******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/hth.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:12699221-12699341 1.0000 120 chr3R:32009392-32009512 1.0000 120 chr3R:15673782-15673902 1.0000 120 chrX:7273627-7273747 1.0000 120 chr3L:9038696-9038816 1.0000 120 chr3R:15656446-15656566 1.0000 120 chr3R:4867804-4867924 1.0000 120 chr2R:11403817-11403937 1.0000 120 chr3L:19032568-19032688 1.0000 120 chr3R:30383307-30383427 1.0000 120 chr2R:15841667-15841787 1.0000 120 chr3L:11259947-11260067 1.0000 120 chr2L:14472566-14472686 1.0000 120 chr3R:16765894-16766014 1.0000 120 chr2R:20043136-20043256 1.0000 120 chr3R:4878394-4878514 1.0000 120 chr2L:18599274-18599394 1.0000 120 chr2R:5715710-5715830 1.0000 120 chr2R:14801487-14801607 1.0000 120 chr2L:19322872-19322992 1.0000 120 chr2R:19267043-19267163 1.0000 120 chr2R:24580387-24580507 1.0000 120 chr3R:29511528-29511648 1.0000 120 chr2R:5710136-5710256 1.0000 120 chr3R:6937879-6937999 1.0000 120 chr2L:14562013-14562133 1.0000 120 chr3R:6886418-6886538 1.0000 120 chr3L:5856238-5856358 1.0000 120 chr3L:15321553-15321673 1.0000 120 chr3L:15352177-15352297 1.0000 120 chrX:6022893-6023013 1.0000 120 chr2L:18305528-18305648 1.0000 120 chr3L:5983573-5983693 1.0000 120 chr2L:18307207-18307327 1.0000 120 chr3R:16859605-16859725 1.0000 120 chrX:2982888-2983008 1.0000 120 chr3R:10631201-10631321 1.0000 120 chr3L:19032189-19032309 1.0000 120 chr2R:25065739-25065859 1.0000 120 chr2L:21855953-21856073 1.0000 120 chrX:2465791-2465911 1.0000 120 chr2L:14455583-14455703 1.0000 120 chrX:12207140-12207260 1.0000 120 chr2L:14481963-14482083 1.0000 120 chr2L:14456935-14457055 1.0000 120 chr2L:21849838-21849958 1.0000 120 chr2L:1405013-1405133 1.0000 120 chr2L:14517250-14517370 1.0000 120 chrX:7321946-7322066 1.0000 120 chr3R:15643456-15643576 1.0000 120 chr2R:18293247-18293367 1.0000 120 chr2L:6259718-6259838 1.0000 120 chr3R:19352335-19352455 1.0000 120 chr2L:15327207-15327327 1.0000 120 chr2L:14486205-14486325 1.0000 120 chr3L:624245-624365 1.0000 120 chr2L:14446242-14446362 1.0000 120 chr2L:14431801-14431921 1.0000 120 chr3R:6953289-6953409 1.0000 120 chr3L:19556460-19556580 1.0000 120 chr2R:8658029-8658149 1.0000 120 chr2L:19324850-19324970 1.0000 120 chr2R:11548834-11548954 1.0000 120 chr3R:6935704-6935824 1.0000 120 chr3R:9604743-9604863 1.0000 120 chr2L:7545619-7545739 1.0000 120 chr2L:19459453-19459573 1.0000 120 chrX:20690531-20690651 1.0000 120 chr3L:18225514-18225634 1.0000 120 chr3R:22673067-22673187 1.0000 120 chr2L:14459661-14459781 1.0000 120 chr2L:10609058-10609178 1.0000 120 chr2L:14517472-14517592 1.0000 120 chr2L:12623239-12623359 1.0000 120 chr3R:25077507-25077627 1.0000 120 chr2L:19326915-19327035 1.0000 120 chr2L:15331726-15331846 1.0000 120 chr2L:14431602-14431722 1.0000 120 chr3L:18272895-18273015 1.0000 120 chr2L:14554393-14554513 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_hth/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/hth.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 80 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9600 N= 80 sample: seed= 0 hsfrac= 0 searchsize= 9600 norand= no csites= 1000 Letter frequencies in dataset: A 0.255 C 0.231 G 0.233 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.255 C 0.231 G 0.233 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WRATTTAT MEME-1 width = 8 sites = 22 llr = 188 E-value = 2.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 34a:::a: pos.-specific C :::::::: probability G :6:::3:: matrix T 6::aa7:a bits 2.1 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 ******* (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGATTTAT consensus AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:15331726-15331846 27 2.65e-05 TGCTTCCCTT TGATTTAT GTCCTGCCAT chr2L:19324850-19324970 56 2.65e-05 CCTGCTGCTT TGATTTAT tgtcgtgtgc chr3R:6953289-6953409 55 2.65e-05 ACAGTTACAT TGATTTAT GGTCCCTTTT chr2L:14486205-14486325 37 2.65e-05 CCATTGTCCT TGATTTAT GGTCCGTCAT chr2L:6259718-6259838 55 2.65e-05 AAATGCCTTC TGATTTAT TGACGTACTG chrX:6022893-6023013 20 2.65e-05 AATGAACATA TGATTTAT AGGCCGGGCA chr3L:9038696-9038816 53 2.65e-05 GGGTTGTCCA TGATTTAT TGATCTGTCG chr3R:15673782-15673902 97 2.65e-05 CTGTCGCCGT TGATTTAT GCTGACAAAT chr3L:19556460-19556580 58 7.97e-05 TGTAAGCCGG AGATTTAT CGCGTGCTGG chr2L:21849838-21849958 62 7.97e-05 GTAATAAAAG TAATTTAT GCGCGCTAAG chr2L:14481963-14482083 20 7.97e-05 TCGTATTAAA TAATTTAT TGGCAACGTT chr2L:18307207-18307327 30 7.97e-05 TATTGAATTT TAATTTAT ACCCCTTCGA chr2R:24580387-24580507 55 7.97e-05 GACAAGTTCA AGATTTAT GTGCCTACCG chr2R:20043136-20043256 92 7.97e-05 ATATCAGTGA TAATTTAT GTGCGTGCTG chr2R:11403817-11403937 66 1.02e-04 CCATGATTGA TGATTGAT GACAGAGGCG chr3R:16765894-16766014 58 1.28e-04 GTGTCCCGGT AAATTTAT GAGACTTTTT chr2L:14446242-14446362 66 1.72e-04 TAAAAACAAA AGATTGAT GGCATTGGGC chr2R:25065739-25065859 104 1.72e-04 GTGACAATCA TAATTGAT CGCACATCT chr3L:15321553-15321673 12 1.72e-04 CCCTAAATGC AGATTGAT AAATAGTTTC chr3R:19352335-19352455 40 1.94e-04 CATGGCTGTT AAATTGAT GGATTGCTGT chr3R:32009392-32009512 61 1.94e-04 ACCGAGCATA AAATTGAT TCTGTGGTGA chr2R:5715710-5715830 77 2.16e-04 GACTTGCATA CGATTTAT GCCTTTCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15331726-15331846 2.7e-05 26_[+1]_86 chr2L:19324850-19324970 2.7e-05 55_[+1]_57 chr3R:6953289-6953409 2.7e-05 54_[+1]_58 chr2L:14486205-14486325 2.7e-05 36_[+1]_76 chr2L:6259718-6259838 2.7e-05 54_[+1]_58 chrX:6022893-6023013 2.7e-05 19_[+1]_93 chr3L:9038696-9038816 2.7e-05 52_[+1]_60 chr3R:15673782-15673902 2.7e-05 96_[+1]_16 chr3L:19556460-19556580 8e-05 57_[+1]_55 chr2L:21849838-21849958 8e-05 61_[+1]_51 chr2L:14481963-14482083 8e-05 19_[+1]_93 chr2L:18307207-18307327 8e-05 29_[+1]_83 chr2R:24580387-24580507 8e-05 54_[+1]_58 chr2R:20043136-20043256 8e-05 91_[+1]_21 chr2R:11403817-11403937 0.0001 65_[+1]_47 chr3R:16765894-16766014 0.00013 57_[+1]_55 chr2L:14446242-14446362 0.00017 65_[+1]_47 chr2R:25065739-25065859 0.00017 103_[+1]_9 chr3L:15321553-15321673 0.00017 11_[+1]_101 chr3R:19352335-19352455 0.00019 39_[+1]_73 chr3R:32009392-32009512 0.00019 60_[+1]_52 chr2R:5715710-5715830 0.00022 76_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRATTTAT width=8 seqs=22 chr2L:15331726-15331846 ( 27) TGATTTAT 1 chr2L:19324850-19324970 ( 56) TGATTTAT 1 chr3R:6953289-6953409 ( 55) TGATTTAT 1 chr2L:14486205-14486325 ( 37) TGATTTAT 1 chr2L:6259718-6259838 ( 55) TGATTTAT 1 chrX:6022893-6023013 ( 20) TGATTTAT 1 chr3L:9038696-9038816 ( 53) TGATTTAT 1 chr3R:15673782-15673902 ( 97) TGATTTAT 1 chr3L:19556460-19556580 ( 58) AGATTTAT 1 chr2L:21849838-21849958 ( 62) TAATTTAT 1 chr2L:14481963-14482083 ( 20) TAATTTAT 1 chr2L:18307207-18307327 ( 30) TAATTTAT 1 chr2R:24580387-24580507 ( 55) AGATTTAT 1 chr2R:20043136-20043256 ( 92) TAATTTAT 1 chr2R:11403817-11403937 ( 66) TGATTGAT 1 chr3R:16765894-16766014 ( 58) AAATTTAT 1 chr2L:14446242-14446362 ( 66) AGATTGAT 1 chr2R:25065739-25065859 ( 104) TAATTGAT 1 chr3L:15321553-15321673 ( 12) AGATTGAT 1 chr3R:19352335-19352455 ( 40) AAATTGAT 1 chr3R:32009392-32009512 ( 61) AAATTGAT 1 chr2R:5715710-5715830 ( 77) CGATTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9040 bayes= 9.70742 E= 2.7e-002 32 -234 -1110 118 51 -1110 145 -1110 197 -1110 -1110 -1110 -1110 -1110 -1110 183 -1110 -1110 -1110 183 -1110 -1110 23 137 197 -1110 -1110 -1110 -1110 -1110 -1110 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.7e-002 0.318182 0.045455 0.000000 0.636364 0.363636 0.000000 0.636364 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRATTTAT MEME-1 regular expression -------------------------------------------------------------------------------- [TA][GA]ATT[TG]AT -------------------------------------------------------------------------------- Time 1.25 secs. ******************************************************************************** ******************************************************************************** MOTIF ATAAATCA MEME-2 width = 8 sites = 20 llr = 172 E-value = 1.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:9aa:2a pos.-specific C :12::18: probability G :::1:1:1 matrix T :9:::91: bits 2.1 1.9 * * 1.7 * ** * 1.5 ***** * Relative 1.3 ****** * Entropy 1.1 ******** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATAAATCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22673067-22673187 69 1.97e-05 ACAGACATCG ATAAATCA GGGCCAGGAC chrX:20690531-20690651 69 1.97e-05 CGCCCTACTA ATAAATCA TCCCCTCTTG chr3R:6935704-6935824 69 1.97e-05 TGAAACGCAC ATAAATCA AAATGGCCGG chr2R:8658029-8658149 59 1.97e-05 GGGCAGGATC ATAAATCA ATGCGTGACA chr2L:15327207-15327327 80 1.97e-05 CTGTCGGTAT ATAAATCA CCGTGCCACA chr3R:30383307-30383427 92 1.97e-05 CTATTCGGAC ATAAATCA TCTCCTGGCG chr2L:14554393-14554513 101 3.75e-05 GACAGCAGTC ATCAATCA AGTGACACAA chr2L:14455583-14455703 100 3.75e-05 GTCCTGTCAA ATCAATCA TTGTGGGTCT chr3L:19032568-19032688 111 3.75e-05 CTGCTGCCTC ATCAATCA AT chr3R:16859605-16859725 25 5.92e-05 CGAAATTGCC ATAAATAA TGAGCCCAGT chr2R:14801487-14801607 38 5.92e-05 TCACAGGGTC ATAAATAA GGGCGAGCGA chr2R:20043136-20043256 20 5.92e-05 GGCAGGGTAA ATAAATAA ACCTACCGGG chr2L:18307207-18307327 110 7.54e-05 AGCGAGAGAG ACAAATCA AAG chr3R:15673782-15673902 109 7.54e-05 ATTTATGCTG ACAAATCA AATG chr2L:1405013-1405133 37 9.93e-05 CATGTGCAGC ATAAATTA TGTTTTGTCG chr2R:15841667-15841787 20 9.93e-05 CGAGCCAACC ATAAATTA CCCGTTTAAT chr3L:5856238-5856358 77 1.32e-04 GTGCTGGACA ATAAAGCA GCTTGCCAAG chr3R:6886418-6886538 75 1.32e-04 CATCCCAAAG ATAAACCA GGAGAGGCCT chr3L:624245-624365 92 1.68e-04 TGCAACATAC ATAGATCA CCCAGGGTAT chr2L:14562013-14562133 84 1.68e-04 TACACTGTCT ATAAATCG GACACTGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22673067-22673187 2e-05 68_[+2]_44 chrX:20690531-20690651 2e-05 68_[+2]_44 chr3R:6935704-6935824 2e-05 68_[+2]_44 chr2R:8658029-8658149 2e-05 58_[+2]_54 chr2L:15327207-15327327 2e-05 79_[+2]_33 chr3R:30383307-30383427 2e-05 91_[+2]_21 chr2L:14554393-14554513 3.7e-05 100_[+2]_12 chr2L:14455583-14455703 3.7e-05 99_[+2]_13 chr3L:19032568-19032688 3.7e-05 110_[+2]_2 chr3R:16859605-16859725 5.9e-05 24_[+2]_88 chr2R:14801487-14801607 5.9e-05 37_[+2]_75 chr2R:20043136-20043256 5.9e-05 19_[+2]_93 chr2L:18307207-18307327 7.5e-05 109_[+2]_3 chr3R:15673782-15673902 7.5e-05 108_[+2]_4 chr2L:1405013-1405133 9.9e-05 36_[+2]_76 chr2R:15841667-15841787 9.9e-05 19_[+2]_93 chr3L:5856238-5856358 0.00013 76_[+2]_36 chr3R:6886418-6886538 0.00013 74_[+2]_38 chr3L:624245-624365 0.00017 91_[+2]_21 chr2L:14562013-14562133 0.00017 83_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATAAATCA width=8 seqs=20 chr3R:22673067-22673187 ( 69) ATAAATCA 1 chrX:20690531-20690651 ( 69) ATAAATCA 1 chr3R:6935704-6935824 ( 69) ATAAATCA 1 chr2R:8658029-8658149 ( 59) ATAAATCA 1 chr2L:15327207-15327327 ( 80) ATAAATCA 1 chr3R:30383307-30383427 ( 92) ATAAATCA 1 chr2L:14554393-14554513 ( 101) ATCAATCA 1 chr2L:14455583-14455703 ( 100) ATCAATCA 1 chr3L:19032568-19032688 ( 111) ATCAATCA 1 chr3R:16859605-16859725 ( 25) ATAAATAA 1 chr2R:14801487-14801607 ( 38) ATAAATAA 1 chr2R:20043136-20043256 ( 20) ATAAATAA 1 chr2L:18307207-18307327 ( 110) ACAAATCA 1 chr3R:15673782-15673902 ( 109) ACAAATCA 1 chr2L:1405013-1405133 ( 37) ATAAATTA 1 chr2R:15841667-15841787 ( 20) ATAAATTA 1 chr3L:5856238-5856358 ( 77) ATAAAGCA 1 chr3R:6886418-6886538 ( 75) ATAAACCA 1 chr3L:624245-624365 ( 92) ATAGATCA 1 chr2L:14562013-14562133 ( 84) ATAAATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9040 bayes= 9.76193 E= 1.0e-001 197 -1097 -1097 -1097 -1097 -121 -1097 168 174 -62 -1097 -1097 190 -1097 -222 -1097 197 -1097 -1097 -1097 -1097 -221 -222 168 -76 170 -1097 -149 190 -1097 -222 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.0e-001 1.000000 0.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.850000 0.150000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.050000 0.050000 0.900000 0.150000 0.750000 0.000000 0.100000 0.950000 0.000000 0.050000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATAAATCA MEME-2 regular expression -------------------------------------------------------------------------------- ATAAATCA -------------------------------------------------------------------------------- Time 2.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACASNY MEME-3 width = 8 sites = 49 llr = 323 E-value = 1.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7:a222 pos.-specific C :::a:333 probability G :a:::521 matrix T a:3::134 bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ***** (9.5 bits) 0.8 ***** 0.6 ***** 0.4 ***** 0.2 ****** * 0.0 -------- Multilevel TGACAGTT consensus T CCC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19326915-19327035 47 6.01e-05 TCAGCGGGAC TGACAGCC CGAAAATTGA chr2L:19459453-19459573 14 6.01e-05 AGTGTCAAAC TGACAGTC GTTGACATCC chr2R:11548834-11548954 45 6.01e-05 ATAATTGTTG TGACAGCc agacagacac chr2L:19324850-19324970 33 6.01e-05 TGGCGCCAAC TGACAGTT TTTTCCCTGC chr3R:6953289-6953409 43 6.01e-05 CTGTTGACGT TGACAGTT ACATTGATTT chr3L:11259947-11260067 67 6.01e-05 ATCTCTTCTT TGACAGTT TCTATGACCT chr2L:1405013-1405133 67 9.00e-05 TTGACATCCC TGACAGAT ATGCATCTAT chrX:12207140-12207260 92 9.00e-05 GTTgactgac tgacagac agacagtcag chr2L:14431602-14431722 51 1.77e-04 CTGGGTAATT TGACACTT CGGACAGAAT chr2L:14517472-14517592 81 1.77e-04 TGTTTTGCTG TGACACCT CCCAGCATTC chr2L:14486205-14486325 75 1.77e-04 CCACCAAAGT TGACACTT CTGCGTATAT chr2L:21849838-21849958 46 1.77e-04 CAAATACCCC TGACAGGT AATAAAAGTA chr3R:16859605-16859725 42 1.77e-04 ATGAGCCCAG TGACAGGC GTCATTTTCG chrX:6022893-6023013 45 1.77e-04 GCATGTCTGC TGACAGGC CGCAGTTTCG chrX:7273627-7273747 111 1.77e-04 AACAAACCAA TGACAGGC TA chr3R:32009392-32009512 76 1.77e-04 GATTCTGTGG TGACACCC AGTCGCAGAT chr2L:14554393-14554513 90 2.36e-04 GAGTATGTGT TGACAGCA GTCATCAATC chr3R:25077507-25077627 89 2.36e-04 ATTACGGTTC TGACACAT CGCACAGCAG chr2L:14456935-14457055 72 2.36e-04 GATGTGTTTA TGACACAT CTTGACAGTA chr2L:14472566-14472686 64 2.36e-04 AATAATTTTT TGACAGCA CACCCAAGGA chr3L:9038696-9038816 5 2.36e-04 CAGG TGACACAC GGGTTTTCGT chrX:20690531-20690651 89 3.03e-04 CCCTCTTGGA TGTCAGCT ATTTCCGTAG chr2L:14517250-14517370 91 3.03e-04 AGTGGTCACA TGTCAGCT TGACGCGCAT chr3L:5856238-5856358 51 3.03e-04 TATGAATCAA TGTCAGTT GGAAGCGTGT chr3L:12699221-12699341 50 3.03e-04 GTCAAGCGGC TGTCAGTT TGCCGCATCG chr2L:14455583-14455703 4 4.10e-04 AAT TGACAACC ATTTGCACTT chr2R:25065739-25065859 95 4.10e-04 GTGTCAACTG TGACAATC ATAATTGATC chrX:2465791-2465911 51 4.71e-04 CCTGTGTCAA TGTCAGAC TTCAGCGCTA chr3R:19352335-19352455 66 5.14e-04 GTGCGACTTT TGACACCA CACACAATTG chr3L:18272895-18273015 57 6.42e-04 actgactgac tgacaaac tgacgaactg chr2L:6259718-6259838 41 6.42e-04 GGCGTGTGCA TGACAAAT GCCTTCTGAT chr3R:6937879-6937999 22 6.42e-04 GCTGACGAAC TGTCACTC ACTGGCGCAC chr2R:19267043-19267163 16 6.42e-04 AATAATGGCC TGTCACTC AGAAAGCAAC chr2L:21855953-21856073 107 6.56e-04 TGTGTCTGTC TGACAGAG TTACAG chr3L:18225514-18225634 90 7.01e-04 ccgcactGAC TGACAAGT TTCACCTGTC chr3R:15643456-15643576 31 7.01e-04 GCGCTGAAAG TGACACAA GTCATAAATT chr2R:8658029-8658149 12 8.78e-04 AACAAAGAGC TGACATTT TCATTTGAAA chr2L:14446242-14446362 33 8.78e-04 GAGAATCGCT TGACAGGG ACCTTGGGCT chr2L:18307207-18307327 11 8.78e-04 TGTTGTGCTG TGACATTT TTATTGAATT chr2L:14431801-14431921 8 1.09e-03 CACCGAG TGTCAATT GATCACAGAC chr3R:15656446-15656566 26 1.12e-03 ATCGAAGCCC TGTCAGTG TGCTGTCTTT chr2R:18293247-18293367 104 1.23e-03 CTTTTGTTCG TGTCACCA GCAATTTGC chr2R:20043136-20043256 108 1.23e-03 ATGTGCGTGC TGACATGC GGGAC chr2R:5710136-5710256 66 1.30e-03 AATGTCAAAG TGACAACG CCTAATATAT chr2R:5715710-5715830 25 1.41e-03 CGGTAATAAA TGTCACAA GAATCATTTG chr3L:15352177-15352297 97 1.55e-03 CCTCCTCAAA TGTCAGGG ACGTCGGCGC chr2R:11403817-11403937 109 1.55e-03 CATGTCCAGT TGTCATCC ATAA chr3R:6886418-6886538 37 1.63e-03 AATTTCTACC TGTCAATA GATGAGCGCT chr2L:18599274-18599394 83 1.93e-03 TATCATAAAT TGTCATCA CATAAATAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19326915-19327035 6e-05 46_[+3]_66 chr2L:19459453-19459573 6e-05 13_[+3]_99 chr2R:11548834-11548954 6e-05 44_[+3]_68 chr2L:19324850-19324970 6e-05 32_[+3]_80 chr3R:6953289-6953409 6e-05 42_[+3]_70 chr3L:11259947-11260067 6e-05 66_[+3]_46 chr2L:1405013-1405133 9e-05 66_[+3]_46 chrX:12207140-12207260 9e-05 91_[+3]_21 chr2L:14431602-14431722 0.00018 50_[+3]_62 chr2L:14517472-14517592 0.00018 80_[+3]_32 chr2L:14486205-14486325 0.00018 74_[+3]_38 chr2L:21849838-21849958 0.00018 45_[+3]_67 chr3R:16859605-16859725 0.00018 41_[+3]_71 chrX:6022893-6023013 0.00018 44_[+3]_68 chrX:7273627-7273747 0.00018 110_[+3]_2 chr3R:32009392-32009512 0.00018 75_[+3]_37 chr2L:14554393-14554513 0.00024 89_[+3]_23 chr3R:25077507-25077627 0.00024 88_[+3]_24 chr2L:14456935-14457055 0.00024 71_[+3]_41 chr2L:14472566-14472686 0.00024 63_[+3]_49 chr3L:9038696-9038816 0.00024 4_[+3]_108 chrX:20690531-20690651 0.0003 88_[+3]_24 chr2L:14517250-14517370 0.0003 90_[+3]_22 chr3L:5856238-5856358 0.0003 50_[+3]_62 chr3L:12699221-12699341 0.0003 49_[+3]_63 chr2L:14455583-14455703 0.00041 3_[+3]_109 chr2R:25065739-25065859 0.00041 94_[+3]_18 chrX:2465791-2465911 0.00047 50_[+3]_62 chr3R:19352335-19352455 0.00051 65_[+3]_47 chr3L:18272895-18273015 0.00064 56_[+3]_56 chr2L:6259718-6259838 0.00064 40_[+3]_72 chr3R:6937879-6937999 0.00064 21_[+3]_91 chr2R:19267043-19267163 0.00064 15_[+3]_97 chr2L:21855953-21856073 0.00066 106_[+3]_6 chr3L:18225514-18225634 0.0007 89_[+3]_23 chr3R:15643456-15643576 0.0007 30_[+3]_82 chr2R:8658029-8658149 0.00088 11_[+3]_101 chr2L:14446242-14446362 0.00088 32_[+3]_80 chr2L:18307207-18307327 0.00088 10_[+3]_102 chr2L:14431801-14431921 0.0011 7_[+3]_105 chr3R:15656446-15656566 0.0011 25_[+3]_87 chr2R:18293247-18293367 0.0012 103_[+3]_9 chr2R:20043136-20043256 0.0012 107_[+3]_5 chr2R:5710136-5710256 0.0013 65_[+3]_47 chr2R:5715710-5715830 0.0014 24_[+3]_88 chr3L:15352177-15352297 0.0016 96_[+3]_16 chr2R:11403817-11403937 0.0016 108_[+3]_4 chr3R:6886418-6886538 0.0016 36_[+3]_76 chr2L:18599274-18599394 0.0019 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACASNY width=8 seqs=49 chr2L:19326915-19327035 ( 47) TGACAGCC 1 chr2L:19459453-19459573 ( 14) TGACAGTC 1 chr2R:11548834-11548954 ( 45) TGACAGCC 1 chr2L:19324850-19324970 ( 33) TGACAGTT 1 chr3R:6953289-6953409 ( 43) TGACAGTT 1 chr3L:11259947-11260067 ( 67) TGACAGTT 1 chr2L:1405013-1405133 ( 67) TGACAGAT 1 chrX:12207140-12207260 ( 92) TGACAGAC 1 chr2L:14431602-14431722 ( 51) TGACACTT 1 chr2L:14517472-14517592 ( 81) TGACACCT 1 chr2L:14486205-14486325 ( 75) TGACACTT 1 chr2L:21849838-21849958 ( 46) TGACAGGT 1 chr3R:16859605-16859725 ( 42) TGACAGGC 1 chrX:6022893-6023013 ( 45) TGACAGGC 1 chrX:7273627-7273747 ( 111) TGACAGGC 1 chr3R:32009392-32009512 ( 76) TGACACCC 1 chr2L:14554393-14554513 ( 90) TGACAGCA 1 chr3R:25077507-25077627 ( 89) TGACACAT 1 chr2L:14456935-14457055 ( 72) TGACACAT 1 chr2L:14472566-14472686 ( 64) TGACAGCA 1 chr3L:9038696-9038816 ( 5) TGACACAC 1 chrX:20690531-20690651 ( 89) TGTCAGCT 1 chr2L:14517250-14517370 ( 91) TGTCAGCT 1 chr3L:5856238-5856358 ( 51) TGTCAGTT 1 chr3L:12699221-12699341 ( 50) TGTCAGTT 1 chr2L:14455583-14455703 ( 4) TGACAACC 1 chr2R:25065739-25065859 ( 95) TGACAATC 1 chrX:2465791-2465911 ( 51) TGTCAGAC 1 chr3R:19352335-19352455 ( 66) TGACACCA 1 chr3L:18272895-18273015 ( 57) TGACAAAC 1 chr2L:6259718-6259838 ( 41) TGACAAAT 1 chr3R:6937879-6937999 ( 22) TGTCACTC 1 chr2R:19267043-19267163 ( 16) TGTCACTC 1 chr2L:21855953-21856073 ( 107) TGACAGAG 1 chr3L:18225514-18225634 ( 90) TGACAAGT 1 chr3R:15643456-15643576 ( 31) TGACACAA 1 chr2R:8658029-8658149 ( 12) TGACATTT 1 chr2L:14446242-14446362 ( 33) TGACAGGG 1 chr2L:18307207-18307327 ( 11) TGACATTT 1 chr2L:14431801-14431921 ( 8) TGTCAATT 1 chr3R:15656446-15656566 ( 26) TGTCAGTG 1 chr2R:18293247-18293367 ( 104) TGTCACCA 1 chr2R:20043136-20043256 ( 108) TGACATGC 1 chr2R:5710136-5710256 ( 66) TGACAACG 1 chr2R:5715710-5715830 ( 25) TGTCACAA 1 chr3L:15352177-15352297 ( 97) TGTCAGGG 1 chr2R:11403817-11403937 ( 109) TGTCATCC 1 chr3R:6886418-6886538 ( 37) TGTCAATA 1 chr2L:18599274-18599394 ( 83) TGTCATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9040 bayes= 8.64024 E= 1.4e-001 -1226 -1226 -1226 183 -1226 -1226 210 -1226 145 -1226 -1226 12 -1226 211 -1226 -1226 197 -1226 -1226 -1226 -64 20 101 -146 -18 31 -51 22 -64 59 -119 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.4e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.693878 0.000000 0.000000 0.306122 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.163265 0.265306 0.469388 0.102041 0.224490 0.285714 0.163265 0.326531 0.163265 0.346939 0.102041 0.387755 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACASNY MEME-3 regular expression -------------------------------------------------------------------------------- TG[AT]CA[GC][TCA][TC] -------------------------------------------------------------------------------- Time 3.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGCAGG MEME-4 width = 8 sites = 2 llr = 23 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :a::a::: probability G a:aa::aa matrix T :::::::: bits 2.1 ***** ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30383307-30383427 107 9.34e-06 TCATCTCCTG GCGGCAGG CGGCGG chr3R:15656446-15656566 67 9.34e-06 AGTTGTCTGT GCGGCAGG TTAAAGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30383307-30383427 9.3e-06 106_[+4]_6 chr3R:15656446-15656566 9.3e-06 66_[+4]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCAGG width=8 seqs=2 chr3R:30383307-30383427 ( 107) GCGGCAGG 1 chr3R:15656446-15656566 ( 67) GCGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9040 bayes= 12.1418 E= 2.9e+004 -765 -765 210 -765 -765 211 -765 -765 -765 -765 210 -765 -765 -765 210 -765 -765 211 -765 -765 197 -765 -765 -765 -765 -765 210 -765 -765 -765 210 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGG MEME-4 regular expression -------------------------------------------------------------------------------- GCGGCAGG -------------------------------------------------------------------------------- Time 4.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCCTGCC MEME-5 width = 8 sites = 4 llr = 43 E-value = 4.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aa3:aa probability G a::::a:: matrix T :a::8::: bits 2.1 * ** *** 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTCCTGCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:15331726-15331846 35 1.22e-05 TTTGATTTAT GTCCTGCC ATTGGACATC chr2L:14486205-14486325 103 1.22e-05 CCCGGAGTTC GTCCTGCC ATTGTCATCC chr3L:5856238-5856358 106 1.22e-05 GTACCGGCAC GTCCTGCC AGCCAGG chrX:2465791-2465911 94 2.22e-05 AATGTCTCTC GTCCCGCC GACGAGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15331726-15331846 1.2e-05 34_[+5]_78 chr2L:14486205-14486325 1.2e-05 102_[+5]_10 chr3L:5856238-5856358 1.2e-05 105_[+5]_7 chrX:2465791-2465911 2.2e-05 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCCTGCC width=8 seqs=4 chr2L:15331726-15331846 ( 35) GTCCTGCC 1 chr2L:14486205-14486325 ( 103) GTCCTGCC 1 chr3L:5856238-5856358 ( 106) GTCCTGCC 1 chrX:2465791-2465911 ( 94) GTCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9040 bayes= 11.1415 E= 4.0e+004 -865 -865 210 -865 -865 -865 -865 183 -865 211 -865 -865 -865 211 -865 -865 -865 11 -865 141 -865 -865 210 -865 -865 211 -865 -865 -865 211 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCCTGCC MEME-5 regular expression -------------------------------------------------------------------------------- GTCC[TC]GCC -------------------------------------------------------------------------------- Time 5.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12699221-12699341 1.56e-01 120 chr3R:32009392-32009512 3.54e-02 120 chr3R:15673782-15673902 5.21e-04 96_[+1(2.65e-05)]_4_[+2(7.54e-05)]_\ 4 chrX:7273627-7273747 7.88e-02 120 chr3L:9038696-9038816 3.36e-02 52_[+1(2.65e-05)]_60 chr3R:15656446-15656566 1.09e-02 66_[+4(9.34e-06)]_46 chr3R:4867804-4867924 7.10e-01 120 chr2R:11403817-11403937 1.21e-02 120 chr3L:19032568-19032688 1.14e-01 110_[+2(3.75e-05)]_2 chr3R:30383307-30383427 9.03e-04 91_[+2(1.97e-05)]_7_[+4(9.34e-06)]_\ 6 chr2R:15841667-15841787 2.69e-01 19_[+2(9.93e-05)]_93 chr3L:11259947-11260067 7.40e-02 66_[+3(6.01e-05)]_46 chr2L:14472566-14472686 2.34e-01 120 chr3R:16765894-16766014 3.01e-01 120 chr2R:20043136-20043256 1.69e-03 19_[+2(5.92e-05)]_64_[+1(7.97e-05)]_\ 21 chr3R:4878394-4878514 2.64e-01 120 chr2L:18599274-18599394 1.81e-01 120 chr2R:5715710-5715830 2.64e-01 120 chr2R:14801487-14801607 2.30e-01 37_[+2(5.92e-05)]_75 chr2L:19322872-19322992 3.70e-01 120 chr2R:19267043-19267163 1.19e-01 120 chr2R:24580387-24580507 6.20e-02 54_[+1(7.97e-05)]_58 chr3R:29511528-29511648 9.39e-01 120 chr2R:5710136-5710256 2.76e-01 120 chr3R:6937879-6937999 2.61e-01 120 chr2L:14562013-14562133 6.36e-02 120 chr3R:6886418-6886538 1.21e-01 120 chr3L:5856238-5856358 6.06e-04 105_[+5(1.22e-05)]_7 chr3L:15321553-15321673 5.18e-02 120 chr3L:15352177-15352297 8.72e-01 120 chrX:6022893-6023013 8.95e-03 19_[+1(2.65e-05)]_93 chr2L:18305528-18305648 2.01e-01 120 chr3L:5983573-5983693 6.79e-01 120 chr2L:18307207-18307327 7.60e-03 29_[+1(7.97e-05)]_72_[+2(7.54e-05)]_\ 3 chr3R:16859605-16859725 9.69e-03 24_[+2(5.92e-05)]_88 chrX:2982888-2983008 9.81e-01 120 chr3R:10631201-10631321 9.52e-01 120 chr3L:19032189-19032309 4.75e-01 120 chr2R:25065739-25065859 6.96e-02 120 chr2L:21855953-21856073 5.65e-01 120 chrX:2465791-2465911 2.35e-02 93_[+5(2.22e-05)]_19 chr2L:14455583-14455703 4.86e-03 99_[+2(3.75e-05)]_13 chrX:12207140-12207260 4.68e-02 91_[+3(9.00e-05)]_21 chr2L:14481963-14482083 2.01e-01 19_[+1(7.97e-05)]_93 chr2L:14456935-14457055 3.64e-01 120 chr2L:21849838-21849958 2.80e-02 61_[+1(7.97e-05)]_51 chr2L:1405013-1405133 2.33e-03 36_[+2(9.93e-05)]_22_[+3(9.00e-05)]_\ 46 chr2L:14517250-14517370 4.07e-01 120 chrX:7321946-7322066 8.31e-01 120 chr3R:15643456-15643576 3.52e-01 120 chr2R:18293247-18293367 2.45e-01 120 chr2L:6259718-6259838 9.78e-03 54_[+1(2.65e-05)]_58 chr3R:19352335-19352455 1.38e-01 120 chr2L:15327207-15327327 1.20e-02 79_[+2(1.97e-05)]_33 chr2L:14486205-14486325 1.06e-06 14_[+4(9.34e-06)]_14_[+1(2.65e-05)]_\ 58_[+5(1.22e-05)]_10 chr3L:624245-624365 3.86e-01 120 chr2L:14446242-14446362 1.23e-01 120 chr2L:14431801-14431921 1.84e-02 120 chr3R:6953289-6953409 7.67e-03 42_[+3(6.01e-05)]_4_[+1(2.65e-05)]_\ 58 chr3L:19556460-19556580 1.47e-01 57_[+1(7.97e-05)]_55 chr2R:8658029-8658149 1.37e-02 58_[+2(1.97e-05)]_54 chr2L:19324850-19324970 1.04e-02 32_[+3(6.01e-05)]_15_[+1(2.65e-05)]_\ 57 chr2R:11548834-11548954 5.55e-03 44_[+3(6.01e-05)]_68 chr3R:6935704-6935824 3.69e-02 68_[+2(1.97e-05)]_44 chr3R:9604743-9604863 2.52e-01 120 chr2L:7545619-7545739 8.59e-01 120 chr2L:19459453-19459573 2.02e-01 13_[+3(6.01e-05)]_99 chrX:20690531-20690651 1.57e-02 68_[+2(1.97e-05)]_44 chr3L:18225514-18225634 6.43e-01 120 chr3R:22673067-22673187 2.99e-02 68_[+2(1.97e-05)]_44 chr2L:14459661-14459781 9.71e-01 120 chr2L:10609058-10609178 9.09e-01 120 chr2L:14517472-14517592 4.79e-01 120 chr2L:12623239-12623359 2.90e-01 120 chr3R:25077507-25077627 1.11e-01 120 chr2L:19326915-19327035 2.10e-02 46_[+3(6.01e-05)]_66 chr2L:15331726-15331846 1.26e-03 26_[+1(2.65e-05)]_[+5(1.22e-05)]_78 chr2L:14431602-14431722 6.62e-02 120 chr3L:18272895-18273015 1.19e-01 120 chr2L:14554393-14554513 2.90e-02 100_[+2(3.75e-05)]_12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n02.farnam.hpc.yale.internal ********************************************************************************