******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/hkb.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4807965-4808085 1.0000 120 chr3L:6612460-6612580 1.0000 120 chrX:18280458-18280578 1.0000 120 chr2R:20522670-20522790 1.0000 120 chr2R:20132833-20132953 1.0000 120 chr3R:15947724-15947844 1.0000 120 chr2L:21026756-21026876 1.0000 120 chr3R:6881412-6881532 1.0000 120 chrX:5983520-5983640 1.0000 120 chr3R:23199504-23199624 1.0000 120 chr2L:10237260-10237380 1.0000 120 chr2L:1449921-1450041 1.0000 120 chr3L:9507597-9507717 1.0000 120 chr2L:8091105-8091225 1.0000 120 chr2L:12606096-12606216 1.0000 120 chrX:19329854-19329974 1.0000 120 chrX:19295083-19295203 1.0000 120 chr2L:11823584-11823704 1.0000 120 chr2R:20592350-20592470 1.0000 120 chr3L:11558825-11558945 1.0000 120 chr2L:7262735-7262855 1.0000 120 chr3L:3775380-3775500 1.0000 120 chr2L:18430355-18430475 1.0000 120 chr2L:14526489-14526609 1.0000 120 chr2L:3059659-3059779 1.0000 120 chr2R:17022405-17022525 1.0000 120 chr3L:22202698-22202818 1.0000 120 chr2R:20163805-20163925 1.0000 120 chr3L:13328205-13328325 1.0000 120 chr2L:4253026-4253146 1.0000 120 chr2L:19836382-19836502 1.0000 120 chr2R:11391158-11391278 1.0000 120 chr2R:19147790-19147910 1.0000 120 chr2L:18454896-18455016 1.0000 120 chr3L:15695856-15695976 1.0000 120 chr3R:26443522-26443642 1.0000 120 chr3L:14607498-14607618 1.0000 120 chr2L:17989077-17989197 1.0000 120 chr2R:11404469-11404589 1.0000 120 chr2L:6277781-6277901 1.0000 120 chr3R:11669152-11669272 1.0000 120 chrX:7432063-7432183 1.0000 120 chr2L:6171313-6171433 1.0000 120 chr3R:15090594-15090714 1.0000 120 chr3L:7382830-7382950 1.0000 120 chr3L:13180140-13180260 1.0000 120 chr3R:25692700-25692820 1.0000 120 chr3L:22398502-22398622 1.0000 120 chr3L:14192650-14192770 1.0000 120 chr2L:17476874-17476994 1.0000 120 chr3R:22591957-22592077 1.0000 120 chr3R:26443723-26443843 1.0000 120 chr3R:9577076-9577196 1.0000 120 chr3R:9881004-9881124 1.0000 120 chrX:17633255-17633375 1.0000 120 chr3L:6561176-6561296 1.0000 120 chr2R:8648223-8648343 1.0000 120 chr2L:589367-589487 1.0000 120 chr2L:12670566-12670686 1.0000 120 chr2R:12724624-12724744 1.0000 120 chr2R:14591941-14592061 1.0000 120 chr3L:21112426-21112546 1.0000 120 chr3R:10056813-10056933 1.0000 120 chr2R:22594036-22594156 1.0000 120 chr2L:8629940-8630060 1.0000 120 chr2R:18263534-18263654 1.0000 120 chr3L:1899242-1899362 1.0000 120 chrX:11855203-11855323 1.0000 120 chrX:8734344-8734464 1.0000 120 chr2L:12682972-12683092 1.0000 120 chr2L:18656337-18656457 1.0000 120 chr2L:2861947-2862067 1.0000 120 chr2L:113415-113535 1.0000 120 chrX:15383766-15383886 1.0000 120 chr2L:17374837-17374957 1.0000 120 chr3R:22409561-22409681 1.0000 120 chr3R:25692906-25693026 1.0000 120 chr2L:7032013-7032133 1.0000 120 chrM:1283-1403 1.0000 120 chr2R:15096417-15096537 1.0000 120 chr3L:9548049-9548169 1.0000 120 chr2L:13602962-13603082 1.0000 120 chr2R:19176529-19176649 1.0000 120 chr2L:5229079-5229199 1.0000 120 chr3L:12066924-12067044 1.0000 120 chr3R:31217419-31217539 1.0000 120 chr2L:12460224-12460344 1.0000 120 chr2R:20551584-20551704 1.0000 120 chr2R:19148841-19148961 1.0000 120 chrX:9993585-9993705 1.0000 120 chr3L:5969093-5969213 1.0000 120 chr3L:11164549-11164669 1.0000 120 chr3R:19101092-19101212 1.0000 120 chr2R:14152893-14153013 1.0000 120 chr2R:21878754-21878874 1.0000 120 chr2L:437517-437637 1.0000 120 chr2R:23621769-23621889 1.0000 120 chr3R:8741730-8741850 1.0000 120 chr2R:25000273-25000393 1.0000 120 chr3R:8304002-8304122 1.0000 120 chr3L:16843504-16843624 1.0000 120 chr2R:21456825-21456945 1.0000 120 chr2L:10754786-10754906 1.0000 120 chr3L:10963446-10963566 1.0000 120 chr2L:1653925-1654045 1.0000 120 chr2R:7014732-7014852 1.0000 120 chr3R:12246230-12246350 1.0000 120 chr3L:22192263-22192383 1.0000 120 chr3L:3110526-3110646 1.0000 120 chr3L:9442762-9442882 1.0000 120 chr3L:3737662-3737782 1.0000 120 chr2L:3059457-3059577 1.0000 120 chr3L:21092656-21092776 1.0000 120 chr3R:26916172-26916292 1.0000 120 chr3R:22751921-22752041 1.0000 120 chrX:18621869-18621989 1.0000 120 chr2R:14403198-14403318 1.0000 120 chr3L:19003223-19003343 1.0000 120 chr2L:10720854-10720974 1.0000 120 chr3R:21396931-21397051 1.0000 120 chr3L:17615370-17615490 1.0000 120 chr2R:22933685-22933805 1.0000 120 chr3L:12020053-12020173 1.0000 120 chr2R:8648023-8648143 1.0000 120 chr3L:6561380-6561500 1.0000 120 chr3R:29574820-29574940 1.0000 120 chr3R:23332185-23332305 1.0000 120 chr3R:31724336-31724456 1.0000 120 chr3R:9331820-9331940 1.0000 120 chr2R:21634225-21634345 1.0000 120 chr2R:6545126-6545246 1.0000 120 chr3L:9751753-9751873 1.0000 120 chr3R:15667050-15667170 1.0000 120 chr2R:16283340-16283460 1.0000 120 chr2R:16218901-16219021 1.0000 120 chr2R:23187353-23187473 1.0000 120 chr2R:20831561-20831681 1.0000 120 chr3R:14811782-14811902 1.0000 120 chr2L:9612826-9612946 1.0000 120 chr2R:14592141-14592261 1.0000 120 chr3L:13958048-13958168 1.0000 120 chrX:14603782-14603902 1.0000 120 chrX:2167597-2167717 1.0000 120 chrX:3730919-3731039 1.0000 120 chr3R:11869882-11870002 1.0000 120 chr3R:20683300-20683420 1.0000 120 chr2R:9439031-9439151 1.0000 120 chrX:2170373-2170493 1.0000 120 chr3R:10354408-10354528 1.0000 120 chr3L:15729042-15729162 1.0000 120 chr3L:133990-134110 1.0000 120 chr3L:10323422-10323542 1.0000 120 chr2R:9281549-9281669 1.0000 120 chr2L:18924888-18925008 1.0000 120 chr3L:441734-441854 1.0000 120 chr2L:3000003-3000123 1.0000 120 chrX:12901161-12901281 1.0000 120 chrX:17633456-17633576 1.0000 120 chr2L:8092116-8092236 1.0000 120 chr2L:874036-874156 1.0000 120 chr3L:14515732-14515852 1.0000 120 chr3R:9915338-9915458 1.0000 120 chr3L:17488895-17489015 1.0000 120 chr3L:22843401-22843521 1.0000 120 chr2R:11648246-11648366 1.0000 120 chr3R:9377006-9377126 1.0000 120 chrX:9247284-9247404 1.0000 120 chr2L:7597537-7597657 1.0000 120 chr2L:2862146-2862266 1.0000 120 chr2R:7035073-7035193 1.0000 120 chr2R:24281039-24281159 1.0000 120 chr2R:20938254-20938374 1.0000 120 chr2R:13183899-13184019 1.0000 120 chr3L:673501-673621 1.0000 120 chr2L:9569494-9569614 1.0000 120 chr2R:9428249-9428369 1.0000 120 chr2L:9613029-9613149 1.0000 120 chr3L:441940-442060 1.0000 120 chr2R:12066244-12066364 1.0000 120 chr2L:14226655-14226775 1.0000 120 chr3L:20104010-20104130 1.0000 120 chr2L:19362798-19362918 1.0000 120 chrX:2340455-2340575 1.0000 120 chr3R:28573304-28573424 1.0000 120 chr3R:5565211-5565331 1.0000 120 chr3L:15755053-15755173 1.0000 120 chrX:7969495-7969615 1.0000 120 chr2R:7232625-7232745 1.0000 120 chr2R:10107812-10107932 1.0000 120 chr3R:13958612-13958732 1.0000 120 chr3R:29503952-29504072 1.0000 120 chr3L:14205695-14205815 1.0000 120 chr3L:16930542-16930662 1.0000 120 chr2R:12636262-12636382 1.0000 120 chrX:14650806-14650926 1.0000 120 chr2R:12743279-12743399 1.0000 120 chr3L:16712572-16712692 1.0000 120 chr3R:5150634-5150754 1.0000 120 chr2L:6087885-6088005 1.0000 120 chr2R:8396825-8396945 1.0000 120 chr3R:8304203-8304323 1.0000 120 chr3L:2244093-2244213 1.0000 120 chr3L:14456166-14456286 1.0000 120 chr2L:23065076-23065196 1.0000 120 chr3R:7155329-7155449 1.0000 120 chrX:2158148-2158268 1.0000 120 chr3L:6488845-6488965 1.0000 120 chr2R:22799276-22799396 1.0000 120 chrX:8442347-8442467 1.0000 120 chr3R:17811767-17811887 1.0000 120 chr3R:22397366-22397486 1.0000 120 chr3R:12222232-12222352 1.0000 120 chr2R:11731968-11732088 1.0000 120 chr3R:13674701-13674821 1.0000 120 chrX:15697360-15697480 1.0000 120 chr2R:7674650-7674770 1.0000 120 chr3L:21202285-21202405 1.0000 120 chr3R:19569175-19569295 1.0000 120 chr3L:15637389-15637509 1.0000 120 chr3R:26956453-26956573 1.0000 120 chr2R:16802555-16802675 1.0000 120 chr3L:8827737-8827857 1.0000 120 chr2R:20977265-20977385 1.0000 120 chr2L:12504523-12504643 1.0000 120 chr3R:10354609-10354729 1.0000 120 chr2R:11892386-11892506 1.0000 120 chr2R:13963920-13964040 1.0000 120 chr2R:1515302-1515422 1.0000 120 chr3R:8306609-8306729 1.0000 120 chr2R:16047392-16047512 1.0000 120 chr3R:9868585-9868705 1.0000 120 chr3R:31463124-31463244 1.0000 120 chr3L:18820040-18820160 1.0000 120 chr2R:12201257-12201377 1.0000 120 chr2R:11452436-11452556 1.0000 120 chr2L:3867634-3867754 1.0000 120 chr3R:27205249-27205369 1.0000 120 chr2R:12507457-12507577 1.0000 120 chr2L:8888814-8888934 1.0000 120 chr3R:19568976-19569096 1.0000 120 chr3L:7654502-7654622 1.0000 120 chr3R:12429266-12429386 1.0000 120 chrX:4104221-4104341 1.0000 120 chr2L:21683609-21683729 1.0000 120 chr2L:9912611-9912731 1.0000 120 chr2L:7827837-7827957 1.0000 120 chr3R:9258322-9258442 1.0000 120 chr3L:3046927-3047047 1.0000 120 chr3R:28547159-28547279 1.0000 120 chr3L:7869238-7869358 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_hkb/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/hkb.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.213 G 0.206 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.213 G 0.206 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGAGGGK MEME-1 width = 8 sites = 23 llr = 227 E-value = 5.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::9:::: pos.-specific C 1a:::::2 probability G 7:a1aaa3 matrix T :::::::5 bits 2.3 ** *** 2.1 ** *** 1.8 ** *** 1.6 ** *** Relative 1.4 ****** Entropy 1.1 ****** (14.3 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGAGGGT consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:28547159-28547279 23 6.64e-06 CGTGCTGAAA GCGAGGGT CGCTCGTTCA chrX:14650806-14650926 48 6.64e-06 CGCCTCGGTG GCGAGGGT TGGCCCAAGA chr3R:10056813-10056933 29 6.64e-06 GGTAAAAGAA GCGAGGGT CGCTTAAGGC chr3L:6561176-6561296 50 6.64e-06 AGCTTAAAGT GCGAGGGT TGATCCTGAA chr3R:11669152-11669272 28 6.64e-06 CGGCATAACA GCGAGGGT TGATTCAACG chr2L:7262735-7262855 12 6.64e-06 CACCCAGAAA GCGAGGGT CGCTCGGCCA chrX:4807965-4808085 10 6.64e-06 CCGTTCGAC GCGAGGGT AGTTCCTAAA chr3R:10354408-10354528 13 1.14e-05 CGGGAATTTA GCGAGGGG AGATCGAAGA chr2L:3059457-3059577 34 1.14e-05 TTGCTTAACA GCGAGGGG TGGCAGACAA chr3L:22192263-22192383 43 1.14e-05 ATGGAGTGGT GCGAGGGG CGAAATGTGA chrX:11855203-11855323 58 1.14e-05 GTGCGATAGG GCGAGGGG CAACTCAAAA chrX:3730919-3731039 81 1.63e-05 TTATAATGAG GCGAGGGC GGTTTTAAAA chr2R:18263534-18263654 48 1.63e-05 TCGACATACA GCGAGGGC GGCTTGATAA chr3R:15947724-15947844 18 1.63e-05 TTGCTAAATG GCGAGGGC AGCTTTAAAA chr3R:9258322-9258442 85 2.32e-05 TTCGAAAGGC CCGAGGGT CGCTTGGCCT chr2R:12743279-12743399 22 3.75e-05 GTTGCTGCAA ACGAGGGT TGTTTTCGCA chr3L:12066924-12067044 2 3.75e-05 A ACGAGGGT GGTTTAATCT chrX:7432063-7432183 39 3.75e-05 TCAAATGGTG CCGAGGGG TTCTTCGAAA chr2R:8648023-8648143 45 4.43e-05 GCGAAGGGGC ACGAGGGG AGCACGATGA chr3R:8304002-8304122 49 4.89e-05 TCGGTTGAGT GCGGGGGT GGATTCAGCA chr2R:13963920-13964040 77 5.23e-05 AACAAGTCGT GCGGGGGG CCGCGAGCAT chr3L:15755053-15755173 64 5.74e-05 CATAAAGCCC CCGAGGGC CATTCAAAGA chr2R:24281039-24281159 19 6.43e-05 CAAATAGTTG ACGAGGGC TGCCGCTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28547159-28547279 6.6e-06 22_[+1]_90 chrX:14650806-14650926 6.6e-06 47_[+1]_65 chr3R:10056813-10056933 6.6e-06 28_[+1]_84 chr3L:6561176-6561296 6.6e-06 49_[+1]_63 chr3R:11669152-11669272 6.6e-06 27_[+1]_85 chr2L:7262735-7262855 6.6e-06 11_[+1]_101 chrX:4807965-4808085 6.6e-06 9_[+1]_103 chr3R:10354408-10354528 1.1e-05 12_[+1]_100 chr2L:3059457-3059577 1.1e-05 33_[+1]_79 chr3L:22192263-22192383 1.1e-05 42_[+1]_70 chrX:11855203-11855323 1.1e-05 57_[+1]_55 chrX:3730919-3731039 1.6e-05 80_[+1]_32 chr2R:18263534-18263654 1.6e-05 47_[+1]_65 chr3R:15947724-15947844 1.6e-05 17_[+1]_95 chr3R:9258322-9258442 2.3e-05 84_[+1]_28 chr2R:12743279-12743399 3.8e-05 21_[+1]_91 chr3L:12066924-12067044 3.8e-05 1_[+1]_111 chrX:7432063-7432183 3.8e-05 38_[+1]_74 chr2R:8648023-8648143 4.4e-05 44_[+1]_68 chr3R:8304002-8304122 4.9e-05 48_[+1]_64 chr2R:13963920-13964040 5.2e-05 76_[+1]_36 chr3L:15755053-15755173 5.7e-05 63_[+1]_49 chr2R:24281039-24281159 6.4e-05 18_[+1]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAGGGK width=8 seqs=23 chr3R:28547159-28547279 ( 23) GCGAGGGT 1 chrX:14650806-14650926 ( 48) GCGAGGGT 1 chr3R:10056813-10056933 ( 29) GCGAGGGT 1 chr3L:6561176-6561296 ( 50) GCGAGGGT 1 chr3R:11669152-11669272 ( 28) GCGAGGGT 1 chr2L:7262735-7262855 ( 12) GCGAGGGT 1 chrX:4807965-4808085 ( 10) GCGAGGGT 1 chr3R:10354408-10354528 ( 13) GCGAGGGG 1 chr2L:3059457-3059577 ( 34) GCGAGGGG 1 chr3L:22192263-22192383 ( 43) GCGAGGGG 1 chrX:11855203-11855323 ( 58) GCGAGGGG 1 chrX:3730919-3731039 ( 81) GCGAGGGC 1 chr2R:18263534-18263654 ( 48) GCGAGGGC 1 chr3R:15947724-15947844 ( 18) GCGAGGGC 1 chr3R:9258322-9258442 ( 85) CCGAGGGT 1 chr2R:12743279-12743399 ( 22) ACGAGGGT 1 chr3L:12066924-12067044 ( 2) ACGAGGGT 1 chrX:7432063-7432183 ( 39) CCGAGGGG 1 chr2R:8648023-8648143 ( 45) ACGAGGGG 1 chr3R:8304002-8304122 ( 49) GCGGGGGT 1 chr2R:13963920-13964040 ( 77) GCGGGGGG 1 chr3L:15755053-15755173 ( 64) CCGAGGGC 1 chr2R:24281039-24281159 ( 19) ACGAGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 5.3e-005 -75 -71 176 -1117 -1117 223 -1117 -1117 -1117 -1117 228 -1117 164 -1117 -124 -1117 -1117 -1117 228 -1117 -1117 -1117 228 -1117 -1117 -1117 228 -1117 -1117 3 56 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 5.3e-005 0.173913 0.130435 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.217391 0.304348 0.478261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 regular expression -------------------------------------------------------------------------------- GCGAGGG[TGC] -------------------------------------------------------------------------------- Time 7.35 secs. ******************************************************************************** ******************************************************************************** MOTIF DCCCTCGC MEME-2 width = 8 sites = 16 llr = 164 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5::::::: pos.-specific C :a8a:a:a probability G 3:3:::a: matrix T 3:::a::: bits 2.3 * * *** 2.1 * * *** 1.8 * ***** 1.6 * ***** Relative 1.4 ******* Entropy 1.1 ******* (14.8 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCCTCGC consensus G G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:441734-441854 92 7.60e-06 TATAGAACCC ACCCTCGC ACAGAAATGG chr3R:11869882-11870002 89 7.60e-06 TTCTGAATCC ACCCTCGC TTTGATTTTT chr2R:23187353-23187473 77 7.60e-06 TGCTTGGCCC ACCCTCGC TGACCACTGC chr3R:29574820-29574940 111 7.60e-06 TGCTCGATCC ACCCTCGC TG chr2R:20163805-20163925 96 7.60e-06 TTACTGATTA ACCCTCGC GATATCTGCA chr2R:20522670-20522790 104 7.60e-06 TCGACGATCC ACCCTCGC AATATCTAG chr2L:5229079-5229199 76 1.30e-05 TCCCCAATCT GCCCTCGC CTTCGTTTGG chr3R:25692906-25693026 45 1.30e-05 TCTCGTAGCT GCCCTCGC CCTCCGGAAT chrX:19295083-19295203 103 1.30e-05 CATTAAAACC GCCCTCGC ACAAACTTGT chr2R:15096417-15096537 91 2.04e-05 CCGGGCTATC TCCCTCGC AGCTAACCGA chr2L:4253026-4253146 107 2.04e-05 CATTTGCCCA TCCCTCGC ATTAAT chr2L:18430355-18430475 109 2.04e-05 AGTATATTCT TCCCTCGC TTTT chr2L:12504523-12504643 47 2.78e-05 ACGCACACAA ACGCTCGC CGATGATGTT chr3R:28573304-28573424 10 2.78e-05 TAGAAACAA ACGCTCGC GCCCATTTCA chr2L:3059659-3059779 64 3.30e-05 AACGGAAAGA GCGCTCGC GCCAATCGTC chr2L:12682972-12683092 82 4.02e-05 TGCTCGTGGA TCGCTCGC TGCAGGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:441734-441854 7.6e-06 91_[+2]_21 chr3R:11869882-11870002 7.6e-06 88_[+2]_24 chr2R:23187353-23187473 7.6e-06 76_[+2]_36 chr3R:29574820-29574940 7.6e-06 110_[+2]_2 chr2R:20163805-20163925 7.6e-06 95_[+2]_17 chr2R:20522670-20522790 7.6e-06 103_[+2]_9 chr2L:5229079-5229199 1.3e-05 75_[+2]_37 chr3R:25692906-25693026 1.3e-05 44_[+2]_68 chrX:19295083-19295203 1.3e-05 102_[+2]_10 chr2R:15096417-15096537 2e-05 90_[+2]_22 chr2L:4253026-4253146 2e-05 106_[+2]_6 chr2L:18430355-18430475 2e-05 108_[+2]_4 chr2L:12504523-12504643 2.8e-05 46_[+2]_66 chr3R:28573304-28573424 2.8e-05 9_[+2]_103 chr2L:3059659-3059779 3.3e-05 63_[+2]_49 chr2L:12682972-12683092 4e-05 81_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DCCCTCGC width=8 seqs=16 chr3L:441734-441854 ( 92) ACCCTCGC 1 chr3R:11869882-11870002 ( 89) ACCCTCGC 1 chr2R:23187353-23187473 ( 77) ACCCTCGC 1 chr3R:29574820-29574940 ( 111) ACCCTCGC 1 chr2R:20163805-20163925 ( 96) ACCCTCGC 1 chr2R:20522670-20522790 ( 104) ACCCTCGC 1 chr2L:5229079-5229199 ( 76) GCCCTCGC 1 chr3R:25692906-25693026 ( 45) GCCCTCGC 1 chrX:19295083-19295203 ( 103) GCCCTCGC 1 chr2R:15096417-15096537 ( 91) TCCCTCGC 1 chr2L:4253026-4253146 ( 107) TCCCTCGC 1 chr2L:18430355-18430475 ( 109) TCCCTCGC 1 chr2L:12504523-12504643 ( 47) ACGCTCGC 1 chr3R:28573304-28573424 ( 10) ACGCTCGC 1 chr2L:3059659-3059779 ( 64) GCGCTCGC 1 chr2L:12682972-12683092 ( 82) TCGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 1.5e+000 77 -1064 28 -21 -1064 223 -1064 -1064 -1064 181 28 -1064 -1064 223 -1064 -1064 -1064 -1064 -1064 179 -1064 223 -1064 -1064 -1064 -1064 228 -1064 -1064 223 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.5e+000 0.500000 0.000000 0.250000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCCCTCGC MEME-2 regular expression -------------------------------------------------------------------------------- [AGT]C[CG]CTCGC -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TYGCCRSC MEME-3 width = 8 sites = 21 llr = 193 E-value = 5.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::4:: pos.-specific C 23:aa:3a probability G ::a::57: matrix T 87:::::: bits 2.3 *** * 2.1 *** * 1.8 *** * 1.6 *** * Relative 1.4 *** ** Entropy 1.1 * *** ** (13.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCCGGC consensus CC AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7262735-7262855 97 7.01e-06 TAGGCTCATG TTGCCGGC GATGCTGCCG chr3R:27205249-27205369 90 1.22e-05 ATTTTTTTCT TCGCCGGC TGAACCTAAT chr3R:19569175-19569295 15 1.22e-05 TCTCCATCCG TCGCCGGC TTTGTTGTTG chr3R:17811767-17811887 87 1.22e-05 TTACGCATTT TCGCCGGC ACAACAAGCC chr2R:12743279-12743399 75 1.22e-05 TATCATTGTT TCGCCGGC ATTCGGGAAC chr2R:14403198-14403318 76 2.21e-05 CAAAAGAAAA TTGCCAGC AGAGGAAAAA chr2L:10754786-10754906 27 2.21e-05 ATGCTAATAT TTGCCAGC TAATTTGGCC chrX:17633255-17633375 96 2.21e-05 AACGGACGCT TTGCCAGC GAGCCAAAGG chr3R:9258322-9258442 24 2.94e-05 CTCCCCATCC TTGCCGCC CTTGAACGCG chr2R:14152893-14153013 59 2.94e-05 CTGCACTAAG TTGCCGCC GCTCTGCAGA chr2L:437517-437637 102 3.45e-05 GTTGTCGCCG CTGCCGGC GCTCTATTCA chr2L:17374837-17374957 53 3.45e-05 TGACCTCAAT CTGCCGGC AATTTGATTC chr2R:11648246-11648366 67 4.19e-05 TTCAGTAACT TCGCCAGC AAACTTTGCA chr2R:11731968-11732088 81 4.73e-05 GTTTTGTTGT TCGCCGCC TCGCCTGAGA chr3L:22843401-22843521 113 6.14e-05 ACACGCATTG TTGCCACC chr3L:10963446-10963566 67 6.14e-05 CTGACCAAGA TTGCCACC GGTTTTTGTG chr3L:15729042-15729162 71 6.87e-05 ATGCTTCCTG CTGCCAGC AGTTGCTGTT chr2R:16218901-16219021 40 6.87e-05 TGGCAAGCGA CTGCCAGC ATGCATCAAA chrX:9993585-9993705 111 7.41e-05 GCAGCGCGTG CTGCCGCC TC chr2L:11823584-11823704 72 8.17e-05 TATCTTAAAG TCGCCACC TTTAAAAGTA chr3L:10323422-10323542 82 1.06e-04 TAGCGACAGT TTGCCCGC GTCGTTCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7262735-7262855 7e-06 96_[+3]_16 chr3R:27205249-27205369 1.2e-05 89_[+3]_23 chr3R:19569175-19569295 1.2e-05 14_[+3]_98 chr3R:17811767-17811887 1.2e-05 86_[+3]_26 chr2R:12743279-12743399 1.2e-05 74_[+3]_38 chr2R:14403198-14403318 2.2e-05 75_[+3]_37 chr2L:10754786-10754906 2.2e-05 26_[+3]_86 chrX:17633255-17633375 2.2e-05 95_[+3]_17 chr3R:9258322-9258442 2.9e-05 23_[+3]_89 chr2R:14152893-14153013 2.9e-05 58_[+3]_54 chr2L:437517-437637 3.5e-05 101_[+3]_11 chr2L:17374837-17374957 3.5e-05 52_[+3]_60 chr2R:11648246-11648366 4.2e-05 66_[+3]_46 chr2R:11731968-11732088 4.7e-05 80_[+3]_32 chr3L:22843401-22843521 6.1e-05 112_[+3] chr3L:10963446-10963566 6.1e-05 66_[+3]_46 chr3L:15729042-15729162 6.9e-05 70_[+3]_42 chr2R:16218901-16219021 6.9e-05 39_[+3]_73 chrX:9993585-9993705 7.4e-05 110_[+3]_2 chr2L:11823584-11823704 8.2e-05 71_[+3]_41 chr3L:10323422-10323542 0.00011 81_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYGCCRSC width=8 seqs=21 chr2L:7262735-7262855 ( 97) TTGCCGGC 1 chr3R:27205249-27205369 ( 90) TCGCCGGC 1 chr3R:19569175-19569295 ( 15) TCGCCGGC 1 chr3R:17811767-17811887 ( 87) TCGCCGGC 1 chr2R:12743279-12743399 ( 75) TCGCCGGC 1 chr2R:14403198-14403318 ( 76) TTGCCAGC 1 chr2L:10754786-10754906 ( 27) TTGCCAGC 1 chrX:17633255-17633375 ( 96) TTGCCAGC 1 chr3R:9258322-9258442 ( 24) TTGCCGCC 1 chr2R:14152893-14153013 ( 59) TTGCCGCC 1 chr2L:437517-437637 ( 102) CTGCCGGC 1 chr2L:17374837-17374957 ( 53) CTGCCGGC 1 chr2R:11648246-11648366 ( 67) TCGCCAGC 1 chr2R:11731968-11732088 ( 81) TCGCCGCC 1 chr3L:22843401-22843521 ( 113) TTGCCACC 1 chr3L:10963446-10963566 ( 67) TTGCCACC 1 chr3L:15729042-15729162 ( 71) CTGCCAGC 1 chr2R:16218901-16219021 ( 40) CTGCCAGC 1 chrX:9993585-9993705 ( 111) CTGCCGCC 1 chr2L:11823584-11823704 ( 72) TCGCCACC 1 chr3L:10323422-10323542 ( 82) TTGCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 5.5e+004 -1104 16 -1104 140 -1104 64 -1104 121 -1104 -1104 228 -1104 -1104 223 -1104 -1104 -1104 223 -1104 -1104 55 -216 135 -1104 -1104 64 169 -1104 -1104 223 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.5e+004 0.000000 0.238095 0.000000 0.761905 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.047619 0.523810 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGCCRSC MEME-3 regular expression -------------------------------------------------------------------------------- [TC][TC]GCC[GA][GC]C -------------------------------------------------------------------------------- Time 19.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGCTG MEME-4 width = 8 sites = 2 llr = 24 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:: probability G aa:aa::a matrix T ::a:::a: bits 2.3 ** *** * 2.1 ** *** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2244093-2244213 63 6.55e-06 ATCTGCAGCA GGTGGCTG GTCGAAATTT chr2R:20551584-20551704 78 6.55e-06 TGCAGATTCT GGTGGCTG TAATCCGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2244093-2244213 6.6e-06 62_[+4]_50 chr2R:20551584-20551704 6.6e-06 77_[+4]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGCTG width=8 seqs=2 chr3L:2244093-2244213 ( 63) GGTGGCTG 1 chr2R:20551584-20551704 ( 78) GGTGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.2e+005 -765 -765 227 -765 -765 -765 227 -765 -765 -765 -765 179 -765 -765 227 -765 -765 -765 227 -765 -765 222 -765 -765 -765 -765 -765 179 -765 -765 227 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCTG MEME-4 regular expression -------------------------------------------------------------------------------- GGTGGCTG -------------------------------------------------------------------------------- Time 25.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGSGG MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa::5:: probability G a::aa5aa matrix T :::::::: bits 2.3 ***** ** 2.1 ***** ** 1.8 ***** ** 1.6 ***** ** Relative 1.4 ******** Entropy 1.1 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGCGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14607498-14607618 66 3.47e-06 CTTTGAGTAA GCCGGGGG TATGTAATGC chrX:15383766-15383886 45 7.05e-06 CCCATCGGAT GCCGGCGG AAAAGCCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14607498-14607618 3.5e-06 65_[+5]_47 chrX:15383766-15383886 7.1e-06 44_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGSGG width=8 seqs=2 chr3L:14607498-14607618 ( 66) GCCGGGGG 1 chrX:15383766-15383886 ( 45) GCCGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.1e+005 -765 -765 227 -765 -765 222 -765 -765 -765 222 -765 -765 -765 -765 227 -765 -765 -765 227 -765 -765 122 128 -765 -765 -765 227 -765 -765 -765 227 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGSGG MEME-5 regular expression -------------------------------------------------------------------------------- GCCGG[CG]GG -------------------------------------------------------------------------------- Time 32.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4807965-4808085 8.83e-02 9_[+1(6.64e-06)]_103 chr3L:6612460-6612580 9.81e-01 120 chrX:18280458-18280578 7.46e-01 120 chr2R:20522670-20522790 1.07e-01 103_[+2(7.60e-06)]_9 chr2R:20132833-20132953 9.93e-01 120 chr3R:15947724-15947844 2.44e-02 17_[+1(1.63e-05)]_95 chr2L:21026756-21026876 8.07e-01 120 chr3R:6881412-6881532 9.88e-01 120 chrX:5983520-5983640 1.00e+00 120 chr3R:23199504-23199624 2.45e-01 120 chr2L:10237260-10237380 3.20e-01 120 chr2L:1449921-1450041 8.15e-01 120 chr3L:9507597-9507717 2.59e-01 120 chr2L:8091105-8091225 7.36e-02 120 chr2L:12606096-12606216 7.63e-01 120 chrX:19329854-19329974 6.74e-01 120 chrX:19295083-19295203 9.19e-02 102_[+2(1.30e-05)]_10 chr2L:11823584-11823704 4.71e-01 71_[+3(8.17e-05)]_41 chr2R:20592350-20592470 2.45e-02 120 chr3L:11558825-11558945 7.77e-01 120 chr2L:7262735-7262855 3.80e-06 11_[+1(6.64e-06)]_77_[+3(7.01e-06)]_\ 16 chr3L:3775380-3775500 8.60e-01 120 chr2L:18430355-18430475 1.90e-02 108_[+2(2.04e-05)]_4 chr2L:14526489-14526609 2.15e-01 120 chr2L:3059659-3059779 6.80e-02 63_[+2(3.30e-05)]_49 chr2R:17022405-17022525 3.25e-01 120 chr3L:22202698-22202818 9.49e-02 120 chr2R:20163805-20163925 4.89e-02 95_[+2(7.60e-06)]_17 chr3L:13328205-13328325 9.24e-01 120 chr2L:4253026-4253146 8.36e-02 106_[+2(2.04e-05)]_6 chr2L:19836382-19836502 6.56e-01 120 chr2R:11391158-11391278 6.84e-01 120 chr2R:19147790-19147910 1.62e-01 120 chr2L:18454896-18455016 5.42e-02 120 chr3L:15695856-15695976 5.90e-01 120 chr3R:26443522-26443642 1.00e+00 120 chr3L:14607498-14607618 1.70e-03 65_[+5(3.47e-06)]_47 chr2L:17989077-17989197 2.40e-01 120 chr2R:11404469-11404589 1.21e-01 120 chr2L:6277781-6277901 3.79e-01 120 chr3R:11669152-11669272 6.92e-02 27_[+1(6.64e-06)]_85 chrX:7432063-7432183 2.29e-02 38_[+1(3.75e-05)]_74 chr2L:6171313-6171433 9.03e-01 120 chr3R:15090594-15090714 8.74e-01 120 chr3L:7382830-7382950 6.41e-01 120 chr3L:13180140-13180260 5.74e-01 120 chr3R:25692700-25692820 3.14e-01 120 chr3L:22398502-22398622 6.02e-01 120 chr3L:14192650-14192770 4.07e-01 120 chr2L:17476874-17476994 4.78e-01 120 chr3R:22591957-22592077 5.47e-01 120 chr3R:26443723-26443843 7.68e-01 120 chr3R:9577076-9577196 6.84e-01 120 chr3R:9881004-9881124 8.96e-01 120 chrX:17633255-17633375 5.37e-03 95_[+3(2.21e-05)]_17 chr3L:6561176-6561296 6.67e-02 49_[+1(6.64e-06)]_63 chr2R:8648223-8648343 9.65e-01 120 chr2L:589367-589487 5.78e-02 46_[+4(6.31e-05)]_6_[+4(6.31e-05)]_\ 52 chr2L:12670566-12670686 7.66e-01 120 chr2R:12724624-12724744 1.17e-01 120 chr2R:14591941-14592061 7.64e-01 120 chr3L:21112426-21112546 2.09e-01 120 chr3R:10056813-10056933 1.05e-02 28_[+1(6.64e-06)]_84 chr2R:22594036-22594156 2.58e-01 120 chr2L:8629940-8630060 4.89e-01 120 chr2R:18263534-18263654 7.64e-03 47_[+1(1.63e-05)]_65 chr3L:1899242-1899362 3.44e-02 120 chrX:11855203-11855323 3.84e-02 57_[+1(1.14e-05)]_55 chrX:8734344-8734464 2.98e-01 120 chr2L:12682972-12683092 6.51e-03 81_[+2(4.02e-05)]_31 chr2L:18656337-18656457 9.93e-01 120 chr2L:2861947-2862067 9.95e-01 120 chr2L:113415-113535 1.08e-02 120 chrX:15383766-15383886 4.33e-03 44_[+5(7.05e-06)]_68 chr2L:17374837-17374957 1.20e-01 52_[+3(3.45e-05)]_60 chr3R:22409561-22409681 8.03e-01 120 chr3R:25692906-25693026 2.03e-02 44_[+2(1.30e-05)]_41_[+2(8.52e-05)]_\ 19 chr2L:7032013-7032133 8.12e-01 120 chrM:1283-1403 1.00e+00 120 chr2R:15096417-15096537 7.82e-02 90_[+2(2.04e-05)]_22 chr3L:9548049-9548169 8.70e-02 61_[+2(8.52e-05)]_51 chr2L:13602962-13603082 1.73e-02 120 chr2R:19176529-19176649 3.94e-01 120 chr2L:5229079-5229199 1.21e-02 75_[+2(1.30e-05)]_37 chr3L:12066924-12067044 6.30e-02 1_[+1(3.75e-05)]_111 chr3R:31217419-31217539 3.87e-04 51_[+1(9.11e-05)]_61 chr2L:12460224-12460344 9.31e-01 120 chr2R:20551584-20551704 2.10e-02 77_[+4(6.55e-06)]_35 chr2R:19148841-19148961 2.40e-01 120 chrX:9993585-9993705 1.39e-02 69_[+2(8.52e-05)]_33_[+3(7.41e-05)]_\ 2 chr3L:5969093-5969213 9.11e-01 120 chr3L:11164549-11164669 9.49e-01 120 chr3R:19101092-19101212 7.62e-01 120 chr2R:14152893-14153013 5.43e-02 58_[+3(2.94e-05)]_54 chr2R:21878754-21878874 9.93e-01 120 chr2L:437517-437637 7.22e-03 101_[+3(3.45e-05)]_11 chr2R:23621769-23621889 2.68e-01 120 chr3R:8741730-8741850 9.88e-01 120 chr2R:25000273-25000393 8.20e-01 120 chr3R:8304002-8304122 3.08e-02 48_[+1(4.89e-05)]_64 chr3L:16843504-16843624 4.70e-03 31_[+4(3.89e-05)]_81 chr2R:21456825-21456945 6.10e-01 120 chr2L:10754786-10754906 2.99e-02 26_[+3(2.21e-05)]_86 chr3L:10963446-10963566 1.92e-01 66_[+3(6.14e-05)]_46 chr2L:1653925-1654045 7.01e-01 120 chr2R:7014732-7014852 9.97e-01 120 chr3R:12246230-12246350 7.14e-01 120 chr3L:22192263-22192383 3.73e-02 42_[+1(1.14e-05)]_70 chr3L:3110526-3110646 4.28e-01 120 chr3L:9442762-9442882 4.24e-01 120 chr3L:3737662-3737782 1.35e-01 120 chr2L:3059457-3059577 3.09e-04 33_[+1(1.14e-05)]_79 chr3L:21092656-21092776 1.99e-02 120 chr3R:26916172-26916292 3.40e-02 120 chr3R:22751921-22752041 1.01e-01 120 chrX:18621869-18621989 8.44e-01 120 chr2R:14403198-14403318 3.85e-02 75_[+3(2.21e-05)]_37 chr3L:19003223-19003343 2.50e-01 120 chr2L:10720854-10720974 4.45e-01 120 chr3R:21396931-21397051 4.29e-01 120 chr3L:17615370-17615490 5.93e-03 112_[+5(3.47e-06)] chr2R:22933685-22933805 5.84e-01 120 chr3L:12020053-12020173 8.94e-01 120 chr2R:8648023-8648143 1.25e-01 44_[+1(4.43e-05)]_68 chr3L:6561380-6561500 1.75e-01 120 chr3R:29574820-29574940 3.04e-02 110_[+2(7.60e-06)]_2 chr3R:23332185-23332305 2.53e-02 120 chr3R:31724336-31724456 4.11e-01 120 chr3R:9331820-9331940 3.72e-02 120 chr2R:21634225-21634345 2.58e-01 120 chr2R:6545126-6545246 4.43e-01 120 chr3L:9751753-9751873 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chr2L:3000003-3000123 7.83e-01 120 chrX:12901161-12901281 4.00e-01 120 chrX:17633456-17633576 9.93e-01 120 chr2L:8092116-8092236 2.84e-01 120 chr2L:874036-874156 9.47e-01 120 chr3L:14515732-14515852 7.05e-02 120 chr3R:9915338-9915458 3.60e-01 120 chr3L:17488895-17489015 7.77e-01 120 chr3L:22843401-22843521 5.94e-02 112_[+3(6.14e-05)] chr2R:11648246-11648366 2.06e-01 66_[+3(4.19e-05)]_46 chr3R:9377006-9377126 4.91e-01 120 chrX:9247284-9247404 7.68e-01 120 chr2L:7597537-7597657 9.95e-01 120 chr2L:2862146-2862266 6.08e-01 120 chr2R:7035073-7035193 1.66e-01 120 chr2R:24281039-24281159 1.05e-02 18_[+1(6.43e-05)]_94 chr2R:20938254-20938374 1.00e+00 120 chr2R:13183899-13184019 4.05e-01 120 chr3L:673501-673621 7.69e-02 120 chr2L:9569494-9569614 7.65e-01 120 chr2R:9428249-9428369 4.27e-01 120 chr2L:9613029-9613149 8.04e-01 120 chr3L:441940-442060 6.68e-01 120 chr2R:12066244-12066364 9.95e-01 120 chr2L:14226655-14226775 4.34e-02 120 chr3L:20104010-20104130 9.38e-01 120 chr2L:19362798-19362918 4.91e-01 120 chrX:2340455-2340575 4.36e-03 120 chr3R:28573304-28573424 2.90e-02 9_[+2(2.78e-05)]_103 chr3R:5565211-5565331 2.12e-01 120 chr3L:15755053-15755173 7.06e-02 63_[+1(5.74e-05)]_49 chrX:7969495-7969615 3.82e-01 120 chr2R:7232625-7232745 8.39e-01 120 chr2R:10107812-10107932 1.17e-01 120 chr3R:13958612-13958732 9.99e-01 120 chr3R:29503952-29504072 9.10e-01 120 chr3L:14205695-14205815 9.17e-01 120 chr3L:16930542-16930662 2.72e-01 120 chr2R:12636262-12636382 3.40e-01 120 chrX:14650806-14650926 3.08e-03 47_[+1(6.64e-06)]_65 chr2R:12743279-12743399 1.33e-04 21_[+1(3.75e-05)]_45_[+3(1.22e-05)]_\ 38 chr3L:16712572-16712692 3.79e-02 120 chr3R:5150634-5150754 6.12e-01 120 chr2L:6087885-6088005 2.30e-01 120 chr2R:8396825-8396945 8.33e-01 120 chr3R:8304203-8304323 9.74e-01 120 chr3L:2244093-2244213 7.93e-03 62_[+4(6.55e-06)]_50 chr3L:14456166-14456286 4.80e-01 120 chr2L:23065076-23065196 4.73e-01 120 chr3R:7155329-7155449 9.48e-01 120 chrX:2158148-2158268 7.57e-01 120 chr3L:6488845-6488965 8.69e-01 120 chr2R:22799276-22799396 1.71e-01 120 chrX:8442347-8442467 2.27e-01 120 chr3R:17811767-17811887 1.32e-02 86_[+3(1.22e-05)]_26 chr3R:22397366-22397486 8.90e-02 120 chr3R:12222232-12222352 5.99e-01 120 chr2R:11731968-11732088 3.31e-02 80_[+3(4.73e-05)]_32 chr3R:13674701-13674821 3.79e-01 120 chrX:15697360-15697480 1.26e-01 120 chr2R:7674650-7674770 1.00e-01 120 chr3L:21202285-21202405 7.79e-01 120 chr3R:19569175-19569295 1.09e-03 14_[+3(1.22e-05)]_98 chr3L:15637389-15637509 9.54e-01 120 chr3R:26956453-26956573 5.81e-01 120 chr2R:16802555-16802675 3.07e-01 120 chr3L:8827737-8827857 9.99e-01 120 chr2R:20977265-20977385 1.93e-01 120 chr2L:12504523-12504643 4.66e-02 46_[+2(2.78e-05)]_66 chr3R:10354609-10354729 6.20e-01 120 chr2R:11892386-11892506 3.16e-01 120 chr2R:13963920-13964040 3.85e-04 76_[+5(4.24e-05)]_36 chr2R:1515302-1515422 2.89e-01 120 chr3R:8306609-8306729 5.35e-01 120 chr2R:16047392-16047512 9.88e-01 120 chr3R:9868585-9868705 4.04e-01 120 chr3R:31463124-31463244 8.60e-01 120 chr3L:18820040-18820160 7.16e-01 120 chr2R:12201257-12201377 5.80e-01 120 chr2R:11452436-11452556 1.56e-03 120 chr2L:3867634-3867754 9.80e-01 120 chr3R:27205249-27205369 9.66e-04 89_[+3(1.22e-05)]_23 chr2R:12507457-12507577 9.99e-01 120 chr2L:8888814-8888934 9.98e-01 120 chr3R:19568976-19569096 6.58e-02 120 chr3L:7654502-7654622 5.39e-01 120 chr3R:12429266-12429386 9.83e-01 120 chrX:4104221-4104341 6.78e-01 120 chr2L:21683609-21683729 1.00e+00 120 chr2L:9912611-9912731 9.91e-01 120 chr2L:7827837-7827957 7.04e-01 120 chr3R:9258322-9258442 1.65e-04 23_[+3(2.94e-05)]_53_[+1(2.32e-05)]_\ 28 chr3L:3046927-3047047 9.97e-01 120 chr3R:28547159-28547279 4.98e-03 22_[+1(6.64e-06)]_90 chr3L:7869238-7869358 5.06e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************