******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/gsb-n.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:19198541-19198661 1.0000 120 chr3L:12290695-12290815 1.0000 120 chr2R:25042070-25042190 1.0000 120 chr3L:1915946-1916066 1.0000 120 chr3R:29375536-29375656 1.0000 120 chr2R:19940988-19941108 1.0000 120 chr2R:25053455-25053575 1.0000 120 chr3L:22429667-22429787 1.0000 120 chr3R:21538229-21538349 1.0000 120 chr3L:5884911-5885031 1.0000 120 chr2L:11414187-11414307 1.0000 120 chr3R:25078804-25078924 1.0000 120 chr3L:17357570-17357690 1.0000 120 chr2L:18355694-18355814 1.0000 120 chrX:779143-779263 1.0000 120 chr3R:15611279-15611399 1.0000 120 chr3L:14947744-14947864 1.0000 120 chrX:5532245-5532365 1.0000 120 chr3R:21452835-21452955 1.0000 120 chr2L:11414387-11414507 1.0000 120 chr4:85024-85144 1.0000 120 chrX:20732308-20732428 1.0000 120 chr2L:8843732-8843852 1.0000 120 chr3R:7138206-7138326 1.0000 120 chr2R:22246736-22246856 1.0000 120 chr2L:18928032-18928152 1.0000 120 chr3L:10840950-10841070 1.0000 120 chr3L:22129631-22129751 1.0000 120 chr3L:15289502-15289622 1.0000 120 chr2L:18934003-18934123 1.0000 120 chr2R:9200159-9200279 1.0000 120 chr3L:22490254-22490374 1.0000 120 chr2R:14792979-14793099 1.0000 120 chr2L:7591813-7591933 1.0000 120 chr2L:2188445-2188565 1.0000 120 chr2L:18367783-18367903 1.0000 120 chr3L:6118115-6118235 1.0000 120 chr2L:372402-372522 1.0000 120 chr3L:2393937-2394057 1.0000 120 chr3L:13200269-13200389 1.0000 120 chr3R:18260169-18260289 1.0000 120 chr3R:11692631-11692751 1.0000 120 chr2R:8208814-8208934 1.0000 120 chr3R:21544523-21544643 1.0000 120 chr2R:25057320-25057440 1.0000 120 chr2L:5934089-5934209 1.0000 120 chr3R:21426890-21427010 1.0000 120 chr2L:5468028-5468148 1.0000 120 chr2R:25052767-25052887 1.0000 120 chr2L:11294042-11294162 1.0000 120 chr2L:10549210-10549330 1.0000 120 chr2R:25068639-25068759 1.0000 120 chrX:5600144-5600264 1.0000 120 chr2L:21014650-21014770 1.0000 120 chr3L:19200597-19200717 1.0000 120 chr3L:13284432-13284552 1.0000 120 chr2L:5489357-5489477 1.0000 120 chr2L:675913-676033 1.0000 120 chr3L:18989824-18989944 1.0000 120 chr2L:1930668-1930788 1.0000 120 chr3L:12316249-12316369 1.0000 120 chrX:6618717-6618837 1.0000 120 chr2R:9981650-9981770 1.0000 120 chr2R:9701324-9701444 1.0000 120 chrX:9731643-9731763 1.0000 120 chr2R:22230582-22230702 1.0000 120 chr2L:6829885-6830005 1.0000 120 chr3R:30928023-30928143 1.0000 120 chr2R:11552112-11552232 1.0000 120 chr2L:19897183-19897303 1.0000 120 chr2R:6577393-6577513 1.0000 120 chr3L:12304319-12304439 1.0000 120 chr2R:22864357-22864477 1.0000 120 chr2R:25016156-25016276 1.0000 120 chr2R:18306939-18307059 1.0000 120 chr3R:25088840-25088960 1.0000 120 chr3R:8193228-8193348 1.0000 120 chr3R:22719089-22719209 1.0000 120 chrX:20648403-20648523 1.0000 120 chr2R:18316430-18316550 1.0000 120 chr3L:14089953-14090073 1.0000 120 chr3R:5096312-5096432 1.0000 120 chr3R:15576164-15576284 1.0000 120 chr2R:6790802-6790922 1.0000 120 chr3R:4977642-4977762 1.0000 120 chr3R:14369449-14369569 1.0000 120 chr3L:12289917-12290037 1.0000 120 chr3R:29205343-29205463 1.0000 120 chr3L:22142981-22143101 1.0000 120 chr3R:30917403-30917523 1.0000 120 chr2R:25066511-25066631 1.0000 120 chr2R:9197274-9197394 1.0000 120 chr3R:30759113-30759233 1.0000 120 chr2L:3845591-3845711 1.0000 120 chr3L:15021068-15021188 1.0000 120 chr2R:25043052-25043172 1.0000 120 chr2R:23882920-23883040 1.0000 120 chr3L:14949951-14950071 1.0000 120 chr3L:8540329-8540449 1.0000 120 chr3R:15513405-15513525 1.0000 120 chr3L:20794032-20794152 1.0000 120 chr3L:21296381-21296501 1.0000 120 chr3L:2855772-2855892 1.0000 120 chr3L:7714813-7714933 1.0000 120 chrX:3084983-3085103 1.0000 120 chr2L:6216219-6216339 1.0000 120 chrX:9701961-9702081 1.0000 120 chr3L:12723457-12723577 1.0000 120 chr2L:3821528-3821648 1.0000 120 chr2L:8871835-8871955 1.0000 120 chr2L:12672426-12672546 1.0000 120 chr3R:21340014-21340134 1.0000 120 chr2L:14218948-14219068 1.0000 120 chr3L:4083579-4083699 1.0000 120 chr3L:5885110-5885230 1.0000 120 chr3L:16306117-16306237 1.0000 120 chr2L:14477998-14478118 1.0000 120 chr3R:5105467-5105587 1.0000 120 chr3L:6387869-6387989 1.0000 120 chr3L:3882645-3882765 1.0000 120 chr2L:19902839-19902959 1.0000 120 chr2L:3557050-3557170 1.0000 120 chr3L:6104674-6104794 1.0000 120 chr2R:18341499-18341619 1.0000 120 chr3R:29562659-29562779 1.0000 120 chrX:9130391-9130511 1.0000 120 chr2L:16358001-16358121 1.0000 120 chrX:18530993-18531113 1.0000 120 chrX:20724411-20724531 1.0000 120 chr2L:14450324-14450444 1.0000 120 chr2R:25058169-25058289 1.0000 120 chr2L:7127257-7127377 1.0000 120 chr4:704415-704535 1.0000 120 chr2R:16611212-16611332 1.0000 120 chr2L:6316863-6316983 1.0000 120 chr3L:15664543-15664663 1.0000 120 chr2L:14479032-14479152 1.0000 120 chr3L:17359348-17359468 1.0000 120 chr2R:25168673-25168793 1.0000 120 chr2L:7265015-7265135 1.0000 120 chr3L:1390585-1390705 1.0000 120 chr2L:3840714-3840834 1.0000 120 chr3R:25368007-25368127 1.0000 120 chr2L:12681801-12681921 1.0000 120 chr2R:25058375-25058495 1.0000 120 chr3R:16081348-16081468 1.0000 120 chr3R:30710578-30710698 1.0000 120 chrX:20555310-20555430 1.0000 120 chrX:9127978-9128098 1.0000 120 chr3R:7138406-7138526 1.0000 120 chr3R:16153630-16153750 1.0000 120 chr2L:5431842-5431962 1.0000 120 chr3R:5117892-5118012 1.0000 120 chr2R:22506886-22507006 1.0000 120 chr3R:10571322-10571442 1.0000 120 chr2L:18809647-18809767 1.0000 120 chr2R:6591037-6591157 1.0000 120 chr2L:1967407-1967527 1.0000 120 chr2L:17768696-17768816 1.0000 120 chr3R:10651580-10651700 1.0000 120 chr3L:20643880-20644000 1.0000 120 chr3R:10652504-10652624 1.0000 120 chrX:20757072-20757192 1.0000 120 chr2L:18371021-18371141 1.0000 120 chr2R:16615202-16615322 1.0000 120 chr3R:21427738-21427858 1.0000 120 chr3R:15672420-15672540 1.0000 120 chrX:14846367-14846487 1.0000 120 chr3L:12727452-12727572 1.0000 120 chr2L:14454297-14454417 1.0000 120 chr3L:9052401-9052521 1.0000 120 chr2R:21898122-21898242 1.0000 120 chr2L:7545644-7545764 1.0000 120 chr3L:6103205-6103325 1.0000 120 chr2R:21029370-21029490 1.0000 120 chr3L:7987839-7987959 1.0000 120 chr3L:18430536-18430656 1.0000 120 chr2L:17586879-17586999 1.0000 120 chr3R:10557922-10558042 1.0000 120 chr2L:10590707-10590827 1.0000 120 chr2L:19235756-19235876 1.0000 120 chr2R:20050343-20050463 1.0000 120 chr2R:11404150-11404270 1.0000 120 chr2R:6543726-6543846 1.0000 120 chr2R:11511716-11511836 1.0000 120 chr2L:17589250-17589370 1.0000 120 chr2R:5741585-5741705 1.0000 120 chr3L:3708076-3708196 1.0000 120 chrX:20666372-20666492 1.0000 120 chr2L:5503988-5504108 1.0000 120 chr3R:16749839-16749959 1.0000 120 chrX:5551500-5551620 1.0000 120 chr2L:11474559-11474679 1.0000 120 chr3L:14578203-14578323 1.0000 120 chr2L:3846511-3846631 1.0000 120 chr2L:14265459-14265579 1.0000 120 chr2L:14539427-14539547 1.0000 120 chr3R:23309826-23309946 1.0000 120 chr2L:1435657-1435777 1.0000 120 chrX:19014760-19014880 1.0000 120 chr3L:15047666-15047786 1.0000 120 chrX:19015438-19015558 1.0000 120 chr2R:23576003-23576123 1.0000 120 chrX:6968720-6968840 1.0000 120 chr2R:23037312-23037432 1.0000 120 chr2L:1007987-1008107 1.0000 120 chr3L:8456677-8456797 1.0000 120 chr2R:25061846-25061966 1.0000 120 chr3R:24090283-24090403 1.0000 120 chr3R:22717764-22717884 1.0000 120 chr3L:5980957-5981077 1.0000 120 chr3R:29583408-29583528 1.0000 120 chr3R:29541122-29541242 1.0000 120 chr3R:14676072-14676192 1.0000 120 chr2R:18607046-18607166 1.0000 120 chr2L:3571708-3571828 1.0000 120 chr3R:5095285-5095405 1.0000 120 chr3L:11342025-11342145 1.0000 120 chr2L:8288232-8288352 1.0000 120 chr2L:1557136-1557256 1.0000 120 chr2R:8024547-8024667 1.0000 120 chr2R:13561692-13561812 1.0000 120 chr2R:5736733-5736853 1.0000 120 chr3L:14055832-14055952 1.0000 120 chr2R:13564304-13564424 1.0000 120 chr3R:5102559-5102679 1.0000 120 chr2R:25045096-25045216 1.0000 120 chr3L:14655781-14655901 1.0000 120 chr2L:1407439-1407559 1.0000 120 chr2L:14578283-14578403 1.0000 120 chr3L:4396500-4396620 1.0000 120 chr3L:645423-645543 1.0000 120 chr3L:10845908-10846028 1.0000 120 chr3L:15758988-15759108 1.0000 120 chr2R:6593052-6593172 1.0000 120 chr3L:12085499-12085619 1.0000 120 chr2R:12917076-12917196 1.0000 120 chr3R:10111301-10111421 1.0000 120 chr2R:25068841-25068961 1.0000 120 chr2L:6228704-6228824 1.0000 120 chr2L:19163475-19163595 1.0000 120 chr2L:15429854-15429974 1.0000 120 chr3L:12150742-12150862 1.0000 120 chr3R:16152361-16152481 1.0000 120 chr2R:16156747-16156867 1.0000 120 chr2L:8884240-8884360 1.0000 120 chr3R:4346781-4346901 1.0000 120 chr3L:10392170-10392290 1.0000 120 chr2L:13869562-13869682 1.0000 120 chrX:17330981-17331101 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_gsb-n/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/gsb-n.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.225 G 0.232 T 0.27 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.225 G 0.232 T 0.27 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGCGTGAA MEME-1 width = 8 sites = 19 llr = 185 E-value = 2.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:::::a7 pos.-specific C ::a::::2 probability G 6a:a:a:1 matrix T ::::a::: bits 2.2 *** * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (14.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGTGAA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6228704-6228824 105 1.30e-05 CGGGGTCTGC GGCGTGAA ATCGTGTT chr2R:21029370-21029490 24 1.30e-05 AATGTTGAAG GGCGTGAA TGAATAGCAT chr3L:15664543-15664663 79 1.30e-05 CACAGACGGT GGCGTGAA ATTTCGAAAC chr3R:29205343-29205463 10 1.30e-05 TTTTCGACT GGCGTGAA ATTTTCATAA chr2L:5489357-5489477 109 1.30e-05 TAAAGTATTG GGCGTGAA ATTG chr2R:25068639-25068759 105 1.30e-05 CGCGCAAATT GGCGTGAA GCGTGCAG chr3R:25078804-25078924 92 1.30e-05 GTAATTGTTG GGCGTGAA ATTTGTTGTG chr3R:21538229-21538349 41 1.30e-05 GGCATGCTGC GGCGTGAA TTACGGCTCC chr3L:5980957-5981077 60 2.83e-05 CTCGCAGCCT AGCGTGAA AAACTGAAAA chr3R:10651580-10651700 71 2.83e-05 GAAATTGAAA AGCGTGAA AATGCAGTGG chr3L:17359348-17359468 18 2.83e-05 CTCGCAGCGA AGCGTGAA AAATGCTCGT chr2R:22864357-22864477 55 2.83e-05 GGATAAATCG AGCGTGAA ATATTCCAGC chr2R:25053455-25053575 29 2.83e-05 TAGAGAATTA AGCGTGAA GTTTACGCAT chr3R:5095285-5095405 36 3.91e-05 GGGAGAAGGG GGCGTGAC GGGGCTGGAT chr3L:10392170-10392290 75 5.17e-05 ATAAAGTAGC AGCGTGAC CAAATCAGAT chr2R:18607046-18607166 62 5.17e-05 ACATCGGCGA AGCGTGAC AGATTCTCTG chr3R:30759113-30759233 85 5.17e-05 GGGAACACCG AGCGTGAC AGATTAGCGC chr2L:10590707-10590827 105 6.28e-05 tgagacagaa ggcgtgag tgagtgag chr2R:23882920-23883040 111 6.28e-05 ACCCCTGAAG GGCGTGAG GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6228704-6228824 1.3e-05 104_[+1]_8 chr2R:21029370-21029490 1.3e-05 23_[+1]_89 chr3L:15664543-15664663 1.3e-05 78_[+1]_34 chr3R:29205343-29205463 1.3e-05 9_[+1]_103 chr2L:5489357-5489477 1.3e-05 108_[+1]_4 chr2R:25068639-25068759 1.3e-05 104_[+1]_8 chr3R:25078804-25078924 1.3e-05 91_[+1]_21 chr3R:21538229-21538349 1.3e-05 40_[+1]_72 chr3L:5980957-5981077 2.8e-05 59_[+1]_53 chr3R:10651580-10651700 2.8e-05 70_[+1]_42 chr3L:17359348-17359468 2.8e-05 17_[+1]_95 chr2R:22864357-22864477 2.8e-05 54_[+1]_58 chr2R:25053455-25053575 2.8e-05 28_[+1]_84 chr3R:5095285-5095405 3.9e-05 35_[+1]_77 chr3L:10392170-10392290 5.2e-05 74_[+1]_38 chr2R:18607046-18607166 5.2e-05 61_[+1]_51 chr3R:30759113-30759233 5.2e-05 84_[+1]_28 chr2L:10590707-10590827 6.3e-05 104_[+1]_8 chr2R:23882920-23883040 6.3e-05 110_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCGTGAA width=8 seqs=19 chr2L:6228704-6228824 ( 105) GGCGTGAA 1 chr2R:21029370-21029490 ( 24) GGCGTGAA 1 chr3L:15664543-15664663 ( 79) GGCGTGAA 1 chr3R:29205343-29205463 ( 10) GGCGTGAA 1 chr2L:5489357-5489477 ( 109) GGCGTGAA 1 chr2R:25068639-25068759 ( 105) GGCGTGAA 1 chr3R:25078804-25078924 ( 92) GGCGTGAA 1 chr3R:21538229-21538349 ( 41) GGCGTGAA 1 chr3L:5980957-5981077 ( 60) AGCGTGAA 1 chr3R:10651580-10651700 ( 71) AGCGTGAA 1 chr3L:17359348-17359468 ( 18) AGCGTGAA 1 chr2R:22864357-22864477 ( 55) AGCGTGAA 1 chr2R:25053455-25053575 ( 29) AGCGTGAA 1 chr3R:5095285-5095405 ( 36) GGCGTGAC 1 chr3L:10392170-10392290 ( 75) AGCGTGAC 1 chr2R:18607046-18607166 ( 62) AGCGTGAC 1 chr3R:30759113-30759233 ( 85) AGCGTGAC 1 chr2L:10590707-10590827 ( 105) GGCGTGAG 1 chr2R:23882920-23883040 ( 111) GGCGTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 2.1e+001 63 -1089 132 -1089 -1089 -1089 211 -1089 -1089 215 -1089 -1089 -1089 -1089 211 -1089 -1089 -1089 -1089 189 -1089 -1089 211 -1089 188 -1089 -1089 -1089 133 -10 -114 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.1e+001 0.421053 0.000000 0.578947 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.684211 0.210526 0.105263 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCGTGAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GCGTGA[AC] -------------------------------------------------------------------------------- Time 7.40 secs. ******************************************************************************** ******************************************************************************** MOTIF DCRAWTBG MEME-2 width = 8 sites = 70 llr = 523 E-value = 6.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:6a5::: pos.-specific C :a::::4: probability G 3:4:::2a matrix T 4:::5a4: bits 2.2 * * 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * * Entropy 1.1 *** * * (10.8 bits) 0.9 ***** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCAAATCG consensus A G T T sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13869562-13869682 104 1.71e-05 CAGTTGCCAC TCAATTCG ACACGCAAG chr2L:17768696-17768816 67 1.71e-05 CGTCATCGAT TCAATTCG ACGGGGTCGA chr2L:3821528-3821648 95 1.71e-05 GCGTGACGAA TCAATTCG GTTCTGGCTG chr3L:14949951-14950071 72 1.71e-05 GTGCAACGAA TCAATTCG AAACGAGAAA chr3L:15289502-15289622 59 1.71e-05 TAATGCATTA TCAATTCG TTAGGGTTGA chr2R:16615202-16615322 91 8.08e-05 TCAATTCAGT TCGATTCG ATGTGGTCCG chr3R:16153630-16153750 47 8.08e-05 CCCTTCGACC GCAATTCG CTGCGGCTGC chr2R:25058169-25058289 75 8.08e-05 TGAAATTGTA TCAAATCG ATTTTGAGAT chr2L:14218948-14219068 109 8.08e-05 TATGCGCGTT TCGATTCG AGAC chrX:6618717-6618837 43 8.08e-05 TATCGGCTGC GCAATTCG TTTGGGCCAT chr3L:19200597-19200717 54 8.08e-05 TAAAGAAAAA ACAATTCG ATTTGAATGC chrX:5532245-5532365 67 8.08e-05 TTCTGGTCCA TCAAATCG TTTAGTTCTG chr3L:14947744-14947864 88 8.08e-05 ttggaaccaa tcgattcg aagcgaTCCG chr2L:19198541-19198661 23 8.08e-05 CACGGCGAAT GCAATTCG CTCTGCGTTC chr2R:12917076-12917196 5 1.55e-04 AATG ACAAATCG CAGGGTTGTT chr3R:5095285-5095405 96 1.55e-04 ccaaatcgaa tcgaatcg catcgagtgg chr3R:14676072-14676192 28 1.55e-04 AAAAATCGAA TCGAATCG AATGTGTGGC chr2L:1967407-1967527 54 1.55e-04 AGCACCCAAA TCGAATCG CACCGACAAA chr3R:10571322-10571442 60 1.55e-04 AGGGGGCGCA ACAAATCG GATTAACTCC chrX:20555310-20555430 53 1.55e-04 CGCTTGGTGA ACAAATCG GTTTCGATAC chr3L:12304319-12304439 101 1.55e-04 TTAACAATTT ACAAATCG ATGTTTAAAG chrX:9731643-9731763 33 1.55e-04 GGAACGGGAT ACAAATCG ATTGGACGCG chr2R:22246736-22246856 55 1.55e-04 CGGCCGCGCA TCGAATCG CAGCTCCAAT chrX:779143-779263 77 1.55e-04 GAGAACCGCA TCGAATCG CTAACATTTC chr3R:5102559-5102679 56 1.82e-04 GCTGCCGATA ACGAATCG CGTAATGAGT chr2L:8288232-8288352 51 1.82e-04 GAGCCGCGTA ACGAATCG GGCAAGATAT chr3L:8540329-8540449 55 1.82e-04 CATGTCGCAC ACGAATCG AATGGGCAAA chr2R:9701324-9701444 61 1.82e-04 GACGGGCATG GCGAATCG GAAAACTGGT chr2L:2188445-2188565 48 1.82e-04 GCGATGCGAC ACGAATCG GATCCCCTGT chr3L:12290695-12290815 10 1.82e-04 CTACGCATG ACGAATCG GCATTTTACG chr3L:3708076-3708196 75 2.03e-04 ATTTGTAATT TCAATTTG TCTAATAGGA chr2R:9197274-9197394 24 2.03e-04 CGTGCCGCAA TCAATTTG CCAGCGAAGC chr3L:12150742-12150862 46 2.79e-04 ACACCGGCTT GCAATTTG GCGCGCTGAG chr2L:3571708-3571828 85 2.79e-04 AACGGGGGAA GCAATTTG TCCCCTTTCA chr3R:24090283-24090403 70 2.79e-04 AAGTCGTTAA ACAATTTG ATACGGCCTG chr2L:10590707-10590827 65 2.79e-04 TTTGCATACT GCAATTTG TTCCGCTCTT chr2L:5431842-5431962 24 2.79e-04 ATTTAGCGGA ACAATTTG TCAGTGCGGT chr3L:7714813-7714933 41 2.79e-04 AAATTGCATT TCAAATTG CATCGTGACC chr2L:6829885-6830005 41 2.79e-04 TAGAATGTTG TCAAATTG TTATTCTTTT chrX:5600144-5600264 3 2.79e-04 CA GCAATTTG CAACGCTACA chr2R:25057320-25057440 13 2.79e-04 GTGCCAATGA TCGATTTG ACACGCCAAC chr2L:19163475-19163595 94 3.68e-04 ATAATCTTGT ACAAATTG TTTTGCATTA chr2R:23576003-23576123 21 3.68e-04 CCATTTGAAT TCGAATTG TGCCCTCAGA chrX:9127978-9128098 60 3.68e-04 TGGGTGCGTG ACAAATTG TTATGACTCG chr3R:25368007-25368127 75 3.68e-04 GAAACAAATT GCAAATTG GCAGCTGGGA chr2L:14479032-14479152 4 3.68e-04 CTA ACGATTTG GGTGGTTGGT chr2L:14450324-14450444 68 3.68e-04 CGGCAGCGTA ACAAATTG TGAGTGCTTC chr3L:2855772-2855892 22 3.68e-04 GCGTCATCCG ACGATTTG TTACACGTAA chr3L:12289917-12290037 95 3.68e-04 ACATATTGTG ACAAATTG CACAAACTTG chr3L:22490254-22490374 85 3.68e-04 AAATTTAAAT GCGATTTG TTACGGTTTT chr3L:5884911-5885031 91 3.68e-04 ATGAGCCACA TCGAATTG CGTTGATTTA chr3L:14055832-14055952 67 4.19e-04 GGCAATTAAA GCGAATTG ATCGATTGTC chr3R:10652504-10652624 47 4.19e-04 GGAATGCGCA GCGAATTG CACGAAACGA chr2L:7127257-7127377 55 4.19e-04 TAAACACAAA TCAATTGG TGCGGGGACC chrX:9701961-9702081 19 4.19e-04 AAAAAGCGTT GCGAATTG ATTAAGTTTT chr2L:11414387-11414507 42 4.19e-04 TGAAGGCAGT TCAATTGG TTCCGCGATA chr3R:15611279-15611399 30 4.19e-04 ACAAACCGCA GCGAATTG CTAAACACGT chr3L:8456677-8456797 7 4.85e-04 ATTCAC TCAAATGG GCGCtatatg chrX:6968720-6968840 54 4.85e-04 AATTACTCCG ACAATTGG TCACACATTC chr2L:17586879-17586999 46 4.85e-04 CTGGCCATTT ACAATTGG TCCGCAGTGC chr3R:10651580-10651700 45 4.85e-04 ATTATGAATT TCGATTGG GCTATGTGGA chr3R:16081348-16081468 95 4.85e-04 TTCATTGCCA GCAATTGG ACATGCCCTG chr2R:19940988-19941108 86 4.85e-04 CGAGGCATGC ACAATTGG GCGTTGTAAT chr3L:11342025-11342145 108 5.61e-04 TTGTTTATAA ACGATTGG ACAAG chrX:5551500-5551620 17 5.61e-04 GATGTGAATT GCGATTGG TTTCGCTTCA chr2L:17589250-17589370 45 5.61e-04 AAAGAGACGG GCGATTGG AAAGCATAGG chr2R:11511716-11511836 82 5.61e-04 TGGCCTAAAC GCGATTGG TCACGCATGT chr3L:9052401-9052521 89 5.61e-04 CAATTACTCG GCAAATGG AAATCAAAGC chrX:20724411-20724531 15 5.61e-04 aaccgtaaat gcaaatgg aaatGCTGTC chr2R:25043052-25043172 100 5.89e-04 TTAAATTTAA ACGAATGG ATATGAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13869562-13869682 1.7e-05 103_[+2]_9 chr2L:17768696-17768816 1.7e-05 66_[+2]_46 chr2L:3821528-3821648 1.7e-05 94_[+2]_18 chr3L:14949951-14950071 1.7e-05 71_[+2]_41 chr3L:15289502-15289622 1.7e-05 58_[+2]_54 chr2R:16615202-16615322 8.1e-05 90_[+2]_22 chr3R:16153630-16153750 8.1e-05 46_[+2]_66 chr2R:25058169-25058289 8.1e-05 74_[+2]_38 chr2L:14218948-14219068 8.1e-05 108_[+2]_4 chrX:6618717-6618837 8.1e-05 42_[+2]_70 chr3L:19200597-19200717 8.1e-05 53_[+2]_59 chrX:5532245-5532365 8.1e-05 66_[+2]_46 chr3L:14947744-14947864 8.1e-05 87_[+2]_25 chr2L:19198541-19198661 8.1e-05 22_[+2]_90 chr2R:12917076-12917196 0.00015 4_[+2]_108 chr3R:5095285-5095405 0.00015 95_[+2]_17 chr3R:14676072-14676192 0.00015 27_[+2]_85 chr2L:1967407-1967527 0.00015 53_[+2]_59 chr3R:10571322-10571442 0.00015 59_[+2]_53 chrX:20555310-20555430 0.00015 52_[+2]_60 chr3L:12304319-12304439 0.00015 100_[+2]_12 chrX:9731643-9731763 0.00015 32_[+2]_80 chr2R:22246736-22246856 0.00015 54_[+2]_58 chrX:779143-779263 0.00015 76_[+2]_36 chr3R:5102559-5102679 0.00018 55_[+2]_57 chr2L:8288232-8288352 0.00018 50_[+2]_62 chr3L:8540329-8540449 0.00018 54_[+2]_58 chr2R:9701324-9701444 0.00018 60_[+2]_52 chr2L:2188445-2188565 0.00018 47_[+2]_65 chr3L:12290695-12290815 0.00018 9_[+2]_103 chr3L:3708076-3708196 0.0002 74_[+2]_38 chr2R:9197274-9197394 0.0002 23_[+2]_89 chr3L:12150742-12150862 0.00028 45_[+2]_67 chr2L:3571708-3571828 0.00028 84_[+2]_28 chr3R:24090283-24090403 0.00028 69_[+2]_43 chr2L:10590707-10590827 0.00028 64_[+2]_48 chr2L:5431842-5431962 0.00028 23_[+2]_89 chr3L:7714813-7714933 0.00028 40_[+2]_72 chr2L:6829885-6830005 0.00028 40_[+2]_72 chrX:5600144-5600264 0.00028 2_[+2]_110 chr2R:25057320-25057440 0.00028 12_[+2]_100 chr2L:19163475-19163595 0.00037 93_[+2]_19 chr2R:23576003-23576123 0.00037 20_[+2]_92 chrX:9127978-9128098 0.00037 59_[+2]_53 chr3R:25368007-25368127 0.00037 74_[+2]_38 chr2L:14479032-14479152 0.00037 3_[+2]_109 chr2L:14450324-14450444 0.00037 67_[+2]_45 chr3L:2855772-2855892 0.00037 21_[+2]_91 chr3L:12289917-12290037 0.00037 94_[+2]_18 chr3L:22490254-22490374 0.00037 84_[+2]_28 chr3L:5884911-5885031 0.00037 90_[+2]_22 chr3L:14055832-14055952 0.00042 66_[+2]_46 chr3R:10652504-10652624 0.00042 46_[+2]_66 chr2L:7127257-7127377 0.00042 54_[+2]_58 chrX:9701961-9702081 0.00042 18_[+2]_94 chr2L:11414387-11414507 0.00042 41_[+2]_71 chr3R:15611279-15611399 0.00042 29_[+2]_83 chr3L:8456677-8456797 0.00048 6_[+2]_106 chrX:6968720-6968840 0.00048 53_[+2]_59 chr2L:17586879-17586999 0.00048 45_[+2]_67 chr3R:10651580-10651700 0.00048 44_[+2]_68 chr3R:16081348-16081468 0.00048 94_[+2]_18 chr2R:19940988-19941108 0.00048 85_[+2]_27 chr3L:11342025-11342145 0.00056 107_[+2]_5 chrX:5551500-5551620 0.00056 16_[+2]_96 chr2L:17589250-17589370 0.00056 44_[+2]_68 chr2R:11511716-11511836 0.00056 81_[+2]_31 chr3L:9052401-9052521 0.00056 88_[+2]_24 chrX:20724411-20724531 0.00056 14_[+2]_98 chr2R:25043052-25043172 0.00059 99_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DCRAWTBG width=8 seqs=70 chr2L:13869562-13869682 ( 104) TCAATTCG 1 chr2L:17768696-17768816 ( 67) TCAATTCG 1 chr2L:3821528-3821648 ( 95) TCAATTCG 1 chr3L:14949951-14950071 ( 72) TCAATTCG 1 chr3L:15289502-15289622 ( 59) TCAATTCG 1 chr2R:16615202-16615322 ( 91) TCGATTCG 1 chr3R:16153630-16153750 ( 47) GCAATTCG 1 chr2R:25058169-25058289 ( 75) TCAAATCG 1 chr2L:14218948-14219068 ( 109) TCGATTCG 1 chrX:6618717-6618837 ( 43) GCAATTCG 1 chr3L:19200597-19200717 ( 54) ACAATTCG 1 chrX:5532245-5532365 ( 67) TCAAATCG 1 chr3L:14947744-14947864 ( 88) TCGATTCG 1 chr2L:19198541-19198661 ( 23) GCAATTCG 1 chr2R:12917076-12917196 ( 5) ACAAATCG 1 chr3R:5095285-5095405 ( 96) TCGAATCG 1 chr3R:14676072-14676192 ( 28) TCGAATCG 1 chr2L:1967407-1967527 ( 54) TCGAATCG 1 chr3R:10571322-10571442 ( 60) ACAAATCG 1 chrX:20555310-20555430 ( 53) ACAAATCG 1 chr3L:12304319-12304439 ( 101) ACAAATCG 1 chrX:9731643-9731763 ( 33) ACAAATCG 1 chr2R:22246736-22246856 ( 55) TCGAATCG 1 chrX:779143-779263 ( 77) TCGAATCG 1 chr3R:5102559-5102679 ( 56) ACGAATCG 1 chr2L:8288232-8288352 ( 51) ACGAATCG 1 chr3L:8540329-8540449 ( 55) ACGAATCG 1 chr2R:9701324-9701444 ( 61) GCGAATCG 1 chr2L:2188445-2188565 ( 48) ACGAATCG 1 chr3L:12290695-12290815 ( 10) ACGAATCG 1 chr3L:3708076-3708196 ( 75) TCAATTTG 1 chr2R:9197274-9197394 ( 24) TCAATTTG 1 chr3L:12150742-12150862 ( 46) GCAATTTG 1 chr2L:3571708-3571828 ( 85) GCAATTTG 1 chr3R:24090283-24090403 ( 70) ACAATTTG 1 chr2L:10590707-10590827 ( 65) GCAATTTG 1 chr2L:5431842-5431962 ( 24) ACAATTTG 1 chr3L:7714813-7714933 ( 41) TCAAATTG 1 chr2L:6829885-6830005 ( 41) TCAAATTG 1 chrX:5600144-5600264 ( 3) GCAATTTG 1 chr2R:25057320-25057440 ( 13) TCGATTTG 1 chr2L:19163475-19163595 ( 94) ACAAATTG 1 chr2R:23576003-23576123 ( 21) TCGAATTG 1 chrX:9127978-9128098 ( 60) ACAAATTG 1 chr3R:25368007-25368127 ( 75) GCAAATTG 1 chr2L:14479032-14479152 ( 4) ACGATTTG 1 chr2L:14450324-14450444 ( 68) ACAAATTG 1 chr3L:2855772-2855892 ( 22) ACGATTTG 1 chr3L:12289917-12290037 ( 95) ACAAATTG 1 chr3L:22490254-22490374 ( 85) GCGATTTG 1 chr3L:5884911-5885031 ( 91) TCGAATTG 1 chr3L:14055832-14055952 ( 67) GCGAATTG 1 chr3R:10652504-10652624 ( 47) GCGAATTG 1 chr2L:7127257-7127377 ( 55) TCAATTGG 1 chrX:9701961-9702081 ( 19) GCGAATTG 1 chr2L:11414387-11414507 ( 42) TCAATTGG 1 chr3R:15611279-15611399 ( 30) GCGAATTG 1 chr3L:8456677-8456797 ( 7) TCAAATGG 1 chrX:6968720-6968840 ( 54) ACAATTGG 1 chr2L:17586879-17586999 ( 46) ACAATTGG 1 chr3R:10651580-10651700 ( 45) TCGATTGG 1 chr3R:16081348-16081468 ( 95) GCAATTGG 1 chr2R:19940988-19941108 ( 86) ACAATTGG 1 chr3L:11342025-11342145 ( 108) ACGATTGG 1 chrX:5551500-5551620 ( 17) GCGATTGG 1 chr2L:17589250-17589370 ( 45) GCGATTGG 1 chr2R:11511716-11511836 ( 82) GCGATTGG 1 chr3L:9052401-9052521 ( 89) GCAAATGG 1 chrX:20724411-20724531 ( 15) GCAAATGG 1 chr2R:25043052-25043172 ( 100) ACGAATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.47651 E= 6.3e-001 33 -1277 30 46 -1277 215 -1277 -1277 107 -1277 89 -1277 188 -1277 -1277 -1277 88 -1277 -1277 89 -1277 -1277 -1277 189 -1277 93 -11 40 -1277 -1277 211 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 6.3e-001 0.342857 0.000000 0.285714 0.371429 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.214286 0.357143 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DCRAWTBG MEME-2 regular expression -------------------------------------------------------------------------------- [TAG]C[AG]A[AT]T[CTG]G -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACCCCC MEME-3 width = 8 sites = 15 llr = 149 E-value = 6.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a8::::: pos.-specific C a:2aaa78 probability G :::::::: matrix T ::::::32 bits 2.2 * *** 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 ******** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAACCCCC consensus C TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12917076-12917196 106 9.60e-06 TCAGCAATTG CAACCCCC TGCTCGT chr3L:15047666-15047786 12 9.60e-06 AGAATCGGAA CAACCCCC GGGTTCCGGC chr2L:6316863-6316983 61 9.60e-06 CCGGAGCACC CAACCCCC GAATTACCGA chr3L:6104674-6104794 96 9.60e-06 CTCGGCAGGA CAACCCCC GAGCGCATCC chr3L:3882645-3882765 111 9.60e-06 CAGCGGAACC CAACCCCC CT chr3L:15758988-15759108 47 2.91e-05 GACAGACAGA CACCCCCC TTGGAGTGAC chr3R:29583408-29583528 70 2.91e-05 GGGTGGTTAA CACCCCCC TTATAAAGGG chr3L:6103205-6103325 99 2.91e-05 TGTGAAGTGA CAACCCTC GCGATTATGT chr3R:15672420-15672540 33 2.91e-05 TTATGCAACC CAACCCTC TCCGCAGTGC chr2R:22864357-22864477 19 2.91e-05 CTGTTTGTCC CAACCCTC TGGTACAAAA chr2R:22230582-22230702 32 2.91e-05 CCTGACGCCG CACCCCCC GTAGCATCCA chr3L:13200269-13200389 90 2.91e-05 TTCTAATTTC CAACCCTC GACTTTTGGT chr2L:1967407-1967527 31 4.06e-05 CTGCATGCAG CAACCCCT TGCCAAGCAC chrX:9130391-9130511 93 4.06e-05 GCCCAGCCTG CAACCCCT AAGAACTTTT chr2L:5489357-5489477 14 4.06e-05 GCTCGAAACC CAACCCCT TGTCCCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12917076-12917196 9.6e-06 105_[+3]_7 chr3L:15047666-15047786 9.6e-06 11_[+3]_101 chr2L:6316863-6316983 9.6e-06 60_[+3]_52 chr3L:6104674-6104794 9.6e-06 95_[+3]_17 chr3L:3882645-3882765 9.6e-06 110_[+3]_2 chr3L:15758988-15759108 2.9e-05 46_[+3]_66 chr3R:29583408-29583528 2.9e-05 69_[+3]_43 chr3L:6103205-6103325 2.9e-05 98_[+3]_14 chr3R:15672420-15672540 2.9e-05 32_[+3]_80 chr2R:22864357-22864477 2.9e-05 18_[+3]_94 chr2R:22230582-22230702 2.9e-05 31_[+3]_81 chr3L:13200269-13200389 2.9e-05 89_[+3]_23 chr2L:1967407-1967527 4.1e-05 30_[+3]_82 chrX:9130391-9130511 4.1e-05 92_[+3]_20 chr2L:5489357-5489477 4.1e-05 13_[+3]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACCCCC width=8 seqs=15 chr2R:12917076-12917196 ( 106) CAACCCCC 1 chr3L:15047666-15047786 ( 12) CAACCCCC 1 chr2L:6316863-6316983 ( 61) CAACCCCC 1 chr3L:6104674-6104794 ( 96) CAACCCCC 1 chr3L:3882645-3882765 ( 111) CAACCCCC 1 chr3L:15758988-15759108 ( 47) CACCCCCC 1 chr3R:29583408-29583528 ( 70) CACCCCCC 1 chr3L:6103205-6103325 ( 99) CAACCCTC 1 chr3R:15672420-15672540 ( 33) CAACCCTC 1 chr2R:22864357-22864477 ( 19) CAACCCTC 1 chr2R:22230582-22230702 ( 32) CACCCCCC 1 chr3L:13200269-13200389 ( 90) CAACCCTC 1 chr2L:1967407-1967527 ( 31) CAACCCCT 1 chrX:9130391-9130511 ( 93) CAACCCCT 1 chr2L:5489357-5489477 ( 14) CAACCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 6.1e+002 -1055 215 -1055 -1055 187 -1055 -1055 -1055 155 -17 -1055 -1055 -1055 215 -1055 -1055 -1055 215 -1055 -1055 -1055 215 -1055 -1055 -1055 170 -1055 -2 -1055 183 -1055 -43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.1e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.733333 0.000000 0.266667 0.000000 0.800000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACCCCC MEME-3 regular expression -------------------------------------------------------------------------------- CA[AC]CCC[CT][CT] -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** MOTIF AAYNAAWT MEME-4 width = 8 sites = 60 llr = 473 E-value = 5.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:3aa4: pos.-specific C ::63:::: probability G :::2:::: matrix T ::53::6a bits 2.2 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 *** ** * (11.4 bits) 0.9 *** **** 0.6 *** **** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel AACTAATT consensus TA A sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5102559-5102679 11 2.02e-05 GCTTAAATAA AACCAATT GAAGCGTAAA chr3L:14089953-14090073 72 2.02e-05 AATAAGCCGC AACCAATT CGTGGCAAAT chr3L:645423-645543 10 4.44e-05 CCAACAGAC AACTAATT AAATTTTCTA chrX:19015438-19015558 71 4.44e-05 GCCGAGGCGC AACTAATT TGCCTCGGGT chr2R:22506886-22507006 77 4.44e-05 TAAGTCCCGC AACTAATT CCGCAAAGTC chr2R:25168673-25168793 69 4.44e-05 CTTGATGCGG AACTAATT AACATTATAC chr3R:7138206-7138326 11 4.44e-05 GCCTAAGTGT AACTAATT AGAATTTTCA chr3R:21538229-21538349 14 4.44e-05 GCCGGGCCAT AACTAATT TTATAATTAG chr3L:12290695-12290815 106 4.44e-05 AACCGAGCGG AACTAATT TCGAGAC chr3L:10845908-10846028 54 8.97e-05 TCTATTAGCA AACAAATT TACTGAAAAC chr3R:23309826-23309946 92 8.97e-05 AGACAATCGA AACGAATT AAGAAAACCA chr3L:18430536-18430656 88 8.97e-05 TCAAGCCCGC AACGAATT TGCGCAATCA chr3L:12727452-12727572 38 8.97e-05 AACCACATCG AACGAATT AACTCGCAGT chr3R:25368007-25368127 67 8.97e-05 GCAAATGCGA AACAAATT GCAAATTGGC chr3L:15664543-15664663 94 8.97e-05 GAAATTTCGA AACGAATT CTCTAAACTC chr2L:7127257-7127377 75 8.97e-05 CGGGGACCGT AACAAATT TGTGTGTGTC chr2L:14477998-14478118 104 8.97e-05 AAGTGTGCAT AACAAATT CGATAATGA chr3L:21296381-21296501 18 8.97e-05 GGGCGACCCC AACGAATT CTATCTTGTT chr2R:9197274-9197394 54 8.97e-05 CAAAGAGCGC AACAAATT TGCGACTAAT chr3R:30917403-30917523 40 8.97e-05 GATATATCTA AACAAATT TCAATTTTGT chr3L:22142981-22143101 18 8.97e-05 GGCAATTGTA AACGAATT CGGATTGCCG chr3L:13284432-13284552 54 8.97e-05 GGACAACTTG AACAAATT TGTTTATGAA chr3L:10840950-10841070 19 8.97e-05 ATGGCAAATG AACAAATT TTCGATTCAG chr3L:5884911-5885031 19 8.97e-05 TACAAAGCGC AACGAATT CCTTGGGTGG chr2R:12917076-12917196 46 1.14e-04 TCCTATGGCC AATCAATT AAACCAAGCA chr3R:29583408-29583528 97 1.14e-04 GTGCAAGTCA AATCAATT TCGAGGCAAA chr3L:9052401-9052521 76 1.14e-04 GTGTATAAAA AATCAATT ACTCGGCAAA chr2R:14792979-14793099 62 1.14e-04 TAGCCATGAC AATCAATT TCGAATGCAA chr2L:18934003-18934123 68 1.14e-04 ATTAATTATA AATCAATT ACAGTGTAAA chr2L:8843732-8843852 12 1.14e-04 TCGCATAGGT AATCAATT TTCCCAGCCG chr3R:5095285-5095405 84 1.63e-04 ATCCCAAGTg aaccaaat cgaatcgaat chr2L:1435657-1435777 32 1.63e-04 GCCGTGCCAA AACCAAAT TACACGGATC chr3L:3708076-3708196 44 1.63e-04 CTAATTAATA AATTAATT TCGTTGTTGT chr2L:17768696-17768816 104 1.63e-04 TGGTGCACCt aattaatt gttaattaa chr2R:18341499-18341619 112 1.63e-04 GTACCATGAA AATTAATT G chr2L:12672426-12672546 9 1.63e-04 AGCAGCGT AACCAAAT GGGCTAAGGG chr2L:675913-676033 22 1.63e-04 TAAAATTCGA AATTAATT AAGGCCTGAA chr3R:11692631-11692751 33 1.63e-04 ATCCGTTCCG AATTAATT TGCTGCCCGG chr3L:22129631-22129751 82 1.63e-04 GCACCGCTAT AATTAATT ATGCCGCGCA chr3L:15021068-15021188 73 2.42e-04 TCAAGTATTA AATAAATT AAATGAAATT chr2L:5489357-5489477 78 2.42e-04 TGTTCCGCTA AATAAATT AAAATTTCAC chr2L:1557136-1557256 57 2.88e-04 AATATCAGCA AACGAAAT TATCACAACA chr3R:24090283-24090403 113 2.88e-04 CTGAAACATT AACGAAAT chr3R:10652504-10652624 17 2.88e-04 CATCATGCGT AACGAAAT GGCGCGCACA chr2R:25058169-25058289 57 2.88e-04 GGGAAAAATC AACAAAAT TGAAATTGTA chr2L:3845591-3845711 41 2.88e-04 TTTATAATAC AACAAAAT CAGCTACGCT chr3L:14947744-14947864 10 2.88e-04 AACAGCTGA AACGAAAT GGTAATGGTA chr2R:20050343-20050463 18 3.12e-04 GTATGCACAA AATCAAAT AAGAAATTCG chr2R:21029370-21029490 69 3.12e-04 GGAGTGCATA AATCAAAT AGAAATTCGT chr2L:18371021-18371141 63 3.12e-04 TTCATTTAAA AATCAAAT GCCATGCGCT chr2R:22246736-22246856 70 3.12e-04 TCGCAGCTCC AATCAAAT GCATTCTTCG chr2L:8884240-8884360 61 3.41e-04 GGGCATGGCA AATTAAAT CAAATGAAAA chrX:20757072-20757192 61 3.41e-04 TTATCCTTTC AATTAAAT TGTAGCGTAA chr3L:16306117-16306237 67 3.41e-04 TAATATTTTA AATTAAAT AATAGATCAC chrX:20648403-20648523 40 3.41e-04 GAAATTGCGA AATTAAAT TTGCAGTTAT chr2L:15429854-15429974 103 3.96e-04 TGCTAATTCA AATAAAAT TCGACTGCTC chr3R:5117892-5118012 37 3.96e-04 CGCTCAATCA AATGAAAT TCTATACGCA chr2L:5934089-5934209 22 3.96e-04 AACAAACCGA AATAAAAT AAAAAGATAC chr3R:21544523-21544643 27 3.96e-04 TTTCTCACCA AATAAAAT CGGCGAAAAG chr2L:7591813-7591933 102 3.96e-04 TGCACAATAC AATGAAAT TGATGGACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5102559-5102679 2e-05 10_[+4]_102 chr3L:14089953-14090073 2e-05 71_[+4]_41 chr3L:645423-645543 4.4e-05 9_[+4]_103 chrX:19015438-19015558 4.4e-05 70_[+4]_42 chr2R:22506886-22507006 4.4e-05 76_[+4]_36 chr2R:25168673-25168793 4.4e-05 68_[+4]_44 chr3R:7138206-7138326 4.4e-05 10_[+4]_102 chr3R:21538229-21538349 4.4e-05 13_[+4]_99 chr3L:12290695-12290815 4.4e-05 105_[+4]_7 chr3L:10845908-10846028 9e-05 53_[+4]_59 chr3R:23309826-23309946 9e-05 91_[+4]_21 chr3L:18430536-18430656 9e-05 87_[+4]_25 chr3L:12727452-12727572 9e-05 37_[+4]_75 chr3R:25368007-25368127 9e-05 66_[+4]_46 chr3L:15664543-15664663 9e-05 93_[+4]_19 chr2L:7127257-7127377 9e-05 74_[+4]_38 chr2L:14477998-14478118 9e-05 103_[+4]_9 chr3L:21296381-21296501 9e-05 17_[+4]_95 chr2R:9197274-9197394 9e-05 53_[+4]_59 chr3R:30917403-30917523 9e-05 39_[+4]_73 chr3L:22142981-22143101 9e-05 17_[+4]_95 chr3L:13284432-13284552 9e-05 53_[+4]_59 chr3L:10840950-10841070 9e-05 18_[+4]_94 chr3L:5884911-5885031 9e-05 18_[+4]_94 chr2R:12917076-12917196 0.00011 45_[+4]_67 chr3R:29583408-29583528 0.00011 96_[+4]_16 chr3L:9052401-9052521 0.00011 75_[+4]_37 chr2R:14792979-14793099 0.00011 61_[+4]_51 chr2L:18934003-18934123 0.00011 67_[+4]_45 chr2L:8843732-8843852 0.00011 11_[+4]_101 chr3R:5095285-5095405 0.00016 83_[+4]_29 chr2L:1435657-1435777 0.00016 31_[+4]_81 chr3L:3708076-3708196 0.00016 43_[+4]_69 chr2L:17768696-17768816 0.00016 103_[+4]_9 chr2R:18341499-18341619 0.00016 111_[+4]_1 chr2L:12672426-12672546 0.00016 8_[+4]_104 chr2L:675913-676033 0.00016 21_[+4]_91 chr3R:11692631-11692751 0.00016 32_[+4]_80 chr3L:22129631-22129751 0.00016 81_[+4]_31 chr3L:15021068-15021188 0.00024 72_[+4]_40 chr2L:5489357-5489477 0.00024 77_[+4]_35 chr2L:1557136-1557256 0.00029 56_[+4]_56 chr3R:24090283-24090403 0.00029 112_[+4] chr3R:10652504-10652624 0.00029 16_[+4]_96 chr2R:25058169-25058289 0.00029 56_[+4]_56 chr2L:3845591-3845711 0.00029 40_[+4]_72 chr3L:14947744-14947864 0.00029 9_[+4]_103 chr2R:20050343-20050463 0.00031 17_[+4]_95 chr2R:21029370-21029490 0.00031 68_[+4]_44 chr2L:18371021-18371141 0.00031 62_[+4]_50 chr2R:22246736-22246856 0.00031 69_[+4]_43 chr2L:8884240-8884360 0.00034 60_[+4]_52 chrX:20757072-20757192 0.00034 60_[+4]_52 chr3L:16306117-16306237 0.00034 66_[+4]_46 chrX:20648403-20648523 0.00034 39_[+4]_73 chr2L:15429854-15429974 0.0004 102_[+4]_10 chr3R:5117892-5118012 0.0004 36_[+4]_76 chr2L:5934089-5934209 0.0004 21_[+4]_91 chr3R:21544523-21544643 0.0004 26_[+4]_86 chr2L:7591813-7591933 0.0004 101_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAYNAAWT width=8 seqs=60 chr3R:5102559-5102679 ( 11) AACCAATT 1 chr3L:14089953-14090073 ( 72) AACCAATT 1 chr3L:645423-645543 ( 10) AACTAATT 1 chrX:19015438-19015558 ( 71) AACTAATT 1 chr2R:22506886-22507006 ( 77) AACTAATT 1 chr2R:25168673-25168793 ( 69) AACTAATT 1 chr3R:7138206-7138326 ( 11) AACTAATT 1 chr3R:21538229-21538349 ( 14) AACTAATT 1 chr3L:12290695-12290815 ( 106) AACTAATT 1 chr3L:10845908-10846028 ( 54) AACAAATT 1 chr3R:23309826-23309946 ( 92) AACGAATT 1 chr3L:18430536-18430656 ( 88) AACGAATT 1 chr3L:12727452-12727572 ( 38) AACGAATT 1 chr3R:25368007-25368127 ( 67) AACAAATT 1 chr3L:15664543-15664663 ( 94) AACGAATT 1 chr2L:7127257-7127377 ( 75) AACAAATT 1 chr2L:14477998-14478118 ( 104) AACAAATT 1 chr3L:21296381-21296501 ( 18) AACGAATT 1 chr2R:9197274-9197394 ( 54) AACAAATT 1 chr3R:30917403-30917523 ( 40) AACAAATT 1 chr3L:22142981-22143101 ( 18) AACGAATT 1 chr3L:13284432-13284552 ( 54) AACAAATT 1 chr3L:10840950-10841070 ( 19) AACAAATT 1 chr3L:5884911-5885031 ( 19) AACGAATT 1 chr2R:12917076-12917196 ( 46) AATCAATT 1 chr3R:29583408-29583528 ( 97) AATCAATT 1 chr3L:9052401-9052521 ( 76) AATCAATT 1 chr2R:14792979-14793099 ( 62) AATCAATT 1 chr2L:18934003-18934123 ( 68) AATCAATT 1 chr2L:8843732-8843852 ( 12) AATCAATT 1 chr3R:5095285-5095405 ( 84) AACCAAAT 1 chr2L:1435657-1435777 ( 32) AACCAAAT 1 chr3L:3708076-3708196 ( 44) AATTAATT 1 chr2L:17768696-17768816 ( 104) AATTAATT 1 chr2R:18341499-18341619 ( 112) AATTAATT 1 chr2L:12672426-12672546 ( 9) AACCAAAT 1 chr2L:675913-676033 ( 22) AATTAATT 1 chr3R:11692631-11692751 ( 33) AATTAATT 1 chr3L:22129631-22129751 ( 82) AATTAATT 1 chr3L:15021068-15021188 ( 73) AATAAATT 1 chr2L:5489357-5489477 ( 78) AATAAATT 1 chr2L:1557136-1557256 ( 57) AACGAAAT 1 chr3R:24090283-24090403 ( 113) AACGAAAT 1 chr3R:10652504-10652624 ( 17) AACGAAAT 1 chr2R:25058169-25058289 ( 57) AACAAAAT 1 chr2L:3845591-3845711 ( 41) AACAAAAT 1 chr3L:14947744-14947864 ( 10) AACGAAAT 1 chr2R:20050343-20050463 ( 18) AATCAAAT 1 chr2R:21029370-21029490 ( 69) AATCAAAT 1 chr2L:18371021-18371141 ( 63) AATCAAAT 1 chr2R:22246736-22246856 ( 70) AATCAAAT 1 chr2L:8884240-8884360 ( 61) AATTAAAT 1 chrX:20757072-20757192 ( 61) AATTAAAT 1 chr3L:16306117-16306237 ( 67) AATTAAAT 1 chrX:20648403-20648523 ( 40) AATTAAAT 1 chr2L:15429854-15429974 ( 103) AATAAAAT 1 chr3R:5117892-5118012 ( 37) AATGAAAT 1 chr2L:5934089-5934209 ( 22) AATAAAAT 1 chr3R:21544523-21544643 ( 27) AATAAAAT 1 chr2L:7591813-7591933 ( 102) AATGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 5.4e-006 188 -1255 -1255 -1255 188 -1255 -1255 -1255 -1255 129 -1255 74 -12 15 -10 7 188 -1255 -1255 -1255 188 -1255 -1255 -1255 43 -1255 -1255 123 -1255 -1255 -1255 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 5.4e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.550000 0.000000 0.450000 0.250000 0.250000 0.216667 0.283333 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.366667 0.000000 0.000000 0.633333 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYNAAWT MEME-4 regular expression -------------------------------------------------------------------------------- AA[CT][TACG]AA[TA]T -------------------------------------------------------------------------------- Time 25.95 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCGCCC MEME-5 width = 8 sites = 2 llr = 24 E-value = 4.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaa:aaa probability G ::::a::: matrix T :::::::: bits 2.2 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16152361-16152481 45 6.77e-06 GTCAGAGAAT CCCCGCCC AGTCGGGCGA chr2R:16611212-16611332 93 6.77e-06 TTAATCACCT CCCCGCCC CCTCGTTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16152361-16152481 6.8e-06 44_[+5]_68 chr2R:16611212-16611332 6.8e-06 92_[+5]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCGCCC width=8 seqs=2 chr3R:16152361-16152481 ( 45) CCCCGCCC 1 chr2R:16611212-16611332 ( 93) CCCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.5e+004 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -765 -765 210 -765 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGCCC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCGCCC -------------------------------------------------------------------------------- Time 31.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19198541-19198661 1.71e-01 22_[+2(8.08e-05)]_90 chr3L:12290695-12290815 2.53e-02 105_[+4(4.44e-05)]_7 chr2R:25042070-25042190 6.20e-01 120 chr3L:1915946-1916066 2.64e-01 120 chr3R:29375536-29375656 3.17e-01 120 chr2R:19940988-19941108 1.27e-01 120 chr2R:25053455-25053575 2.32e-01 28_[+1(2.83e-05)]_84 chr3L:22429667-22429787 1.31e-01 120 chr3R:21538229-21538349 6.72e-03 13_[+4(4.44e-05)]_19_[+1(1.30e-05)]_\ 72 chr3L:5884911-5885031 1.40e-02 18_[+4(8.97e-05)]_94 chr2L:11414187-11414307 8.28e-01 120 chr3R:25078804-25078924 9.94e-03 91_[+1(1.30e-05)]_21 chr3L:17357570-17357690 5.99e-01 120 chr2L:18355694-18355814 6.51e-01 120 chrX:779143-779263 3.60e-01 120 chr3R:15611279-15611399 2.05e-01 120 chr3L:14947744-14947864 2.51e-02 87_[+2(8.08e-05)]_25 chrX:5532245-5532365 5.83e-02 66_[+2(8.08e-05)]_46 chr3R:21452835-21452955 6.19e-01 120 chr2L:11414387-11414507 4.13e-01 120 chr4:85024-85144 3.61e-01 120 chrX:20732308-20732428 3.97e-01 120 chr2L:8843732-8843852 4.07e-02 120 chr3R:7138206-7138326 1.12e-01 10_[+4(4.44e-05)]_102 chr2R:22246736-22246856 3.91e-03 120 chr2L:18928032-18928152 7.73e-01 120 chr3L:10840950-10841070 1.08e-01 18_[+4(8.97e-05)]_94 chr3L:22129631-22129751 2.61e-02 120 chr3L:15289502-15289622 7.41e-02 58_[+2(1.71e-05)]_54 chr2L:18934003-18934123 3.58e-01 120 chr2R:9200159-9200279 3.13e-01 120 chr3L:22490254-22490374 3.12e-01 120 chr2R:14792979-14793099 2.49e-01 120 chr2L:7591813-7591933 1.99e-01 120 chr2L:2188445-2188565 1.41e-01 120 chr2L:18367783-18367903 8.38e-01 120 chr3L:6118115-6118235 6.54e-01 120 chr2L:372402-372522 9.61e-01 120 chr3L:2393937-2394057 6.60e-01 120 chr3L:13200269-13200389 3.29e-02 89_[+3(2.91e-05)]_23 chr3R:18260169-18260289 2.94e-01 120 chr3R:11692631-11692751 2.67e-01 120 chr2R:8208814-8208934 5.52e-02 24_[+3(7.35e-05)]_88 chr3R:21544523-21544643 2.42e-01 120 chr2R:25057320-25057440 4.55e-01 120 chr2L:5934089-5934209 1.20e-01 120 chr3R:21426890-21427010 6.61e-01 120 chr2L:5468028-5468148 8.15e-01 120 chr2R:25052767-25052887 1.90e-01 120 chr2L:11294042-11294162 4.64e-01 120 chr2L:10549210-10549330 1.51e-01 120 chr2R:25068639-25068759 1.81e-02 104_[+1(1.30e-05)]_8 chrX:5600144-5600264 2.07e-01 120 chr2L:21014650-21014770 1.32e-01 120 chr3L:19200597-19200717 9.93e-02 53_[+2(8.08e-05)]_59 chr3L:13284432-13284552 2.68e-02 53_[+4(8.97e-05)]_59 chr2L:5489357-5489477 1.12e-04 13_[+3(4.06e-05)]_87_[+1(1.30e-05)]_\ 4 chr2L:675913-676033 8.18e-02 120 chr3L:18989824-18989944 8.03e-01 120 chr2L:1930668-1930788 9.77e-01 120 chr3L:12316249-12316369 6.38e-01 120 chrX:6618717-6618837 1.73e-01 42_[+2(8.08e-05)]_70 chr2R:9981650-9981770 7.45e-02 120 chr2R:9701324-9701444 2.87e-01 120 chrX:9731643-9731763 1.31e-01 120 chr2R:22230582-22230702 6.98e-02 31_[+3(2.91e-05)]_10_[+3(8.49e-05)]_\ 63 chr2L:6829885-6830005 2.91e-01 84_[+2(8.08e-05)]_28 chr3R:30928023-30928143 8.16e-01 120 chr2R:11552112-11552232 3.94e-01 120 chr2L:19897183-19897303 5.43e-01 120 chr2R:6577393-6577513 7.05e-02 120 chr3L:12304319-12304439 8.88e-02 120 chr2R:22864357-22864477 1.47e-03 18_[+3(2.91e-05)]_28_[+1(2.83e-05)]_\ 58 chr2R:25016156-25016276 5.38e-01 120 chr2R:18306939-18307059 9.86e-01 120 chr3R:25088840-25088960 5.01e-01 120 chr3R:8193228-8193348 2.27e-01 120 chr3R:22719089-22719209 7.43e-02 120 chrX:20648403-20648523 2.53e-02 120 chr2R:18316430-18316550 3.19e-02 120 chr3L:14089953-14090073 3.34e-03 71_[+4(2.02e-05)]_41 chr3R:5096312-5096432 6.94e-01 120 chr3R:15576164-15576284 9.93e-01 120 chr2R:6790802-6790922 3.30e-01 120 chr3R:4977642-4977762 9.64e-01 120 chr3R:14369449-14369569 8.14e-01 120 chr3L:12289917-12290037 1.38e-01 120 chr3R:29205343-29205463 9.60e-03 9_[+1(1.30e-05)]_103 chr3L:22142981-22143101 7.56e-02 17_[+4(8.97e-05)]_95 chr3R:30917403-30917523 5.84e-02 39_[+4(8.97e-05)]_73 chr2R:25066511-25066631 7.24e-01 120 chr2R:9197274-9197394 3.58e-02 53_[+4(8.97e-05)]_59 chr3R:30759113-30759233 2.48e-01 84_[+1(5.17e-05)]_28 chr2L:3845591-3845711 2.66e-01 120 chr3L:15021068-15021188 4.27e-01 120 chr2R:25043052-25043172 7.99e-02 120 chr2R:23882920-23883040 4.69e-03 110_[+1(6.28e-05)]_2 chr3L:14949951-14950071 1.10e-02 71_[+2(1.71e-05)]_41 chr3L:8540329-8540449 2.45e-01 120 chr3R:15513405-15513525 8.63e-01 120 chr3L:20794032-20794152 9.91e-02 120 chr3L:21296381-21296501 1.13e-01 17_[+4(8.97e-05)]_95 chr3L:2855772-2855892 1.06e-01 120 chr3L:7714813-7714933 8.04e-03 120 chrX:3084983-3085103 8.06e-01 120 chr2L:6216219-6216339 2.78e-01 120 chrX:9701961-9702081 1.95e-01 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44_[+2(8.08e-05)]_8_[+2(8.08e-05)]_\ 52 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************