e-05 CTGTCTGCTC TTTTTTTT CTGCAGCGTC chr3L:17613324-17613444 4 3.27e-05 ttt tttttttt ttttgttttt chrX:2349659-2349779 28 3.27e-05 TTATCGTTTT TTTTTTTT TGGGCTGATA chr2L:1666938-1667058 64 3.27e-05 CGCCTCTGTT TTTTTTTT TTTTTGTGGA chrX:13540116-13540236 55 3.27e-05 CCAAAGTTTT TTTTTTTT TTtgggaggg chr2R:11727689-11727809 56 3.27e-05 GCAGGTTTTT TTTTTTTT TTGGTTGGAG chrX:2918701-2918821 66 3.27e-05 AGGCTTCTGT TTTTTTTT TATGTGCGGT chr3R:21834807-21834927 55 3.27e-05 GTTTCTGTTG TTTTTTTT TGGGGCGCGG chr3L:22840098-22840218 28 6.03e-05 AAGCCCTCCG TTTTGTTT TGCTTTAGCC chr3L:3239913-3240033 4 6.03e-05 TTT TTTTGTTT AGCTGGCGAG chr2R:23432162-23432282 51 6.03e-05 GCGTCTCACG TTTTGTTT TCTTCTTATT chrX:18929281-18929401 63 6.03e-05 TTTTTCCCAC TTTTGTTT TGTTTTGGTA chrX:11710513-11710633 10 6.03e-05 TGAGTtttg ttttgttt tgtttcttcc chr3R:21190906-21191026 79 6.03e-05 CCCCTTGGTA TTTTGTTT TTGGACAACC chr3L:15625419-15625539 68 6.03e-05 tGTTGTTTTG TTTTGTTT CTGGCTCGAC chr3L:7742144-7742264 67 6.03e-05 GTTTCGGCTT TTTTGTTT TTGGTTTTTT chr3L:7263816-7263936 10 6.03e-05 AAAACTTTG TTTTGTTT GTTTGGCAAT chr3R:18981290-18981410 93 6.03e-05 TTCCCGCTCT TTTTGTTT TTCGGCGGTA chr3R:15293098-15293218 19 6.03e-05 TCTTTTTTGT TTTTGTTT CTGGTGTTTT chrX:7194771-7194891 53 6.03e-05 GCGTCCAGTT TTTTGTTT TCTTTGATTC chr2L:20084871-20084991 57 6.03e-05 AATCACTTTG TTTTGTTT TTTTAACAAC chrX:1826732-1826852 39 6.03e-05 TTGGTTTTAT TTTTGTTT TTGCTTTTGC chr2R:17806794-17806914 110 6.03e-05 gtcgatgttg ttttgttt tgt chr2R:18344949-18345069 104 6.03e-05 ACCTTTATTT TTTTGTTT CCCTCTTCT chrX:15530226-15530346 43 6.03e-05 TGCTTCGGTt ttttgttt ttttgcttct chr2L:247550-247670 45 6.03e-05 TCGTGATGCC TTTtgttt gtacatgtgt chr2L:10506139-10506259 69 6.03e-05 tatttgcttg ttttgttt GCCTCGCCTT chr3L:22826345-22826465 44 6.03e-05 ACAGCGCTCT TTTTGTTT TCTCTATAAA chr2L:14997418-14997538 49 8.79e-05 CCTCTCGTTG TTTTTTTG TTGCAACTGA chr3R:9886677-9886797 1 8.79e-05 . tttttttG TCGGGTCTGC chr2R:22680890-22681010 61 8.79e-05 CCCCCCGAAC TTTTTTTG TAACGTTTTT chr3L:5639868-5639988 63 8.79e-05 GTTTTTTATC TTTTTTTG CAATGCGGAT chr3R:13992326-13992446 8 8.79e-05 CCCGCCG TTTTTTTG TGGCCGATTC chrX:8889035-8889155 104 8.79e-05 TGTCTTTCAG TTTTTTTG AATGTGTGT chr3R:18669353-18669473 28 8.79e-05 CCAGTTTCGG TTTTTTTG TTCAGTTCGA chr2R:6146132-6146252 55 1.15e-04 GTTTTCTCTT TTCTTTTT GCACTGTCTT chrX:3964950-3965070 97 1.15e-04 TTTCTTGTTG TTCTTTTT ATTTTATGGA chr3L:5845559-5845679 43 1.15e-04 TTTCGTATAA TTCTTTTT TTATTTGGAC chr3R:21837543-21837663 80 1.15e-04 TTTTGCTTTT TTCTTTTT GCAACTCCCA chr3L:14003612-14003732 36 1.15e-04 TGATTGCATA TTCTTTTT TCAACTAACC chr3L:11119528-11119648 49 1.15e-04 AAAAGGCGAC TTCTTTTT TAATGCGGTT chrX:20509954-20510074 48 1.15e-04 acGACttcat ttcttttt catttctttt chr3L:14510158-14510278 31 1.42e-04 TTATCAGACT TTGTTTTT TATTTGCTTT chr2L:11155707-11155827 80 1.42e-04 AGTGCGATTG TTGTTTTT TCTGGGTGAT chr2L:9237347-9237467 40 1.42e-04 CCAGGCTTTG TTGTTTTT TTATTTTTTG chr2L:5292222-5292342 76 1.42e-04 TGAATTGAAG TTGTTTTT ATAACTCCCC chr3L:19481305-19481425 1 1.42e-04 . TTGTTTTT GCTTATGGCC chr2R:19268899-19269019 24 2.02e-04 CGTTTTGCTC TTTTTGTT GTGTGCAAAA chr3R:9941069-9941189 57 2.02e-04 CTTTTGGTTC TTTTTGTT CGCTTTTTGT chr3L:10775956-10776076 86 2.02e-04 GTATATAGGT TTTATTTT CTTTTCTTTT chr3L:548526-548646 58 2.02e-04 TTTTTTCTTC TTTATTTT TGGTTTGGTT chrX:13235042-13235162 111 2.02e-04 GTTTAATGCt tttatttt ct chr2L:11053537-11053657 9 2.02e-04 TACGTTTC TTTATTTT TTTATCGCCA chr2R:6518876-6518996 2 2.02e-04 t tttttgtt attCCTACAC chr2R:21496740-21496860 60 2.02e-04 TTTTTTTATT TTTATTTT CATGGACTTG chr2R:21248811-21248931 31 2.02e-04 ACTCAAACTC TTTATTTT TTGGGGGGTG chr3L:3242303-3242423 51 2.02e-04 GCCTCACTTT TTTATTTT GGGGCCGCCG chr3L:22838444-22838564 66 2.02e-04 TATTCGGCTG TTTTTGTT GTTGGCTCTG chr3R:24039299-24039419 45 2.25e-04 CGCTGTCCGC TTTTGTTG TCTGTCGAGT chr3L:16709967-16710087 90 2.25e-04 ACGGATTTGC TTTTGTTG CTTTTCGAAA chr2R:8737969-8738089 111 2.25e-04 CAAAAGCCGC TTTTGTTG AT chr3R:21836008-21836128 49 2.71e-04 CATATGTAGG TTGTGTTT TTGTATCTCG chr2L:8485691-8485811 13 3.21e-04 TTAGTTCTAC TTTAGTTT ATTATTAGAC chr2R:10214275-10214395 4 3.43e-04 TCA TTCTTTTG CCGCCAAGCA chrX:2964793-2964913 17 3.43e-04 CTCGGGCTTA TTCTTTTG TCCGGGGCCG chr3L:8360354-8360474 73 3.93e-04 TCTCTTCACA CTTTTTTT ATCCGTATCT chr3L:18760787-18760907 77 3.93e-04 AGGCAGAGCC TTGTTTTG TGGGTGAGGG chr2R:23797957-23798077 99 3.93e-04 TTTTTATCAA CTTTTTTT ACTGGCTTTT chr3R:22044077-22044197 49 4.43e-04 AGTTACTTCC TTTTTGTG CGCCTCTTCG chr2R:16576569-16576689 20 4.43e-04 CTGTTCAGAA TTTTTGTG ACAATTCACT chrX:5756447-5756567 1 4.43e-04 . TTTATTTG CGTTCCGATT chrX:1574240-1574360 43 4.92e-04 ATTGCATTTT TTCATTTT TTAGCTCCTT chr3L:18771152-18771272 13 6.06e-04 AGGTCACTTA TTTTATTT CGTCGACGCA chr3L:13923940-13924060 42 6.06e-04 CTATATTGGG TTGTTGTT GCTGGGCTTT chr2R:10545090-10545210 4 6.06e-04 ttg ttgttgtt gttATGCCGC chr3R:10539797-10539917 8 6.06e-04 ATTTTTC TTGTTGTT CCTTTGAGCA chr2R:19303920-19304040 52 6.06e-04 ACAGAGTTTA TTATTTTT AGCCCGCTCA chr3R:19569217-19569337 29 6.33e-04 GCTGGTTGCG TTTTTTGT CGCGATCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7304938-7305058 3.3e-05 108_[+2]_4 chr3L:18026106-18026226 3.3e-05 18_[+2]_94 chr2R:11595174-11595294 3.3e-05 55_[+2]_57 chr3R:27129870-27129990 3.3e-05 55_[+2]_57 chr3L:14634827-14634947 3.3e-05 91_[+2]_21 chr3L:13401181-13401301 3.3e-05 40_[+2]_72 chr2R:18662056-18662176 3.3e-05 10_[+2]_102 chrX:3949904-3950024 3.3e-05 91_[+2]_21 chr3L:11295001-11295121 3.3e-05 70_[+2]_42 chr3L:16194520-16194640 3.3e-05 43_[+2]_69 chr2L:16598132-16598252 3.3e-05 55_[+2]_57 chr3L:8657230-8657350 3.3e-05 16_[+2]_96 chr2R:23034019-23034139 3.3e-05 96_[+2]_16 chr2R:17398154-17398274 3.3e-05 92_[+2]_20 chr2L:11175545-11175665 3.3e-05 12_[+2]_100 chr3L:21389723-21389843 3.3e-05 64_[+2]_48 chr3L:5571239-5571359 3.3e-05 106_[+2]_6 chr3L:10787814-10787934 3.3e-05 7_[+2]_105 chr2L:5326209-5326329 3.3e-05 15_[+2]_97 chr3L:19930092-19930212 3.3e-05 39_[+2]_73 chrX:3407538-3407658 3.3e-05 95_[+2]_17 chrX:3390220-3390340 3.3e-05 104_[+2]_8 chr3L:17922853-17922973 3.3e-05 65_[+2]_47 chr3L:10804882-10805002 3.3e-05 96_[+2]_16 chr2R:15483701-15483821 3.3e-05 91_[+2]_21 chrX:9032561-9032681 3.3e-05 21_[+2]_91 chr3L:70734-70854 3.3e-05 47_[+2]_65 chrX:17109759-17109879 3.3e-05 4_[+2]_108 chr2R:10601948-10602068 3.3e-05 98_[+2]_14 chr2L:5229980-5230100 3.3e-05 73_[+2]_39 chr3L:10696758-10696878 3.3e-05 43_[+2]_69 chrX:2274720-2274840 3.3e-05 55_[+2]_57 chr3L:17668354-17668474 3.3e-05 28_[+2]_84 chr2R:9307949-9308069 3.3e-05 44_[+2]_68 chr2L:9457920-9458040 3.3e-05 4_[+2]_108 chr2L:18866733-18866853 3.3e-05 58_[+2]_54 chr3R:9885957-9886077 3.3e-05 23_[+2]_89 chr3L:20544949-20545069 3.3e-05 75_[+2]_37 chr2R:18646795-18646915 3.3e-05 5_[+2]_107 chr3R:30273251-30273371 3.3e-05 65_[+2]_47 chr3R:27272361-27272481 3.3e-05 76_[+2]_36 chr3L:2801541-2801661 3.3e-05 57_[+2]_55 chr3L:17613324-17613444 3.3e-05 3_[+2]_109 chrX:2349659-2349779 3.3e-05 27_[+2]_85 chr2L:1666938-1667058 3.3e-05 63_[+2]_49 chrX:13540116-13540236 3.3e-05 54_[+2]_58 chr2R:11727689-11727809 3.3e-05 55_[+2]_57 chrX:2918701-2918821 3.3e-05 65_[+2]_47 chr3R:21834807-21834927 3.3e-05 54_[+2]_58 chr3L:22840098-22840218 6e-05 27_[+2]_85 chr3L:3239913-3240033 6e-05 3_[+2]_109 chr2R:23432162-23432282 6e-05 50_[+2]_62 chrX:18929281-18929401 6e-05 62_[+2]_50 chrX:11710513-11710633 6e-05 9_[+2]_103 chr3R:21190906-21191026 6e-05 78_[+2]_34 chr3L:15625419-15625539 6e-05 67_[+2]_45 chr3L:7742144-7742264 6e-05 66_[+2]_46 chr3L:7263816-7263936 6e-05 9_[+2]_103 chr3R:18981290-18981410 6e-05 92_[+2]_20 chr3R:15293098-15293218 6e-05 18_[+2]_94 chrX:7194771-7194891 6e-05 52_[+2]_60 chr2L:20084871-20084991 6e-05 56_[+2]_56 chrX:1826732-1826852 6e-05 38_[+2]_74 chr2R:17806794-17806914 6e-05 109_[+2]_3 chr2R:18344949-18345069 6e-05 103_[+2]_9 chrX:15530226-15530346 6e-05 42_[+2]_70 chr2L:247550-247670 6e-05 44_[+2]_68 chr2L:10506139-10506259 6e-05 68_[+2]_44 chr3L:22826345-22826465 6e-05 43_[+2]_69 chr2L:14997418-14997538 8.8e-05 48_[+2]_64 chr3R:9886677-9886797 8.8e-05 [+2]_112 chr2R:22680890-22681010 8.8e-05 60_[+2]_52 chr3L:5639868-5639988 8.8e-05 62_[+2]_50 chr3R:13992326-13992446 8.8e-05 7_[+2]_105 chrX:8889035-8889155 8.8e-05 103_[+2]_9 chr3R:18669353-18669473 8.8e-05 27_[+2]_85 chr2R:6146132-6146252 0.00011 54_[+2]_58 chrX:3964950-3965070 0.00011 96_[+2]_16 chr3L:5845559-5845679 0.00011 42_[+2]_70 chr3R:21837543-21837663 0.00011 79_[+2]_33 chr3L:14003612-14003732 0.00011 35_[+2]_77 chr3L:11119528-11119648 0.00011 48_[+2]_64 chrX:20509954-20510074 0.00011 47_[+2]_65 chr3L:14510158-14510278 0.00014 30_[+2]_82 chr2L:11155707-11155827 0.00014 79_[+2]_33 chr2L:9237347-9237467 0.00014 39_[+2]_73 chr2L:5292222-5292342 0.00014 75_[+2]_37 chr3L:19481305-19481425 0.00014 [+2]_112 chr2R:19268899-19269019 0.0002 23_[+2]_89 chr3R:9941069-9941189 0.0002 56_[+2]_56 chr3L:10775956-10776076 0.0002 85_[+2]_27 chr3L:548526-548646 0.0002 57_[+2]_55 chrX:13235042-13235162 0.0002 110_[+2]_2 chr2L:11053537-11053657 0.0002 8_[+2]_104 chr2R:6518876-6518996 0.0002 1_[+2]_111 chr2R:21496740-21496860 0.0002 59_[+2]_53 chr2R:21248811-21248931 0.0002 30_[+2]_82 chr3L:3242303-3242423 0.0002 50_[+2]_62 chr3L:22838444-22838564 0.0002 65_[+2]_47 chr3R:24039299-24039419 0.00022 44_[+2]_68 chr3L:16709967-16710087 0.00022 89_[+2]_23 chr2R:8737969-8738089 0.00022 110_[+2]_2 chr3R:21836008-21836128 0.00027 48_[+2]_64 chr2L:8485691-8485811 0.00032 12_[+2]_100 chr2R:10214275-10214395 0.00034 3_[+2]_109 chrX:2964793-2964913 0.00034 16_[+2]_96 chr3L:8360354-8360474 0.00039 72_[+2]_40 chr3L:18760787-18760907 0.00039 76_[+2]_36 chr2R:23797957-23798077 0.00039 98_[+2]_14 chr3R:22044077-22044197 0.00044 48_[+2]_64 chr2R:16576569-16576689 0.00044 19_[+2]_93 chrX:5756447-5756567 0.00044 [+2]_112 chrX:1574240-1574360 0.00049 42_[+2]_70 chr3L:18771152-18771272 0.00061 12_[+2]_100 chr3L:13923940-13924060 0.00061 41_[+2]_71 chr2R:10545090-10545210 0.00061 3_[+2]_109 chr3R:10539797-10539917 0.00061 7_[+2]_105 chr2R:19303920-19304040 0.00061 51_[+2]_61 chr3R:19569217-19569337 0.00063 28_[+2]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=119 chrX:7304938-7305058 ( 109) TTTTTTTT 1 chr3L:18026106-18026226 ( 19) TTTTTTTT 1 chr2R:11595174-11595294 ( 56) TTTTTTTT 1 chr3R:27129870-27129990 ( 56) TTTTTTTT 1 chr3L:14634827-14634947 ( 92) TTTTTTTT 1 chr3L:13401181-13401301 ( 41) TTTTTTTT 1 chr2R:18662056-18662176 ( 11) TTTTTTTT 1 chrX:3949904-3950024 ( 92) TTTTTTTT 1 chr3L:11295001-11295121 ( 71) TTTTTTTT 1 chr3L:16194520-16194640 ( 44) TTTTTTTT 1 chr2L:16598132-16598252 ( 56) TTTTTTTT 1 chr3L:8657230-8657350 ( 17) TTTTTTTT 1 chr2R:23034019-23034139 ( 97) TTTTTTTT 1 chr2R:17398154-17398274 ( 93) TTTTTTTT 1 chr2L:11175545-11175665 ( 13) TTTTTTTT 1 chr3L:21389723-21389843 ( 65) TTTTTTTT 1 chr3L:5571239-5571359 ( 107) TTTTTTTT 1 chr3L:10787814-10787934 ( 8) TTTTTTTT 1 chr2L:5326209-5326329 ( 16) TTTTTTTT 1 chr3L:19930092-19930212 ( 40) TTTTTTTT 1 chrX:3407538-3407658 ( 96) TTTTTTTT 1 chrX:3390220-3390340 ( 105) TTTTTTTT 1 chr3L:17922853-17922973 ( 66) TTTTTTTT 1 chr3L:10804882-10805002 ( 97) TTTTTTTT 1 chr2R:15483701-15483821 ( 92) TTTTTTTT 1 chrX:9032561-9032681 ( 22) TTTTTTTT 1 chr3L:70734-70854 ( 48) TTTTTTTT 1 chrX:17109759-17109879 ( 5) TTTTTTTT 1 chr2R:10601948-10602068 ( 99) TTTTTTTT 1 chr2L:5229980-5230100 ( 74) TTTTTTTT 1 chr3L:10696758-10696878 ( 44) TTTTTTTT 1 chrX:2274720-2274840 ( 56) TTTTTTTT 1 chr3L:17668354-17668474 ( 29) TTTTTTTT 1 chr2R:9307949-9308069 ( 45) TTTTTTTT 1 chr2L:9457920-9458040 ( 5) TTTTTTTT 1 chr2L:18866733-18866853 ( 59) TTTTTTTT 1 chr3R:9885957-9886077 ( 24) TTTTTTTT 1 chr3L:20544949-20545069 ( 76) TTTTTTTT 1 chr2R:18646795-18646915 ( 6) TTTTTTTT 1 chr3R:30273251-30273371 ( 66) TTTTTTTT 1 chr3R:27272361-27272481 ( 77) TTTTTTTT 1 chr3L:2801541-2801661 ( 58) TTTTTTTT 1 chr3L:17613324-17613444 ( 4) TTTTTTTT 1 chrX:2349659-2349779 ( 28) TTTTTTTT 1 chr2L:1666938-1667058 ( 64) TTTTTTTT 1 chrX:13540116-13540236 ( 55) TTTTTTTT 1 chr2R:11727689-11727809 ( 56) TTTTTTTT 1 chrX:2918701-2918821 ( 66) TTTTTTTT 1 chr3R:21834807-21834927 ( 55) TTTTTTTT 1 chr3L:22840098-22840218 ( 28) TTTTGTTT 1 chr3L:3239913-3240033 ( 4) TTTTGTTT 1 chr2R:23432162-23432282 ( 51) TTTTGTTT 1 chrX:18929281-18929401 ( 63) TTTTGTTT 1 chrX:11710513-11710633 ( 10) TTTTGTTT 1 chr3R:21190906-21191026 ( 79) TTTTGTTT 1 chr3L:15625419-15625539 ( 68) TTTTGTTT 1 chr3L:7742144-7742264 ( 67) TTTTGTTT 1 chr3L:7263816-7263936 ( 10) TTTTGTTT 1 chr3R:18981290-18981410 ( 93) TTTTGTTT 1 chr3R:15293098-15293218 ( 19) TTTTGTTT 1 chrX:7194771-7194891 ( 53) TTTTGTTT 1 chr2L:20084871-20084991 ( 57) TTTTGTTT 1 chrX:1826732-1826852 ( 39) TTTTGTTT 1 chr2R:17806794-17806914 ( 110) TTTTGTTT 1 chr2R:18344949-18345069 ( 104) TTTTGTTT 1 chrX:15530226-15530346 ( 43) TTTTGTTT 1 chr2L:247550-247670 ( 45) TTTTGTTT 1 chr2L:10506139-10506259 ( 69) TTTTGTTT 1 chr3L:22826345-22826465 ( 44) TTTTGTTT 1 chr2L:14997418-14997538 ( 49) TTTTTTTG 1 chr3R:9886677-9886797 ( 1) TTTTTTTG 1 chr2R:22680890-22681010 ( 61) TTTTTTTG 1 chr3L:5639868-5639988 ( 63) TTTTTTTG 1 chr3R:13992326-13992446 ( 8) TTTTTTTG 1 chrX:8889035-8889155 ( 104) TTTTTTTG 1 chr3R:18669353-18669473 ( 28) TTTTTTTG 1 chr2R:6146132-6146252 ( 55) TTCTTTTT 1 chrX:3964950-3965070 ( 97) TTCTTTTT 1 chr3L:5845559-5845679 ( 43) TTCTTTTT 1 chr3R:21837543-21837663 ( 80) TTCTTTTT 1 chr3L:14003612-14003732 ( 36) TTCTTTTT 1 chr3L:11119528-11119648 ( 49) TTCTTTTT 1 chrX:20509954-20510074 ( 48) TTCTTTTT 1 chr3L:14510158-14510278 ( 31) TTGTTTTT 1 chr2L:11155707-11155827 ( 80) TTGTTTTT 1 chr2L:9237347-9237467 ( 40) TTGTTTTT 1 chr2L:5292222-5292342 ( 76) TTGTTTTT 1 chr3L:19481305-19481425 ( 1) TTGTTTTT 1 chr2R:19268899-19269019 ( 24) TTTTTGTT 1 chr3R:9941069-9941189 ( 57) TTTTTGTT 1 chr3L:10775956-10776076 ( 86) TTTATTTT 1 chr3L:548526-548646 ( 58) TTTATTTT 1 chrX:13235042-13235162 ( 111) TTTATTTT 1 chr2L:11053537-11053657 ( 9) TTTATTTT 1 chr2R:6518876-6518996 ( 2) TTTTTGTT 1 chr2R:21496740-21496860 ( 60) TTTATTTT 1 chr2R:21248811-21248931 ( 31) TTTATTTT 1 chr3L:3242303-3242423 ( 51) TTTATTTT 1 chr3L:22838444-22838564 ( 66) TTTTTGTT 1 chr3R:24039299-24039419 ( 45) TTTTGTTG 1 chr3L:16709967-16710087 ( 90) TTTTGTTG 1 chr2R:8737969-8738089 ( 111) TTTTGTTG 1 chr3R:21836008-21836128 ( 49) TTGTGTTT 1 chr2L:8485691-8485811 ( 13) TTTAGTTT 1 chr2R:10214275-10214395 ( 4) TTCTTTTG 1 chrX:2964793-2964913 ( 17) TTCTTTTG 1 chr3L:8360354-8360474 ( 73) CTTTTTTT 1 chr3L:18760787-18760907 ( 77) TTGTTTTG 1 chr2R:23797957-23798077 ( 99) CTTTTTTT 1 chr3R:22044077-22044197 ( 49) TTTTTGTG 1 chr2R:16576569-16576689 ( 20) TTTTTGTG 1 chrX:5756447-5756567 ( 1) TTTATTTG 1 chrX:1574240-1574360 ( 43) TTCATTTT 1 chr3L:18771152-18771272 ( 13) TTTTATTT 1 chr3L:13923940-13924060 ( 42) TTGTTGTT 1 chr2R:10545090-10545210 ( 4) TTGTTGTT 1 chr3R:10539797-10539917 ( 8) TTGTTGTT 1 chr2R:19303920-19304040 ( 52) TTATTTTT 1 chr3R:19569217-19569337 ( 29) TTTTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59032 E= 6.9e-082 -1354 -374 -1354 184 -1354 -1354 -1354 186 -499 -142 -147 158 -167 -1354 -1354 173 -499 -1354 -14 150 -1354 -1354 -162 175 -1354 -1354 -479 185 -1354 -1354 -79 165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 119 E= 6.9e-082 0.000000 0.016807 0.000000 0.983193 0.000000 0.000000 0.000000 1.000000 0.008403 0.084034 0.084034 0.823529 0.084034 0.000000 0.000000 0.915966 0.008403 0.000000 0.210084 0.781513 0.000000 0.000000 0.075630 0.924370 0.000000 0.000000 0.008403 0.991597 0.000000 0.000000 0.134454 0.865546 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTTT[TG]TTT -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CCHCCNCC MEME-3 width = 8 sites = 31 llr = 284 E-value = 2.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::3::2:: pos.-specific C aa4aa3aa probability G ::1::3:: matrix T ::3::3:: bits 2.2 ** ** ** 1.9 ** ** ** 1.7 ** ** ** 1.5 ** ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ** ** (13.2 bits) 0.9 ** ** ** 0.6 ** ** ** 0.4 ** ** ** 0.2 ***** ** 0.0 -------- Multilevel CCCCCCCC consensus A G sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6343737-6343857 54 6.57e-06 CTGTCGCCCC CCCCCCCC CCCTACACCA chrX:8661404-8661524 102 6.57e-06 CTACCTCGCC CCCCCCCC CTACTCTTCG chr3L:19481305-19481425 58 6.57e-06 GTTCCACTCC CCCCCCCC CCAAAAAAAA chr3R:9886677-9886797 44 1.33e-05 CTGCCTGTTG CCCCCGCC AGATTTTGAT chr2R:6518876-6518996 37 1.33e-05 ATTCTCGTTT CCCCCGCC ACAGACCCCC chr3L:8688681-8688801 83 1.33e-05 TGCAATCTGG CCCCCGCC CATCAAACAT chr2R:23034019-23034139 81 2.14e-05 CTCTTTCTTA CCCCCTCC AACTCTCCTT chr3L:5639868-5639988 21 2.14e-05 GGCCTGCATC CCCCCTCC ACCCCCACCA chr3L:3247231-3247351 65 2.14e-05 CTCTCTCTAC CCCCCTCC CCCACGCAAA chrX:13396070-13396190 110 2.14e-05 GGGCTTCACG CCCCCTCC CCT chr2L:7993238-7993358 38 3.72e-05 CATGCCACGC CCACCCCC CACCAACGCC chr3L:18760787-18760907 18 3.72e-05 TCTGCTATGC CCTCCCCC CTACCCGCTC chr2R:19179183-19179303 64 3.72e-05 CCTCTCGCTC CCACCCCC GCGCTTTCTC chr3R:23496029-23496149 103 3.72e-05 ACCGCAAAAG CCTCCCCC TGTCACTCAC chr3R:21604661-21604781 39 3.72e-05 TTGCCGCTCA CCACCCCC TGCCTTCCCT chr3L:15544736-15544856 24 4.50e-05 GAACACGATG CCCCCACC TGATCCGCAG chr3L:22823341-22823461 44 4.50e-05 CCCCCAATAC CCCCCACC AACACTGCTC chrX:3412900-3413020 23 4.50e-05 CGGTGGCGTT CCCCCACC TCAACCCGCT chrX:20244328-20244448 28 6.13e-05 ACAGCACCAC CCACCGCC CACCTTTGCC chr3R:21921521-21921641 67 6.13e-05 TGTCCCGCTC CCACCGCC ACTCTCCACA chrX:13235042-13235162 45 6.13e-05 ACGACACACC CCTCCGCC CTCCTaaaaa chr2L:14531505-14531625 6 6.13e-05 GCACA CCTCCGCC ACCGCTACTC chr2L:4982240-4982360 104 6.13e-05 CTAATTCGCC CCACCGCC CATCCACCC chr3L:18771152-18771272 103 8.06e-05 CCCCTTCTGC CCTCCTCC CCACACACCT chr2R:21496740-21496860 98 8.06e-05 CTCTCTTTCT CCTCCTCC ATCATTCGGT chr3L:18897570-18897690 54 8.06e-05 TGGCAAGCGG CCTCCTCC GCGTTTCCCT chr3R:17701671-17701791 83 8.06e-05 GGGAAACACA CCTCCTCC CACACCTCTG chrX:9032561-9032681 51 9.94e-05 CTGCGGACAC CCACCACC TAAGGCGCTC chrX:8060594-8060714 104 9.94e-05 CGCTTTTGTT CCACCACC GAAAAAAAT chr3L:19930092-19930212 93 1.06e-04 CCTCTCTGCC CCGCCCCC TAGACAGAGA chr2L:6087839-6087959 56 1.06e-04 ATCCGAATCC CCGCCCCC CAAAAGGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6343737-6343857 6.6e-06 53_[+3]_59 chrX:8661404-8661524 6.6e-06 101_[+3]_11 chr3L:19481305-19481425 6.6e-06 57_[+3]_55 chr3R:9886677-9886797 1.3e-05 43_[+3]_69 chr2R:6518876-6518996 1.3e-05 36_[+3]_76 chr3L:8688681-8688801 1.3e-05 82_[+3]_30 chr2R:23034019-23034139 2.1e-05 80_[+3]_32 chr3L:5639868-5639988 2.1e-05 20_[+3]_92 chr3L:3247231-3247351 2.1e-05 64_[+3]_48 chrX:13396070-13396190 2.1e-05 109_[+3]_3 chr2L:7993238-7993358 3.7e-05 37_[+3]_75 chr3L:18760787-18760907 3.7e-05 17_[+3]_95 chr2R:19179183-19179303 3.7e-05 63_[+3]_49 chr3R:23496029-23496149 3.7e-05 102_[+3]_10 chr3R:21604661-21604781 3.7e-05 38_[+3]_74 chr3L:15544736-15544856 4.5e-05 23_[+3]_89 chr3L:22823341-22823461 4.5e-05 43_[+3]_69 chrX:3412900-3413020 4.5e-05 22_[+3]_90 chrX:20244328-20244448 6.1e-05 27_[+3]_85 chr3R:21921521-21921641 6.1e-05 66_[+3]_46 chrX:13235042-13235162 6.1e-05 44_[+3]_68 chr2L:14531505-14531625 6.1e-05 5_[+3]_107 chr2L:4982240-4982360 6.1e-05 103_[+3]_9 chr3L:18771152-18771272 8.1e-05 102_[+3]_10 chr2R:21496740-21496860 8.1e-05 97_[+3]_15 chr3L:18897570-18897690 8.1e-05 53_[+3]_59 chr3R:17701671-17701791 8.1e-05 82_[+3]_30 chrX:9032561-9032681 9.9e-05 50_[+3]_62 chrX:8060594-8060714 9.9e-05 103_[+3]_9 chr3L:19930092-19930212 0.00011 92_[+3]_20 chr2L:6087839-6087959 0.00011 55_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCHCCNCC width=8 seqs=31 chrX:6343737-6343857 ( 54) CCCCCCCC 1 chrX:8661404-8661524 ( 102) CCCCCCCC 1 chr3L:19481305-19481425 ( 58) CCCCCCCC 1 chr3R:9886677-9886797 ( 44) CCCCCGCC 1 chr2R:6518876-6518996 ( 37) CCCCCGCC 1 chr3L:8688681-8688801 ( 83) CCCCCGCC 1 chr2R:23034019-23034139 ( 81) CCCCCTCC 1 chr3L:5639868-5639988 ( 21) CCCCCTCC 1 chr3L:3247231-3247351 ( 65) CCCCCTCC 1 chrX:13396070-13396190 ( 110) CCCCCTCC 1 chr2L:7993238-7993358 ( 38) CCACCCCC 1 chr3L:18760787-18760907 ( 18) CCTCCCCC 1 chr2R:19179183-19179303 ( 64) CCACCCCC 1 chr3R:23496029-23496149 ( 103) CCTCCCCC 1 chr3R:21604661-21604781 ( 39) CCACCCCC 1 chr3L:15544736-15544856 ( 24) CCCCCACC 1 chr3L:22823341-22823461 ( 44) CCCCCACC 1 chrX:3412900-3413020 ( 23) CCCCCACC 1 chrX:20244328-20244448 ( 28) CCACCGCC 1 chr3R:21921521-21921641 ( 67) CCACCGCC 1 chrX:13235042-13235162 ( 45) CCTCCGCC 1 chr2L:14531505-14531625 ( 6) CCTCCGCC 1 chr2L:4982240-4982360 ( 104) CCACCGCC 1 chr3L:18771152-18771272 ( 103) CCTCCTCC 1 chr2R:21496740-21496860 ( 98) CCTCCTCC 1 chr3L:18897570-18897690 ( 54) CCTCCTCC 1 chr3R:17701671-17701791 ( 83) CCTCCTCC 1 chrX:9032561-9032681 ( 51) CCACCACC 1 chrX:8060594-8060714 ( 104) CCACCACC 1 chr3L:19930092-19930212 ( 93) CCGCCCCC 1 chr2L:6087839-6087959 ( 56) CCGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 2.2e-006 -1160 215 -1160 -1160 -1160 215 -1160 -1160 -5 90 -185 -9 -1160 215 -1160 -1160 -1160 215 -1160 -1160 -73 52 15 -9 -1160 215 -1160 -1160 -1160 215 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 2.2e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.258065 0.419355 0.064516 0.258065 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.161290 0.322581 0.258065 0.258065 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHCCNCC MEME-3 regular expression -------------------------------------------------------------------------------- CC[CAT]CC[CGT]CC -------------------------------------------------------------------------------- Time 20.26 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAARMGA MEME-4 width = 8 sites = 84 llr = 610 E-value = 4.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6aa95638 pos.-specific C :::114:2 probability G 4:::4:7: matrix T :::::::: bits 2.2 1.9 ** 1.7 ** 1.5 *** Relative 1.3 *** * Entropy 1.1 **** *** (10.5 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAGA consensus G GCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2805319-2805439 40 2.24e-05 AACTGCTCGG AAAAAAGA ACAAAACGGC chr3L:14456089-14456209 91 2.24e-05 aataatacaa aaaaaaGA GCGCGCTCGA chrX:12734477-12734597 23 2.24e-05 ACGGGGCGAG AAAAAAGA ATAAAGAGGC chrX:1271295-1271415 32 2.24e-05 aatgtacgcc aaaaaaga acgcacaaga chrX:11601346-11601466 103 2.24e-05 AAGACCAGCA AAAAAAGA AGAAGAAAAA chr2R:10874153-10874273 58 2.24e-05 ATGGGTACAC AAAAAAGA TGCAGAGCCA chr3R:7310713-7310833 62 2.24e-05 AAAAGCGGGC AAAAAaga gagagtgcga chr2R:22545492-22545612 61 2.24e-05 CCAAAAAAAA AAAAAAGA TTCACCCGCT chrX:5756447-5756567 70 2.24e-05 aaaaaaaaac aaaaaaga aaaaCTCAGA chr2R:11595174-11595294 14 4.19e-05 TTGAGCGGGT AAAAGAGA GGGGGACAAT chr3L:18771152-18771272 57 6.09e-05 AAAAAGAAAG AAAAACGA GTCGAAAAAG chr3L:13497771-13497891 15 6.09e-05 AAAAAAAAAT AAAAACGA TGAGGTGGAA chrX:8682018-8682138 33 6.09e-05 AAAAACACCC AAAAACGA AATGCAAATG chrX:13396070-13396190 6 6.09e-05 AGCTA AAAAACGA GAAATAAAAA chrX:2295604-2295724 50 6.09e-05 aacaaaaagg aaaaacga gagactggaa chr3L:4408406-4408526 52 6.09e-05 GTAGGGGTCC AAAAACGA ATGGGAAGAA chrX:3720401-3720521 87 9.68e-05 aaagcaaacg aaaagcga agcGTGTGCG chr2R:19268899-19269019 92 9.68e-05 CGCGAGTCGC AAAAGCGA ATCGAAAGCT chr3L:18190999-18191119 8 9.68e-05 AATGGCA AAAAGCGA AGCAGCTGCG chrX:20244328-20244448 96 9.68e-05 AAAAAACGAA AAAAGCGA AGTTTTGCAA chr3R:30100749-30100869 110 9.68e-05 TTGAAAGAGG GAAAAAGA ATA chrX:12580155-12580275 25 1.14e-04 gacggaggga gaaagaga tagagagcga chr2L:598008-598128 55 1.14e-04 CGATTCGTCG GAAAGAGA CAGAGGACAG chrX:6343737-6343857 95 1.14e-04 GAAACAAAAA GAAAGAGA AAGAACGAAA chr2L:9493990-9494110 60 1.14e-04 GAAGAGAAGA GAAAGAGA GTGGTGCGGG chr2R:18304890-18305010 29 1.14e-04 CGTGGCGGGG GAAAGAGA TGGCTTACCC chr3R:30454510-30454630 91 1.14e-04 CGAAAAGAGC GAAAGAGA GGTCAATTCG chr2R:21248811-21248931 96 1.14e-04 GAGGAGGAGA GAAAGAGA CGGGCAGCCA chr3L:3247231-3247351 84 1.14e-04 CCACGCAAAG GAAAGAGA CGGAGCGATT chrX:4444978-4445098 90 1.14e-04 TGAAACCAGG GAAAGAGA GGGGTAGCTA chrX:3407538-3407658 4 1.14e-04 GAA GAAAGAGA CAAGAATATC chr3R:21652915-21653035 7 1.14e-04 AGACGC GAAAGAGA GCCAACGGCT chr2R:16721238-16721358 12 1.14e-04 CGGAGAGAGT GAAAGAGA GGGCGCGAGA chrX:8894820-8894940 39 1.14e-04 GAGATTTGGT GAAAGAGA CGGGCAGCGA chr3L:5845559-5845679 107 1.30e-04 TTGACGCCGC GAAAACGA CTCAAA chrX:13235042-13235162 31 1.30e-04 AAACTAAACT GAAAACGA CACACCCCTC chr2L:7493626-7493746 105 1.44e-04 TAAGTAAGCC GAAAGCGA GCCATAAA chr2L:14534036-14534156 85 1.70e-04 caaaaaaaaa aaaaaaaa CGCATAACGA chr2R:19617937-19618057 24 1.70e-04 AAGTGCTACC AAAAAAAA TAATAAAAAA chr3R:10539797-10539917 76 1.70e-04 GCTCCTGCaa aaaaaaaa aaaaaaaaaa chr3R:14451639-14451759 96 1.70e-04 AATGACTCCG AAAAAAAA CATGTGTTGA chr3R:20765473-20765593 25 1.70e-04 GCaaaaagca aaaaaaaa gcagaaaaat chr3R:17825593-17825713 10 1.70e-04 ACGAGCAAA AAAAAAAA ACTACAAACA chr3L:69480-69600 61 1.93e-04 AGGAAATGTG AAAAGAAA AAAACGTAAA chr3R:17706577-17706697 96 2.14e-04 taaaattcat aaaaacaa atcaaGACAG chr3R:18981290-18981410 25 2.14e-04 GCCGGTTGAC AAAAACAA GCATAACGAT chr3L:3050303-3050423 71 2.56e-04 CGAAAAAAAA GAAAAAAA CAAATCCGTT chr3R:19569217-19569337 90 2.56e-04 TACTAGCCAT GAAAAAAA TTCAAATTCC chr2R:21496740-21496860 23 2.56e-04 CTTTAGCAAC AAAAGCAA GAGCAAATGA chr3L:10787814-10787934 61 2.56e-04 TTTTTTACAC AAAAGCAA GCGGTGGCGT chr2R:9028305-9028425 45 2.56e-04 CGGAGAGGGG GAAAAAAA TGATGAAAAC chr2L:5292222-5292342 28 2.56e-04 TTGCAAGAAC AAAAGCAA AGAACGTTGA chr2L:9692554-9692674 56 2.56e-04 AAAGACGCGA AAAAGCAA AAAATTAAAA chr3R:19310474-19310594 71 2.75e-04 gaaaggaacg gaaagaaa cggGGCAAGA chr3L:8702109-8702229 2 3.13e-04 C GAAAACAA GGGCCAAAAT chr3R:20915864-20915984 102 3.13e-04 GAAATATATA AAAAAAGC CGACATATGT chr3R:18448175-18448295 111 3.13e-04 AAACAACAAT AAAAAAGC TT chrX:1577258-1577378 51 3.46e-04 CCAaaaaaca gaaagcaa aaccaaaacc chr3R:15293098-15293218 71 3.81e-04 AACAAAAACG AAAAACGC AAAACAAGTA chr2R:11607609-11607729 52 3.81e-04 TCGTGCAGAG AAAAACGC CAGAGTCAGA chrX:3390220-3390340 23 3.81e-04 CGGGCCAAGC AAAACAGA GACAACGAAA chrX:1595826-1595946 54 3.81e-04 AAACTGCCAT AAAACAGA GCCCGAACAA chrX:8889035-8889155 58 3.81e-04 cgaggtatga aaaacaga agaagaagaa chr3R:17680391-17680511 61 3.81e-04 AAAGCACAAT AAAAACGC CGGTAAAGGT chrX:1566055-1566175 84 4.11e-04 aaaaaaaaac gaaaaaGC TGACAAGGCA chr2R:12979784-12979904 46 4.41e-04 GTTGCTAAAT GAAAGAGC AGTAAAAAAA chr2R:19303920-19304040 39 4.72e-04 AAGCCAACGA GAAACAGA GTTTATTATT chr2R:12635689-12635809 22 5.03e-04 TCTTCGATCG GAAAGCGC AACCATCAGC chrX:1947342-1947462 30 5.03e-04 caGGCACGCG GAAAGCGC GCACAACGAA chrX:10728217-10728337 72 5.33e-04 GCAAATATGA GAAACCGA AATCGAGAGG chr3R:22044077-22044197 17 5.33e-04 TTACAAACCG AAACGAGA TGTTTGTTAT chr2R:11096424-11096544 79 5.33e-04 CCAGCTGTTC AAACGAGA AGGCACAAGT chr2R:10545090-10545210 65 5.49e-04 CAAAAAAGTA AAACACGA ACAAAAAAAG chr2R:18308081-18308201 1 6.01e-04 . aaaaaaaC AGGGAGGCAG chrX:17109759-17109879 78 6.01e-04 GCAAAATTTC AAACGCGA GTGGAACGTG chr2R:19179183-19179303 10 6.34e-04 AGAGAGCGC GAACGAGA GAGGGGATTA chr3R:9885957-9886077 68 6.34e-04 CAACTTTCGG GAACGAGA GCCGTTGATC chrX:17857094-17857214 52 6.88e-04 GATTATGCAT AAAACAAA CAACAAGTAG chr3L:15544736-15544856 14 6.88e-04 CCCACCTCCG GAACACGA TGCCCCCACC chrX:20509954-20510074 14 6.88e-04 taccgcacac aaaaacac actcacacac chr3L:2636157-2636277 21 6.88e-04 acacTAGCGC AAAAACAC GCTCCTGTAC chr2R:6518876-6518996 75 7.35e-04 AGCTGGGAGC GAAAAAAC TCATTTAGGC chrX:9032561-9032681 109 7.70e-04 AAAATATCAT AAAACCAA TCAA chrX:3412900-3413020 48 8.40e-04 GCTCTGAGGC aaacaaaa aaaaaaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2805319-2805439 2.2e-05 39_[+4]_73 chr3L:14456089-14456209 2.2e-05 90_[+4]_22 chrX:12734477-12734597 2.2e-05 22_[+4]_90 chrX:1271295-1271415 2.2e-05 31_[+4]_81 chrX:11601346-11601466 2.2e-05 102_[+4]_10 chr2R:10874153-10874273 2.2e-05 57_[+4]_55 chr3R:7310713-7310833 2.2e-05 61_[+4]_51 chr2R:22545492-22545612 2.2e-05 60_[+4]_52 chrX:5756447-5756567 2.2e-05 69_[+4]_43 chr2R:11595174-11595294 4.2e-05 13_[+4]_99 chr3L:18771152-18771272 6.1e-05 56_[+4]_56 chr3L:13497771-13497891 6.1e-05 14_[+4]_98 chrX:8682018-8682138 6.1e-05 32_[+4]_80 chrX:13396070-13396190 6.1e-05 5_[+4]_107 chrX:2295604-2295724 6.1e-05 49_[+4]_63 chr3L:4408406-4408526 6.1e-05 51_[+4]_61 chrX:3720401-3720521 9.7e-05 86_[+4]_26 chr2R:19268899-19269019 9.7e-05 91_[+4]_21 chr3L:18190999-18191119 9.7e-05 7_[+4]_105 chrX:20244328-20244448 9.7e-05 95_[+4]_17 chr3R:30100749-30100869 9.7e-05 109_[+4]_3 chrX:12580155-12580275 0.00011 24_[+4]_88 chr2L:598008-598128 0.00011 54_[+4]_58 chrX:6343737-6343857 0.00011 94_[+4]_18 chr2L:9493990-9494110 0.00011 59_[+4]_53 chr2R:18304890-18305010 0.00011 28_[+4]_84 chr3R:30454510-30454630 0.00011 90_[+4]_22 chr2R:21248811-21248931 0.00011 95_[+4]_17 chr3L:3247231-3247351 0.00011 83_[+4]_29 chrX:4444978-4445098 0.00011 89_[+4]_23 chrX:3407538-3407658 0.00011 3_[+4]_109 chr3R:21652915-21653035 0.00011 6_[+4]_106 chr2R:16721238-16721358 0.00011 11_[+4]_101 chrX:8894820-8894940 0.00011 38_[+4]_74 chr3L:5845559-5845679 0.00013 106_[+4]_6 chrX:13235042-13235162 0.00013 30_[+4]_82 chr2L:7493626-7493746 0.00014 104_[+4]_8 chr2L:14534036-14534156 0.00017 84_[+4]_28 chr2R:19617937-19618057 0.00017 23_[+4]_89 chr3R:10539797-10539917 0.00017 75_[+4]_37 chr3R:14451639-14451759 0.00017 95_[+4]_17 chr3R:20765473-20765593 0.00017 24_[+4]_88 chr3R:17825593-17825713 0.00017 9_[+4]_103 chr3L:69480-69600 0.00019 60_[+4]_52 chr3R:17706577-17706697 0.00021 95_[+4]_17 chr3R:18981290-18981410 0.00021 24_[+4]_88 chr3L:3050303-3050423 0.00026 70_[+4]_42 chr3R:19569217-19569337 0.00026 89_[+4]_23 chr2R:21496740-21496860 0.00026 22_[+4]_90 chr3L:10787814-10787934 0.00026 60_[+4]_52 chr2R:9028305-9028425 0.00026 44_[+4]_68 chr2L:5292222-5292342 0.00026 27_[+4]_85 chr2L:9692554-9692674 0.00026 55_[+4]_57 chr3R:19310474-19310594 0.00028 70_[+4]_42 chr3L:8702109-8702229 0.00031 1_[+4]_111 chr3R:20915864-20915984 0.00031 101_[+4]_11 chr3R:18448175-18448295 0.00031 110_[+4]_2 chrX:1577258-1577378 0.00035 50_[+4]_62 chr3R:15293098-15293218 0.00038 70_[+4]_42 chr2R:11607609-11607729 0.00038 51_[+4]_61 chrX:3390220-3390340 0.00038 22_[+4]_90 chrX:1595826-1595946 0.00038 53_[+4]_59 chrX:8889035-8889155 0.00038 57_[+4]_55 chr3R:17680391-17680511 0.00038 60_[+4]_52 chrX:1566055-1566175 0.00041 83_[+4]_29 chr2R:12979784-12979904 0.00044 45_[+4]_67 chr2R:19303920-19304040 0.00047 38_[+4]_74 chr2R:12635689-12635809 0.0005 21_[+4]_91 chrX:1947342-1947462 0.0005 29_[+4]_83 chrX:10728217-10728337 0.00053 71_[+4]_41 chr3R:22044077-22044197 0.00053 16_[+4]_96 chr2R:11096424-11096544 0.00053 78_[+4]_34 chr2R:10545090-10545210 0.00055 64_[+4]_48 chr2R:18308081-18308201 0.0006 [+4]_112 chrX:17109759-17109879 0.0006 77_[+4]_35 chr2R:19179183-19179303 0.00063 9_[+4]_103 chr3R:9885957-9886077 0.00063 67_[+4]_45 chrX:17857094-17857214 0.00069 51_[+4]_61 chr3L:15544736-15544856 0.00069 13_[+4]_99 chrX:20509954-20510074 0.00069 13_[+4]_99 chr3L:2636157-2636277 0.00069 20_[+4]_92 chr2R:6518876-6518996 0.00073 74_[+4]_38 chrX:9032561-9032681 0.00077 108_[+4]_4 chrX:3412900-3413020 0.00084 47_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAARMGA width=8 seqs=84 chr3L:2805319-2805439 ( 40) AAAAAAGA 1 chr3L:14456089-14456209 ( 91) AAAAAAGA 1 chrX:12734477-12734597 ( 23) AAAAAAGA 1 chrX:1271295-1271415 ( 32) AAAAAAGA 1 chrX:11601346-11601466 ( 103) AAAAAAGA 1 chr2R:10874153-10874273 ( 58) AAAAAAGA 1 chr3R:7310713-7310833 ( 62) AAAAAAGA 1 chr2R:22545492-22545612 ( 61) AAAAAAGA 1 chrX:5756447-5756567 ( 70) AAAAAAGA 1 chr2R:11595174-11595294 ( 14) AAAAGAGA 1 chr3L:18771152-18771272 ( 57) AAAAACGA 1 chr3L:13497771-13497891 ( 15) AAAAACGA 1 chrX:8682018-8682138 ( 33) AAAAACGA 1 chrX:13396070-13396190 ( 6) AAAAACGA 1 chrX:2295604-2295724 ( 50) AAAAACGA 1 chr3L:4408406-4408526 ( 52) AAAAACGA 1 chrX:3720401-3720521 ( 87) AAAAGCGA 1 chr2R:19268899-19269019 ( 92) AAAAGCGA 1 chr3L:18190999-18191119 ( 8) AAAAGCGA 1 chrX:20244328-20244448 ( 96) AAAAGCGA 1 chr3R:30100749-30100869 ( 110) GAAAAAGA 1 chrX:12580155-12580275 ( 25) GAAAGAGA 1 chr2L:598008-598128 ( 55) GAAAGAGA 1 chrX:6343737-6343857 ( 95) GAAAGAGA 1 chr2L:9493990-9494110 ( 60) GAAAGAGA 1 chr2R:18304890-18305010 ( 29) GAAAGAGA 1 chr3R:30454510-30454630 ( 91) GAAAGAGA 1 chr2R:21248811-21248931 ( 96) GAAAGAGA 1 chr3L:3247231-3247351 ( 84) GAAAGAGA 1 chrX:4444978-4445098 ( 90) GAAAGAGA 1 chrX:3407538-3407658 ( 4) GAAAGAGA 1 chr3R:21652915-21653035 ( 7) GAAAGAGA 1 chr2R:16721238-16721358 ( 12) GAAAGAGA 1 chrX:8894820-8894940 ( 39) GAAAGAGA 1 chr3L:5845559-5845679 ( 107) GAAAACGA 1 chrX:13235042-13235162 ( 31) GAAAACGA 1 chr2L:7493626-7493746 ( 105) GAAAGCGA 1 chr2L:14534036-14534156 ( 85) AAAAAAAA 1 chr2R:19617937-19618057 ( 24) AAAAAAAA 1 chr3R:10539797-10539917 ( 76) AAAAAAAA 1 chr3R:14451639-14451759 ( 96) AAAAAAAA 1 chr3R:20765473-20765593 ( 25) AAAAAAAA 1 chr3R:17825593-17825713 ( 10) AAAAAAAA 1 chr3L:69480-69600 ( 61) AAAAGAAA 1 chr3R:17706577-17706697 ( 96) AAAAACAA 1 chr3R:18981290-18981410 ( 25) AAAAACAA 1 chr3L:3050303-3050423 ( 71) GAAAAAAA 1 chr3R:19569217-19569337 ( 90) GAAAAAAA 1 chr2R:21496740-21496860 ( 23) AAAAGCAA 1 chr3L:10787814-10787934 ( 61) AAAAGCAA 1 chr2R:9028305-9028425 ( 45) GAAAAAAA 1 chr2L:5292222-5292342 ( 28) AAAAGCAA 1 chr2L:9692554-9692674 ( 56) AAAAGCAA 1 chr3R:19310474-19310594 ( 71) GAAAGAAA 1 chr3L:8702109-8702229 ( 2) GAAAACAA 1 chr3R:20915864-20915984 ( 102) AAAAAAGC 1 chr3R:18448175-18448295 ( 111) AAAAAAGC 1 chrX:1577258-1577378 ( 51) GAAAGCAA 1 chr3R:15293098-15293218 ( 71) AAAAACGC 1 chr2R:11607609-11607729 ( 52) AAAAACGC 1 chrX:3390220-3390340 ( 23) AAAACAGA 1 chrX:1595826-1595946 ( 54) AAAACAGA 1 chrX:8889035-8889155 ( 58) AAAACAGA 1 chr3R:17680391-17680511 ( 61) AAAAACGC 1 chrX:1566055-1566175 ( 84) GAAAAAGC 1 chr2R:12979784-12979904 ( 46) GAAAGAGC 1 chr2R:19303920-19304040 ( 39) GAAACAGA 1 chr2R:12635689-12635809 ( 22) GAAAGCGC 1 chrX:1947342-1947462 ( 30) GAAAGCGC 1 chrX:10728217-10728337 ( 72) GAAACCGA 1 chr3R:22044077-22044197 ( 17) AAACGAGA 1 chr2R:11096424-11096544 ( 79) AAACGAGA 1 chr2R:10545090-10545210 ( 65) AAACACGA 1 chr2R:18308081-18308201 ( 1) AAAAAAAC 1 chrX:17109759-17109879 ( 78) AAACGCGA 1 chr2R:19179183-19179303 ( 10) GAACGAGA 1 chr3R:9885957-9886077 ( 68) GAACGAGA 1 chrX:17857094-17857214 ( 52) AAAACAAA 1 chr3L:15544736-15544856 ( 14) GAACACGA 1 chrX:20509954-20510074 ( 14) AAAAACAC 1 chr3L:2636157-2636277 ( 21) AAAAACAC 1 chr2R:6518876-6518996 ( 75) GAAAAAAC 1 chrX:9032561-9032681 ( 109) AAAACCAA 1 chrX:3412900-3413020 ( 48) AAACAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 4.0e-004 118 -1304 76 -1304 190 -1304 -1304 -1304 190 -1304 -1304 -1304 176 -124 -1304 -1304 94 -143 80 -1304 118 80 -1304 -1304 21 -1304 157 -1304 166 -54 -1304 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 4.0e-004 0.607143 0.000000 0.392857 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.904762 0.095238 0.000000 0.000000 0.511905 0.083333 0.404762 0.000000 0.607143 0.392857 0.000000 0.000000 0.309524 0.000000 0.690476 0.000000 0.845238 0.154762 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAARMGA MEME-4 regular expression -------------------------------------------------------------------------------- [AG]AAA[AG][AC][GA]A -------------------------------------------------------------------------------- Time 26.11 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGYG MEME-5 width = 8 sites = 42 llr = 353 E-value = 2.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 2:::::31 probability G :a:9:a19 matrix T 8:a:8:6: bits 2.2 * 1.9 * * 1.7 *** * * 1.5 *** * * Relative 1.3 **** * * Entropy 1.1 ****** * (12.1 bits) 0.9 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17857094-17857214 9 1.66e-05 GTCGCAtg tgtgtgtg tgcgtttgtg chrX:11710513-11710633 45 1.66e-05 tgtgtgttta tgtgtgtg gggagggggt chr3L:11295001-11295121 42 1.66e-05 TGTGTATGTG TGTGTGTG CTGCAGCAGG chr2R:22680890-22681010 36 1.66e-05 CATTCGTGCA TGTGTGTG TATTATTCCC chr2L:11175545-11175665 63 1.66e-05 TGTGAGTGTC TGTGTGTG GGTCTAACAG chr3R:15293098-15293218 99 1.66e-05 AATTTCAAGG TGTGTGTG ACTAAGCCGT chrX:3751187-3751307 83 1.66e-05 ATCAGAAAGG TGTGTGTG GTTGTTTGGT chr3L:16709967-16710087 12 1.66e-05 TGTGTGTACG TGTGTGTG GAGAACGCAG chr2L:5287972-5288092 75 1.66e-05 GGCgtgtttg tgtgtgtg tgcgtgagtg chr3L:17922853-17922973 110 1.66e-05 tgtgtgtgcg tgtgtgtg tgt chrX:1574240-1574360 98 1.66e-05 cgtctgtgcc tgtgtgtg tggccgtgtA chr2L:247550-247670 78 1.66e-05 tatctgcatc tgtgtgtg tttgttggcc chr3R:30273251-30273371 21 1.66e-05 tgtgtgtgtg tgtgtgtg tATTTTTAGC chrX:18926923-18927043 59 1.66e-05 TTTCTCGATT Tgtgtgtg ttggtggtga chr3L:13401181-13401301 54 3.01e-05 TTTTTATTTT TGTGTGCG ACTGTGGTTA chrX:1611394-1611514 81 3.01e-05 CCGCCGACTT TGTGTGCG TATGTACCGC chr3R:17680391-17680511 103 3.01e-05 AAAGCGCCCA TGTGTGCG TGAGTGTGAC chr3R:18448175-18448295 66 3.01e-05 TTTGTGTGTA TGTGTGCG TTTTCGTAGG chrX:11601346-11601466 3 4.37e-05 AT CGTGTGTG CTGCAAAAAA chr2L:5292222-5292342 101 4.37e-05 CCCACACTCG CGTGTGTG CTAGTGTGCG chrX:3720401-3720521 97 5.48e-05 aaaagcgaag cGTGTGCG AGCGAGAGGC chr2R:11365044-11365164 52 5.48e-05 GTCGCTGCTG CGTGTGCG AGTGGGGGCG chr2L:9692554-9692674 112 5.48e-05 CTGCCGCCGA CGTGTGCG T chr2R:11595174-11595294 31 7.09e-05 AGGGGGACAA TGTGAGTG CTTCTGACTC chr3R:7310713-7310833 95 7.09e-05 aaagagaggg tgtgagtg tgagagCAGG chr3L:14510158-14510278 66 8.48e-05 ATTTCATTTT TGTGTGGG GGAGGGATAG chr3L:22838444-22838564 90 8.48e-05 TCTGTTATCT TGTGTGGG GACTGCATAT chr3R:9886677-9886797 27 1.01e-04 GCGGCAGAGT TGTGTGTC TGCCTGTTGC chr3L:14003612-14003732 10 1.01e-04 TTTGCATAC TGTGTGTC GCCATATTTG chrX:1947342-1947462 109 1.14e-04 AACACACATT TGTGAGCG TGAT chr2L:11954951-11955071 23 1.14e-04 AATATGCAAA TGTGAGCG GGACGAGGCG chr3R:14654658-14654778 24 1.28e-04 CTTTGTGGTT TGTGGGTG TGCCGCCGCT chr2R:17806794-17806914 51 1.41e-04 ATGGTTTTGG TGTGTGCC GCAAACTGGA chr2R:12635689-12635809 98 1.85e-04 CTCGTGTATA TGTATGTG TGTTGTTGGT chr2L:13642440-13642560 15 1.85e-04 TCGATGTGGA TGTGGGCG AGTTGGAGGT chr3R:21834807-21834927 91 1.85e-04 AGCTACAATA TGTATGTG CCAGCTTGGA chr2R:6146132-6146252 93 1.96e-04 GAAAGGGCGG CGTGTGGG GAACCGACTC chr2R:12979784-12979904 111 2.23e-04 TTTCAATTGC CGTGTGTC CA chr2L:9671298-9671418 100 2.66e-04 CCCAAGCCAA CGTGAGCG TCATATTAAT chr3L:4408406-4408526 106 2.66e-04 GCCAGTTGTT TGTCTGTG GCAATGA chr2L:6087839-6087959 7 2.82e-04 CGCatc tgtgtctg tatctgtatc chr2R:23797957-23798077 54 3.29e-04 ATCTTGGCTT TGGGTGCG AGCGGGATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17857094-17857214 1.7e-05 8_[+5]_104 chrX:11710513-11710633 1.7e-05 44_[+5]_68 chr3L:11295001-11295121 1.7e-05 41_[+5]_71 chr2R:22680890-22681010 1.7e-05 35_[+5]_77 chr2L:11175545-11175665 1.7e-05 62_[+5]_50 chr3R:15293098-15293218 1.7e-05 98_[+5]_14 chrX:3751187-3751307 1.7e-05 82_[+5]_30 chr3L:16709967-16710087 1.7e-05 11_[+5]_101 chr2L:5287972-5288092 1.7e-05 74_[+5]_38 chr3L:17922853-17922973 1.7e-05 109_[+5]_3 chrX:1574240-1574360 1.7e-05 97_[+5]_15 chr2L:247550-247670 1.7e-05 77_[+5]_35 chr3R:30273251-30273371 1.7e-05 20_[+5]_92 chrX:18926923-18927043 1.7e-05 58_[+5]_54 chr3L:13401181-13401301 3e-05 53_[+5]_59 chrX:1611394-1611514 3e-05 80_[+5]_32 chr3R:17680391-17680511 3e-05 102_[+5]_10 chr3R:18448175-18448295 3e-05 65_[+5]_47 chrX:11601346-11601466 4.4e-05 2_[+5]_110 chr2L:5292222-5292342 4.4e-05 100_[+5]_12 chrX:3720401-3720521 5.5e-05 96_[+5]_16 chr2R:11365044-11365164 5.5e-05 51_[+5]_61 chr2L:9692554-9692674 5.5e-05 111_[+5]_1 chr2R:11595174-11595294 7.1e-05 30_[+5]_82 chr3R:7310713-7310833 7.1e-05 94_[+5]_18 chr3L:14510158-14510278 8.5e-05 65_[+5]_47 chr3L:22838444-22838564 8.5e-05 89_[+5]_23 chr3R:9886677-9886797 0.0001 26_[+5]_86 chr3L:14003612-14003732 0.0001 9_[+5]_103 chrX:1947342-1947462 0.00011 108_[+5]_4 chr2L:11954951-11955071 0.00011 22_[+5]_90 chr3R:14654658-14654778 0.00013 23_[+5]_89 chr2R:17806794-17806914 0.00014 50_[+5]_62 chr2R:12635689-12635809 0.00018 97_[+5]_15 chr2L:13642440-13642560 0.00018 14_[+5]_98 chr3R:21834807-21834927 0.00018 90_[+5]_22 chr2R:6146132-6146252 0.0002 92_[+5]_20 chr2R:12979784-12979904 0.00022 110_[+5]_2 chr2L:9671298-9671418 0.00027 99_[+5]_13 chr3L:4408406-4408526 0.00027 105_[+5]_7 chr2L:6087839-6087959 0.00028 6_[+5]_106 chr2R:23797957-23798077 0.00033 53_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGYG width=8 seqs=42 chrX:17857094-17857214 ( 9) TGTGTGTG 1 chrX:11710513-11710633 ( 45) TGTGTGTG 1 chr3L:11295001-11295121 ( 42) TGTGTGTG 1 chr2R:22680890-22681010 ( 36) TGTGTGTG 1 chr2L:11175545-11175665 ( 63) TGTGTGTG 1 chr3R:15293098-15293218 ( 99) TGTGTGTG 1 chrX:3751187-3751307 ( 83) TGTGTGTG 1 chr3L:16709967-16710087 ( 12) TGTGTGTG 1 chr2L:5287972-5288092 ( 75) TGTGTGTG 1 chr3L:17922853-17922973 ( 110) TGTGTGTG 1 chrX:1574240-1574360 ( 98) TGTGTGTG 1 chr2L:247550-247670 ( 78) TGTGTGTG 1 chr3R:30273251-30273371 ( 21) TGTGTGTG 1 chrX:18926923-18927043 ( 59) TGTGTGTG 1 chr3L:13401181-13401301 ( 54) TGTGTGCG 1 chrX:1611394-1611514 ( 81) TGTGTGCG 1 chr3R:17680391-17680511 ( 103) TGTGTGCG 1 chr3R:18448175-18448295 ( 66) TGTGTGCG 1 chrX:11601346-11601466 ( 3) CGTGTGTG 1 chr2L:5292222-5292342 ( 101) CGTGTGTG 1 chrX:3720401-3720521 ( 97) CGTGTGCG 1 chr2R:11365044-11365164 ( 52) CGTGTGCG 1 chr2L:9692554-9692674 ( 112) CGTGTGCG 1 chr2R:11595174-11595294 ( 31) TGTGAGTG 1 chr3R:7310713-7310833 ( 95) TGTGAGTG 1 chr3L:14510158-14510278 ( 66) TGTGTGGG 1 chr3L:22838444-22838564 ( 90) TGTGTGGG 1 chr3R:9886677-9886797 ( 27) TGTGTGTC 1 chr3L:14003612-14003732 ( 10) TGTGTGTC 1 chrX:1947342-1947462 ( 109) TGTGAGCG 1 chr2L:11954951-11955071 ( 23) TGTGAGCG 1 chr3R:14654658-14654778 ( 24) TGTGGGTG 1 chr2R:17806794-17806914 ( 51) TGTGTGCC 1 chr2R:12635689-12635809 ( 98) TGTATGTG 1 chr2L:13642440-13642560 ( 15) TGTGGGCG 1 chr3R:21834807-21834927 ( 91) TGTATGTG 1 chr2R:6146132-6146252 ( 93) CGTGTGGG 1 chr2R:12979784-12979904 ( 111) CGTGTGTC 1 chr2L:9671298-9671418 ( 100) CGTGAGCG 1 chr3L:4408406-4408526 ( 106) TGTCTGTG 1 chr2L:6087839-6087959 ( 7) TGTGTCTG 1 chr2R:23797957-23798077 ( 54) TGGGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 2.8e-002 -1204 -24 -1204 156 -1204 -1204 211 -1204 -1204 -1204 -328 183 -249 -324 200 -1204 -117 -1204 -228 160 -1204 -324 207 -1204 -1204 46 -170 117 -1204 -124 196 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 2.8e-002 0.000000 0.190476 0.000000 0.809524 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.023810 0.976190 0.047619 0.023810 0.928571 0.000000 0.119048 0.000000 0.047619 0.833333 0.000000 0.023810 0.976190 0.000000 0.000000 0.309524 0.071429 0.619048 0.000000 0.095238 0.904762 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGYG MEME-5 regular expression -------------------------------------------------------------------------------- TGTGTG[TC]G -------------------------------------------------------------------------------- Time 31.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9692554-9692674 1.77e-04 42_[+4(2.24e-05)]_61_[+5(5.48e-05)]_\ 1 chr3R:13039171-13039291 7.76e-01 120 chr3R:21834807-21834927 3.06e-02 54_[+2(3.27e-05)]_58 chrX:3412900-3413020 5.69e-04 22_[+3(4.50e-05)]_21_[+1(2.58e-05)]_\ [+1(2.58e-05)]_53 chrX:13966767-13966887 9.39e-03 120 chrX:1566688-1566808 2.75e-02 36_[+1(2.58e-05)]_76 chr3L:4408406-4408526 7.79e-03 51_[+4(6.09e-05)]_61 chrX:18926923-18927043 7.69e-02 58_[+5(1.66e-05)]_54 chrX:2918701-2918821 5.02e-02 24_[+2(6.03e-05)]_32_[+2(3.27e-05)]_\ 48 chr2R:11727689-11727809 5.19e-03 50_[+2(3.27e-05)]_[+2(8.79e-05)]_54 chrX:13540116-13540236 2.56e-02 50_[+2(3.27e-05)]_[+2(8.79e-05)]_54 chr2L:4982240-4982360 2.64e-01 103_[+3(6.13e-05)]_9 chr2R:23797957-23798077 1.92e-01 120 chrX:8060594-8060714 1.13e-03 103_[+3(9.94e-05)]_9 chr3L:19481305-19481425 8.37e-07 55_[+3(6.57e-06)]_4_[+1(2.58e-05)]_\ [+1(2.58e-05)]_37 chr2L:488820-488940 7.87e-01 120 chr3L:2636157-2636277 8.03e-02 120 chr2L:11954951-11955071 1.39e-03 61_[+1(2.58e-05)]_51 chrX:5756447-5756567 8.71e-05 54_[+1(2.58e-05)]_7_[+4(2.24e-05)]_\ 43 chr3R:18448175-18448295 1.97e-05 65_[+5(3.01e-05)]_22_[+1(4.76e-05)]_\ 17 chr2L:1666938-1667058 8.02e-02 61_[+2(3.27e-05)]_[+2(8.79e-05)]_43 chrX:2349659-2349779 1.99e-02 23_[+2(3.27e-05)]_89 chr2R:8737969-8738089 1.63e-03 76_[+1(2.58e-05)]_36 chr3R:11457383-11457503 2.26e-02 87_[+1(2.58e-05)]_25 chr3L:17613324-17613444 5.59e-02 [+2(3.27e-05)]_3_[+2(6.03e-05)]_101 chr3R:21836008-21836128 3.21e-03 32_[+1(9.18e-05)]_80 chr3L:2801541-2801661 1.31e-01 57_[+2(3.27e-05)]_28_[+2(6.03e-05)]_\ 19 chr3R:21093516-21093636 6.28e-03 62_[+4(2.24e-05)]_50 chr3L:22826345-22826465 2.25e-04 43_[+2(6.03e-05)]_69 chr3R:27272361-27272481 1.65e-01 73_[+2(3.27e-05)]_3_[+2(6.03e-05)]_\ 28 chr2R:16576569-16576689 2.09e-01 120 chr3R:17701671-17701791 2.29e-04 54_[+4(2.24e-05)]_20_[+3(8.06e-05)]_\ 30 chrX:2964793-2964913 2.18e-01 120 chr3R:30273251-30273371 2.38e-03 10_[+5(1.66e-05)]_[+5(1.66e-05)]_39_\ [+2(3.27e-05)]_47 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5_[+5(3.01e-05)]_22_[+5(7.09e-05)]_29 chr3R:4130446-4130566 2.86e-01 120 chr3L:13497771-13497891 2.78e-03 3_[+1(2.58e-05)]_3_[+4(6.09e-05)]_\ 98 chr3L:14634827-14634947 6.55e-02 91_[+2(3.27e-05)]_21 chr3L:18190999-18191119 1.23e-02 7_[+4(9.68e-05)]_51_[+1(2.58e-05)]_\ 46 chr3R:21190906-21191026 1.70e-04 78_[+2(6.03e-05)]_19_[+4(2.24e-05)]_\ 7 chr2R:24631059-24631179 7.08e-01 120 chrX:12580155-12580275 3.73e-02 1_[+4(9.68e-05)]_111 chr3L:3304194-3304314 1.46e-02 120 chr3R:27129870-27129990 2.61e-02 54_[+2(3.27e-05)]_58 chrX:11710513-11710633 5.43e-03 4_[+2(6.03e-05)]_2_[+2(6.03e-05)]_\ 22_[+5(1.66e-05)]_16_[+5(3.01e-05)]_44 chrX:18929281-18929401 2.50e-01 62_[+2(6.03e-05)]_50 chr3R:17706577-17706697 2.27e-02 67_[+1(4.76e-05)]_45 chr3L:14510158-14510278 5.35e-03 65_[+5(8.48e-05)]_47 chr2L:8989094-8989214 7.42e-01 120 chr3L:2805319-2805439 1.44e-03 15_[+1(9.18e-05)]_16_[+4(2.24e-05)]_\ 73 chr2R:11595174-11595294 1.75e-05 13_[+4(4.19e-05)]_9_[+5(7.09e-05)]_\ 17_[+2(3.27e-05)]_57 chr2L:7993238-7993358 2.84e-02 37_[+3(3.72e-05)]_75 chrX:3964950-3965070 2.28e-01 120 chr2L:17450274-17450394 5.88e-01 120 chr3L:8702109-8702229 1.14e-01 120 chr2R:6146132-6146252 4.70e-02 120 chr2R:23432162-23432282 2.89e-01 50_[+2(6.03e-05)]_62 chr2R:12979784-12979904 8.72e-04 24_[+1(4.76e-05)]_24_[+1(2.58e-05)]_\ 56 chrX:20159075-20159195 8.97e-01 120 chr3L:18026106-18026226 1.87e-01 17_[+2(3.27e-05)]_95 chr3L:18771152-18771272 8.09e-05 45_[+4(2.24e-05)]_3_[+4(6.09e-05)]_\ 38_[+3(8.06e-05)]_10 chr3L:8360354-8360474 1.07e-01 120 chr3L:3239913-3240033 1.62e-01 3_[+2(6.03e-05)]_109 chr3R:9941069-9941189 3.33e-02 120 chr2L:8485691-8485811 5.66e-01 120 chr2R:19268899-19269019 1.10e-02 91_[+4(9.68e-05)]_21 chr3L:15637782-15637902 3.93e-01 120 chrX:12669812-12669932 6.76e-01 120 chr3R:30526919-30527039 8.83e-01 120 chrX:17857094-17857214 1.46e-03 6_[+5(1.66e-05)]_106 chr3L:22840098-22840218 8.39e-02 27_[+2(6.03e-05)]_85 chrX:10728217-10728337 2.49e-01 120 chrX:3720401-3720521 5.78e-04 55_[+1(2.58e-05)]_23_[+4(9.68e-05)]_\ 2_[+5(5.48e-05)]_16 chrX:7304938-7305058 8.41e-02 107_[+2(3.27e-05)]_5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************