******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/gro.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:22595430-22595550 1.0000 120 chr3L:7116081-7116201 1.0000 120 chr2L:15490312-15490432 1.0000 120 chr3L:19015754-19015874 1.0000 120 chr3R:29111944-29112064 1.0000 120 chr3R:19622039-19622159 1.0000 120 chr3R:5278819-5278939 1.0000 120 chrX:16934565-16934685 1.0000 120 chr2R:9106936-9107056 1.0000 120 chr3R:16743185-16743305 1.0000 120 chrX:3157511-3157631 1.0000 120 chr2R:11731936-11732056 1.0000 120 chr2R:6518802-6518922 1.0000 120 chr3L:16014736-16014856 1.0000 120 chrX:9663761-9663881 1.0000 120 chr2L:3057987-3058107 1.0000 120 chr3L:7952015-7952135 1.0000 120 chr3L:6050359-6050479 1.0000 120 chr3R:5063288-5063408 1.0000 120 chr2R:18439171-18439291 1.0000 120 chr3R:15873209-15873329 1.0000 120 chr2L:7572961-7573081 1.0000 120 chr3R:26982277-26982397 1.0000 120 chr2L:6868487-6868607 1.0000 120 chr3L:20209220-20209340 1.0000 120 chr3R:5054935-5055055 1.0000 120 chr3L:11550496-11550616 1.0000 120 chr3L:14309200-14309320 1.0000 120 chr2L:14537985-14538105 1.0000 120 chr3L:10532159-10532279 1.0000 120 chr3R:20273662-20273782 1.0000 120 chr3L:781874-781994 1.0000 120 chr3L:4445942-4446062 1.0000 120 chr3L:958757-958877 1.0000 120 chr2R:9068245-9068365 1.0000 120 chr3R:16230207-16230327 1.0000 120 chr3R:7492264-7492384 1.0000 120 chr3R:15696749-15696869 1.0000 120 chr2L:8451506-8451626 1.0000 120 chr3L:16877058-16877178 1.0000 120 chr3L:7836736-7836856 1.0000 120 chr3R:16348438-16348558 1.0000 120 chr3R:22527334-22527454 1.0000 120 chr2R:12438820-12438940 1.0000 120 chr3L:6615281-6615401 1.0000 120 chr2R:22590695-22590815 1.0000 120 chr2R:22200859-22200979 1.0000 120 chr2L:20879253-20879373 1.0000 120 chr3R:24100806-24100926 1.0000 120 chr2R:7926447-7926567 1.0000 120 chr3L:19777531-19777651 1.0000 120 chr2R:6202434-6202554 1.0000 120 chr2R:16289285-16289405 1.0000 120 chr2R:22738019-22738139 1.0000 120 chr3R:24085131-24085251 1.0000 120 chr2R:15999294-15999414 1.0000 120 chr2L:8719916-8720036 1.0000 120 chr3L:19939182-19939302 1.0000 120 chr2L:7240444-7240564 1.0000 120 chr3R:26056531-26056651 1.0000 120 chr2R:8603293-8603413 1.0000 120 chr3R:17067906-17068026 1.0000 120 chr3L:10748934-10749054 1.0000 120 chr3L:12179213-12179333 1.0000 120 chr2L:14422364-14422484 1.0000 120 chr3L:16572351-16572471 1.0000 120 chr3L:40244-40364 1.0000 120 chr2L:16876753-16876873 1.0000 120 chr3R:26120025-26120145 1.0000 120 chr2R:10173224-10173344 1.0000 120 chr2L:7248218-7248338 1.0000 120 chr3L:19014297-19014417 1.0000 120 chr3R:17818989-17819109 1.0000 120 chr3R:14285197-14285317 1.0000 120 chr3L:8453575-8453695 1.0000 120 chr2L:5945037-5945157 1.0000 120 chr3L:8077366-8077486 1.0000 120 chr2R:8675923-8676043 1.0000 120 chr3R:14064666-14064786 1.0000 120 chr2L:8888883-8889003 1.0000 120 chr2R:11901841-11901961 1.0000 120 chr3L:7132675-7132795 1.0000 120 chr3R:25543832-25543952 1.0000 120 chr3L:7942703-7942823 1.0000 120 chr3L:14657650-14657770 1.0000 120 chr2L:7242547-7242667 1.0000 120 chr3L:7865145-7865265 1.0000 120 chr3L:21101498-21101618 1.0000 120 chr2R:12679482-12679602 1.0000 120 chr2L:6068993-6069113 1.0000 120 chr2R:10272884-10273004 1.0000 120 chr3R:10113847-10113967 1.0000 120 chr3R:14878259-14878379 1.0000 120 chr2L:9620104-9620224 1.0000 120 chr3R:23110834-23110954 1.0000 120 chr2L:10278833-10278953 1.0000 120 chr2L:13000588-13000708 1.0000 120 chr2L:15912505-15912625 1.0000 120 chr2R:23666612-23666732 1.0000 120 chr2R:10192276-10192396 1.0000 120 chr2L:20399271-20399391 1.0000 120 chr2R:9810782-9810902 1.0000 120 chr2R:18498004-18498124 1.0000 120 chr3L:15959020-15959140 1.0000 120 chr2R:16869388-16869508 1.0000 120 chr2L:3092694-3092814 1.0000 120 chr3R:23161617-23161737 1.0000 120 chr3R:16353374-16353494 1.0000 120 chr3L:20441136-20441256 1.0000 120 chr3L:9836809-9836929 1.0000 120 chrX:11359070-11359190 1.0000 120 chr2R:15862799-15862919 1.0000 120 chrX:6600072-6600192 1.0000 120 chr2L:8570565-8570685 1.0000 120 chr3L:14706764-14706884 1.0000 120 chr3L:8698917-8699037 1.0000 120 chr2R:7663769-7663889 1.0000 120 chr2R:18349985-18350105 1.0000 120 chr2L:14490155-14490275 1.0000 120 chr2R:17095229-17095349 1.0000 120 chrX:15626312-15626432 1.0000 120 chr3R:16982399-16982519 1.0000 120 chr3L:17995412-17995532 1.0000 120 chr3R:13382967-13383087 1.0000 120 chrX:16781275-16781395 1.0000 120 chr3L:19289496-19289616 1.0000 120 chrX:11888277-11888397 1.0000 120 chr2R:18180172-18180292 1.0000 120 chr2L:357904-358024 1.0000 120 chr3R:11869345-11869465 1.0000 120 chr3R:26952335-26952455 1.0000 120 chr3R:14481592-14481712 1.0000 120 chrX:18282419-18282539 1.0000 120 chr3L:16958743-16958863 1.0000 120 chr2R:18800604-18800724 1.0000 120 chr2L:14533964-14534084 1.0000 120 chr2R:21610105-21610225 1.0000 120 chr3L:1031325-1031445 1.0000 120 chr3L:8093839-8093959 1.0000 120 chr3R:13801815-13801935 1.0000 120 chr3R:16228897-16229017 1.0000 120 chr3R:19621036-19621156 1.0000 120 chr2R:10604098-10604218 1.0000 120 chrX:16780399-16780519 1.0000 120 chrX:3403520-3403640 1.0000 120 chr3R:20985806-20985926 1.0000 120 chrX:13401377-13401497 1.0000 120 chr3L:17001169-17001289 1.0000 120 chr3L:15835287-15835407 1.0000 120 chr2R:19463277-19463397 1.0000 120 chrX:19498156-19498276 1.0000 120 chr3L:8683135-8683255 1.0000 120 chr2L:20831214-20831334 1.0000 120 chr3L:629817-629937 1.0000 120 chr3R:16158131-16158251 1.0000 120 chr2L:6527058-6527178 1.0000 120 chr2R:6494333-6494453 1.0000 120 chr2R:14140737-14140857 1.0000 120 chr2L:2242242-2242362 1.0000 120 chr3R:24152543-24152663 1.0000 120 chr3R:19223544-19223664 1.0000 120 chr3L:13925182-13925302 1.0000 120 chr3L:21205233-21205353 1.0000 120 chr3R:10677355-10677475 1.0000 120 chr3R:16230409-16230529 1.0000 120 chr2R:6812492-6812612 1.0000 120 chr2R:9189417-9189537 1.0000 120 chr3L:1298618-1298738 1.0000 120 chr3L:17913296-17913416 1.0000 120 chr3L:20088942-20089062 1.0000 120 chrX:12734480-12734600 1.0000 120 chr3L:3334951-3335071 1.0000 120 chr2L:3366222-3366342 1.0000 120 chr3L:8705075-8705195 1.0000 120 chr3L:3942348-3942468 1.0000 120 chr2R:18167187-18167307 1.0000 120 chr3R:5323773-5323893 1.0000 120 chrX:14826135-14826255 1.0000 120 chr2L:12593590-12593710 1.0000 120 chr3R:26859326-26859446 1.0000 120 chr2R:6811121-6811241 1.0000 120 chr3R:9939533-9939653 1.0000 120 chr3R:4381198-4381318 1.0000 120 chr2R:22640263-22640383 1.0000 120 chr3R:10388266-10388386 1.0000 120 chr3L:18901532-18901652 1.0000 120 chr2L:2801161-2801281 1.0000 120 chr3L:4363967-4364087 1.0000 120 chr2R:20330763-20330883 1.0000 120 chrX:19168074-19168194 1.0000 120 chr2L:4187783-4187903 1.0000 120 chr2R:5782678-5782798 1.0000 120 chr2L:10144648-10144768 1.0000 120 chr3R:12719732-12719852 1.0000 120 chrX:13087437-13087557 1.0000 120 chr3R:31636608-31636728 1.0000 120 chr2R:17098566-17098686 1.0000 120 chr3R:29229040-29229160 1.0000 120 chr2L:12004841-12004961 1.0000 120 chr3R:29027162-29027282 1.0000 120 chr2L:18119833-18119953 1.0000 120 chr2R:8149831-8149951 1.0000 120 chr3R:9944533-9944653 1.0000 120 chr3L:14549331-14549451 1.0000 120 chr2R:10429636-10429756 1.0000 120 chr3R:26020846-26020966 1.0000 120 chr3R:22447382-22447502 1.0000 120 chr2R:22062514-22062634 1.0000 120 chr2L:13878949-13879069 1.0000 120 chr2R:17028222-17028342 1.0000 120 chr3R:20548367-20548487 1.0000 120 chr2R:16660231-16660351 1.0000 120 chr3R:30800723-30800843 1.0000 120 chr2R:18351718-18351838 1.0000 120 chr3L:19071548-19071668 1.0000 120 chrX:19605164-19605284 1.0000 120 chr2L:13296093-13296213 1.0000 120 chr3R:7129552-7129672 1.0000 120 chr3R:23223625-23223745 1.0000 120 chr3L:8718794-8718914 1.0000 120 chr3R:29062963-29063083 1.0000 120 chr2R:18289056-18289176 1.0000 120 chr2L:6921880-6922000 1.0000 120 chr3L:18022669-18022789 1.0000 120 chr2L:21166569-21166689 1.0000 120 chr2L:9943640-9943760 1.0000 120 chr3L:7860720-7860840 1.0000 120 chrX:3538855-3538975 1.0000 120 chr3L:3035134-3035254 1.0000 120 chr3R:4654674-4654794 1.0000 120 chr2R:8152062-8152182 1.0000 120 chr3L:7856485-7856605 1.0000 120 chr2L:9698558-9698678 1.0000 120 chr2R:21091812-21091932 1.0000 120 chrX:15306408-15306528 1.0000 120 chr2R:17535802-17535922 1.0000 120 chr2R:21386519-21386639 1.0000 120 chr3L:21058761-21058881 1.0000 120 chr3L:17539091-17539211 1.0000 120 chr2R:22136922-22137042 1.0000 120 chr3R:18301697-18301817 1.0000 120 chr3L:544330-544450 1.0000 120 chr2R:7539654-7539774 1.0000 120 chr2R:21078455-21078575 1.0000 120 chr2R:10734420-10734540 1.0000 120 chr2L:8704792-8704912 1.0000 120 chr2R:16849580-16849700 1.0000 120 chr2R:9413269-9413389 1.0000 120 chrX:10474660-10474780 1.0000 120 chr2L:252342-252462 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_gro/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/gro.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.213 G 0.217 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.213 G 0.217 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WTTTGTTT MEME-1 width = 8 sites = 56 llr = 435 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:::3::: pos.-specific C :1:::::: probability G 1:::6::1 matrix T 59aa2aa9 bits 2.2 2.0 1.8 ** ** 1.6 ** ** Relative 1.3 *** *** Entropy 1.1 *** *** (11.2 bits) 0.9 *** *** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8704792-8704912 15 2.93e-05 GGAGGTGTCA TTTTGTTT TACGATCCCA chr3L:21058761-21058881 56 2.93e-05 CTCGCAGCAG TTTTGTTT GTGGCTCAGT chr3L:3035134-3035254 72 2.93e-05 AAAGTTCTAA TTTTGTTT GTGTGCGTGC chr3R:22447382-22447502 11 2.93e-05 TTTATTCTCT TTTTGTTT AAAATGTAAA chrX:13087437-13087557 15 2.93e-05 GCGATTTTGT TTTTGTTT GCGAAGTTTT chr2R:6811121-6811241 102 2.93e-05 TGTGCGGAGT TTTTGTTT GTGTGCGTGC chrX:19498156-19498276 16 2.93e-05 GGCTATGCTG TTTTGTTT GATTTTTTGG chr3L:15835287-15835407 56 2.93e-05 ATTTGTCGGG TTTTGTTT CGCTGCCAGG chr2R:10604098-10604218 18 2.93e-05 TTATGTTATT TTTTGTTT ATTTTGTTTA chr2R:17095229-17095349 64 2.93e-05 CTTTCGTAGT TTTTGTTT ACGTTTGCTG chr2L:8451506-8451626 82 2.93e-05 GTCCAATTGC TTTTGTTT GGATTAAGGC chr3L:781874-781994 94 2.93e-05 GATGTTTGTA TTTTGTTT CTTGTTTAAG chr2R:18439171-18439291 101 2.93e-05 TTCGtttttt ttttgttt tttttttttt chr2R:10734420-10734540 26 5.96e-05 TCGCTGGTTT ATTTGTTT ACACTCTGCT chr3L:4363967-4364087 32 5.96e-05 caACGCAAGC ATTTGTTT CTCCTTTTTG chr3L:629817-629937 53 5.96e-05 ATTGAATGCA ATTTGTTT AAAAATGTTT chr3L:19289496-19289616 27 5.96e-05 TAGGCAACTT ATTTGTTT TCCTGCGGAT chr3L:14657650-14657770 2 5.96e-05 G ATTTGTTT GTTTTGGCCG chr3R:26056531-26056651 65 5.96e-05 TCACTGTTTC ATTTGTTT TTACTCCGTG chr2L:10278833-10278953 103 9.87e-05 ACCAAATAAT TTTTATTT TCGCGTTAGC chr2L:8888883-8889003 72 9.87e-05 ATAGAAGTAT TTTTATTT GAAATGCTAC chr3L:4445942-4446062 7 9.87e-05 TGAAAA TTTTATTT CCTGTTCTTG chr3L:19015754-19015874 15 9.87e-05 tgttgttgtt ttttattt CTACCGGCAC chr2R:8152062-8152182 46 1.21e-04 TATTTTCAAT GTTTGTTT GTAGTATCCA chr3L:8705075-8705195 34 1.21e-04 TGTTGTGCCA GTTTGTTT TCGCCCGACG chr2L:5945037-5945157 73 1.21e-04 ATGCCGCACC GTTTGTTT GCCTATATAA chr3L:20209220-20209340 45 1.21e-04 TAATTAGACA GTTTGTTT TTTCGACGCC chr2L:21166569-21166689 15 1.62e-04 AGGAACTTAA ATTTATTT TAGAATTTGA chr2R:22062514-22062634 60 1.62e-04 TCCGATATTT ATTTATTT GCTGTTTACG chr2R:18800604-18800724 61 1.62e-04 ACGTTTTTAA ATTTATTT GCGCAATGTC chrX:11888277-11888397 17 1.62e-04 TCAAAAATGT ATTTATTT CAACATATGA chr3L:21101498-21101618 58 1.62e-04 TCTTTTTATT ATTTATTT ATTGCGGCTT chr2R:22738019-22738139 61 1.62e-04 TTGTACCTTA ATTTATTT TAAGCAGAGA chr3L:7116081-7116201 74 1.62e-04 GCGCTATTTA ATTTATTT GGAATTTCGA chr2L:252342-252462 97 2.00e-04 CTAACAGTTT TTTTTTTT TACATAGGAA chr3L:13925182-13925302 82 2.00e-04 TGCCGCGGTT TTTTTTTT TTGGACTACT chr3R:16353374-16353494 26 2.00e-04 GTTCAAAAAC TTTTTTTT ATAGTTTCGT chr2L:3092694-3092814 30 2.00e-04 TCATTACTAT TTTTTTTT CCAACAAGCC chr2L:15490312-15490432 8 2.00e-04 TCAAAGT TTTTTTTT CGTTCTTATC chr2R:14140737-14140857 100 2.39e-04 TTTAAGCATT ATTTTTTT AACAGATCAC chr3L:15959020-15959140 11 2.39e-04 TTGGTTTTCA ATTTTTTT CTTCGTATTT chr3L:40244-40364 14 2.39e-04 ATTGTTTGTT ATTTTTTT GTCTCGCTTG chr2L:20399271-20399391 75 2.61e-04 TCAATGAAAC TCTTGTTT TCCGCCCGGC chr3R:20273662-20273782 76 2.61e-04 CAGTCAAAGT TCTTGTTT GATTTACATG chr2L:7242547-7242667 75 2.84e-04 TTAGACGAAT TTTTGTTG ACACCTTTCC chr2R:11731936-11732056 104 2.84e-04 TCGATCGAGG TTTTGTTG TTCGCCGCC chr2R:17028222-17028342 40 3.07e-04 TCGGCCAAAA ACTTGTTT TCCCCCAACC chr2R:9189417-9189537 95 3.07e-04 CAGCCACTCT ACTTGTTT TCGCGCCCAT chr3R:10677355-10677475 35 3.07e-04 GGAGGGGATC ACTTGTTT TAATCAACAA chr3L:16958743-16958863 56 3.07e-04 TCAATTGTGA ACTTGTTT CGTGAGCGTG chr3L:8698917-8699037 58 3.61e-04 ATGATTGATG GTTTATTT TTAGTAGCTC chr3R:19622039-19622159 24 3.61e-04 ATAAATATCA ATTTGTTG GCAACACTAA chr3L:7860720-7860840 88 3.90e-04 AATTGAATTA GTTTTTTT CCTGCCCCTC chr3R:14285197-14285317 17 4.67e-04 TCGTTTTTCA TTTTATTG TATAATTTAT chr3R:16743185-16743305 37 4.67e-04 GTAAAATAAA TTTTATTG GCTCGTAAAA chr3L:19014297-19014417 72 6.58e-04 AACATGTTCT TTTGGTTT ATCTTGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8704792-8704912 2.9e-05 14_[+1]_98 chr3L:21058761-21058881 2.9e-05 55_[+1]_57 chr3L:3035134-3035254 2.9e-05 71_[+1]_41 chr3R:22447382-22447502 2.9e-05 10_[+1]_102 chrX:13087437-13087557 2.9e-05 14_[+1]_98 chr2R:6811121-6811241 2.9e-05 101_[+1]_11 chrX:19498156-19498276 2.9e-05 15_[+1]_97 chr3L:15835287-15835407 2.9e-05 55_[+1]_57 chr2R:10604098-10604218 2.9e-05 17_[+1]_95 chr2R:17095229-17095349 2.9e-05 63_[+1]_49 chr2L:8451506-8451626 2.9e-05 81_[+1]_31 chr3L:781874-781994 2.9e-05 93_[+1]_19 chr2R:18439171-18439291 2.9e-05 100_[+1]_12 chr2R:10734420-10734540 6e-05 25_[+1]_87 chr3L:4363967-4364087 6e-05 31_[+1]_81 chr3L:629817-629937 6e-05 52_[+1]_60 chr3L:19289496-19289616 6e-05 26_[+1]_86 chr3L:14657650-14657770 6e-05 1_[+1]_111 chr3R:26056531-26056651 6e-05 64_[+1]_48 chr2L:10278833-10278953 9.9e-05 102_[+1]_10 chr2L:8888883-8889003 9.9e-05 71_[+1]_41 chr3L:4445942-4446062 9.9e-05 6_[+1]_106 chr3L:19015754-19015874 9.9e-05 14_[+1]_98 chr2R:8152062-8152182 0.00012 45_[+1]_67 chr3L:8705075-8705195 0.00012 33_[+1]_79 chr2L:5945037-5945157 0.00012 72_[+1]_40 chr3L:20209220-20209340 0.00012 44_[+1]_68 chr2L:21166569-21166689 0.00016 14_[+1]_98 chr2R:22062514-22062634 0.00016 59_[+1]_53 chr2R:18800604-18800724 0.00016 60_[+1]_52 chrX:11888277-11888397 0.00016 16_[+1]_96 chr3L:21101498-21101618 0.00016 57_[+1]_55 chr2R:22738019-22738139 0.00016 60_[+1]_52 chr3L:7116081-7116201 0.00016 73_[+1]_39 chr2L:252342-252462 0.0002 96_[+1]_16 chr3L:13925182-13925302 0.0002 81_[+1]_31 chr3R:16353374-16353494 0.0002 25_[+1]_87 chr2L:3092694-3092814 0.0002 29_[+1]_83 chr2L:15490312-15490432 0.0002 7_[+1]_105 chr2R:14140737-14140857 0.00024 99_[+1]_13 chr3L:15959020-15959140 0.00024 10_[+1]_102 chr3L:40244-40364 0.00024 13_[+1]_99 chr2L:20399271-20399391 0.00026 74_[+1]_38 chr3R:20273662-20273782 0.00026 75_[+1]_37 chr2L:7242547-7242667 0.00028 74_[+1]_38 chr2R:11731936-11732056 0.00028 103_[+1]_9 chr2R:17028222-17028342 0.00031 39_[+1]_73 chr2R:9189417-9189537 0.00031 94_[+1]_18 chr3R:10677355-10677475 0.00031 34_[+1]_78 chr3L:16958743-16958863 0.00031 55_[+1]_57 chr3L:8698917-8699037 0.00036 57_[+1]_55 chr3R:19622039-19622159 0.00036 23_[+1]_89 chr3L:7860720-7860840 0.00039 87_[+1]_25 chr3R:14285197-14285317 0.00047 16_[+1]_96 chr3R:16743185-16743305 0.00047 36_[+1]_76 chr3L:19014297-19014417 0.00066 71_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTGTTT width=8 seqs=56 chr2L:8704792-8704912 ( 15) TTTTGTTT 1 chr3L:21058761-21058881 ( 56) TTTTGTTT 1 chr3L:3035134-3035254 ( 72) TTTTGTTT 1 chr3R:22447382-22447502 ( 11) TTTTGTTT 1 chrX:13087437-13087557 ( 15) TTTTGTTT 1 chr2R:6811121-6811241 ( 102) TTTTGTTT 1 chrX:19498156-19498276 ( 16) TTTTGTTT 1 chr3L:15835287-15835407 ( 56) TTTTGTTT 1 chr2R:10604098-10604218 ( 18) TTTTGTTT 1 chr2R:17095229-17095349 ( 64) TTTTGTTT 1 chr2L:8451506-8451626 ( 82) TTTTGTTT 1 chr3L:781874-781994 ( 94) TTTTGTTT 1 chr2R:18439171-18439291 ( 101) TTTTGTTT 1 chr2R:10734420-10734540 ( 26) ATTTGTTT 1 chr3L:4363967-4364087 ( 32) ATTTGTTT 1 chr3L:629817-629937 ( 53) ATTTGTTT 1 chr3L:19289496-19289616 ( 27) ATTTGTTT 1 chr3L:14657650-14657770 ( 2) ATTTGTTT 1 chr3R:26056531-26056651 ( 65) ATTTGTTT 1 chr2L:10278833-10278953 ( 103) TTTTATTT 1 chr2L:8888883-8889003 ( 72) TTTTATTT 1 chr3L:4445942-4446062 ( 7) TTTTATTT 1 chr3L:19015754-19015874 ( 15) TTTTATTT 1 chr2R:8152062-8152182 ( 46) GTTTGTTT 1 chr3L:8705075-8705195 ( 34) GTTTGTTT 1 chr2L:5945037-5945157 ( 73) GTTTGTTT 1 chr3L:20209220-20209340 ( 45) GTTTGTTT 1 chr2L:21166569-21166689 ( 15) ATTTATTT 1 chr2R:22062514-22062634 ( 60) ATTTATTT 1 chr2R:18800604-18800724 ( 61) ATTTATTT 1 chrX:11888277-11888397 ( 17) ATTTATTT 1 chr3L:21101498-21101618 ( 58) ATTTATTT 1 chr2R:22738019-22738139 ( 61) ATTTATTT 1 chr3L:7116081-7116201 ( 74) ATTTATTT 1 chr2L:252342-252462 ( 97) TTTTTTTT 1 chr3L:13925182-13925302 ( 82) TTTTTTTT 1 chr3R:16353374-16353494 ( 26) TTTTTTTT 1 chr2L:3092694-3092814 ( 30) TTTTTTTT 1 chr2L:15490312-15490432 ( 8) TTTTTTTT 1 chr2R:14140737-14140857 ( 100) ATTTTTTT 1 chr3L:15959020-15959140 ( 11) ATTTTTTT 1 chr3L:40244-40364 ( 14) ATTTTTTT 1 chr2L:20399271-20399391 ( 75) TCTTGTTT 1 chr3R:20273662-20273782 ( 76) TCTTGTTT 1 chr2L:7242547-7242667 ( 75) TTTTGTTG 1 chr2R:11731936-11732056 ( 104) TTTTGTTG 1 chr2R:17028222-17028342 ( 40) ACTTGTTT 1 chr2R:9189417-9189537 ( 95) ACTTGTTT 1 chr3R:10677355-10677475 ( 35) ACTTGTTT 1 chr3L:16958743-16958863 ( 56) ACTTGTTT 1 chr3L:8698917-8699037 ( 58) GTTTATTT 1 chr3R:19622039-19622159 ( 24) ATTTGTTG 1 chr3L:7860720-7860840 ( 88) GTTTTTTT 1 chr3R:14285197-14285317 ( 17) TTTTATTG 1 chr3R:16743185-16743305 ( 37) TTTTATTG 1 chr3L:19014297-19014417 ( 72) TTTGGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1998 E= 4.0e+001 37 -1245 -102 89 -1245 -99 -1245 167 -1245 -1245 -1245 184 -1245 -1245 -360 181 -22 -1245 144 -80 -1245 -1245 -1245 184 -1245 -1245 -1245 184 -1245 -1245 -128 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 4.0e+001 0.375000 0.000000 0.107143 0.517857 0.000000 0.107143 0.000000 0.892857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.017857 0.982143 0.250000 0.000000 0.589286 0.160714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.089286 0.910714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TTT[GA]TTT -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF BCTTATCG MEME-2 width = 8 sites = 35 llr = 298 E-value = 5.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a::3 pos.-specific C 481:::a: probability G 42:::::7 matrix T 3:9a:a:: bits 2.2 * 2.0 * 1.8 **** 1.6 * **** Relative 1.3 ****** Entropy 1.1 ******* (12.3 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTATCG consensus GG A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21078455-21078575 9 2.70e-05 TCGATTGC CCTTATCG CGTATTGAAT chr2R:17535802-17535922 109 2.70e-05 ATCGGTTTTG GCTTATCG GCAA chr2R:18289056-18289176 28 2.70e-05 CGCCCCTTTC GCTTATCG CACACTGCAA chr3R:29062963-29063083 58 2.70e-05 CGCCCGTAGG GCTTATCG CCCATCGACC chr3L:8705075-8705195 53 2.70e-05 CGCCCGACGG CCTTATCG CCAGTCCGTC chr2L:3366222-3366342 73 2.70e-05 GACACATGCT CCTTATCG GACAGCAAGT chr2L:357904-358024 4 2.70e-05 ATG GCTTATCG AGAGGAATCG chr2L:7242547-7242667 6 2.70e-05 ACACA CCTTATCG CCAGTCAATA chr2R:15999294-15999414 106 2.70e-05 CTCCACGCAC GCTTATCG TGTTCGC chr2R:6202434-6202554 2 2.70e-05 G CCTTATCG CGGTTCAGGG chr3R:16348438-16348558 28 2.70e-05 ATCACCACCG CCTTATCG CCCTAATAGA chr2L:6868487-6868607 78 2.70e-05 AGCGGTAAAC CCTTATCG GTGCGCCGGA chr3R:24085131-24085251 43 4.45e-05 AAGCTGCAAA TCTTATCG GTTTGCCATT chrX:16934565-16934685 8 4.45e-05 GCGGCAA TCTTATCG GATCGTAAAG chr2R:21610105-21610225 25 8.05e-05 CTCACTGATA GCTTATCA TCGCCACTCT chr3R:16982399-16982519 9 8.05e-05 TCTTGTCC GCTTATCA TAATCACAAC chr2L:8570565-8570685 8 8.05e-05 TCACACG CCTTATCA CTTTTATGAT chr3L:7836736-7836856 75 8.05e-05 CTTCTTTTGG CCTTATCA CCCAGCACTT chr3L:6050359-6050479 44 8.05e-05 AGAAATCTAT GCTTATCA CTTACCACTT chr3R:29111944-29112064 96 8.05e-05 GGCCTACTTA CCTTATCA CTAACCGCCT chr2L:6068993-6069113 38 1.08e-04 CCGGCAAATT GGTTATCG ATAGTGCAGG chr3L:40244-40364 38 1.08e-04 CTTGCACACT GGTTATCG GATTTCAGCA chr3R:26056531-26056651 100 1.08e-04 CACGTCTAAC CGTTATCG ATATCACAAA chr2L:9943640-9943760 62 1.52e-04 GCAAGTTATT TCTTATCA TTTTATGGAC chr3L:18901532-18901652 86 1.52e-04 ACTTTTCTTA GCCTATCG ATAAGCGCAG chr3R:20985806-20985926 33 1.52e-04 TTGTATATCT CCCTATCG AGTCTCCGTA chr2L:8719916-8720036 97 1.52e-04 ATGTGATTTG CCCTATCG CACTGGCATC chr2L:8451506-8451626 57 1.52e-04 ATTGCTCAAG TCTTATCA GCGAAGTGTC chr3L:7952015-7952135 4 1.52e-04 AAT GCCTATCG CAGCAAATAA chr3L:19015754-19015874 49 1.52e-04 CGGGGCTAAA TCTTATCA AAGGGAATGC chr2L:15490312-15490432 19 1.52e-04 TTTTTTTCGT TCTTATCA ACTCTCCCCT chr3R:29229040-29229160 17 1.70e-04 TTTGCGCTTT TGTTATCG CTATAAAATA chr2R:18180172-18180292 104 1.70e-04 GTGCTCCCGC TGTTATCG ATAAGACCA chr3R:7492264-7492384 87 1.70e-04 GCATTATCGT TGTTATCG AAAAAAAAGT chr3R:14878259-14878379 15 2.20e-04 TCGGCAAGAG GGTTATCA ATATAGATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21078455-21078575 2.7e-05 8_[+2]_104 chr2R:17535802-17535922 2.7e-05 108_[+2]_4 chr2R:18289056-18289176 2.7e-05 27_[+2]_85 chr3R:29062963-29063083 2.7e-05 57_[+2]_55 chr3L:8705075-8705195 2.7e-05 52_[+2]_60 chr2L:3366222-3366342 2.7e-05 72_[+2]_40 chr2L:357904-358024 2.7e-05 3_[+2]_109 chr2L:7242547-7242667 2.7e-05 5_[+2]_107 chr2R:15999294-15999414 2.7e-05 105_[+2]_7 chr2R:6202434-6202554 2.7e-05 1_[+2]_111 chr3R:16348438-16348558 2.7e-05 27_[+2]_85 chr2L:6868487-6868607 2.7e-05 77_[+2]_35 chr3R:24085131-24085251 4.4e-05 42_[+2]_70 chrX:16934565-16934685 4.4e-05 7_[+2]_105 chr2R:21610105-21610225 8.1e-05 24_[+2]_88 chr3R:16982399-16982519 8.1e-05 8_[+2]_104 chr2L:8570565-8570685 8.1e-05 7_[+2]_105 chr3L:7836736-7836856 8.1e-05 74_[+2]_38 chr3L:6050359-6050479 8.1e-05 43_[+2]_69 chr3R:29111944-29112064 8.1e-05 95_[+2]_17 chr2L:6068993-6069113 0.00011 37_[+2]_75 chr3L:40244-40364 0.00011 37_[+2]_75 chr3R:26056531-26056651 0.00011 99_[+2]_13 chr2L:9943640-9943760 0.00015 61_[+2]_51 chr3L:18901532-18901652 0.00015 85_[+2]_27 chr3R:20985806-20985926 0.00015 32_[+2]_80 chr2L:8719916-8720036 0.00015 96_[+2]_16 chr2L:8451506-8451626 0.00015 56_[+2]_56 chr3L:7952015-7952135 0.00015 3_[+2]_109 chr3L:19015754-19015874 0.00015 48_[+2]_64 chr2L:15490312-15490432 0.00015 18_[+2]_94 chr3R:29229040-29229160 0.00017 16_[+2]_96 chr2R:18180172-18180292 0.00017 103_[+2]_9 chr3R:7492264-7492384 0.00017 86_[+2]_26 chr3R:14878259-14878379 0.00022 14_[+2]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCTTATCG width=8 seqs=35 chr2R:21078455-21078575 ( 9) CCTTATCG 1 chr2R:17535802-17535922 ( 109) GCTTATCG 1 chr2R:18289056-18289176 ( 28) GCTTATCG 1 chr3R:29062963-29063083 ( 58) GCTTATCG 1 chr3L:8705075-8705195 ( 53) CCTTATCG 1 chr2L:3366222-3366342 ( 73) CCTTATCG 1 chr2L:357904-358024 ( 4) GCTTATCG 1 chr2L:7242547-7242667 ( 6) CCTTATCG 1 chr2R:15999294-15999414 ( 106) GCTTATCG 1 chr2R:6202434-6202554 ( 2) CCTTATCG 1 chr3R:16348438-16348558 ( 28) CCTTATCG 1 chr2L:6868487-6868607 ( 78) CCTTATCG 1 chr3R:24085131-24085251 ( 43) TCTTATCG 1 chrX:16934565-16934685 ( 8) TCTTATCG 1 chr2R:21610105-21610225 ( 25) GCTTATCA 1 chr3R:16982399-16982519 ( 9) GCTTATCA 1 chr2L:8570565-8570685 ( 8) CCTTATCA 1 chr3L:7836736-7836856 ( 75) CCTTATCA 1 chr3L:6050359-6050479 ( 44) GCTTATCA 1 chr3R:29111944-29112064 ( 96) CCTTATCA 1 chr2L:6068993-6069113 ( 38) GGTTATCG 1 chr3L:40244-40364 ( 38) GGTTATCG 1 chr3R:26056531-26056651 ( 100) CGTTATCG 1 chr2L:9943640-9943760 ( 62) TCTTATCA 1 chr3L:18901532-18901652 ( 86) GCCTATCG 1 chr3R:20985806-20985926 ( 33) CCCTATCG 1 chr2L:8719916-8720036 ( 97) CCCTATCG 1 chr2L:8451506-8451626 ( 57) TCTTATCA 1 chr3L:7952015-7952135 ( 4) GCCTATCG 1 chr3L:19015754-19015874 ( 49) TCTTATCA 1 chr2L:15490312-15490432 ( 19) TCTTATCA 1 chr3R:29229040-29229160 ( 17) TGTTATCG 1 chr2R:18180172-18180292 ( 104) TGTTATCG 1 chr3R:7492264-7492384 ( 87) TGTTATCG 1 chr3R:14878259-14878379 ( 15) GGTTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 5.0e+001 -1177 80 77 -12 -1177 191 -12 -1177 -1177 -90 -1177 166 -1177 -1177 -1177 184 178 -1177 -1177 -1177 -1177 -1177 -1177 184 -1177 223 -1177 -1177 11 -1177 166 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 5.0e+001 0.000000 0.371429 0.371429 0.257143 0.000000 0.800000 0.200000 0.000000 0.000000 0.114286 0.000000 0.885714 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.314286 0.000000 0.685714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCG MEME-2 regular expression -------------------------------------------------------------------------------- [CGT][CG]TTATC[GA] -------------------------------------------------------------------------------- Time 13.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCCCC MEME-3 width = 8 sites = 2 llr = 25 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaaaa probability G :a:::::: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13801815-13801935 41 4.32e-06 GGACTCATTT CGCCCCCC AGTACGATTT chr3L:11550496-11550616 55 4.32e-06 GTCTTTTGTG CGCCCCCC TTCTAGTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13801815-13801935 4.3e-06 40_[+3]_72 chr3L:11550496-11550616 4.3e-06 54_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCCCC width=8 seqs=2 chr3R:13801815-13801935 ( 41) CGCCCCCC 1 chr3L:11550496-11550616 ( 55) CGCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.8e+004 -765 223 -765 -765 -765 -765 220 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCCC MEME-3 regular expression -------------------------------------------------------------------------------- CGCCCCCC -------------------------------------------------------------------------------- Time 19.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCGCC MEME-4 width = 8 sites = 2 llr = 25 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaa:aa probability G :::::a:: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7572961-7573081 29 4.32e-06 GCAGACACTC CCCCCGCC GACCGTCCGA chr2R:6518802-6518922 111 4.32e-06 ATTCTCGTTT CCCCCGCC AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7572961-7573081 4.3e-06 28_[+4]_84 chr2R:6518802-6518922 4.3e-06 110_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCGCC width=8 seqs=2 chr2L:7572961-7573081 ( 29) CCCCCGCC 1 chr2R:6518802-6518922 ( 111) CCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.8e+004 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 -765 220 -765 -765 223 -765 -765 -765 223 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCGCC MEME-4 regular expression -------------------------------------------------------------------------------- CCCCCGCC -------------------------------------------------------------------------------- Time 25.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCTCC MEME-5 width = 8 sites = 2 llr = 24 E-value = 2.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaa:aa probability G :::::::: matrix T :::::a:: bits 2.2 ***** ** 2.0 ***** ** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10604098-10604218 36 5.57e-06 ATTTTGTTTA CCCCCTCC TTTTCTGCCT chr3L:21101498-21101618 27 5.57e-06 AAGTGTGTAA CCCCCTCC CTTTTGGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10604098-10604218 5.6e-06 35_[+5]_77 chr3L:21101498-21101618 5.6e-06 26_[+5]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCTCC width=8 seqs=2 chr2R:10604098-10604218 ( 36) CCCCCTCC 1 chr3L:21101498-21101618 ( 27) CCCCCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.8e+004 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 -765 -765 183 -765 223 -765 -765 -765 223 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCCTCC -------------------------------------------------------------------------------- Time 32.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22595430-22595550 4.37e-01 120 chr3L:7116081-7116201 3.89e-01 120 chr2L:15490312-15490432 4.23e-03 120 chr3L:19015754-19015874 3.51e-02 14_[+1(9.87e-05)]_98 chr3R:29111944-29112064 5.87e-03 95_[+2(8.05e-05)]_17 chr3R:19622039-19622159 5.57e-01 120 chr3R:5278819-5278939 4.60e-01 120 chrX:16934565-16934685 9.56e-02 7_[+2(4.45e-05)]_105 chr2R:9106936-9107056 9.21e-01 120 chr3R:16743185-16743305 7.84e-01 120 chrX:3157511-3157631 1.00e+00 120 chr2R:11731936-11732056 3.94e-02 120 chr2R:6518802-6518922 2.08e-05 110_[+4(4.32e-06)]_2 chr3L:16014736-16014856 2.90e-01 120 chrX:9663761-9663881 6.69e-01 120 chr2L:3057987-3058107 1.28e-02 120 chr3L:7952015-7952135 4.10e-01 120 chr3L:6050359-6050479 3.09e-01 43_[+2(8.05e-05)]_69 chr3R:5063288-5063408 8.27e-01 120 chr2R:18439171-18439291 1.25e-02 100_[+1(2.93e-05)]_12 chr3R:15873209-15873329 8.74e-01 120 chr2L:7572961-7573081 7.06e-05 28_[+4(4.32e-06)]_84 chr3R:26982277-26982397 9.00e-01 120 chr2L:6868487-6868607 1.80e-01 77_[+2(2.70e-05)]_35 chr3L:20209220-20209340 3.36e-01 120 chr3R:5054935-5055055 8.57e-01 120 chr3L:11550496-11550616 4.19e-04 54_[+3(4.32e-06)]_58 chr3L:14309200-14309320 8.76e-01 120 chr2L:14537985-14538105 1.00e+00 120 chr3L:10532159-10532279 7.44e-01 120 chr3R:20273662-20273782 1.59e-01 120 chr3L:781874-781994 1.99e-01 93_[+1(2.93e-05)]_19 chr3L:4445942-4446062 5.24e-01 6_[+1(9.87e-05)]_106 chr3L:958757-958877 2.79e-01 120 chr2R:9068245-9068365 9.59e-01 120 chr3R:16230207-16230327 7.82e-01 120 chr3R:7492264-7492384 4.66e-01 120 chr3R:15696749-15696869 9.21e-01 120 chr2L:8451506-8451626 1.58e-04 81_[+1(2.93e-05)]_31 chr3L:16877058-16877178 7.92e-01 120 chr3L:7836736-7836856 1.41e-05 54_[+5(1.99e-05)]_12_[+2(8.05e-05)]_\ 38 chr3R:16348438-16348558 1.13e-03 27_[+2(2.70e-05)]_85 chr3R:22527334-22527454 6.99e-01 120 chr2R:12438820-12438940 4.79e-01 120 chr3L:6615281-6615401 7.20e-01 120 chr2R:22590695-22590815 9.97e-01 120 chr2R:22200859-22200979 1.28e-01 120 chr2L:20879253-20879373 9.07e-01 120 chr3R:24100806-24100926 9.31e-01 120 chr2R:7926447-7926567 9.99e-01 120 chr3L:19777531-19777651 9.96e-01 120 chr2R:6202434-6202554 7.81e-02 1_[+2(2.70e-05)]_111 chr2R:16289285-16289405 9.71e-01 120 chr2R:22738019-22738139 5.72e-01 120 chr3R:24085131-24085251 3.37e-01 42_[+2(4.45e-05)]_70 chr2R:15999294-15999414 2.12e-01 105_[+2(2.70e-05)]_7 chr2L:8719916-8720036 2.29e-01 120 chr3L:19939182-19939302 9.71e-01 120 chr2L:7240444-7240564 8.78e-01 120 chr3R:26056531-26056651 3.80e-02 64_[+1(5.96e-05)]_48 chr2R:8603293-8603413 7.10e-01 120 chr3R:17067906-17068026 9.73e-01 120 chr3L:10748934-10749054 1.00e+00 120 chr3L:12179213-12179333 9.76e-01 120 chr2L:14422364-14422484 9.79e-01 120 chr3L:16572351-16572471 3.96e-01 120 chr3L:40244-40364 6.69e-02 120 chr2L:16876753-16876873 1.28e-01 120 chr3R:26120025-26120145 9.08e-01 120 chr2R:10173224-10173344 6.54e-01 120 chr2L:7248218-7248338 9.39e-01 120 chr3L:19014297-19014417 4.14e-01 120 chr3R:17818989-17819109 6.42e-01 120 chr3R:14285197-14285317 6.97e-01 120 chr3L:8453575-8453695 6.88e-01 120 chr2L:5945037-5945157 3.55e-01 120 chr3L:8077366-8077486 9.93e-01 120 chr2R:8675923-8676043 8.67e-01 120 chr3R:14064666-14064786 2.07e-01 120 chr2L:8888883-8889003 2.68e-01 71_[+1(9.87e-05)]_41 chr2R:11901841-11901961 9.78e-01 120 chr3L:7132675-7132795 9.54e-01 120 chr3R:25543832-25543952 5.68e-01 120 chr3L:7942703-7942823 9.89e-01 120 chr3L:14657650-14657770 2.42e-02 1_[+1(5.96e-05)]_111 chr2L:7242547-7242667 3.14e-02 5_[+2(2.70e-05)]_107 chr3L:7865145-7865265 9.87e-01 120 chr3L:21101498-21101618 1.06e-04 26_[+5(5.57e-06)]_86 chr2R:12679482-12679602 8.17e-01 120 chr2L:6068993-6069113 4.40e-01 120 chr2R:10272884-10273004 8.72e-01 120 chr3R:10113847-10113967 1.00e+00 120 chr3R:14878259-14878379 4.22e-01 120 chr2L:9620104-9620224 9.91e-01 120 chr3R:23110834-23110954 9.57e-01 120 chr2L:10278833-10278953 3.16e-01 102_[+1(9.87e-05)]_10 chr2L:13000588-13000708 5.01e-01 120 chr2L:15912505-15912625 4.79e-01 120 chr2R:23666612-23666732 9.69e-01 120 chr2R:10192276-10192396 1.00e+00 120 chr2L:20399271-20399391 1.11e-01 120 chr2R:9810782-9810902 9.96e-01 120 chr2R:18498004-18498124 9.99e-01 120 chr3L:15959020-15959140 7.14e-03 120 chr2R:16869388-16869508 9.73e-01 120 chr2L:3092694-3092814 5.20e-01 120 chr3R:23161617-23161737 3.83e-01 120 chr3R:16353374-16353494 5.54e-01 120 chr3L:20441136-20441256 2.28e-01 120 chr3L:9836809-9836929 3.23e-01 120 chrX:11359070-11359190 4.88e-01 120 chr2R:15862799-15862919 9.78e-01 120 chrX:6600072-6600192 4.97e-01 120 chr2L:8570565-8570685 2.84e-02 7_[+2(8.05e-05)]_105 chr3L:14706764-14706884 9.76e-01 120 chr3L:8698917-8699037 1.10e-01 120 chr2R:7663769-7663889 7.82e-01 120 chr2R:18349985-18350105 9.65e-01 120 chr2L:14490155-14490275 9.92e-01 120 chr2R:17095229-17095349 1.26e-01 63_[+1(2.93e-05)]_49 chrX:15626312-15626432 5.55e-01 120 chr3R:16982399-16982519 2.00e-01 8_[+2(8.05e-05)]_104 chr3L:17995412-17995532 6.78e-01 120 chr3R:13382967-13383087 3.41e-01 120 chrX:16781275-16781395 8.77e-01 120 chr3L:19289496-19289616 4.29e-01 26_[+1(5.96e-05)]_86 chrX:11888277-11888397 3.24e-01 120 chr2R:18180172-18180292 1.28e-01 120 chr2L:357904-358024 2.30e-01 3_[+2(2.70e-05)]_109 chr3R:11869345-11869465 8.05e-01 120 chr3R:26952335-26952455 2.11e-01 120 chr3R:14481592-14481712 7.99e-01 120 chrX:18282419-18282539 3.50e-01 120 chr3L:16958743-16958863 6.30e-03 120 chr2R:18800604-18800724 1.74e-01 120 chr2L:14533964-14534084 2.07e-01 120 chr2R:21610105-21610225 8.42e-02 24_[+2(8.05e-05)]_88 chr3L:1031325-1031445 7.96e-01 120 chr3L:8093839-8093959 9.90e-01 120 chr3R:13801815-13801935 3.65e-03 40_[+3(4.32e-06)]_72 chr3R:16228897-16229017 9.87e-01 120 chr3R:19621036-19621156 4.55e-01 120 chr2R:10604098-10604218 2.36e-05 17_[+1(2.93e-05)]_1_[+1(2.93e-05)]_\ 1_[+5(5.57e-06)]_77 chrX:16780399-16780519 6.55e-02 120 chrX:3403520-3403640 8.93e-01 120 chr3R:20985806-20985926 2.67e-01 120 chrX:13401377-13401497 9.99e-01 120 chr3L:17001169-17001289 9.76e-01 120 chr3L:15835287-15835407 2.26e-01 55_[+1(2.93e-05)]_57 chr2R:19463277-19463397 1.00e+00 120 chrX:19498156-19498276 6.94e-02 15_[+1(2.93e-05)]_97 chr3L:8683135-8683255 5.83e-02 120 chr2L:20831214-20831334 9.93e-01 120 chr3L:629817-629937 2.73e-01 52_[+1(5.96e-05)]_7_[+1(9.87e-05)]_\ 45 chr3R:16158131-16158251 4.09e-01 120 chr2L:6527058-6527178 9.91e-01 120 chr2R:6494333-6494453 2.85e-01 120 chr2R:14140737-14140857 1.28e-01 120 chr2L:2242242-2242362 4.80e-01 120 chr3R:24152543-24152663 2.16e-01 120 chr3R:19223544-19223664 9.08e-01 120 chr3L:13925182-13925302 1.89e-02 120 chr3L:21205233-21205353 3.83e-01 120 chr3R:10677355-10677475 6.95e-01 120 chr3R:16230409-16230529 1.10e-02 120 chr2R:6812492-6812612 9.60e-01 120 chr2R:9189417-9189537 2.04e-01 120 chr3L:1298618-1298738 6.84e-01 120 chr3L:17913296-17913416 6.12e-03 120 chr3L:20088942-20089062 8.30e-01 120 chrX:12734480-12734600 1.00e+00 120 chr3L:3334951-3335071 9.94e-01 120 chr2L:3366222-3366342 2.18e-01 72_[+2(2.70e-05)]_40 chr3L:8705075-8705195 1.58e-03 52_[+2(2.70e-05)]_60 chr3L:3942348-3942468 4.58e-01 120 chr2R:18167187-18167307 9.78e-01 120 chr3R:5323773-5323893 7.15e-01 120 chrX:14826135-14826255 9.19e-01 120 chr2L:12593590-12593710 4.43e-01 120 chr3R:26859326-26859446 8.30e-01 120 chr2R:6811121-6811241 2.95e-01 101_[+1(2.93e-05)]_11 chr3R:9939533-9939653 3.37e-01 120 chr3R:4381198-4381318 2.10e-01 120 chr2R:22640263-22640383 7.65e-01 120 chr3R:10388266-10388386 8.92e-01 120 chr3L:18901532-18901652 4.75e-01 120 chr2L:2801161-2801281 9.95e-01 120 chr3L:4363967-4364087 9.84e-02 31_[+1(5.96e-05)]_81 chr2R:20330763-20330883 8.96e-01 120 chrX:19168074-19168194 2.68e-01 120 chr2L:4187783-4187903 9.58e-01 120 chr2R:5782678-5782798 4.57e-01 120 chr2L:10144648-10144768 9.71e-01 120 chr3R:12719732-12719852 8.45e-01 120 chrX:13087437-13087557 2.63e-01 8_[+1(2.93e-05)]_104 chr3R:31636608-31636728 1.95e-01 120 chr2R:17098566-17098686 9.98e-01 120 chr3R:29229040-29229160 8.47e-02 120 chr2L:12004841-12004961 9.24e-01 120 chr3R:29027162-29027282 3.22e-01 120 chr2L:18119833-18119953 9.48e-01 120 chr2R:8149831-8149951 4.34e-01 120 chr3R:9944533-9944653 7.30e-01 120 chr3L:14549331-14549451 9.84e-01 120 chr2R:10429636-10429756 7.75e-01 120 chr3R:26020846-26020966 7.93e-01 120 chr3R:22447382-22447502 1.60e-02 10_[+1(2.93e-05)]_102 chr2R:22062514-22062634 1.16e-01 120 chr2L:13878949-13879069 6.59e-01 120 chr2R:17028222-17028342 8.38e-02 120 chr3R:20548367-20548487 8.92e-01 120 chr2R:16660231-16660351 9.30e-01 120 chr3R:30800723-30800843 1.58e-01 120 chr2R:18351718-18351838 8.31e-01 120 chr3L:19071548-19071668 1.00e+00 120 chrX:19605164-19605284 9.91e-01 120 chr2L:13296093-13296213 7.67e-01 120 chr3R:7129552-7129672 7.13e-01 120 chr3R:23223625-23223745 8.03e-01 120 chr3L:8718794-8718914 2.78e-03 120 chr3R:29062963-29063083 6.78e-02 57_[+2(2.70e-05)]_55 chr2R:18289056-18289176 4.16e-02 27_[+2(2.70e-05)]_85 chr2L:6921880-6922000 9.98e-01 120 chr3L:18022669-18022789 8.71e-01 120 chr2L:21166569-21166689 4.70e-01 120 chr2L:9943640-9943760 3.82e-01 120 chr3L:7860720-7860840 3.79e-05 120 chrX:3538855-3538975 1.00e+00 120 chr3L:3035134-3035254 2.34e-01 71_[+1(2.93e-05)]_41 chr3R:4654674-4654794 9.86e-01 120 chr2R:8152062-8152182 3.01e-01 120 chr3L:7856485-7856605 4.59e-01 120 chr2L:9698558-9698678 7.16e-01 120 chr2R:21091812-21091932 1.00e+00 120 chrX:15306408-15306528 1.00e+00 120 chr2R:17535802-17535922 2.69e-03 108_[+2(2.70e-05)]_4 chr2R:21386519-21386639 5.62e-01 120 chr3L:21058761-21058881 2.71e-04 55_[+1(2.93e-05)]_57 chr3L:17539091-17539211 5.60e-01 120 chr2R:22136922-22137042 7.03e-01 120 chr3R:18301697-18301817 1.00e+00 120 chr3L:544330-544450 8.54e-02 120 chr2R:7539654-7539774 9.08e-01 120 chr2R:21078455-21078575 1.82e-01 8_[+2(2.70e-05)]_104 chr2R:10734420-10734540 2.49e-01 25_[+1(5.96e-05)]_87 chr2L:8704792-8704912 7.86e-04 14_[+1(2.93e-05)]_98 chr2R:16849580-16849700 9.76e-01 120 chr2R:9413269-9413389 8.95e-01 120 chrX:10474660-10474780 8.72e-01 120 chr2L:252342-252462 4.85e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************