******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ind.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:22108493-22108613 1.0000 120 chr3R:22121334-22121454 1.0000 120 chr2R:22661279-22661399 1.0000 120 chr3L:15034419-15034539 1.0000 120 chr3R:26242626-26242746 1.0000 120 chr3R:24817207-24817327 1.0000 120 chrX:10601764-10601884 1.0000 120 chr3L:2572125-2572245 1.0000 120 chr3R:29089772-29089892 1.0000 120 chr2L:2729998-2730118 1.0000 120 chr3R:26105957-26106077 1.0000 120 chr3L:1139568-1139688 1.0000 120 chr2R:17533768-17533888 1.0000 120 chr3L:11293442-11293562 1.0000 120 chr3R:28676989-28677109 1.0000 120 chr2R:18451102-18451222 1.0000 120 chr2R:20319559-20319679 1.0000 120 chr2R:14275533-14275653 1.0000 120 chrX:6663267-6663387 1.0000 120 chr3R:22494665-22494785 1.0000 120 chrX:15532204-15532324 1.0000 120 chr2R:18994139-18994259 1.0000 120 chr2L:3435232-3435352 1.0000 120 chr2L:4861636-4861756 1.0000 120 chr2R:17469322-17469442 1.0000 120 chr3L:16202767-16202887 1.0000 120 chr2R:24629552-24629672 1.0000 120 chr3L:7510845-7510965 1.0000 120 chr4:1053938-1054058 1.0000 120 chr2R:21514487-21514607 1.0000 120 chr3L:16146644-16146764 1.0000 120 chr3L:94251-94371 1.0000 120 chr3R:8920223-8920343 1.0000 120 chr3L:1880857-1880977 1.0000 120 chrX:10387789-10387909 1.0000 120 chr3L:630189-630309 1.0000 120 chr3L:5554568-5554688 1.0000 120 chr3R:10411867-10411987 1.0000 120 chrX:10600665-10600785 1.0000 120 chr3L:14205092-14205212 1.0000 120 chr2R:21018405-21018525 1.0000 120 chr3L:3382017-3382137 1.0000 120 chr2R:17698923-17699043 1.0000 120 chr3L:9614088-9614208 1.0000 120 chr3L:3380570-3380690 1.0000 120 chrX:5737270-5737390 1.0000 120 chr3R:28599587-28599707 1.0000 120 chr2L:19058982-19059102 1.0000 120 chr3R:26172162-26172282 1.0000 120 chrX:10573681-10573801 1.0000 120 chr2L:7635296-7635416 1.0000 120 chr2L:19490269-19490389 1.0000 120 chr2L:937102-937222 1.0000 120 chrX:10067652-10067772 1.0000 120 chr3L:3078621-3078741 1.0000 120 chr3R:29626075-29626195 1.0000 120 chr3L:8440906-8441026 1.0000 120 chr3R:26235157-26235277 1.0000 120 chr3L:4603530-4603650 1.0000 120 chr2L:1158254-1158374 1.0000 120 chr2R:10160311-10160431 1.0000 120 chr3L:15977685-15977805 1.0000 120 chr3R:21887616-21887736 1.0000 120 chrX:9352866-9352986 1.0000 120 chrX:9892982-9893102 1.0000 120 chr2R:14161290-14161410 1.0000 120 chr2R:14645104-14645224 1.0000 120 chr2L:9493391-9493511 1.0000 120 chr3R:19627965-19628085 1.0000 120 chr2L:15248752-15248872 1.0000 120 chr3L:9838659-9838779 1.0000 120 chr2L:5771296-5771416 1.0000 120 chr3L:12336401-12336521 1.0000 120 chr3R:7892846-7892966 1.0000 120 chrX:618700-618820 1.0000 120 chrX:1880318-1880438 1.0000 120 chr2R:21017461-21017581 1.0000 120 chr3R:20008809-20008929 1.0000 120 chr2L:18328885-18329005 1.0000 120 chr2R:20906673-20906793 1.0000 120 chr2R:8914042-8914162 1.0000 120 chr3L:10206343-10206463 1.0000 120 chr2L:15629935-15630055 1.0000 120 chr3R:11872849-11872969 1.0000 120 chr3L:8951208-8951328 1.0000 120 chrX:4262801-4262921 1.0000 120 chrX:10718047-10718167 1.0000 120 chrX:20507856-20507976 1.0000 120 chrX:9119378-9119498 1.0000 120 chr3R:26937551-26937671 1.0000 120 chr2L:1486088-1486208 1.0000 120 chr3R:23028645-23028765 1.0000 120 chr3L:8024985-8025105 1.0000 120 chr3L:6752862-6752982 1.0000 120 chr2R:21503238-21503358 1.0000 120 chr2L:11091233-11091353 1.0000 120 chr3L:11074585-11074705 1.0000 120 chr2L:8528509-8528629 1.0000 120 chr3R:26436699-26436819 1.0000 120 chr2L:14562402-14562522 1.0000 120 chr2R:7077008-7077128 1.0000 120 chr2L:10698123-10698243 1.0000 120 chr3R:21837175-21837295 1.0000 120 chr2L:9763242-9763362 1.0000 120 chr2L:10468544-10468664 1.0000 120 chr2R:18433799-18433919 1.0000 120 chr3R:14755219-14755339 1.0000 120 chr3R:18215434-18215554 1.0000 120 chr3R:10648914-10649034 1.0000 120 chr2R:13261840-13261960 1.0000 120 chr2L:21658529-21658649 1.0000 120 chr3L:20771140-20771260 1.0000 120 chr2R:18883705-18883825 1.0000 120 chr2R:20994794-20994914 1.0000 120 chr3R:25004889-25005009 1.0000 120 chr3R:26654710-26654830 1.0000 120 chr3L:10745732-10745852 1.0000 120 chrX:12466576-12466696 1.0000 120 chr2L:5043928-5044048 1.0000 120 chrX:17176666-17176786 1.0000 120 chr3L:8399215-8399335 1.0000 120 chr3R:15472758-15472878 1.0000 120 chrX:9652166-9652286 1.0000 120 chr3R:21993050-21993170 1.0000 120 chr3R:18670617-18670737 1.0000 120 chrX:11451157-11451277 1.0000 120 chrX:5285928-5286048 1.0000 120 chr2R:12605700-12605820 1.0000 120 chr3R:15351117-15351237 1.0000 120 chrX:6375773-6375893 1.0000 120 chr3R:5686492-5686612 1.0000 120 chr3R:20588561-20588681 1.0000 120 chr3L:15532776-15532896 1.0000 120 chr2L:16544708-16544828 1.0000 120 chr3L:14335971-14336091 1.0000 120 chr3R:13999664-13999784 1.0000 120 chr3L:16385962-16386082 1.0000 120 chr3L:8395713-8395833 1.0000 120 chr2L:5520096-5520216 1.0000 120 chrX:20631323-20631443 1.0000 120 chrX:2136490-2136610 1.0000 120 chr2R:11435233-11435353 1.0000 120 chrX:17330383-17330503 1.0000 120 chr2L:20881437-20881557 1.0000 120 chr3R:10100694-10100814 1.0000 120 chrX:21322830-21322950 1.0000 120 chr2L:1629732-1629852 1.0000 120 chr3L:14031890-14032010 1.0000 120 chr2R:7254340-7254460 1.0000 120 chr2R:21060544-21060664 1.0000 120 chr2R:24657153-24657273 1.0000 120 chr2L:19517454-19517574 1.0000 120 chrX:12454510-12454630 1.0000 120 chr3L:8629062-8629182 1.0000 120 chr3L:1335594-1335714 1.0000 120 chr3L:18791591-18791711 1.0000 120 chr2L:16647860-16647980 1.0000 120 chr2L:20715138-20715258 1.0000 120 chr3R:22664387-22664507 1.0000 120 chr3L:2372052-2372172 1.0000 120 chrX:8125264-8125384 1.0000 120 chr2L:21163514-21163634 1.0000 120 chr3L:9508852-9508972 1.0000 120 chrX:9193757-9193877 1.0000 120 chrX:12595763-12595883 1.0000 120 chrX:15297082-15297202 1.0000 120 chr2R:17478600-17478720 1.0000 120 chr2R:12337696-12337816 1.0000 120 chr3L:4607855-4607975 1.0000 120 chrX:11570437-11570557 1.0000 120 chr3R:15250635-15250755 1.0000 120 chr2R:12652583-12652703 1.0000 120 chr3R:18399268-18399388 1.0000 120 chr3R:27677237-27677357 1.0000 120 chr2L:522867-522987 1.0000 120 chr2R:15478019-15478139 1.0000 120 chr3R:10161326-10161446 1.0000 120 chrX:18869636-18869756 1.0000 120 chrX:4010974-4011094 1.0000 120 chrX:16782267-16782387 1.0000 120 chr3R:15837232-15837352 1.0000 120 chr2R:13054978-13055098 1.0000 120 chr2R:12468403-12468523 1.0000 120 chr2L:19159398-19159518 1.0000 120 chr2R:23176751-23176871 1.0000 120 chr3L:18784693-18784813 1.0000 120 chr3R:8207066-8207186 1.0000 120 chr3R:27937907-27938027 1.0000 120 chr3L:11993167-11993287 1.0000 120 chr3R:29997769-29997889 1.0000 120 chrX:14602698-14602818 1.0000 120 chr3R:8984734-8984854 1.0000 120 chrX:10488068-10488188 1.0000 120 chr2L:4847306-4847426 1.0000 120 chr2L:7395908-7396028 1.0000 120 chr2R:23574923-23575043 1.0000 120 chr2R:7052443-7052563 1.0000 120 chr3R:24917903-24918023 1.0000 120 chr2L:10565840-10565960 1.0000 120 chr3R:10564376-10564496 1.0000 120 chr3R:8960438-8960558 1.0000 120 chr2L:5543168-5543288 1.0000 120 chr3L:2411712-2411832 1.0000 120 chrX:15384110-15384230 1.0000 120 chr2R:14909973-14910093 1.0000 120 chr2R:13926267-13926387 1.0000 120 chr3L:11149023-11149143 1.0000 120 chr2R:11275720-11275840 1.0000 120 chrX:6267542-6267662 1.0000 120 chr3R:9053891-9054011 1.0000 120 chrX:1944331-1944451 1.0000 120 chrX:7001010-7001130 1.0000 120 chrX:13644177-13644297 1.0000 120 chrX:20394188-20394308 1.0000 120 chr2R:11095279-11095399 1.0000 120 chr3L:9847549-9847669 1.0000 120 chr2L:20097287-20097407 1.0000 120 chr2R:13429168-13429288 1.0000 120 chrX:19667049-19667169 1.0000 120 chr3R:23356128-23356248 1.0000 120 chr3L:8072802-8072922 1.0000 120 chr3R:30532092-30532212 1.0000 120 chrX:7299487-7299607 1.0000 120 chr3L:557438-557558 1.0000 120 chr2L:13366216-13366336 1.0000 120 chr2L:6698519-6698639 1.0000 120 chr3R:26821247-26821367 1.0000 120 chrX:9349350-9349470 1.0000 120 chr3R:30797428-30797548 1.0000 120 chr3R:5998306-5998426 1.0000 120 chr3R:12369574-12369694 1.0000 120 chr2R:18829729-18829849 1.0000 120 chr3L:3389814-3389934 1.0000 120 chrX:8892695-8892815 1.0000 120 chr3L:7614402-7614522 1.0000 120 chr3L:6189709-6189829 1.0000 120 chr3R:15145614-15145734 1.0000 120 chr3L:13450253-13450373 1.0000 120 chr3L:1029729-1029849 1.0000 120 chrX:12470677-12470797 1.0000 120 chr3L:4239597-4239717 1.0000 120 chr3R:25880413-25880533 1.0000 120 chr3L:12504159-12504279 1.0000 120 chr3R:21151525-21151645 1.0000 120 chr2R:11738658-11738778 1.0000 120 chr3R:9370596-9370716 1.0000 120 chrX:15599818-15599938 1.0000 120 chr2L:1150674-1150794 1.0000 120 chr3R:29040658-29040778 1.0000 120 chr2L:16352659-16352779 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ind/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ind.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.338 C 0.169 G 0.166 T 0.328 Background letter frequencies (from file dataset with add-one prior applied): A 0.338 C 0.169 G 0.166 T 0.328 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCACTSGC MEME-1 width = 8 sites = 13 llr = 138 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C 2a:a:52a probability G 8:3:158: matrix T ::::9::: bits 2.6 * * * 2.3 * * * 2.1 ** * * 1.8 ** * ** Relative 1.6 ** * *** Entropy 1.3 ** ***** (15.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGGC consensus G CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1880857-1880977 104 2.45e-06 TTCTCTCAGT GCACTGGC ATAAGCGCT chrX:5737270-5737390 102 3.65e-06 GGTGACTACG GCGCTGGC GGGGGTTGGG chr3L:557438-557558 11 6.14e-06 GCCTACACTA GCACTCGC ACTCACATTT chrX:14602698-14602818 26 6.14e-06 GACACAGGCT GCACTCGC TATGCGTGCC chr3L:8399215-8399335 53 6.14e-06 ATTTCGGTCA GCACTCGC TTTGCTACTT chr2L:5043928-5044048 50 6.14e-06 TTCAAAATTT GCACTCGC ACTGTCTGCA chr3R:21887616-21887736 24 6.14e-06 GCTACAGTAG GCACTCGC TATAGAACTC chr2R:12337696-12337816 83 9.86e-06 TTCACAGTCT GCACTGCC ACCTATTTAG chr2L:21163514-21163634 86 9.86e-06 CGCATTGGCA GCACTGCC CACAATTCAG chrX:2136490-2136610 109 9.86e-06 TGTTTTAACT GCACTGCC TACG chr3L:11293442-11293562 96 1.98e-05 ACCGGTTGCG CCGCTGGC TTTGACGAAC chr3R:18399268-18399388 12 2.30e-05 GGCTCTCTCG GCGCGGGC ATGCCAACTA chr2R:23176751-23176871 37 2.55e-05 GAAGTGCCTG CCGCTCGC TGCCTCAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1880857-1880977 2.4e-06 103_[+1]_9 chrX:5737270-5737390 3.6e-06 101_[+1]_11 chr3L:557438-557558 6.1e-06 10_[+1]_102 chrX:14602698-14602818 6.1e-06 25_[+1]_87 chr3L:8399215-8399335 6.1e-06 52_[+1]_60 chr2L:5043928-5044048 6.1e-06 49_[+1]_63 chr3R:21887616-21887736 6.1e-06 23_[+1]_89 chr2R:12337696-12337816 9.9e-06 82_[+1]_30 chr2L:21163514-21163634 9.9e-06 85_[+1]_27 chrX:2136490-2136610 9.9e-06 108_[+1]_4 chr3L:11293442-11293562 2e-05 95_[+1]_17 chr3R:18399268-18399388 2.3e-05 11_[+1]_101 chr2R:23176751-23176871 2.5e-05 36_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTSGC width=8 seqs=13 chr3L:1880857-1880977 ( 104) GCACTGGC 1 chrX:5737270-5737390 ( 102) GCGCTGGC 1 chr3L:557438-557558 ( 11) GCACTCGC 1 chrX:14602698-14602818 ( 26) GCACTCGC 1 chr3L:8399215-8399335 ( 53) GCACTCGC 1 chr2L:5043928-5044048 ( 50) GCACTCGC 1 chr3R:21887616-21887736 ( 24) GCACTCGC 1 chr2R:12337696-12337816 ( 83) GCACTGCC 1 chr2L:21163514-21163634 ( 86) GCACTGCC 1 chrX:2136490-2136610 ( 109) GCACTGCC 1 chr3L:11293442-11293562 ( 96) CCGCTGGC 1 chr3R:18399268-18399388 ( 12) GCGCGGGC 1 chr2R:23176751-23176871 ( 37) CCGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 1.4e+001 -1035 -13 235 -1035 -1035 257 -1035 -1035 104 -1035 89 -1035 -1035 257 -1035 -1035 -1035 -1035 -111 149 -1035 145 170 -1035 -1035 45 221 -1035 -1035 257 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.4e+001 0.000000 0.153846 0.846154 0.000000 0.000000 1.000000 0.000000 0.000000 0.692308 0.000000 0.307692 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.461538 0.538462 0.000000 0.000000 0.230769 0.769231 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTSGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[AG]CT[GC][GC]C -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGGGCTG MEME-2 width = 8 sites = 4 llr = 52 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::::a:: probability G ::aaa::a matrix T ::::::a: bits 2.6 * **** * 2.3 * **** * 2.1 * **** * 1.8 * **** * Relative 1.6 ******** Entropy 1.3 ******** (18.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGGGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10161326-10161446 2 2.40e-06 C CAGGGCTG CCAGCTACAC chr3L:16385962-16386082 8 2.40e-06 TTGCCAC CAGGGCTG TCAGGTTGCA chr3R:18215434-18215554 26 2.40e-06 AACGTAAGAC CAGGGCTG CAACTACGAA chr2R:8914042-8914162 74 2.40e-06 GCTCGGTGTT CAGGGCTG TCAGGTGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10161326-10161446 2.4e-06 1_[+2]_111 chr3L:16385962-16386082 2.4e-06 7_[+2]_105 chr3R:18215434-18215554 2.4e-06 25_[+2]_87 chr2R:8914042-8914162 2.4e-06 73_[+2]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGGGCTG width=8 seqs=4 chr3R:10161326-10161446 ( 2) CAGGGCTG 1 chr3L:16385962-16386082 ( 8) CAGGGCTG 1 chr3R:18215434-18215554 ( 26) CAGGGCTG 1 chr2R:8914042-8914162 ( 74) CAGGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 1.6e+003 -865 257 -865 -865 156 -865 -865 -865 -865 -865 259 -865 -865 -865 259 -865 -865 -865 259 -865 -865 257 -865 -865 -865 -865 -865 161 -865 -865 259 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGGCTG MEME-2 regular expression -------------------------------------------------------------------------------- CAGGGCTG -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TKGGCGCG MEME-3 width = 8 sites = 4 llr = 49 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:a: probability G 35aa:a:a matrix T 85:::::: bits 2.6 ****** 2.3 ****** 2.1 ****** 1.8 ****** Relative 1.6 ****** Entropy 1.3 ****** (17.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGGCGCG consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23176751-23176871 13 1.18e-06 CCTATGGAGA TGGGCGCG TGACACGAAG chr3L:94251-94371 55 1.18e-06 CATTTTAATG TGGGCGCG CATTTTGTAG chrX:16782267-16782387 95 4.11e-06 AAGCAATTTG TTGGCGCG TCGCGTGTTG chr2L:2729998-2730118 22 5.29e-06 GCGCGATACA GTGGCGCG TGTATCTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23176751-23176871 1.2e-06 12_[+3]_100 chr3L:94251-94371 1.2e-06 54_[+3]_58 chrX:16782267-16782387 4.1e-06 94_[+3]_18 chr2L:2729998-2730118 5.3e-06 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKGGCGCG width=8 seqs=4 chr2R:23176751-23176871 ( 13) TGGGCGCG 1 chr3L:94251-94371 ( 55) TGGGCGCG 1 chrX:16782267-16782387 ( 95) TTGGCGCG 1 chr2L:2729998-2730118 ( 22) GTGGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 2.0e+004 -865 -865 59 119 -865 -865 159 61 -865 -865 259 -865 -865 -865 259 -865 -865 257 -865 -865 -865 -865 259 -865 -865 257 -865 -865 -865 -865 259 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.0e+004 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGCGCG MEME-3 regular expression -------------------------------------------------------------------------------- [TG][GT]GGCGCG -------------------------------------------------------------------------------- Time 19.99 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAYGGCG MEME-4 width = 8 sites = 11 llr = 116 E-value = 5.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 7:71:::: pos.-specific C 3::3::a: probability G :a32aa:a matrix T :::5:::: bits 2.6 * **** 2.3 * **** 2.1 * **** 1.8 * **** Relative 1.6 * **** Entropy 1.3 * **** (15.2 bits) 1.0 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel AGATGGCG consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20507856-20507976 65 7.29e-06 AGAGGAGGTG AGATGGCG AGAAAGGTTT chr2R:20906673-20906793 80 7.29e-06 TACCAACGGT AGATGGCG CCAGTGCAAC chr2L:5771296-5771416 88 7.29e-06 CCTTTACGGT AGATGGCG TTATTCAAAG chr3L:16202767-16202887 76 7.29e-06 CAAGTTCTTA AGATGGCG TTTTCAAAGA chrX:8892695-8892815 96 9.74e-06 ATAATGCTAT CGACGGCG TCTCAGAAAC chr3L:557438-557558 34 9.74e-06 CATTTGACGA CGACGGCG CCAAACTTCT chr2R:22661279-22661399 4 9.74e-06 TAT CGACGGCG TCAATGTGGT chr3L:14031890-14032010 59 1.22e-05 TAACACATTG AGAGGGCG CTCTTATAAG chr3R:10100694-10100814 56 1.69e-05 ATTGGCCAGA AGGTGGCG CTCGATGCGA chr3R:5998306-5998426 29 2.00e-05 TCGGGGAAAA AGGGGGCG TCATTGCAAA chr3R:29997769-29997889 35 3.16e-05 TTTAAGATTA AGGAGGCG TATCAAGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20507856-20507976 7.3e-06 64_[+4]_48 chr2R:20906673-20906793 7.3e-06 79_[+4]_33 chr2L:5771296-5771416 7.3e-06 87_[+4]_25 chr3L:16202767-16202887 7.3e-06 75_[+4]_37 chrX:8892695-8892815 9.7e-06 95_[+4]_17 chr3L:557438-557558 9.7e-06 33_[+4]_79 chr2R:22661279-22661399 9.7e-06 3_[+4]_109 chr3L:14031890-14032010 1.2e-05 58_[+4]_54 chr3R:10100694-10100814 1.7e-05 55_[+4]_57 chr3R:5998306-5998426 2e-05 28_[+4]_84 chr3R:29997769-29997889 3.2e-05 34_[+4]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAYGGCG width=8 seqs=11 chrX:20507856-20507976 ( 65) AGATGGCG 1 chr2R:20906673-20906793 ( 80) AGATGGCG 1 chr2L:5771296-5771416 ( 88) AGATGGCG 1 chr3L:16202767-16202887 ( 76) AGATGGCG 1 chrX:8892695-8892815 ( 96) CGACGGCG 1 chr3L:557438-557558 ( 34) CGACGGCG 1 chr2R:22661279-22661399 ( 4) CGACGGCG 1 chr3L:14031890-14032010 ( 59) AGAGGGCG 1 chr3R:10100694-10100814 ( 56) AGGTGGCG 1 chr3R:5998306-5998426 ( 29) AGGGGGCG 1 chr3R:29997769-29997889 ( 35) AGGAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 5.5e+003 111 69 -1010 -1010 -1010 -1010 259 -1010 111 -1010 72 -1010 -189 69 13 47 -1010 -1010 259 -1010 -1010 -1010 259 -1010 -1010 257 -1010 -1010 -1010 -1010 259 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.5e+003 0.727273 0.272727 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.727273 0.000000 0.272727 0.000000 0.090909 0.272727 0.181818 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAYGGCG MEME-4 regular expression -------------------------------------------------------------------------------- [AC]G[AG][TC]GGCG -------------------------------------------------------------------------------- Time 26.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCACTGT MEME-5 width = 8 sites = 12 llr = 123 E-value = 8.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:3:: pos.-specific C a3a:82:: probability G :8::3:a: matrix T :::::6:a bits 2.6 * * * 2.3 * * * 2.1 * * * 1.8 *** * * Relative 1.6 ***** ** Entropy 1.3 ***** ** (14.8 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel CGCACTGT consensus C GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1335594-1335714 84 4.84e-06 CTGTCGAGCC CGCACTGT ACTTGTTTTT chr2R:14645104-14645224 37 4.84e-06 AGCACACAGG CGCACTGT GGCGTTTTAG chr3R:27937907-27938027 37 7.33e-06 AGCCAAGATT CGCACCGT AATGCACAGT chr4:1053938-1054058 79 7.33e-06 CTTTGTCATG CGCACCGT GACCTAAAAT chrX:7001010-7001130 76 1.23e-05 TACAGGGTAT CGCACAGT TTAAGCACCA chr3L:11993167-11993287 29 1.23e-05 ACATCGTACG CGCACAGT CACTTAGAGA chr3R:26654710-26654830 24 1.23e-05 CAAAAAAGTT CGCACAGT TTTCTCAATG chr3L:13450253-13450373 59 2.20e-05 ACCTTATCAG CGCAGTGT AATGTGGGGT chrX:12454510-12454630 112 2.20e-05 TATATTTTAA CCCACTGT G chr3L:11293442-11293562 73 2.20e-05 TAGGCTTTGT CCCACTGT GCGCCACCGG chr3L:1139568-1139688 97 2.20e-05 TCGATTTTTT CGCAGTGT CGGCTTTGCT chr3R:10564376-10564496 70 4.18e-05 TGCGAAAAAG CCCAGTGT GACCATGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1335594-1335714 4.8e-06 83_[+5]_29 chr2R:14645104-14645224 4.8e-06 36_[+5]_76 chr3R:27937907-27938027 7.3e-06 36_[+5]_76 chr4:1053938-1054058 7.3e-06 78_[+5]_34 chrX:7001010-7001130 1.2e-05 75_[+5]_37 chr3L:11993167-11993287 1.2e-05 28_[+5]_84 chr3R:26654710-26654830 1.2e-05 23_[+5]_89 chr3L:13450253-13450373 2.2e-05 58_[+5]_54 chrX:12454510-12454630 2.2e-05 111_[+5]_1 chr3L:11293442-11293562 2.2e-05 72_[+5]_40 chr3L:1139568-1139688 2.2e-05 96_[+5]_16 chr3R:10564376-10564496 4.2e-05 69_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCACTGT width=8 seqs=12 chr3L:1335594-1335714 ( 84) CGCACTGT 1 chr2R:14645104-14645224 ( 37) CGCACTGT 1 chr3R:27937907-27938027 ( 37) CGCACCGT 1 chr4:1053938-1054058 ( 79) CGCACCGT 1 chrX:7001010-7001130 ( 76) CGCACAGT 1 chr3L:11993167-11993287 ( 29) CGCACAGT 1 chr3R:26654710-26654830 ( 24) CGCACAGT 1 chr3L:13450253-13450373 ( 59) CGCAGTGT 1 chrX:12454510-12454630 ( 112) CCCACTGT 1 chr3L:11293442-11293562 ( 73) CCCACTGT 1 chr3L:1139568-1139688 ( 97) CGCAGTGT 1 chr3R:10564376-10564496 ( 70) CCCAGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 8.3e+003 -1023 257 -1023 -1023 -1023 57 218 -1023 -1023 257 -1023 -1023 157 -1023 -1023 -1023 -1023 215 59 -1023 -43 -2 -1023 83 -1023 -1023 259 -1023 -1023 -1023 -1023 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 8.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.166667 0.000000 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCACTGT MEME-5 regular expression -------------------------------------------------------------------------------- C[GC]CA[CG][TA]GT -------------------------------------------------------------------------------- Time 32.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22108493-22108613 2.45e-01 120 chr3R:22121334-22121454 7.82e-01 120 chr2R:22661279-22661399 5.96e-02 3_[+4(9.74e-06)]_109 chr3L:15034419-15034539 4.22e-01 33_[+1(6.79e-05)]_79 chr3R:26242626-26242746 9.00e-01 120 chr3R:24817207-24817327 1.00e+00 120 chrX:10601764-10601884 9.43e-02 120 chr3L:2572125-2572245 6.55e-03 120 chr3R:29089772-29089892 9.12e-01 120 chr2L:2729998-2730118 3.64e-06 8_[+3(1.07e-05)]_5_[+3(5.29e-06)]_\ 59_[+5(4.43e-05)]_24 chr3R:26105957-26106077 3.31e-02 120 chr3L:1139568-1139688 2.52e-02 96_[+5(2.20e-05)]_16 chr2R:17533768-17533888 8.96e-01 120 chr3L:11293442-11293562 9.16e-05 72_[+5(2.20e-05)]_15_[+1(1.98e-05)]_\ 17 chr3R:28676989-28677109 5.72e-01 120 chr2R:18451102-18451222 1.00e+00 120 chr2R:20319559-20319679 4.71e-02 120 chr2R:14275533-14275653 1.64e-01 120 chrX:6663267-6663387 2.05e-01 120 chr3R:22494665-22494785 8.56e-01 120 chrX:15532204-15532324 2.13e-01 120 chr2R:18994139-18994259 1.08e-01 120 chr2L:3435232-3435352 5.27e-01 120 chr2L:4861636-4861756 9.90e-01 120 chr2R:17469322-17469442 9.49e-01 120 chr3L:16202767-16202887 3.35e-02 75_[+4(7.29e-06)]_37 chr2R:24629552-24629672 9.38e-02 120 chr3L:7510845-7510965 9.72e-01 120 chr4:1053938-1054058 7.38e-02 78_[+5(7.33e-06)]_34 chr2R:21514487-21514607 9.70e-01 120 chr3L:16146644-16146764 8.43e-01 120 chr3L:94251-94371 5.86e-04 54_[+3(1.18e-06)]_58 chr3R:8920223-8920343 1.77e-01 120 chr3L:1880857-1880977 8.89e-03 103_[+1(2.45e-06)]_9 chrX:10387789-10387909 8.15e-01 120 chr3L:630189-630309 3.42e-01 120 chr3L:5554568-5554688 3.02e-01 120 chr3R:10411867-10411987 3.04e-01 120 chrX:10600665-10600785 1.97e-01 120 chr3L:14205092-14205212 1.00e+00 120 chr2R:21018405-21018525 9.93e-01 120 chr3L:3382017-3382137 9.52e-01 120 chr2R:17698923-17699043 4.09e-01 120 chr3L:9614088-9614208 4.32e-02 86_[+3(6.95e-05)]_26 chr3L:3380570-3380690 8.34e-01 120 chrX:5737270-5737390 4.60e-06 101_[+1(3.65e-06)]_11 chr3R:28599587-28599707 4.59e-01 120 chr2L:19058982-19059102 2.68e-01 120 chr3R:26172162-26172282 1.26e-01 120 chrX:10573681-10573801 3.31e-01 120 chr2L:7635296-7635416 9.94e-01 120 chr2L:19490269-19490389 4.58e-01 120 chr2L:937102-937222 7.05e-03 120 chrX:10067652-10067772 3.83e-01 120 chr3L:3078621-3078741 9.52e-01 120 chr3R:29626075-29626195 1.00e-03 71_[+2(8.41e-05)]_41 chr3L:8440906-8441026 8.89e-01 120 chr3R:26235157-26235277 8.01e-01 120 chr3L:4603530-4603650 4.45e-01 120 chr2L:1158254-1158374 7.80e-01 120 chr2R:10160311-10160431 3.50e-01 120 chr3L:15977685-15977805 9.96e-01 120 chr3R:21887616-21887736 6.22e-03 23_[+1(6.14e-06)]_89 chrX:9352866-9352986 1.48e-01 120 chrX:9892982-9893102 9.90e-01 120 chr2R:14161290-14161410 9.98e-01 120 chr2R:14645104-14645224 1.37e-03 36_[+5(4.84e-06)]_76 chr2L:9493391-9493511 9.75e-01 120 chr3R:19627965-19628085 9.87e-01 120 chr2L:15248752-15248872 5.21e-01 120 chr3L:9838659-9838779 1.85e-02 35_[+2(8.41e-05)]_77 chr2L:5771296-5771416 5.61e-03 87_[+4(7.29e-06)]_25 chr3L:12336401-12336521 1.41e-02 120 chr3R:7892846-7892966 9.98e-01 120 chrX:618700-618820 7.43e-02 120 chrX:1880318-1880438 2.67e-02 4_[+2(8.41e-05)]_108 chr2R:21017461-21017581 1.95e-01 3_[+2(8.41e-05)]_109 chr3R:20008809-20008929 1.04e-01 120 chr2L:18328885-18329005 4.44e-02 120 chr2R:20906673-20906793 2.12e-04 79_[+4(7.29e-06)]_33 chr2R:8914042-8914162 1.35e-03 73_[+2(2.40e-06)]_39 chr3L:10206343-10206463 9.94e-01 120 chr2L:15629935-15630055 6.47e-01 120 chr3R:11872849-11872969 1.74e-01 120 chr3L:8951208-8951328 1.00e+00 120 chrX:4262801-4262921 7.38e-01 120 chrX:10718047-10718167 9.89e-01 120 chrX:20507856-20507976 3.06e-04 20_[+2(8.41e-05)]_36_[+4(7.29e-06)]_\ 48 chrX:9119378-9119498 5.70e-01 120 chr3R:26937551-26937671 1.42e-02 120 chr2L:1486088-1486208 1.25e-01 120 chr3R:23028645-23028765 1.36e-01 120 chr3L:8024985-8025105 7.33e-02 120 chr3L:6752862-6752982 9.33e-01 120 chr2R:21503238-21503358 6.00e-01 120 chr2L:11091233-11091353 9.89e-01 120 chr3L:11074585-11074705 9.77e-01 120 chr2L:8528509-8528629 1.62e-02 120 chr3R:26436699-26436819 9.97e-01 120 chr2L:14562402-14562522 4.74e-01 120 chr2R:7077008-7077128 9.32e-01 120 chr2L:10698123-10698243 9.81e-01 120 chr3R:21837175-21837295 9.97e-01 120 chr2L:9763242-9763362 4.15e-01 120 chr2L:10468544-10468664 6.17e-01 120 chr2R:18433799-18433919 9.29e-02 120 chr3R:14755219-14755339 7.62e-01 120 chr3R:18215434-18215554 1.93e-02 25_[+2(2.40e-06)]_87 chr3R:10648914-10649034 1.87e-01 120 chr2R:13261840-13261960 9.92e-01 120 chr2L:21658529-21658649 2.56e-01 120 chr3L:20771140-20771260 8.19e-01 120 chr2R:18883705-18883825 5.92e-01 120 chr2R:20994794-20994914 8.82e-02 120 chr3R:25004889-25005009 9.35e-01 120 chr3R:26654710-26654830 5.81e-02 23_[+5(1.23e-05)]_89 chr3L:10745732-10745852 9.98e-01 120 chrX:12466576-12466696 1.30e-01 120 chr2L:5043928-5044048 2.52e-04 54_[+5(4.84e-06)]_58 chrX:17176666-17176786 6.09e-01 120 chr3L:8399215-8399335 5.73e-03 52_[+1(6.14e-06)]_60 chr3R:15472758-15472878 7.79e-01 120 chrX:9652166-9652286 2.55e-01 120 chr3R:21993050-21993170 3.76e-01 120 chr3R:18670617-18670737 9.99e-01 120 chrX:11451157-11451277 9.47e-01 120 chrX:5285928-5286048 3.17e-02 120 chr2R:12605700-12605820 9.95e-01 120 chr3R:15351117-15351237 6.43e-01 120 chrX:6375773-6375893 7.81e-01 120 chr3R:5686492-5686612 5.93e-01 120 chr3R:20588561-20588681 9.83e-01 120 chr3L:15532776-15532896 8.74e-01 120 chr2L:16544708-16544828 9.53e-01 120 chr3L:14335971-14336091 1.00e+00 120 chr3R:13999664-13999784 3.07e-01 15_[+4(5.42e-05)]_97 chr3L:16385962-16386082 8.36e-03 7_[+2(2.40e-06)]_105 chr3L:8395713-8395833 9.26e-01 120 chr2L:5520096-5520216 1.07e-01 120 chrX:20631323-20631443 9.86e-01 120 chrX:2136490-2136610 3.70e-03 108_[+1(9.86e-06)]_4 chr2R:11435233-11435353 6.17e-01 120 chrX:17330383-17330503 8.31e-01 120 chr2L:20881437-20881557 3.53e-01 120 chr3R:10100694-10100814 8.06e-04 55_[+4(1.69e-05)]_57 chrX:21322830-21322950 9.77e-01 120 chr2L:1629732-1629852 1.06e-01 120 chr3L:14031890-14032010 1.88e-03 58_[+4(1.22e-05)]_54 chr2R:7254340-7254460 9.54e-01 120 chr2R:21060544-21060664 9.33e-01 120 chr2R:24657153-24657273 9.32e-01 120 chr2L:19517454-19517574 7.92e-02 120 chrX:12454510-12454630 6.03e-02 111_[+5(2.20e-05)]_1 chr3L:8629062-8629182 9.91e-01 120 chr3L:1335594-1335714 9.35e-03 83_[+5(4.84e-06)]_29 chr3L:18791591-18791711 1.91e-01 120 chr2L:16647860-16647980 9.19e-01 120 chr2L:20715138-20715258 9.46e-01 120 chr3R:22664387-22664507 3.51e-02 120 chr3L:2372052-2372172 6.06e-01 120 chrX:8125264-8125384 2.28e-02 120 chr2L:21163514-21163634 5.13e-03 85_[+1(9.86e-06)]_27 chr3L:9508852-9508972 1.02e-01 99_[+3(5.15e-05)]_13 chrX:9193757-9193877 9.55e-01 120 chrX:12595763-12595883 9.28e-01 120 chrX:15297082-15297202 1.00e+00 120 chr2R:17478600-17478720 7.50e-01 120 chr2R:12337696-12337816 1.35e-02 82_[+1(9.86e-06)]_30 chr3L:4607855-4607975 7.74e-01 120 chrX:11570437-11570557 7.81e-01 120 chr3R:15250635-15250755 1.00e+00 120 chr2R:12652583-12652703 9.89e-01 120 chr3R:18399268-18399388 2.50e-04 8_[+3(1.07e-05)]_104 chr3R:27677237-27677357 9.23e-01 120 chr2L:522867-522987 9.91e-01 120 chr2R:15478019-15478139 9.54e-01 120 chr3R:10161326-10161446 1.91e-04 1_[+2(2.40e-06)]_17_[+2(8.41e-05)]_\ 86 chrX:18869636-18869756 2.84e-01 120 chrX:4010974-4011094 7.39e-01 120 chrX:16782267-16782387 2.84e-03 94_[+3(4.11e-06)]_18 chr3R:15837232-15837352 9.65e-01 120 chr2R:13054978-13055098 3.03e-01 120 chr2R:12468403-12468523 9.73e-01 120 chr2L:19159398-19159518 6.23e-01 120 chr2R:23176751-23176871 1.30e-04 12_[+3(1.18e-06)]_16_[+1(2.55e-05)]_\ 76 chr3L:18784693-18784813 1.33e-01 120 chr3R:8207066-8207186 3.04e-01 120 chr3R:27937907-27938027 2.15e-02 36_[+5(7.33e-06)]_76 chr3L:11993167-11993287 2.67e-03 28_[+5(1.23e-05)]_84 chr3R:29997769-29997889 9.26e-02 34_[+4(3.16e-05)]_78 chrX:14602698-14602818 3.00e-03 25_[+1(6.14e-06)]_87 chr3R:8984734-8984854 7.31e-01 120 chrX:10488068-10488188 8.62e-01 120 chr2L:4847306-4847426 5.13e-01 120 chr2L:7395908-7396028 1.00e+00 120 chr2R:23574923-23575043 8.81e-02 120 chr2R:7052443-7052563 9.48e-01 120 chr3R:24917903-24918023 3.97e-01 120 chr2L:10565840-10565960 7.29e-02 120 chr3R:10564376-10564496 4.62e-02 69_[+5(4.18e-05)]_43 chr3R:8960438-8960558 9.93e-01 120 chr2L:5543168-5543288 3.46e-01 120 chr3L:2411712-2411832 9.99e-01 120 chrX:15384110-15384230 9.71e-01 120 chr2R:14909973-14910093 9.45e-01 120 chr2R:13926267-13926387 9.43e-01 120 chr3L:11149023-11149143 9.99e-01 120 chr2R:11275720-11275840 8.88e-01 120 chrX:6267542-6267662 9.69e-01 120 chr3R:9053891-9054011 3.70e-01 120 chrX:1944331-1944451 9.47e-02 120 chrX:7001010-7001130 3.98e-02 75_[+5(1.23e-05)]_37 chrX:13644177-13644297 8.08e-01 120 chrX:20394188-20394308 4.19e-01 120 chr2R:11095279-11095399 4.16e-02 120 chr3L:9847549-9847669 5.30e-01 120 chr2L:20097287-20097407 5.89e-01 120 chr2R:13429168-13429288 7.03e-01 120 chrX:19667049-19667169 2.32e-03 81_[+1(4.13e-05)]_31 chr3R:23356128-23356248 9.91e-01 120 chr3L:8072802-8072922 5.67e-01 120 chr3R:30532092-30532212 9.07e-01 120 chrX:7299487-7299607 7.65e-01 120 chr3L:557438-557558 3.98e-05 10_[+1(6.14e-06)]_15_[+4(9.74e-06)]_\ 79 chr2L:13366216-13366336 9.68e-01 120 chr2L:6698519-6698639 9.27e-01 120 chr3R:26821247-26821367 9.00e-01 120 chrX:9349350-9349470 8.05e-01 120 chr3R:30797428-30797548 3.05e-01 120 chr3R:5998306-5998426 5.14e-03 28_[+4(2.00e-05)]_84 chr3R:12369574-12369694 2.78e-01 120 chr2R:18829729-18829849 3.39e-01 120 chr3L:3389814-3389934 3.73e-01 120 chrX:8892695-8892815 1.68e-03 12_[+2(8.41e-05)]_75_[+4(9.74e-06)]_\ 17 chr3L:7614402-7614522 9.67e-01 120 chr3L:6189709-6189829 1.57e-01 120 chr3R:15145614-15145734 6.02e-01 120 chr3L:13450253-13450373 3.65e-03 58_[+5(2.20e-05)]_54 chr3L:1029729-1029849 8.35e-01 120 chrX:12470677-12470797 6.61e-01 120 chr3L:4239597-4239717 1.01e-01 20_[+1(7.66e-05)]_92 chr3R:25880413-25880533 4.62e-01 120 chr3L:12504159-12504279 5.27e-02 120 chr3R:21151525-21151645 9.53e-01 120 chr2R:11738658-11738778 9.99e-01 120 chr3R:9370596-9370716 2.32e-01 120 chrX:15599818-15599938 8.36e-01 120 chr2L:1150674-1150794 1.39e-01 120 chr3R:29040658-29040778 8.04e-01 120 chr2L:16352659-16352779 5.92e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************