******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/grn.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:8207404-8207524 1.0000 120 chr3R:8215667-8215787 1.0000 120 chr3R:26803243-26803363 1.0000 120 chr3R:18144996-18145116 1.0000 120 chr3R:30204425-30204545 1.0000 120 chr3L:11227847-11227967 1.0000 120 chr2L:6696368-6696488 1.0000 120 chrX:6011008-6011128 1.0000 120 chr2L:19429833-19429953 1.0000 120 chr3R:18075154-18075274 1.0000 120 chrX:19316820-19316940 1.0000 120 chr2L:3777346-3777466 1.0000 120 chr3R:19312077-19312197 1.0000 120 chrX:5717847-5717967 1.0000 120 chr3L:12666422-12666542 1.0000 120 chr3R:8145098-8145218 1.0000 120 chr2L:19359061-19359181 1.0000 120 chr3R:8170870-8170990 1.0000 120 chr3R:8138210-8138330 1.0000 120 chr3R:22397832-22397952 1.0000 120 chr3R:19102608-19102728 1.0000 120 chr3L:15210421-15210541 1.0000 120 chrX:7295814-7295934 1.0000 120 chrX:6612626-6612746 1.0000 120 chr2R:16178002-16178122 1.0000 120 chr3R:29521019-29521139 1.0000 120 chr3R:18994203-18994323 1.0000 120 chr3L:10350025-10350145 1.0000 120 chrX:18285354-18285474 1.0000 120 chrX:2464573-2464693 1.0000 120 chr3R:8198441-8198561 1.0000 120 chr3R:8214527-8214647 1.0000 120 chrX:11875570-11875690 1.0000 120 chr3L:17980479-17980599 1.0000 120 chr3L:14423777-14423897 1.0000 120 chr3L:11393156-11393276 1.0000 120 chrX:15522525-15522645 1.0000 120 chr3R:10606084-10606204 1.0000 120 chr2R:23038138-23038258 1.0000 120 chr3L:6385120-6385240 1.0000 120 chr3R:8214831-8214951 1.0000 120 chr2L:4373001-4373121 1.0000 120 chr3R:8145935-8146055 1.0000 120 chr2L:6694584-6694704 1.0000 120 chr3R:24596357-24596477 1.0000 120 chrX:2195350-2195470 1.0000 120 chr2R:12538684-12538804 1.0000 120 chr2R:16806392-16806512 1.0000 120 chr3R:22165270-22165390 1.0000 120 chr2L:6464317-6464437 1.0000 120 chr2L:7679715-7679835 1.0000 120 chr3R:23668691-23668811 1.0000 120 chr2L:18145087-18145207 1.0000 120 chr3L:21256492-21256612 1.0000 120 chr2R:11748799-11748919 1.0000 120 chrX:1385576-1385696 1.0000 120 chr2R:22677589-22677709 1.0000 120 chr2L:15310489-15310609 1.0000 120 chr3R:8227483-8227603 1.0000 120 chr2L:17395107-17395227 1.0000 120 chr3R:26934012-26934132 1.0000 120 chrX:8260410-8260530 1.0000 120 chr2R:19817879-19817999 1.0000 120 chr2L:14268776-14268896 1.0000 120 chr2L:7294069-7294189 1.0000 120 chr3L:1404142-1404262 1.0000 120 chr3R:6344020-6344140 1.0000 120 chr2R:23040276-23040396 1.0000 120 chr3R:23217270-23217390 1.0000 120 chr3R:23056891-23057011 1.0000 120 chr2R:12649795-12649915 1.0000 120 chr2R:10080893-10081013 1.0000 120 chr2R:23208420-23208540 1.0000 120 chr3R:25626124-25626244 1.0000 120 chr3L:1448257-1448377 1.0000 120 chr3R:29523039-29523159 1.0000 120 chr3R:19826533-19826653 1.0000 120 chr2R:19838231-19838351 1.0000 120 chrX:11688290-11688410 1.0000 120 chr2L:15107345-15107465 1.0000 120 chrX:19240335-19240455 1.0000 120 chr2L:6500796-6500916 1.0000 120 chr2R:13551986-13552106 1.0000 120 chr3R:14103104-14103224 1.0000 120 chrX:4390011-4390131 1.0000 120 chr2R:21358438-21358558 1.0000 120 chr2R:20045622-20045742 1.0000 120 chr2R:23212486-23212606 1.0000 120 chr3L:21284760-21284880 1.0000 120 chr3L:2457041-2457161 1.0000 120 chr2R:13938195-13938315 1.0000 120 chrX:4556082-4556202 1.0000 120 chrX:4608706-4608826 1.0000 120 chr2R:13500329-13500449 1.0000 120 chr3R:21823724-21823844 1.0000 120 chr3L:3875600-3875720 1.0000 120 chrX:600737-600857 1.0000 120 chr3R:14032925-14033045 1.0000 120 chr2L:19333198-19333318 1.0000 120 chr2L:14283062-14283182 1.0000 120 chr3L:14668788-14668908 1.0000 120 chr2L:6268317-6268437 1.0000 120 chr3R:21241466-21241586 1.0000 120 chrX:1847971-1848091 1.0000 120 chr3R:16009145-16009265 1.0000 120 chr2L:7877226-7877346 1.0000 120 chr2L:12365382-12365502 1.0000 120 chr2R:18239401-18239521 1.0000 120 chr3L:8706448-8706568 1.0000 120 chr3R:26907212-26907332 1.0000 120 chrX:7222596-7222716 1.0000 120 chr3R:13261859-13261979 1.0000 120 chr3L:19049803-19049923 1.0000 120 chr2R:17504503-17504623 1.0000 120 chr3L:8712806-8712926 1.0000 120 chr2L:14266157-14266277 1.0000 120 chr2L:6707581-6707701 1.0000 120 chrX:5988923-5989043 1.0000 120 chr2L:2837883-2838003 1.0000 120 chr3R:31712441-31712561 1.0000 120 chr3L:15662913-15663033 1.0000 120 chrX:4454805-4454925 1.0000 120 chrX:8496776-8496896 1.0000 120 chr2L:18780404-18780524 1.0000 120 chrX:10115975-10116095 1.0000 120 chr3L:13065764-13065884 1.0000 120 chr3R:7142727-7142847 1.0000 120 chr3R:31605964-31606084 1.0000 120 chr2L:3550703-3550823 1.0000 120 chr3L:13253231-13253351 1.0000 120 chr3R:6643694-6643814 1.0000 120 chrX:2655593-2655713 1.0000 120 chr3L:17924052-17924172 1.0000 120 chr2R:19810482-19810602 1.0000 120 chr3R:8202733-8202853 1.0000 120 chr2L:495486-495606 1.0000 120 chrX:5956808-5956928 1.0000 120 chr2R:15894916-15895036 1.0000 120 chrX:7296100-7296220 1.0000 120 chr3R:21414275-21414395 1.0000 120 chrX:6026091-6026211 1.0000 120 chr2R:12401188-12401308 1.0000 120 chr3L:5618573-5618693 1.0000 120 chr3R:12363692-12363812 1.0000 120 chr2L:6255424-6255544 1.0000 120 chr3R:8210966-8211086 1.0000 120 chr3L:20946165-20946285 1.0000 120 chr2R:8568697-8568817 1.0000 120 chr2L:5247557-5247677 1.0000 120 chr2R:11533306-11533426 1.0000 120 chr3L:15755218-15755338 1.0000 120 chr3R:10757295-10757415 1.0000 120 chr3L:18260922-18261042 1.0000 120 chr2L:4893787-4893907 1.0000 120 chr2L:533845-533965 1.0000 120 chr3R:14480289-14480409 1.0000 120 chr3R:29317686-29317806 1.0000 120 chr3L:15303766-15303886 1.0000 120 chr3L:12838078-12838198 1.0000 120 chr2R:11494722-11494842 1.0000 120 chr2L:13880911-13881031 1.0000 120 chr2L:5988550-5988670 1.0000 120 chr3L:6779567-6779687 1.0000 120 chr2L:9123817-9123937 1.0000 120 chr2L:9944174-9944294 1.0000 120 chr3R:31564755-31564875 1.0000 120 chr3L:20196452-20196572 1.0000 120 chr3L:14207495-14207615 1.0000 120 chr3L:6883559-6883679 1.0000 120 chr2R:7430862-7430982 1.0000 120 chr3R:8192657-8192777 1.0000 120 chr3R:30892808-30892928 1.0000 120 chr2R:7657060-7657180 1.0000 120 chr3L:17966702-17966822 1.0000 120 chrX:9044979-9045099 1.0000 120 chr2L:495687-495807 1.0000 120 chr2R:19125029-19125149 1.0000 120 chr3R:15644507-15644627 1.0000 120 chr3R:21419397-21419517 1.0000 120 chr2L:15408143-15408263 1.0000 120 chr2R:6681723-6681843 1.0000 120 chr2L:2453957-2454077 1.0000 120 chr3L:21510554-21510674 1.0000 120 chr3R:29868070-29868190 1.0000 120 chr3L:13108502-13108622 1.0000 120 chr3R:16600890-16601010 1.0000 120 chr2L:8530425-8530545 1.0000 120 chr2L:3583907-3584027 1.0000 120 chr2L:8009940-8010060 1.0000 120 chr2L:371886-372006 1.0000 120 chr3R:15328598-15328718 1.0000 120 chr3L:11236613-11236733 1.0000 120 chr2L:13789117-13789237 1.0000 120 chr3R:12259968-12260088 1.0000 120 chr2R:7373328-7373448 1.0000 120 chr3L:12585142-12585262 1.0000 120 chr3R:10656558-10656678 1.0000 120 chr2R:7476991-7477111 1.0000 120 chr2R:24587716-24587836 1.0000 120 chr2R:16814803-16814923 1.0000 120 chrX:18985602-18985722 1.0000 120 chr3L:12601329-12601449 1.0000 120 chr2L:8421599-8421719 1.0000 120 chr3L:10997412-10997532 1.0000 120 chr2R:14780214-14780334 1.0000 120 chrX:7534662-7534782 1.0000 120 chr2L:13511009-13511129 1.0000 120 chr3R:13259779-13259899 1.0000 120 chr3R:13907497-13907617 1.0000 120 chrX:17506444-17506564 1.0000 120 chrX:9869483-9869603 1.0000 120 chr3L:1203314-1203434 1.0000 120 chr2R:24740205-24740325 1.0000 120 chr3L:16892057-16892177 1.0000 120 chrX:6062313-6062433 1.0000 120 chr2R:15667478-15667598 1.0000 120 chr2L:11325064-11325184 1.0000 120 chr3L:12695058-12695178 1.0000 120 chrX:4502695-4502815 1.0000 120 chr2R:21632941-21633061 1.0000 120 chr3R:9926393-9926513 1.0000 120 chrX:8450608-8450728 1.0000 120 chr3L:15227644-15227764 1.0000 120 chr3R:18079479-18079599 1.0000 120 chr3R:8203754-8203874 1.0000 120 chr2L:19951939-19952059 1.0000 120 chr3L:4341240-4341360 1.0000 120 chr3L:12652426-12652546 1.0000 120 chr3R:10553754-10553874 1.0000 120 chr3L:2821643-2821763 1.0000 120 chr3R:9432986-9433106 1.0000 120 chr2L:14237993-14238113 1.0000 120 chr2L:498529-498649 1.0000 120 chr2R:18603051-18603171 1.0000 120 chr3L:1675572-1675692 1.0000 120 chrX:5744356-5744476 1.0000 120 chr3L:3095189-3095309 1.0000 120 chr2R:9407381-9407501 1.0000 120 chr3R:19370509-19370629 1.0000 120 chr2R:22829170-22829290 1.0000 120 chr3R:23711311-23711431 1.0000 120 chr3R:6294144-6294264 1.0000 120 chr2R:15666844-15666964 1.0000 120 chr2R:19370886-19371006 1.0000 120 chr3R:22531959-22532079 1.0000 120 chr3R:29984058-29984178 1.0000 120 chr3L:7961688-7961808 1.0000 120 chr2L:6349183-6349303 1.0000 120 chr2R:14347905-14348025 1.0000 120 chr3R:29523900-29524020 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_grn/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/grn.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.28 C 0.224 G 0.225 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.28 C 0.224 G 0.225 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CMGATAAR MEME-1 width = 8 sites = 211 llr = 1208 E-value = 1.1e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 15:a:763 pos.-specific C 53:::311 probability G 2:a:::25 matrix T 22::a:11 bits 2.2 * 1.9 * * 1.7 *** 1.5 *** Relative 1.3 *** Entropy 1.1 *** (8.3 bits) 0.9 **** 0.6 **** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GC C A sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18079479-18079599 81 1.90e-05 ACACTGATCT CAGATAAG ACAGTCAAAC chr3L:1203314-1203434 79 1.90e-05 CTAGATACGG CAGATAAG ATCTAGTCGC chr3R:10757295-10757415 40 1.90e-05 AGTGAGATTG CAGATAAG CCCAATCTAC chr2L:6707581-6707701 28 1.90e-05 GGCGCCAATG CAGATAAG ATCTCCCCAG chrX:4390011-4390131 50 1.90e-05 AAACGAGCAT CAGATAAG CGCCAGCCAC chrX:1385576-1385696 80 1.90e-05 CTGATCTGGC CAGATAAG AGGGGCAGAA chr2L:3777346-3777466 86 1.90e-05 CTTATTAGAT CAGATAAG TTCTTTATTG chr2L:19429833-19429953 20 1.90e-05 TTGCAATCGG CAGATAAG CTAAAGGCAC chr2R:7373328-7373448 76 3.41e-05 ATGATGTGTG CCGATAAG TCTCAGTTCT chr3L:14668788-14668908 39 3.41e-05 TATAGGAGTG CCGATAAG ACTGACGAAG chr3L:2457041-2457161 68 3.41e-05 TACTAATCTC CCGATAAG ATAGCCAACG chr2R:13551986-13552106 60 3.41e-05 AGATGGGAAT CCGATAAG AGTTGTGTAT chrX:11688290-11688410 49 3.41e-05 GGTTTGTTCT CCGATAAG GAAGGAGCTC chr2R:19838231-19838351 63 3.41e-05 TATTAAGTGG CCGATAAG CATCTAGGGG chr2R:10080893-10081013 80 3.41e-05 CTACTGATCG CCGATAAG CTCTAATGGA chr3R:26934012-26934132 104 3.41e-05 TTCGATGAAG CCGATAAG ATATCACTT chr2L:4373001-4373121 113 3.41e-05 ATTTCCACAC CCGATAAG chr3R:30204425-30204545 69 3.41e-05 AGGCGATGAA CCGATAAG CTGATATATA chr3R:26803243-26803363 53 3.41e-05 ATTAAAGTCA CCGATAAG TCGAAAATGT chrX:9044979-9045099 56 4.93e-05 cggatcggat cagatcag attagatcag chr3R:29523900-29524020 80 1.10e-04 TCGATCTCGG CTGATAAG AGCGCTCGTA chr3L:12652426-12652546 67 1.10e-04 TCAGATTGAG GAGATAAG CAGCGGCCGG chrX:9869483-9869603 72 1.10e-04 CATCTGATAC CTGATAAG ATGCCAGCCC chr3R:13259779-13259899 77 1.10e-04 ATAAGTTCCG CTGATAAG GGCATTCACA chr2L:371886-372006 29 1.10e-04 TACCTGTGAA GAGATAAG AATCGATTTC chr3R:8192657-8192777 73 1.10e-04 GTCCACAATT GAGATAAG ATTGCCAGCG chr3R:6643694-6643814 93 1.10e-04 CGATAAGGGG CTGATAAG AGAGGCAATC chr2L:3550703-3550823 31 1.10e-04 ATGTCATTTG CTGATAAG CAACTGATAT chr2R:23212486-23212606 79 1.10e-04 CGATCGCGCa cagataaa gatacagaga chr3R:14103104-14103224 35 1.10e-04 CCAAACTTAT CTGATAAG CCGCGGCGAC chrX:19240335-19240455 65 1.10e-04 GATACAGATC GAGATAAG CAAAGCCCAG chr3R:29523039-29523159 72 1.10e-04 TTTTGAGATA CAGATAAA GATCTCCATC chr2R:12649795-12649915 3 1.10e-04 GA CTGATAAG CTAAAAGGTT chr3L:1404142-1404262 45 1.10e-04 TGCTGTGCAG GAGATAAG CAAGTGCAGT chr3R:8145098-8145218 88 1.10e-04 CATTTCCAAT CAGATAAA CACGCAGCCG chr2R:18603051-18603171 43 1.61e-04 TGTGATTCTG TAGATAAG GCCTTTGGAA chr3L:2821643-2821763 93 1.61e-04 AAAGATCGAT TAGATAAG CAGAATAAAC chr2L:8421599-8421719 57 1.61e-04 AAAAACCGGC TAGATAAG CCGGTCGTAT chr3R:12363692-12363812 80 1.61e-04 ATTTTGATAG TAGATAAG CTTTAGTATC chr3L:17924052-17924172 109 1.61e-04 GAAACTggtt ccgatcag atcg chr2R:13938195-13938315 109 1.61e-04 ATGTCTATCG CAGATAGG CGGG chr3R:25626124-25626244 63 1.61e-04 GAGATTAGAT TAGATAAG CAGAAGTAAC chr2L:7679715-7679835 48 1.61e-04 TATCGCGAAG TAGATAAG CAAGGTCGTA chr3R:8138210-8138330 63 1.61e-04 TATGAAGATT TAGATAAG CGTCTCATTT chr3R:8170870-8170990 21 1.61e-04 GCGGCCCATC TAGATAAG GCCAAAAAAG chr2L:3583907-3584027 23 1.95e-04 ATCTAGGGCG GCGATAAG ATCGCCAAGA chr3R:26907212-26907332 94 1.95e-04 TGTTGATTGT CCGATAAA CATTTTATTT chr3L:15210421-15210541 55 1.95e-04 GAGTCGGAGG CCGATAAA CGAGTTGATT chr3R:8215667-8215787 72 1.95e-04 TTAATCGGCC GCGATAAG AACCCGAACC chr2R:9407381-9407501 32 2.25e-04 TCAGATGCAT CCGATAGG ATGCATAGAT chr2L:11325064-11325184 90 2.25e-04 TCATAAATAT CCGATAGG GCTTATTAGT chrX:6062313-6062433 74 2.25e-04 ATCGGGCAAA TCGATAAG CGCCGCGACA chrX:5988923-5989043 19 2.25e-04 CGAAAGACAG TCGATAAG ATTAACGTCA chr2L:14266157-14266277 30 2.74e-04 gatactcgac cagatcaa aacgatacga chr2R:21358438-21358558 15 2.74e-04 CAGATCAAAA CAGATCAA CGGATCGCAG chrX:15522525-15522645 84 2.74e-04 CTATCTACTT GAGATCAG TCCAGTTTTG chrX:6612626-6612746 39 2.74e-04 CTGATCCCAT CTGATCAG TTTTGAGATC chr2L:19359061-19359181 47 2.74e-04 GAAATGATCA CAGATCAA CGTGATAAAC chr3R:18144996-18145116 45 2.74e-04 CATCGTTGAT CTGATCAG TTGGCTGTAC chr2R:22829170-22829290 44 3.81e-04 AAGCATGATC CAGATAAT TGGCATTGCC chr3R:19370509-19370629 50 3.81e-04 AAGCAATATG GAGATAAA ACCACCACAG chr2L:13789117-13789237 57 3.81e-04 GGTTACCGAT CTGATAAA AGACCCATTG chr3R:15328598-15328718 27 3.81e-04 AATTGGAAGA GAGATAAA GATCTGCTCC chr2L:15408143-15408263 41 3.81e-04 ATCACTGATT GTGATAAG CGATAACTGT chr3L:20196452-20196572 69 3.81e-04 TTGATAACGA CAGATATG CCATCTCCAG chr3L:13253231-13253351 92 3.81e-04 TGATGAGCCG CTGATAAA GATTTGGATG chr2L:14283062-14283182 82 3.81e-04 TTGGTCGAAA CTGATAAA AACGTCAAAG chr2R:13500329-13500449 41 3.81e-04 GGAGTTCGAA CAGATATG CGTAACATAC chr3R:23056891-23057011 39 3.81e-04 CCACAAGTTG CAGATAAT CAATAGATTG chr2L:14268776-14268896 22 3.81e-04 ACTTTCGAGA CTGATAAA CGATCGTTGA chr2R:11748799-11748919 53 3.81e-04 ATCAATCTAT GAGATAAA TCTTATTTTC chr2L:18145087-18145207 53 3.81e-04 GCATTAACCG CAGATAAT TATTATCATT chr3L:15755218-15755338 54 4.45e-04 GCGTATCTGT CAGATACG AGATACTTTT chr2L:7877226-7877346 48 4.45e-04 GCAGCAGATT CAGATACG AAGATACGTA chr3R:23217270-23217390 42 4.45e-04 AAACCCTCCA CAGATAAC AATTACAATC chr3R:18075154-18075274 92 4.45e-04 TACAGATCGT CAGATCGG GAATCGCGAG chr2R:14347905-14348025 43 5.73e-04 TGGTTTCCAA GAGATAGG CCGCCCTTTT chr3L:12695058-12695178 65 5.73e-04 AAGAGCCGCA TTGATAAG AAATCGTACG chr2R:14780214-14780334 86 5.73e-04 GCATCAGACG CAGATAGA ATGGCCACAA chr2L:5247557-5247677 38 5.73e-04 gatacaaata cagataga gatGCGGATG chrX:5956808-5956928 59 5.73e-04 GCGTCGATTG CTGATAGG TGGTGGTGGG chr2L:18780404-18780524 52 5.73e-04 CAAAATAAAA TAGATAAA GCCAATGACT chrX:4454805-4454925 112 5.73e-04 GCTATCAGTG GCGATCAG C chr2L:15107345-15107465 81 5.73e-04 CTGGGCATCT GAGATAGG TATCAGCTTA chr3L:10350025-10350145 83 5.73e-04 CAAAGATACA GAGATAGG CAGACACTCA chr3L:12666422-12666542 28 5.73e-04 CTGGGAATTA TAGATAAA TGATCAAAAG chr3L:3095189-3095309 95 6.25e-04 TCGACGAGTG CCGATAAT TTCAAATTAA chr2L:9123817-9123937 24 6.25e-04 CAATCATGAT CCGATAAT CACAACAAAT chr3L:13065764-13065884 51 6.25e-04 TATTTGTTTA GCGATAAA CAATAATTAA chrX:10115975-10116095 41 6.25e-04 TAACGATGTG CCGATAAT GAAAGAGCAA chr3R:13261859-13261979 106 6.25e-04 ATAGCTGGCC CCGATATG TAGACCC chrX:8260410-8260530 35 6.25e-04 CCATCCCCAC CCGATATG ATCCCATCTG chrX:6011008-6011128 93 6.25e-04 ATATCTGGGC CCGATAAT CGGATGTCTC chr2L:14237993-14238113 87 6.95e-04 AATCTCGAAC TCGATCAG AATGCTAATG chr3L:16892057-16892177 39 6.95e-04 TGTTTGCCCT CCGATCGG TCAGATTGAT chr3R:16600890-16601010 72 6.95e-04 gatacataga tagatagg tagatagata chrX:7296100-7296220 103 6.95e-04 gatggattga tagatagg tagatagata chr3R:8198441-8198561 68 6.95e-04 ATCACCGAAA TCGATCAG TTAAGCATAA chr2R:19817879-19817999 78 7.45e-04 TAACGGGTGT GCGATAGG AAAATAATAG chr2L:498529-498649 3 8.54e-04 TG CTGATCAA AACGAGGCAA chr2R:21632941-21633061 49 8.54e-04 ACCCTGTGCG CAGATCAT GGCTCCACCA chr2L:2453957-2454077 56 8.54e-04 TTTTTAGTAC AAGATAAG ATGGTAATCT chr2R:6681723-6681843 73 8.54e-04 ATCTCTCTCT AAGATAAG ACAAAGCAAG chr2L:5988550-5988670 31 8.54e-04 ATATTGCTTT CAGATCAT TTATGTGCAG chr3L:20946165-20946285 71 8.54e-04 ATACGAATCT AAGATAAG ATacacacaa chr2R:17504503-17504623 102 8.54e-04 TATCATCAAT CTGATCAA AGGCAAAGAC chr2L:15310489-15310609 32 8.54e-04 TATACGTGAC GAGATCAA GGGAACAGGA chr3R:8214831-8214951 10 8.54e-04 AACGAAGGA CAGatcat caacatcatc chr3R:8214527-8214647 28 8.54e-04 TTCAATTTAC AAGATAAG GGCCCACAAC chr3R:22397832-22397952 83 8.54e-04 TTTTAGATGG AAGATAAG ATGCGATGTG chrX:8450608-8450728 59 1.02e-03 TCAATCCCAC CTGATAAT CTTATCTTCC chr2R:19125029-19125149 65 1.02e-03 CGATTATATA GAGATATG TGCACGGTAT chr3R:31564755-31564875 94 1.02e-03 TCGGTAACTC GAGATAAT CCTCTTGATT chr3R:31712441-31712561 75 1.02e-03 ATATCTATGC CAGATATA TAATCTTAGA chr3L:19049803-19049923 48 1.02e-03 GCTGCCGTAT CTGATAAT GATCAACTGC chr2L:6268317-6268437 74 1.02e-03 ATTTGAGATT CTGATATG GTTTATTGCT chr3L:3875600-3875720 58 1.02e-03 TGCAATCCGA GAGATATG TAGTTTCGGG chr3R:6294144-6294264 33 1.19e-03 GCGTATCTAA CAGATCGA TCAACAACAG chr3R:9926393-9926513 53 1.19e-03 gatgcagata cagataca gataGCCTTT chr2R:24740205-24740325 100 1.19e-03 GATGGCGATG GAGATACG CTTAAATGCG chr3R:12259968-12260088 80 1.19e-03 ATGCAACTGT GAGATACG AATGGCCACA chr3R:21419397-21419517 71 1.19e-03 ctgatcggat ctgatcgg atAGGATGGT chr3L:14207495-14207615 61 1.19e-03 GCATTTAAAA CTGATAAC CAAGTGAGCT chr2L:13880911-13881031 45 1.19e-03 TAGCCAGCCA GAGATCGG GCCAAGAGAT chr2R:11533306-11533426 41 1.19e-03 CATCAACGGC CAGATACA GATACACATG chr3R:8210966-8211086 57 1.19e-03 TAGCGGTACG GAGATCGG GTCTGGGGTA chr2R:12401188-12401308 77 1.19e-03 CGCCGGCGGC GAGATCGG TATCATCATC chr3R:31605964-31606084 51 1.19e-03 AAGAGAGAGT GAGATCGG TGCTGCAGAT chr3L:8706448-8706568 5 1.19e-03 ATAT CAGATACA AGGCCTCTGG chr2L:6500796-6500916 70 1.19e-03 GGAACCTTAA CTGATAAC GCTGTGATTA chr2R:23040276-23040396 62 1.19e-03 gatccagatc cagatcga gatcggaatc chr3R:22165270-22165390 80 1.19e-03 AGGTTAGGAT CTGATACG GGAATCGTTC chr3R:18994203-18994323 110 1.19e-03 CAGAGATACC CAGATACA CAC chr2R:16178002-16178122 69 1.19e-03 ATCTCAAACA CTGATAAC ACACAACGAG chr3L:11227847-11227967 63 1.19e-03 AATCTAGTGT CAGATACA ATCGCCGAAT chr3R:10553754-10553874 62 1.40e-03 CATTAACGTT TTGATAAA AGATCTTTAT chr2L:8009940-8010060 63 1.40e-03 AATCAGCTGA ACGATAAG CCCAATGTTT chr2L:533845-533965 106 1.40e-03 ATTTAACAAA TTGATAAA CAATTGT chr2R:15894916-15895036 64 1.40e-03 ATTTCAAGCG TAGATAAT CGAGATTGTA chrX:600737-600857 49 1.40e-03 GAATTTGGCA TTGATAAA GCTGTGGACG chr2L:17395107-17395227 48 1.40e-03 CATCTTCCCT CAGATAGT GAAAATGTCA chr3R:24596357-24596477 113 1.40e-03 gatagataga gagataga chrX:11875570-11875690 88 1.40e-03 GGCAATCGGC CAGATAGT CGGGCATCTG chr2R:16814803-16814923 78 1.54e-03 CTGGCTCCAT TAGATAAC CCCAATGGCT chr3R:7142727-7142847 42 1.54e-03 CGATTGGAAG CCGATCCG AGTTGATATA chr2L:7294069-7294189 3 1.54e-03 at ccgatccg atcccatcTT chr2L:6464317-6464437 25 1.54e-03 CCATCTAAAC TAGATAAC GACTATCTTG chrX:5717847-5717967 83 1.54e-03 TCATCGGTCG GCGATAAT CGCACACACC chr3R:23711311-23711431 30 1.67e-03 TCTGCTGTAG TCGATCAA TTAAAGATAA chr2R:24587716-24587836 82 1.67e-03 TGAGTGGATG TAGATAGA GTGCTGGTCT chr3R:30892808-30892928 82 1.67e-03 aatctcgatc tcgatcaa atctccacct chr2R:7430862-7430982 48 1.67e-03 ATCGCGCAAT GCGATAAC TCAACCTGTT chr3R:29317686-29317806 82 1.67e-03 TCTATTGATA GCGATAAC GCTTGAACGA chrX:6026091-6026211 90 1.67e-03 GACACGCGAT TAGATAGA AGATAGGGAG chr3R:23668691-23668811 84 1.67e-03 CACCCAGATC TAGATAGA CGGGGCAAAT chrX:19316820-19316940 74 1.67e-03 gataaatata tagataga GGGCCCCGAT chr3R:29521019-29521139 112 1.76e-03 ATGCCTTGAT GCGATAGA T chr3R:19312077-19312197 57 1.76e-03 GACGAGCCCG GCGATAGA CTAATGAAGA chr3L:11236613-11236733 59 1.97e-03 GCCACTGATT GAGATCTG TGGCGAAAGT chr3R:15644507-15644627 36 1.97e-03 TCTCACTTAT CTGATCAT TGAGTGACTG chr3R:14480289-14480409 82 1.97e-03 CGCAGCTGAC AAGATAAA GTTGTACCAC chr2L:6255424-6255544 57 1.97e-03 TATTAACCCA ATGATAAG ATCCGTATTA chr2L:495486-495606 27 1.97e-03 TTTTTATCAG CTGATCTG ATGGCAAGAT chrX:8496776-8496896 45 1.97e-03 tatttgtatc tcgatcgg tatctgtatc chr3L:15662913-15663033 65 1.97e-03 GTCCATGATC TCGATAAC AAACAAGACC chrX:4556082-4556202 47 1.97e-03 GATTTGGTTG TCGATCGG GCGTCGCTTC chr3L:4341240-4341360 44 2.18e-03 AGATTGAAGG CTGATCCG ATTGATTAAA chr3L:15227644-15227764 63 2.18e-03 AATGGCGATC GAGATATA CGAGCAGGTC chr3L:17966702-17966822 112 2.18e-03 ATATGTACAA GAGATATA A chr3R:21414275-21414395 53 2.18e-03 AAAGGCAGTG GAGATCAC AGCGTCGAGA chrX:7295814-7295934 6 2.18e-03 CGACA GAGATCCG ATCCCATCCG chrX:17506444-17506564 52 2.44e-03 TTTTTAATCT CAGATCGT AATCGTAATC chr3R:13907497-13907617 9 2.44e-03 CCCTCCCC CAGATCGT AAAAGCGTCA chrX:7534662-7534782 63 2.44e-03 TCAATGATCG GAGATACA AGATACAAGA chr2L:9944174-9944294 67 2.44e-03 AGCCATATCT TAGATCAT GCGATCGCAA chr3R:19102608-19102728 60 2.44e-03 GCTAGCCCTA ACGATCAG CAGCACTGCC chr3L:1675572-1675692 40 2.70e-03 CATAATTATG CAGATCGC CGTGTAGAAG chr3L:21510554-21510674 104 2.70e-03 TTCTTCCGGT TTGATAAT TAAACTGAT chr2R:20045622-20045742 45 2.70e-03 CTACGTGATT TTGATATG ATTTTCACTC chr2R:15667478-15667598 46 2.91e-03 TCGTAATCAG TTGATAAC CAATTTGAAT chr2L:12365382-12365502 18 2.91e-03 CTCGTTTAGC TAGATACA TAGATGTAGA chr2R:23038138-23038258 84 2.91e-03 ATCTCGGCCC CCGATCCA CGGGCGGTGG chr3R:29984058-29984178 42 3.07e-03 cagatgtatc tcgatctg catcggtgtc chr3L:12585142-12585262 110 3.07e-03 AAAATATTTC TCGATCAT CGG chr2R:11494722-11494842 50 3.07e-03 ACATAGATCC CCGATATC GTTATCGAAC chr3R:8202733-8202853 86 3.07e-03 GTCACTGTTG TCGATCAT TTTTATGTTG chr2R:22677589-22677709 37 3.07e-03 CTGGCTATCT GCGATCGA AGCCCAAGTT chr3R:8203754-8203874 93 3.43e-03 TGCAGCTGAA TCGATCGA TGGATTTAAG chr3R:29868070-29868190 83 3.43e-03 GGCATATCAA GAGATCTA TGCGGAAGTT chr2R:8568697-8568817 70 3.43e-03 TCCTGTGATT CTGATCTA ACATATATGA chr2R:18239401-18239521 10 3.43e-03 AGGTTTGTT CTGATCTA TCGGACATGG chrX:2464573-2464693 58 3.43e-03 ATCATGAACG CTGATCTA TGACTCGAGC chr2L:13511009-13511129 108 3.72e-03 ACAACACATA AAGATAAC ACCTC chrX:18985602-18985722 44 3.72e-03 AAATGCATTT GAGATTAG GATCGGAGAT chr2L:2837883-2838003 85 3.72e-03 GATTCAGTGG GAGATTAG GGATCACTGC chrX:2195350-2195470 56 3.72e-03 TGATAGCTCC CTGATATT GATGTTGACT chr3L:21284760-21284880 37 4.00e-03 TCGGCATTAT CTGATATC TGTGGTGCGG chrX:18285354-18285474 11 4.00e-03 TAATATGCCA AAGATAGA GCGACAGAGA chrX:4608706-4608826 79 4.28e-03 GGTCAGATGA TTGATATA GAAATTGTTG chr2L:6694584-6694704 62 4.53e-03 ATCAGTATCT CCGATCTC TAGATGGTAA chr3L:21256492-21256612 57 4.68e-03 GTTTATCACT TCGATCTA GCCACTCTAT chr2R:19370886-19371006 80 4.85e-03 AATATTTATG TTGATAGC ACAAGAGCAC chr3L:8712806-8712926 45 5.06e-03 GCGATGTCCG ATGATAAT GTGTGAGCCA chr3R:21241466-21241586 7 5.06e-03 ATTATT AAGATATA CTCGCTATCA chr2R:7657060-7657180 2 5.38e-03 T CTGATTAA AGAACACTTA chr3L:15303766-15303886 21 5.38e-03 GCAACCGAAC CAGATTTG TTTAATCGGC chr3R:8145935-8146055 82 5.38e-03 ATCTGCGATG CTGATTAA CTGATTTATA chr3R:10606084-10606204 80 5.38e-03 CCGTCGGCTG AAGATACA CTTCGCCTCT chr3R:16009145-16009265 52 5.61e-03 ACTCCAAGTG CTGATCCC AATCAACCCC chr3L:14423777-14423897 75 5.90e-03 TGTCTGGGGT GCGATCTT TATCGGGGCA chr3L:1448257-1448377 94 6.21e-03 AGCATCGCAT CCGATTCG ATTCTCTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18079479-18079599 1.9e-05 80_[+1]_32 chr3L:1203314-1203434 1.9e-05 78_[+1]_34 chr3R:10757295-10757415 1.9e-05 39_[+1]_73 chr2L:6707581-6707701 1.9e-05 27_[+1]_85 chrX:4390011-4390131 1.9e-05 49_[+1]_63 chrX:1385576-1385696 1.9e-05 79_[+1]_33 chr2L:3777346-3777466 1.9e-05 85_[+1]_27 chr2L:19429833-19429953 1.9e-05 19_[+1]_93 chr2R:7373328-7373448 3.4e-05 75_[+1]_37 chr3L:14668788-14668908 3.4e-05 38_[+1]_74 chr3L:2457041-2457161 3.4e-05 67_[+1]_45 chr2R:13551986-13552106 3.4e-05 59_[+1]_53 chrX:11688290-11688410 3.4e-05 48_[+1]_64 chr2R:19838231-19838351 3.4e-05 62_[+1]_50 chr2R:10080893-10081013 3.4e-05 79_[+1]_33 chr3R:26934012-26934132 3.4e-05 103_[+1]_9 chr2L:4373001-4373121 3.4e-05 112_[+1] chr3R:30204425-30204545 3.4e-05 68_[+1]_44 chr3R:26803243-26803363 3.4e-05 52_[+1]_60 chrX:9044979-9045099 4.9e-05 55_[+1]_57 chr3R:29523900-29524020 0.00011 79_[+1]_33 chr3L:12652426-12652546 0.00011 66_[+1]_46 chrX:9869483-9869603 0.00011 71_[+1]_41 chr3R:13259779-13259899 0.00011 76_[+1]_36 chr2L:371886-372006 0.00011 28_[+1]_84 chr3R:8192657-8192777 0.00011 72_[+1]_40 chr3R:6643694-6643814 0.00011 92_[+1]_20 chr2L:3550703-3550823 0.00011 30_[+1]_82 chr2R:23212486-23212606 0.00011 78_[+1]_34 chr3R:14103104-14103224 0.00011 34_[+1]_78 chrX:19240335-19240455 0.00011 64_[+1]_48 chr3R:29523039-29523159 0.00011 71_[+1]_41 chr2R:12649795-12649915 0.00011 2_[+1]_110 chr3L:1404142-1404262 0.00011 44_[+1]_68 chr3R:8145098-8145218 0.00011 87_[+1]_25 chr2R:18603051-18603171 0.00016 42_[+1]_70 chr3L:2821643-2821763 0.00016 92_[+1]_20 chr2L:8421599-8421719 0.00016 56_[+1]_56 chr3R:12363692-12363812 0.00016 79_[+1]_33 chr3L:17924052-17924172 0.00016 108_[+1]_4 chr2R:13938195-13938315 0.00016 108_[+1]_4 chr3R:25626124-25626244 0.00016 62_[+1]_50 chr2L:7679715-7679835 0.00016 47_[+1]_65 chr3R:8138210-8138330 0.00016 62_[+1]_50 chr3R:8170870-8170990 0.00016 20_[+1]_92 chr2L:3583907-3584027 0.00019 22_[+1]_90 chr3R:26907212-26907332 0.00019 93_[+1]_19 chr3L:15210421-15210541 0.00019 54_[+1]_58 chr3R:8215667-8215787 0.00019 71_[+1]_41 chr2R:9407381-9407501 0.00023 31_[+1]_81 chr2L:11325064-11325184 0.00023 89_[+1]_23 chrX:6062313-6062433 0.00023 73_[+1]_39 chrX:5988923-5989043 0.00023 18_[+1]_94 chr2L:14266157-14266277 0.00027 29_[+1]_83 chr2R:21358438-21358558 0.00027 14_[+1]_98 chrX:15522525-15522645 0.00027 83_[+1]_29 chrX:6612626-6612746 0.00027 38_[+1]_74 chr2L:19359061-19359181 0.00027 46_[+1]_66 chr3R:18144996-18145116 0.00027 44_[+1]_68 chr2R:22829170-22829290 0.00038 43_[+1]_69 chr3R:19370509-19370629 0.00038 49_[+1]_63 chr2L:13789117-13789237 0.00038 56_[+1]_56 chr3R:15328598-15328718 0.00038 26_[+1]_86 chr2L:15408143-15408263 0.00038 40_[+1]_72 chr3L:20196452-20196572 0.00038 68_[+1]_44 chr3L:13253231-13253351 0.00038 91_[+1]_21 chr2L:14283062-14283182 0.00038 81_[+1]_31 chr2R:13500329-13500449 0.00038 40_[+1]_72 chr3R:23056891-23057011 0.00038 38_[+1]_74 chr2L:14268776-14268896 0.00038 21_[+1]_91 chr2R:11748799-11748919 0.00038 52_[+1]_60 chr2L:18145087-18145207 0.00038 52_[+1]_60 chr3L:15755218-15755338 0.00045 53_[+1]_59 chr2L:7877226-7877346 0.00045 47_[+1]_65 chr3R:23217270-23217390 0.00045 41_[+1]_71 chr3R:18075154-18075274 0.00045 91_[+1]_21 chr2R:14347905-14348025 0.00057 42_[+1]_70 chr3L:12695058-12695178 0.00057 64_[+1]_48 chr2R:14780214-14780334 0.00057 85_[+1]_27 chr2L:5247557-5247677 0.00057 37_[+1]_75 chrX:5956808-5956928 0.00057 58_[+1]_54 chr2L:18780404-18780524 0.00057 51_[+1]_61 chrX:4454805-4454925 0.00057 111_[+1]_1 chr2L:15107345-15107465 0.00057 80_[+1]_32 chr3L:10350025-10350145 0.00057 82_[+1]_30 chr3L:12666422-12666542 0.00057 27_[+1]_85 chr3L:3095189-3095309 0.00062 94_[+1]_18 chr2L:9123817-9123937 0.00062 23_[+1]_89 chr3L:13065764-13065884 0.00062 50_[+1]_62 chrX:10115975-10116095 0.00062 40_[+1]_72 chr3R:13261859-13261979 0.00062 105_[+1]_7 chrX:8260410-8260530 0.00062 34_[+1]_78 chrX:6011008-6011128 0.00062 92_[+1]_20 chr2L:14237993-14238113 0.0007 86_[+1]_26 chr3L:16892057-16892177 0.0007 38_[+1]_74 chr3R:16600890-16601010 0.0007 71_[+1]_41 chrX:7296100-7296220 0.0007 102_[+1]_10 chr3R:8198441-8198561 0.0007 67_[+1]_45 chr2R:19817879-19817999 0.00075 77_[+1]_35 chr2L:498529-498649 0.00085 2_[+1]_110 chr2R:21632941-21633061 0.00085 48_[+1]_64 chr2L:2453957-2454077 0.00085 55_[+1]_57 chr2R:6681723-6681843 0.00085 72_[+1]_40 chr2L:5988550-5988670 0.00085 30_[+1]_82 chr3L:20946165-20946285 0.00085 70_[+1]_42 chr2R:17504503-17504623 0.00085 101_[+1]_11 chr2L:15310489-15310609 0.00085 31_[+1]_81 chr3R:8214831-8214951 0.00085 9_[+1]_103 chr3R:8214527-8214647 0.00085 27_[+1]_85 chr3R:22397832-22397952 0.00085 82_[+1]_30 chrX:8450608-8450728 0.001 58_[+1]_54 chr2R:19125029-19125149 0.001 64_[+1]_48 chr3R:31564755-31564875 0.001 93_[+1]_19 chr3R:31712441-31712561 0.001 74_[+1]_38 chr3L:19049803-19049923 0.001 47_[+1]_65 chr2L:6268317-6268437 0.001 73_[+1]_39 chr3L:3875600-3875720 0.001 57_[+1]_55 chr3R:6294144-6294264 0.0012 32_[+1]_80 chr3R:9926393-9926513 0.0012 52_[+1]_60 chr2R:24740205-24740325 0.0012 99_[+1]_13 chr3R:12259968-12260088 0.0012 79_[+1]_33 chr3R:21419397-21419517 0.0012 70_[+1]_42 chr3L:14207495-14207615 0.0012 60_[+1]_52 chr2L:13880911-13881031 0.0012 44_[+1]_68 chr2R:11533306-11533426 0.0012 40_[+1]_72 chr3R:8210966-8211086 0.0012 56_[+1]_56 chr2R:12401188-12401308 0.0012 76_[+1]_36 chr3R:31605964-31606084 0.0012 50_[+1]_62 chr3L:8706448-8706568 0.0012 4_[+1]_108 chr2L:6500796-6500916 0.0012 69_[+1]_43 chr2R:23040276-23040396 0.0012 61_[+1]_51 chr3R:22165270-22165390 0.0012 79_[+1]_33 chr3R:18994203-18994323 0.0012 109_[+1]_3 chr2R:16178002-16178122 0.0012 68_[+1]_44 chr3L:11227847-11227967 0.0012 62_[+1]_50 chr3R:10553754-10553874 0.0014 61_[+1]_51 chr2L:8009940-8010060 0.0014 62_[+1]_50 chr2L:533845-533965 0.0014 105_[+1]_7 chr2R:15894916-15895036 0.0014 63_[+1]_49 chrX:600737-600857 0.0014 48_[+1]_64 chr2L:17395107-17395227 0.0014 47_[+1]_65 chr3R:24596357-24596477 0.0014 112_[+1] chrX:11875570-11875690 0.0014 87_[+1]_25 chr2R:16814803-16814923 0.0015 77_[+1]_35 chr3R:7142727-7142847 0.0015 41_[+1]_71 chr2L:7294069-7294189 0.0015 2_[+1]_110 chr2L:6464317-6464437 0.0015 24_[+1]_88 chrX:5717847-5717967 0.0015 82_[+1]_30 chr3R:23711311-23711431 0.0017 29_[+1]_83 chr2R:24587716-24587836 0.0017 81_[+1]_31 chr3R:30892808-30892928 0.0017 81_[+1]_31 chr2R:7430862-7430982 0.0017 47_[+1]_65 chr3R:29317686-29317806 0.0017 81_[+1]_31 chrX:6026091-6026211 0.0017 89_[+1]_23 chr3R:23668691-23668811 0.0017 83_[+1]_29 chrX:19316820-19316940 0.0017 73_[+1]_39 chr3R:29521019-29521139 0.0018 111_[+1]_1 chr3R:19312077-19312197 0.0018 56_[+1]_56 chr3L:11236613-11236733 0.002 58_[+1]_54 chr3R:15644507-15644627 0.002 35_[+1]_77 chr3R:14480289-14480409 0.002 81_[+1]_31 chr2L:6255424-6255544 0.002 56_[+1]_56 chr2L:495486-495606 0.002 26_[+1]_86 chrX:8496776-8496896 0.002 44_[+1]_68 chr3L:15662913-15663033 0.002 64_[+1]_48 chrX:4556082-4556202 0.002 46_[+1]_66 chr3L:4341240-4341360 0.0022 43_[+1]_69 chr3L:15227644-15227764 0.0022 62_[+1]_50 chr3L:17966702-17966822 0.0022 111_[+1]_1 chr3R:21414275-21414395 0.0022 52_[+1]_60 chrX:7295814-7295934 0.0022 5_[+1]_107 chrX:17506444-17506564 0.0024 51_[+1]_61 chr3R:13907497-13907617 0.0024 8_[+1]_104 chrX:7534662-7534782 0.0024 62_[+1]_50 chr2L:9944174-9944294 0.0024 66_[+1]_46 chr3R:19102608-19102728 0.0024 59_[+1]_53 chr3L:1675572-1675692 0.0027 39_[+1]_73 chr3L:21510554-21510674 0.0027 103_[+1]_9 chr2R:20045622-20045742 0.0027 44_[+1]_68 chr2R:15667478-15667598 0.0029 45_[+1]_67 chr2L:12365382-12365502 0.0029 17_[+1]_95 chr2R:23038138-23038258 0.0029 83_[+1]_29 chr3R:29984058-29984178 0.0031 41_[+1]_71 chr3L:12585142-12585262 0.0031 109_[+1]_3 chr2R:11494722-11494842 0.0031 49_[+1]_63 chr3R:8202733-8202853 0.0031 85_[+1]_27 chr2R:22677589-22677709 0.0031 36_[+1]_76 chr3R:8203754-8203874 0.0034 92_[+1]_20 chr3R:29868070-29868190 0.0034 82_[+1]_30 chr2R:8568697-8568817 0.0034 69_[+1]_43 chr2R:18239401-18239521 0.0034 9_[+1]_103 chrX:2464573-2464693 0.0034 57_[+1]_55 chr2L:13511009-13511129 0.0037 107_[+1]_5 chrX:18985602-18985722 0.0037 43_[+1]_69 chr2L:2837883-2838003 0.0037 84_[+1]_28 chrX:2195350-2195470 0.0037 55_[+1]_57 chr3L:21284760-21284880 0.004 36_[+1]_76 chrX:18285354-18285474 0.004 10_[+1]_102 chrX:4608706-4608826 0.0043 78_[+1]_34 chr2L:6694584-6694704 0.0045 61_[+1]_51 chr3L:21256492-21256612 0.0047 56_[+1]_56 chr2R:19370886-19371006 0.0048 79_[+1]_33 chr3L:8712806-8712926 0.0051 44_[+1]_68 chr3R:21241466-21241586 0.0051 6_[+1]_106 chr2R:7657060-7657180 0.0054 1_[+1]_111 chr3L:15303766-15303886 0.0054 20_[+1]_92 chr3R:8145935-8146055 0.0054 81_[+1]_31 chr3R:10606084-10606204 0.0054 79_[+1]_33 chr3R:16009145-16009265 0.0056 51_[+1]_61 chr3L:14423777-14423897 0.0059 74_[+1]_38 chr3L:1448257-1448377 0.0062 93_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMGATAAR width=8 seqs=211 chr3R:18079479-18079599 ( 81) CAGATAAG 1 chr3L:1203314-1203434 ( 79) CAGATAAG 1 chr3R:10757295-10757415 ( 40) CAGATAAG 1 chr2L:6707581-6707701 ( 28) CAGATAAG 1 chrX:4390011-4390131 ( 50) CAGATAAG 1 chrX:1385576-1385696 ( 80) CAGATAAG 1 chr2L:3777346-3777466 ( 86) CAGATAAG 1 chr2L:19429833-19429953 ( 20) CAGATAAG 1 chr2R:7373328-7373448 ( 76) CCGATAAG 1 chr3L:14668788-14668908 ( 39) CCGATAAG 1 chr3L:2457041-2457161 ( 68) CCGATAAG 1 chr2R:13551986-13552106 ( 60) CCGATAAG 1 chrX:11688290-11688410 ( 49) CCGATAAG 1 chr2R:19838231-19838351 ( 63) CCGATAAG 1 chr2R:10080893-10081013 ( 80) CCGATAAG 1 chr3R:26934012-26934132 ( 104) CCGATAAG 1 chr2L:4373001-4373121 ( 113) CCGATAAG 1 chr3R:30204425-30204545 ( 69) CCGATAAG 1 chr3R:26803243-26803363 ( 53) CCGATAAG 1 chrX:9044979-9045099 ( 56) CAGATCAG 1 chr3R:29523900-29524020 ( 80) CTGATAAG 1 chr3L:12652426-12652546 ( 67) GAGATAAG 1 chrX:9869483-9869603 ( 72) CTGATAAG 1 chr3R:13259779-13259899 ( 77) CTGATAAG 1 chr2L:371886-372006 ( 29) GAGATAAG 1 chr3R:8192657-8192777 ( 73) GAGATAAG 1 chr3R:6643694-6643814 ( 93) CTGATAAG 1 chr2L:3550703-3550823 ( 31) CTGATAAG 1 chr2R:23212486-23212606 ( 79) CAGATAAA 1 chr3R:14103104-14103224 ( 35) CTGATAAG 1 chrX:19240335-19240455 ( 65) GAGATAAG 1 chr3R:29523039-29523159 ( 72) CAGATAAA 1 chr2R:12649795-12649915 ( 3) CTGATAAG 1 chr3L:1404142-1404262 ( 45) GAGATAAG 1 chr3R:8145098-8145218 ( 88) CAGATAAA 1 chr2R:18603051-18603171 ( 43) TAGATAAG 1 chr3L:2821643-2821763 ( 93) TAGATAAG 1 chr2L:8421599-8421719 ( 57) TAGATAAG 1 chr3R:12363692-12363812 ( 80) TAGATAAG 1 chr3L:17924052-17924172 ( 109) CCGATCAG 1 chr2R:13938195-13938315 ( 109) CAGATAGG 1 chr3R:25626124-25626244 ( 63) TAGATAAG 1 chr2L:7679715-7679835 ( 48) TAGATAAG 1 chr3R:8138210-8138330 ( 63) TAGATAAG 1 chr3R:8170870-8170990 ( 21) TAGATAAG 1 chr2L:3583907-3584027 ( 23) GCGATAAG 1 chr3R:26907212-26907332 ( 94) CCGATAAA 1 chr3L:15210421-15210541 ( 55) CCGATAAA 1 chr3R:8215667-8215787 ( 72) GCGATAAG 1 chr2R:9407381-9407501 ( 32) CCGATAGG 1 chr2L:11325064-11325184 ( 90) CCGATAGG 1 chrX:6062313-6062433 ( 74) TCGATAAG 1 chrX:5988923-5989043 ( 19) TCGATAAG 1 chr2L:14266157-14266277 ( 30) CAGATCAA 1 chr2R:21358438-21358558 ( 15) CAGATCAA 1 chrX:15522525-15522645 ( 84) GAGATCAG 1 chrX:6612626-6612746 ( 39) CTGATCAG 1 chr2L:19359061-19359181 ( 47) CAGATCAA 1 chr3R:18144996-18145116 ( 45) CTGATCAG 1 chr2R:22829170-22829290 ( 44) CAGATAAT 1 chr3R:19370509-19370629 ( 50) GAGATAAA 1 chr2L:13789117-13789237 ( 57) CTGATAAA 1 chr3R:15328598-15328718 ( 27) GAGATAAA 1 chr2L:15408143-15408263 ( 41) GTGATAAG 1 chr3L:20196452-20196572 ( 69) CAGATATG 1 chr3L:13253231-13253351 ( 92) CTGATAAA 1 chr2L:14283062-14283182 ( 82) CTGATAAA 1 chr2R:13500329-13500449 ( 41) CAGATATG 1 chr3R:23056891-23057011 ( 39) CAGATAAT 1 chr2L:14268776-14268896 ( 22) CTGATAAA 1 chr2R:11748799-11748919 ( 53) GAGATAAA 1 chr2L:18145087-18145207 ( 53) CAGATAAT 1 chr3L:15755218-15755338 ( 54) CAGATACG 1 chr2L:7877226-7877346 ( 48) CAGATACG 1 chr3R:23217270-23217390 ( 42) CAGATAAC 1 chr3R:18075154-18075274 ( 92) CAGATCGG 1 chr2R:14347905-14348025 ( 43) GAGATAGG 1 chr3L:12695058-12695178 ( 65) TTGATAAG 1 chr2R:14780214-14780334 ( 86) CAGATAGA 1 chr2L:5247557-5247677 ( 38) CAGATAGA 1 chrX:5956808-5956928 ( 59) CTGATAGG 1 chr2L:18780404-18780524 ( 52) TAGATAAA 1 chrX:4454805-4454925 ( 112) GCGATCAG 1 chr2L:15107345-15107465 ( 81) GAGATAGG 1 chr3L:10350025-10350145 ( 83) GAGATAGG 1 chr3L:12666422-12666542 ( 28) TAGATAAA 1 chr3L:3095189-3095309 ( 95) CCGATAAT 1 chr2L:9123817-9123937 ( 24) CCGATAAT 1 chr3L:13065764-13065884 ( 51) GCGATAAA 1 chrX:10115975-10116095 ( 41) CCGATAAT 1 chr3R:13261859-13261979 ( 106) CCGATATG 1 chrX:8260410-8260530 ( 35) CCGATATG 1 chrX:6011008-6011128 ( 93) CCGATAAT 1 chr2L:14237993-14238113 ( 87) TCGATCAG 1 chr3L:16892057-16892177 ( 39) CCGATCGG 1 chr3R:16600890-16601010 ( 72) TAGATAGG 1 chrX:7296100-7296220 ( 103) TAGATAGG 1 chr3R:8198441-8198561 ( 68) TCGATCAG 1 chr2R:19817879-19817999 ( 78) GCGATAGG 1 chr2L:498529-498649 ( 3) CTGATCAA 1 chr2R:21632941-21633061 ( 49) CAGATCAT 1 chr2L:2453957-2454077 ( 56) AAGATAAG 1 chr2R:6681723-6681843 ( 73) AAGATAAG 1 chr2L:5988550-5988670 ( 31) CAGATCAT 1 chr3L:20946165-20946285 ( 71) AAGATAAG 1 chr2R:17504503-17504623 ( 102) CTGATCAA 1 chr2L:15310489-15310609 ( 32) GAGATCAA 1 chr3R:8214831-8214951 ( 10) CAGATCAT 1 chr3R:8214527-8214647 ( 28) AAGATAAG 1 chr3R:22397832-22397952 ( 83) AAGATAAG 1 chrX:8450608-8450728 ( 59) CTGATAAT 1 chr2R:19125029-19125149 ( 65) GAGATATG 1 chr3R:31564755-31564875 ( 94) GAGATAAT 1 chr3R:31712441-31712561 ( 75) CAGATATA 1 chr3L:19049803-19049923 ( 48) CTGATAAT 1 chr2L:6268317-6268437 ( 74) CTGATATG 1 chr3L:3875600-3875720 ( 58) GAGATATG 1 chr3R:6294144-6294264 ( 33) CAGATCGA 1 chr3R:9926393-9926513 ( 53) CAGATACA 1 chr2R:24740205-24740325 ( 100) GAGATACG 1 chr3R:12259968-12260088 ( 80) GAGATACG 1 chr3R:21419397-21419517 ( 71) CTGATCGG 1 chr3L:14207495-14207615 ( 61) CTGATAAC 1 chr2L:13880911-13881031 ( 45) GAGATCGG 1 chr2R:11533306-11533426 ( 41) CAGATACA 1 chr3R:8210966-8211086 ( 57) GAGATCGG 1 chr2R:12401188-12401308 ( 77) GAGATCGG 1 chr3R:31605964-31606084 ( 51) GAGATCGG 1 chr3L:8706448-8706568 ( 5) CAGATACA 1 chr2L:6500796-6500916 ( 70) CTGATAAC 1 chr2R:23040276-23040396 ( 62) CAGATCGA 1 chr3R:22165270-22165390 ( 80) CTGATACG 1 chr3R:18994203-18994323 ( 110) CAGATACA 1 chr2R:16178002-16178122 ( 69) CTGATAAC 1 chr3L:11227847-11227967 ( 63) CAGATACA 1 chr3R:10553754-10553874 ( 62) TTGATAAA 1 chr2L:8009940-8010060 ( 63) ACGATAAG 1 chr2L:533845-533965 ( 106) TTGATAAA 1 chr2R:15894916-15895036 ( 64) TAGATAAT 1 chrX:600737-600857 ( 49) TTGATAAA 1 chr2L:17395107-17395227 ( 48) CAGATAGT 1 chr3R:24596357-24596477 ( 113) GAGATAGA 1 chrX:11875570-11875690 ( 88) CAGATAGT 1 chr2R:16814803-16814923 ( 78) TAGATAAC 1 chr3R:7142727-7142847 ( 42) CCGATCCG 1 chr2L:7294069-7294189 ( 3) CCGATCCG 1 chr2L:6464317-6464437 ( 25) TAGATAAC 1 chrX:5717847-5717967 ( 83) GCGATAAT 1 chr3R:23711311-23711431 ( 30) TCGATCAA 1 chr2R:24587716-24587836 ( 82) TAGATAGA 1 chr3R:30892808-30892928 ( 82) TCGATCAA 1 chr2R:7430862-7430982 ( 48) GCGATAAC 1 chr3R:29317686-29317806 ( 82) GCGATAAC 1 chrX:6026091-6026211 ( 90) TAGATAGA 1 chr3R:23668691-23668811 ( 84) TAGATAGA 1 chrX:19316820-19316940 ( 74) TAGATAGA 1 chr3R:29521019-29521139 ( 112) GCGATAGA 1 chr3R:19312077-19312197 ( 57) GCGATAGA 1 chr3L:11236613-11236733 ( 59) GAGATCTG 1 chr3R:15644507-15644627 ( 36) CTGATCAT 1 chr3R:14480289-14480409 ( 82) AAGATAAA 1 chr2L:6255424-6255544 ( 57) ATGATAAG 1 chr2L:495486-495606 ( 27) CTGATCTG 1 chrX:8496776-8496896 ( 45) TCGATCGG 1 chr3L:15662913-15663033 ( 65) TCGATAAC 1 chrX:4556082-4556202 ( 47) TCGATCGG 1 chr3L:4341240-4341360 ( 44) CTGATCCG 1 chr3L:15227644-15227764 ( 63) GAGATATA 1 chr3L:17966702-17966822 ( 112) GAGATATA 1 chr3R:21414275-21414395 ( 53) GAGATCAC 1 chrX:7295814-7295934 ( 6) GAGATCCG 1 chrX:17506444-17506564 ( 52) CAGATCGT 1 chr3R:13907497-13907617 ( 9) CAGATCGT 1 chrX:7534662-7534782 ( 63) GAGATACA 1 chr2L:9944174-9944294 ( 67) TAGATCAT 1 chr3R:19102608-19102728 ( 60) ACGATCAG 1 chr3L:1675572-1675692 ( 40) CAGATCGC 1 chr3L:21510554-21510674 ( 104) TTGATAAT 1 chr2R:20045622-20045742 ( 45) TTGATATG 1 chr2R:15667478-15667598 ( 46) TTGATAAC 1 chr2L:12365382-12365502 ( 18) TAGATACA 1 chr2R:23038138-23038258 ( 84) CCGATCCA 1 chr3R:29984058-29984178 ( 42) TCGATCTG 1 chr3L:12585142-12585262 ( 110) TCGATCAT 1 chr2R:11494722-11494842 ( 50) CCGATATC 1 chr3R:8202733-8202853 ( 86) TCGATCAT 1 chr2R:22677589-22677709 ( 37) GCGATCGA 1 chr3R:8203754-8203874 ( 93) TCGATCGA 1 chr3R:29868070-29868190 ( 83) GAGATCTA 1 chr2R:8568697-8568817 ( 70) CTGATCTA 1 chr2R:18239401-18239521 ( 10) CTGATCTA 1 chrX:2464573-2464693 ( 58) CTGATCTA 1 chr2L:13511009-13511129 ( 108) AAGATAAC 1 chrX:18985602-18985722 ( 44) GAGATTAG 1 chr2L:2837883-2838003 ( 85) GAGATTAG 1 chrX:2195350-2195470 ( 56) CTGATATT 1 chr3L:21284760-21284880 ( 37) CTGATATC 1 chrX:18285354-18285474 ( 11) AAGATAGA 1 chrX:4608706-4608826 ( 79) TTGATATA 1 chr2L:6694584-6694704 ( 62) CCGATCTC 1 chr3L:21256492-21256612 ( 57) TCGATCTA 1 chr2R:19370886-19371006 ( 80) TTGATAGC 1 chr3L:8712806-8712926 ( 45) ATGATAAT 1 chr3R:21241466-21241586 ( 7) AAGATATA 1 chr2R:7657060-7657180 ( 2) CTGATTAA 1 chr3L:15303766-15303886 ( 21) CAGATTTG 1 chr3R:8145935-8146055 ( 82) CTGATTAA 1 chr3R:10606084-10606204 ( 80) AAGATACA 1 chr3R:16009145-16009265 ( 52) CTGATCCC 1 chr3L:14423777-14423897 ( 75) GCGATCTT 1 chr3L:1448257-1448377 ( 94) CCGATTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.60264 E= 1.1e-019 -208 120 -7 -38 86 27 -1437 -29 -1437 -1437 215 -1437 184 -1437 -1437 -1437 -1437 -1437 -1437 188 133 27 -1437 -326 108 -124 -28 -109 7 -139 113 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 211 E= 1.1e-019 0.066351 0.511848 0.213270 0.208531 0.507109 0.270142 0.000000 0.222749 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.701422 0.270142 0.000000 0.028436 0.592417 0.094787 0.184834 0.127962 0.293839 0.085308 0.492891 0.127962 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGATAAR MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][ACT]GAT[AC]A[GA] -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF YCKTATCD MEME-2 width = 8 sites = 77 llr = 583 E-value = 2.6e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a::3 pos.-specific C 37::::a: probability G 2:4::::3 matrix T 536a:a:4 bits 2.2 * 1.9 * ** 1.7 **** 1.5 **** Relative 1.3 * **** Entropy 1.1 ****** (10.9 bits) 0.9 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCT consensus CTG G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6349183-6349303 40 2.09e-05 GTCAATGTGA TCTTATCT TAATATTTTC chrX:5744356-5744476 6 2.09e-05 ttatc tcttatct tttatcgttg chrX:4502695-4502815 56 2.09e-05 TTGGGAGCGA TCTTATCT CGGTTCGTTG chrX:7295814-7295934 26 2.09e-05 CCCATCCGAT TCTTATCT ACAATCTCTG chr2L:17395107-17395227 16 3.81e-05 CATTTCATTG CCTTATCT ACTTGTGTAT chr3L:6385120-6385240 87 3.81e-05 TCTCCATTGG CCTTATCT GTATTTGGTA chr2L:19951939-19952059 49 5.54e-05 AGGCCAACTA TCTTATCG GGTCGCAACT chr2R:15667478-15667598 31 5.54e-05 TGCAGGGTAA TCTTATCG TAATCAGTTG chrX:6062313-6062433 60 5.54e-05 GGCGATGGCA TCTTATCG GGCAAATCGA chrX:18985602-18985722 61 5.54e-05 GGATCGGAGA TCTTATCG CGTCTCAAAC chr3R:31564755-31564875 24 5.54e-05 ATCGAAGCGA TCTTATCG GCATTTTGCC chr2L:9944174-9944294 49 5.54e-05 GCTGCCCCAA TCTTATCG AGCCATATCT chr3R:6344020-6344140 68 5.54e-05 TTTCTCAAGA TCTTATCG TCTACCGAAT chr2L:7679715-7679835 35 5.54e-05 TGGACTTTAA TCTTATCG CGAAGTAGAT chr3R:8207404-8207524 70 5.54e-05 AATCACAGTT TCTTATCG CGATGTTGAT chr3L:10997412-10997532 3 6.97e-05 CG CCTTATCG CACCCCCACA chr3L:6883559-6883679 92 6.97e-05 GTCTTTTAGT CCTTATCG GTCGCAATCA chr2L:5988550-5988670 76 6.97e-05 CAATCTTAAT CCTTATCG CCGCCACCCT chrX:6026091-6026211 4 6.97e-05 CCG CCTTATCG CGATGGCGAA chr3R:13261859-13261979 12 6.97e-05 GAGGCACTTT CCTTATCG CGCCGTCAAG chr3L:1448257-1448377 69 6.97e-05 TATTAAAGAC CCTTATCG GTGTTTGAGC chr2R:12649795-12649915 102 6.97e-05 CACTACGATT CCTTATCG ATGTGGAATT chr2R:22677589-22677709 60 6.97e-05 AAGTTTGCTT CCTTATCG GGGAACACCG chr2L:8421599-8421719 69 8.70e-05 GATAAGCCGG TCGTATCT GTATCTGCTG chr2R:24587716-24587836 40 8.70e-05 TAATAAGCGG TCGTATCT TCGAGTCTGT chr3L:12585142-12585262 54 8.70e-05 TATCAGCGGT TCGTATCT CTATAAGGTG chr2R:11494722-11494842 27 8.70e-05 GAGACATCTT TCGTATCT CACACACATA chrX:6011008-6011128 69 8.70e-05 CGACGCTGGC TCGTATCT CATATCATAT chr3R:10656558-10656678 98 1.23e-04 CTCAAATCAA TCTTATCA GGCGAACGTG chr2R:7430862-7430982 104 1.23e-04 CCTGATCTGC CCGTATCT CTCCAAATA chrX:8496776-8496896 9 1.23e-04 ACACATAT CCGTATCT ATAGGCGGGG chr2L:2837883-2838003 48 1.23e-04 TGATTCGTTT TCTTATCA AGAGGCATCA chrX:7222596-7222716 84 1.23e-04 CTTTGtgtat ccgtatct gtatctgtaa chr2L:8009940-8010060 36 1.55e-04 CCATAAAACC CCTTATCA TAGTTATAGA chr3L:5618573-5618693 65 1.55e-04 GATCTTACCG CCTTATCA TTTAGCCGAA chr2R:12538684-12538804 24 1.55e-04 TTATTGATTG CCTTATCA TCAACTTGGA chr3R:8215667-8215787 37 1.55e-04 CATTTGGCGG CCTTATCA GCGACAGTGA chr3L:15303766-15303886 37 1.84e-04 TGTTTAATCG GCTTATCT GGTATCAGCA chrX:11688290-11688410 2 1.84e-04 T Ccgtatcg catcgcatcg chr3R:8145935-8146055 68 1.84e-04 CCACTGCCAC GCTTATCT GCGATGCTGA chr3R:8203754-8203874 36 2.16e-04 TCGCTCCAGG TCGTATCA GATTTCGCTG chrX:7534662-7534782 96 2.16e-04 AGTGCAGCGT TCGTATCA CCCCAATCCC chr2L:533845-533965 8 2.16e-04 TTGTGTC GCTTATCG GCGAGGATCG chrX:4454805-4454925 40 2.16e-04 GGCGACCATA TCGTATCA TGCGGTGCCC chr3L:21284760-21284880 106 2.16e-04 AGTATTATAC TCGTATCA TGATTAG chr2R:21632941-21633061 3 2.56e-04 AC TTTTATCT CTTCATTTTC chrX:17506444-17506564 93 2.56e-04 CCCCATGCAC TTTTATCT CCATCTCGTT chr3L:6779567-6779687 61 2.56e-04 TTTTTAAGAT TTTTATCT AACAAACTCG chr3L:21256492-21256612 110 2.56e-04 GACTCTCCGT TTTTATCT AAT chr3R:6294144-6294264 23 2.91e-04 CATGCCTGTC GCGTATCT AACAGATCGA chr3L:20196452-20196572 100 2.91e-04 GTGTACAGCT CTTTATCT GACAGACATA chr3L:15755218-15755338 44 2.91e-04 TACCAGCGAT GCGTATCT GTCAGATACG chr2R:13938195-13938315 39 3.30e-04 TTGTGTTCCC GCTTATCA CAGATGCCAC chr3R:23668691-23668811 24 3.30e-04 GCTTATCAGT GCTTATCA ACACGACCGC chrX:2464573-2464693 44 3.30e-04 TCCACATCTG GCTTATCA TGAACGCTGA chrX:5717847-5717967 68 3.30e-04 TTTAATCAGC GCTTATCA TCGGTCGGCG chr2L:6696368-6696488 74 3.30e-04 GATCTACGAT GCTTATCA GATGCACAGA chr3R:21414275-21414395 91 3.59e-04 CTACCAAGAT GCGTATCG CATCGCTCGG chr3R:14032925-14033045 100 3.59e-04 GTGGTACGAT CTTTATCG AATTAGCTTT chrX:2195350-2195470 13 3.59e-04 TCCCCACCTC CTTTATCG CTCGCCAGGT chr2R:15894916-15895036 77 3.80e-04 ATAATCGAGA TTGTATCT CTTGATGTGG chr3L:19049803-19049923 19 3.80e-04 AACCCCGAGA TTGTATCT GCATTATCTA chr3R:14103104-14103224 66 3.80e-04 TCATTCAGAT TTGTATCT GTATCTGAAA chr3R:18994203-18994323 92 3.80e-04 TGTGCTGCCA TTGTATCT CAGAGATACC chr3R:29984058-29984178 20 4.24e-04 gaacctgtat ctgtatct cttacagatg chr2R:7657060-7657180 39 4.24e-04 GTACTATCAA TTTTATCA GTTGTCGTCC chr2L:495486-495606 18 4.24e-04 GTCGGTTGTT TTTTATCA GCTGATCTGA chr3L:2457041-2457161 49 4.24e-04 CGAAGTTATG CTGTATCT TTACTAATCT chr2R:23208420-23208540 43 4.24e-04 CATAGAGTAT CTGTATCT CAGTATCTTT chr3R:10606084-10606204 44 4.24e-04 TGTGTGAGAT TTTTATCA TTTGTACTCA chr3R:29521019-29521139 53 4.24e-04 gtatccgcat ctgtatct gtatctCCGT chr2R:19125029-19125149 15 4.77e-04 TGATAATTGT GCGTATCA CATTTTTCAA chr2L:14266157-14266277 113 4.77e-04 AACACGCACA CTTTATCA chr2R:12401188-12401308 110 5.13e-04 TATAATTATC GTTTATCT GGG chr3L:15210421-15210541 14 5.13e-04 CCACACGCTT GTTTATCT GGCCAATGAT chr3L:11227847-11227967 35 5.52e-04 cagcagcagA TTGTATCA CTAGAATCCA chr3R:23711311-23711431 76 5.87e-04 CTATGCACTC GTGTATCT ATATCTAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6349183-6349303 2.1e-05 39_[+2]_73 chrX:5744356-5744476 2.1e-05 5_[+2]_107 chrX:4502695-4502815 2.1e-05 55_[+2]_57 chrX:7295814-7295934 2.1e-05 25_[+2]_87 chr2L:17395107-17395227 3.8e-05 15_[+2]_97 chr3L:6385120-6385240 3.8e-05 86_[+2]_26 chr2L:19951939-19952059 5.5e-05 48_[+2]_64 chr2R:15667478-15667598 5.5e-05 30_[+2]_82 chrX:6062313-6062433 5.5e-05 59_[+2]_53 chrX:18985602-18985722 5.5e-05 60_[+2]_52 chr3R:31564755-31564875 5.5e-05 23_[+2]_89 chr2L:9944174-9944294 5.5e-05 48_[+2]_64 chr3R:6344020-6344140 5.5e-05 67_[+2]_45 chr2L:7679715-7679835 5.5e-05 34_[+2]_78 chr3R:8207404-8207524 5.5e-05 69_[+2]_43 chr3L:10997412-10997532 7e-05 2_[+2]_110 chr3L:6883559-6883679 7e-05 91_[+2]_21 chr2L:5988550-5988670 7e-05 75_[+2]_37 chrX:6026091-6026211 7e-05 3_[+2]_109 chr3R:13261859-13261979 7e-05 11_[+2]_101 chr3L:1448257-1448377 7e-05 68_[+2]_44 chr2R:12649795-12649915 7e-05 101_[+2]_11 chr2R:22677589-22677709 7e-05 59_[+2]_53 chr2L:8421599-8421719 8.7e-05 68_[+2]_44 chr2R:24587716-24587836 8.7e-05 39_[+2]_73 chr3L:12585142-12585262 8.7e-05 53_[+2]_59 chr2R:11494722-11494842 8.7e-05 26_[+2]_86 chrX:6011008-6011128 8.7e-05 68_[+2]_44 chr3R:10656558-10656678 0.00012 97_[+2]_15 chr2R:7430862-7430982 0.00012 103_[+2]_9 chrX:8496776-8496896 0.00012 8_[+2]_104 chr2L:2837883-2838003 0.00012 47_[+2]_65 chrX:7222596-7222716 0.00012 83_[+2]_29 chr2L:8009940-8010060 0.00015 35_[+2]_77 chr3L:5618573-5618693 0.00015 64_[+2]_48 chr2R:12538684-12538804 0.00015 23_[+2]_89 chr3R:8215667-8215787 0.00015 36_[+2]_76 chr3L:15303766-15303886 0.00018 36_[+2]_76 chrX:11688290-11688410 0.00018 1_[+2]_111 chr3R:8145935-8146055 0.00018 67_[+2]_45 chr3R:8203754-8203874 0.00022 35_[+2]_77 chrX:7534662-7534782 0.00022 95_[+2]_17 chr2L:533845-533965 0.00022 7_[+2]_105 chrX:4454805-4454925 0.00022 39_[+2]_73 chr3L:21284760-21284880 0.00022 105_[+2]_7 chr2R:21632941-21633061 0.00026 2_[+2]_110 chrX:17506444-17506564 0.00026 92_[+2]_20 chr3L:6779567-6779687 0.00026 60_[+2]_52 chr3L:21256492-21256612 0.00026 109_[+2]_3 chr3R:6294144-6294264 0.00029 22_[+2]_90 chr3L:20196452-20196572 0.00029 99_[+2]_13 chr3L:15755218-15755338 0.00029 43_[+2]_69 chr2R:13938195-13938315 0.00033 38_[+2]_74 chr3R:23668691-23668811 0.00033 23_[+2]_89 chrX:2464573-2464693 0.00033 43_[+2]_69 chrX:5717847-5717967 0.00033 67_[+2]_45 chr2L:6696368-6696488 0.00033 73_[+2]_39 chr3R:21414275-21414395 0.00036 90_[+2]_22 chr3R:14032925-14033045 0.00036 99_[+2]_13 chrX:2195350-2195470 0.00036 12_[+2]_100 chr2R:15894916-15895036 0.00038 76_[+2]_36 chr3L:19049803-19049923 0.00038 18_[+2]_94 chr3R:14103104-14103224 0.00038 65_[+2]_47 chr3R:18994203-18994323 0.00038 91_[+2]_21 chr3R:29984058-29984178 0.00042 19_[+2]_93 chr2R:7657060-7657180 0.00042 38_[+2]_74 chr2L:495486-495606 0.00042 17_[+2]_95 chr3L:2457041-2457161 0.00042 48_[+2]_64 chr2R:23208420-23208540 0.00042 42_[+2]_70 chr3R:10606084-10606204 0.00042 43_[+2]_69 chr3R:29521019-29521139 0.00042 52_[+2]_60 chr2R:19125029-19125149 0.00048 14_[+2]_98 chr2L:14266157-14266277 0.00048 112_[+2] chr2R:12401188-12401308 0.00051 109_[+2]_3 chr3L:15210421-15210541 0.00051 13_[+2]_99 chr3L:11227847-11227967 0.00055 34_[+2]_78 chr3R:23711311-23711431 0.00059 75_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCKTATCD width=8 seqs=77 chr2L:6349183-6349303 ( 40) TCTTATCT 1 chrX:5744356-5744476 ( 6) TCTTATCT 1 chrX:4502695-4502815 ( 56) TCTTATCT 1 chrX:7295814-7295934 ( 26) TCTTATCT 1 chr2L:17395107-17395227 ( 16) CCTTATCT 1 chr3L:6385120-6385240 ( 87) CCTTATCT 1 chr2L:19951939-19952059 ( 49) TCTTATCG 1 chr2R:15667478-15667598 ( 31) TCTTATCG 1 chrX:6062313-6062433 ( 60) TCTTATCG 1 chrX:18985602-18985722 ( 61) TCTTATCG 1 chr3R:31564755-31564875 ( 24) TCTTATCG 1 chr2L:9944174-9944294 ( 49) TCTTATCG 1 chr3R:6344020-6344140 ( 68) TCTTATCG 1 chr2L:7679715-7679835 ( 35) TCTTATCG 1 chr3R:8207404-8207524 ( 70) TCTTATCG 1 chr3L:10997412-10997532 ( 3) CCTTATCG 1 chr3L:6883559-6883679 ( 92) CCTTATCG 1 chr2L:5988550-5988670 ( 76) CCTTATCG 1 chrX:6026091-6026211 ( 4) CCTTATCG 1 chr3R:13261859-13261979 ( 12) CCTTATCG 1 chr3L:1448257-1448377 ( 69) CCTTATCG 1 chr2R:12649795-12649915 ( 102) CCTTATCG 1 chr2R:22677589-22677709 ( 60) CCTTATCG 1 chr2L:8421599-8421719 ( 69) TCGTATCT 1 chr2R:24587716-24587836 ( 40) TCGTATCT 1 chr3L:12585142-12585262 ( 54) TCGTATCT 1 chr2R:11494722-11494842 ( 27) TCGTATCT 1 chrX:6011008-6011128 ( 69) TCGTATCT 1 chr3R:10656558-10656678 ( 98) TCTTATCA 1 chr2R:7430862-7430982 ( 104) CCGTATCT 1 chrX:8496776-8496896 ( 9) CCGTATCT 1 chr2L:2837883-2838003 ( 48) TCTTATCA 1 chrX:7222596-7222716 ( 84) CCGTATCT 1 chr2L:8009940-8010060 ( 36) CCTTATCA 1 chr3L:5618573-5618693 ( 65) CCTTATCA 1 chr2R:12538684-12538804 ( 24) CCTTATCA 1 chr3R:8215667-8215787 ( 37) CCTTATCA 1 chr3L:15303766-15303886 ( 37) GCTTATCT 1 chrX:11688290-11688410 ( 2) CCGTATCG 1 chr3R:8145935-8146055 ( 68) GCTTATCT 1 chr3R:8203754-8203874 ( 36) TCGTATCA 1 chrX:7534662-7534782 ( 96) TCGTATCA 1 chr2L:533845-533965 ( 8) GCTTATCG 1 chrX:4454805-4454925 ( 40) TCGTATCA 1 chr3L:21284760-21284880 ( 106) TCGTATCA 1 chr2R:21632941-21633061 ( 3) TTTTATCT 1 chrX:17506444-17506564 ( 93) TTTTATCT 1 chr3L:6779567-6779687 ( 61) TTTTATCT 1 chr3L:21256492-21256612 ( 110) TTTTATCT 1 chr3R:6294144-6294264 ( 23) GCGTATCT 1 chr3L:20196452-20196572 ( 100) CTTTATCT 1 chr3L:15755218-15755338 ( 44) GCGTATCT 1 chr2R:13938195-13938315 ( 39) GCTTATCA 1 chr3R:23668691-23668811 ( 24) GCTTATCA 1 chrX:2464573-2464693 ( 44) GCTTATCA 1 chrX:5717847-5717967 ( 68) GCTTATCA 1 chr2L:6696368-6696488 ( 74) GCTTATCA 1 chr3R:21414275-21414395 ( 91) GCGTATCG 1 chr3R:14032925-14033045 ( 100) CTTTATCG 1 chrX:2195350-2195470 ( 13) CTTTATCG 1 chr2R:15894916-15895036 ( 77) TTGTATCT 1 chr3L:19049803-19049923 ( 19) TTGTATCT 1 chr3R:14103104-14103224 ( 66) TTGTATCT 1 chr3R:18994203-18994323 ( 92) TTGTATCT 1 chr3R:29984058-29984178 ( 20) CTGTATCT 1 chr2R:7657060-7657180 ( 39) TTTTATCA 1 chr2L:495486-495606 ( 18) TTTTATCA 1 chr3L:2457041-2457161 ( 49) CTGTATCT 1 chr2R:23208420-23208540 ( 43) CTGTATCT 1 chr3R:10606084-10606204 ( 44) TTTTATCA 1 chr3R:29521019-29521139 ( 53) CTGTATCT 1 chr2R:19125029-19125149 ( 15) GCGTATCA 1 chr2L:14266157-14266277 ( 113) CTTTATCA 1 chr2R:12401188-12401308 ( 110) GTTTATCT 1 chr3L:15210421-15210541 ( 14) GTTTATCT 1 chr3L:11227847-11227967 ( 35) TTGTATCA 1 chr3R:23711311-23711431 ( 76) GTGTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 2.6e-009 -1291 60 -21 78 -1291 165 -1291 13 -1291 -1291 64 126 -1291 -1291 -1291 188 184 -1291 -1291 -1291 -1291 -1291 -1291 188 -1291 216 -1291 -1291 -4 -1291 35 70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 2.6e-009 0.000000 0.337662 0.194805 0.467532 0.000000 0.701299 0.000000 0.298701 0.000000 0.000000 0.350649 0.649351 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.000000 0.285714 0.441558 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCKTATCD MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CT][TG]TATC[TGA] -------------------------------------------------------------------------------- Time 13.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGATCGC MEME-3 width = 8 sites = 35 llr = 292 E-value = 5.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::3 pos.-specific C 1a1::a:7 probability G 6:7:::7: matrix T 3:2:a:3: bits 2.2 * * 1.9 * ** 1.7 * *** 1.5 * *** Relative 1.3 * ***** Entropy 1.1 * ***** (12.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGATCGC consensus T T TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3095189-3095309 42 9.75e-06 gatcttaatc gcgatcgc aatggcaatT chr2L:9944174-9944294 75 9.75e-06 CTTAGATCAT GCGATCGC AATGGTTAGT chr2R:23212486-23212606 68 9.75e-06 TGATGGCCCG GCGATCGC GCacagataa chr2L:533845-533965 23 2.15e-05 TCGGCGAGGA TCGATCGC AGCTCCAGCa chr2L:7294069-7294189 112 2.15e-05 TTGTGGATTG TCGATCGC T chr2R:7657060-7657180 70 3.33e-05 AATCGCTGCG GCGATCTC TTAAAAACCC chr2R:19817879-19817999 37 3.33e-05 TCGCAGTCAA GCGATCTC ATTTGCCGAT chr3L:15227644-15227764 46 4.55e-05 GATGATGACG GCGATCGA ATGGCGATCG chr3R:21419397-21419517 41 4.55e-05 cggatgcgat gcgatcga atccgatcga chrX:4390011-4390131 70 4.55e-05 CCAGCCACAG GCGATCGA CAAGTTTGAT chr2R:10080893-10081013 61 4.55e-05 TGCAGGCGCT GCGATCGA TCTACTGATC chr2R:11748799-11748919 95 4.55e-05 TGCGCGCGCC GCGATCGA CGGATCGCTC chr3R:30892808-30892928 103 5.73e-05 tccacctcga gctATCGC TAATTGTCCA chr2R:19810482-19810602 27 5.73e-05 TAATTTGATG GCTATCGC TGGGGAGGAA chr3L:11393156-11393276 12 5.73e-05 GGGACACGTT GCTATCGC CAAAAATCTA chr3R:8145098-8145218 5 5.73e-05 CCTG GCTATCGC AGCTAATCAT chrX:5717847-5717967 42 6.70e-05 GGCTTCGATT GCCATCGC TGTTTGCCTT chr2L:3777346-3777466 35 6.70e-05 GCATGGCGGG GCCATCGC TCATCTACAG chr2L:19429833-19429953 105 6.70e-05 TCAACAGATT GCCATCGC TGAAGCTC chr2R:7430862-7430982 35 7.67e-05 GATTTGTGTA CCGATCGC GCAATGCGAT chrX:19316820-19316940 113 7.67e-05 ATTGATTAGG CCGATCGC chr3R:29523900-29524020 70 9.10e-05 ACGAAATATT TCGATCTC GGCTGATAAG chr3R:9432986-9433106 48 9.10e-05 aatctcaatc tcgatctc aatctcagtt chr2L:495687-495807 81 9.10e-05 ATCGGAATGA TCGATCTC CACCGTTGAG chr3L:15210421-15210541 109 9.10e-05 catctccatc tcgatctc catc chrX:5988923-5989043 96 1.06e-04 gatcgatcaa tcgatcga tcCCATCGTA chr2L:14283062-14283182 27 1.06e-04 GTGATCTTCA TCGATCGA GGTCCGTTGT chrX:6011008-6011128 21 1.06e-04 ACTCCCCCCA TCGATCGA ACATCAGATT chr3R:10757295-10757415 81 1.61e-04 AACTAGATCT GCTATCTC CAAGCATTAT chr3R:25626124-25626244 3 1.61e-04 CG GCTATCTC CTGCGAGTGC chrX:18285354-18285474 46 1.61e-04 ATTCccattc tccatcgc catctccatc chr3R:15644507-15644627 22 1.87e-04 GCAGAGTCCA GCCATCTC ACTTATCTGA chrX:2655593-2655713 28 1.87e-04 CGCCACCATT GCTATCGA AGTCATATGC chr2L:13789117-13789237 6 2.11e-04 GTACT CCGATCTC AGAAATTGAT chr2L:18145087-18145207 77 2.23e-04 CATTTTTCCC CCGATCGA AAGACTCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3095189-3095309 9.8e-06 41_[+3]_71 chr2L:9944174-9944294 9.8e-06 74_[+3]_38 chr2R:23212486-23212606 9.8e-06 67_[+3]_45 chr2L:533845-533965 2.2e-05 22_[+3]_90 chr2L:7294069-7294189 2.2e-05 111_[+3]_1 chr2R:7657060-7657180 3.3e-05 69_[+3]_43 chr2R:19817879-19817999 3.3e-05 36_[+3]_76 chr3L:15227644-15227764 4.6e-05 45_[+3]_67 chr3R:21419397-21419517 4.6e-05 40_[+3]_72 chrX:4390011-4390131 4.6e-05 69_[+3]_43 chr2R:10080893-10081013 4.6e-05 60_[+3]_52 chr2R:11748799-11748919 4.6e-05 94_[+3]_18 chr3R:30892808-30892928 5.7e-05 102_[+3]_10 chr2R:19810482-19810602 5.7e-05 26_[+3]_86 chr3L:11393156-11393276 5.7e-05 11_[+3]_101 chr3R:8145098-8145218 5.7e-05 4_[+3]_108 chrX:5717847-5717967 6.7e-05 41_[+3]_71 chr2L:3777346-3777466 6.7e-05 34_[+3]_78 chr2L:19429833-19429953 6.7e-05 104_[+3]_8 chr2R:7430862-7430982 7.7e-05 34_[+3]_78 chrX:19316820-19316940 7.7e-05 112_[+3] chr3R:29523900-29524020 9.1e-05 69_[+3]_43 chr3R:9432986-9433106 9.1e-05 47_[+3]_65 chr2L:495687-495807 9.1e-05 80_[+3]_32 chr3L:15210421-15210541 9.1e-05 108_[+3]_4 chrX:5988923-5989043 0.00011 95_[+3]_17 chr2L:14283062-14283182 0.00011 26_[+3]_86 chrX:6011008-6011128 0.00011 20_[+3]_92 chr3R:10757295-10757415 0.00016 80_[+3]_32 chr3R:25626124-25626244 0.00016 2_[+3]_110 chrX:18285354-18285474 0.00016 45_[+3]_67 chr3R:15644507-15644627 0.00019 21_[+3]_91 chrX:2655593-2655713 0.00019 27_[+3]_85 chr2L:13789117-13789237 0.00021 5_[+3]_107 chr2L:18145087-18145207 0.00022 76_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGATCGC width=8 seqs=35 chr3L:3095189-3095309 ( 42) GCGATCGC 1 chr2L:9944174-9944294 ( 75) GCGATCGC 1 chr2R:23212486-23212606 ( 68) GCGATCGC 1 chr2L:533845-533965 ( 23) TCGATCGC 1 chr2L:7294069-7294189 ( 112) TCGATCGC 1 chr2R:7657060-7657180 ( 70) GCGATCTC 1 chr2R:19817879-19817999 ( 37) GCGATCTC 1 chr3L:15227644-15227764 ( 46) GCGATCGA 1 chr3R:21419397-21419517 ( 41) GCGATCGA 1 chrX:4390011-4390131 ( 70) GCGATCGA 1 chr2R:10080893-10081013 ( 61) GCGATCGA 1 chr2R:11748799-11748919 ( 95) GCGATCGA 1 chr3R:30892808-30892928 ( 103) GCTATCGC 1 chr2R:19810482-19810602 ( 27) GCTATCGC 1 chr3L:11393156-11393276 ( 12) GCTATCGC 1 chr3R:8145098-8145218 ( 5) GCTATCGC 1 chrX:5717847-5717967 ( 42) GCCATCGC 1 chr2L:3777346-3777466 ( 35) GCCATCGC 1 chr2L:19429833-19429953 ( 105) GCCATCGC 1 chr2R:7430862-7430982 ( 35) CCGATCGC 1 chrX:19316820-19316940 ( 113) CCGATCGC 1 chr3R:29523900-29524020 ( 70) TCGATCTC 1 chr3R:9432986-9433106 ( 48) TCGATCTC 1 chr2L:495687-495807 ( 81) TCGATCTC 1 chr3L:15210421-15210541 ( 109) TCGATCTC 1 chrX:5988923-5989043 ( 96) TCGATCGA 1 chr2L:14283062-14283182 ( 27) TCGATCGA 1 chrX:6011008-6011128 ( 21) TCGATCGA 1 chr3R:10757295-10757415 ( 81) GCTATCTC 1 chr3R:25626124-25626244 ( 3) GCTATCTC 1 chrX:18285354-18285474 ( 46) TCCATCGC 1 chr3R:15644507-15644627 ( 22) GCCATCTC 1 chrX:2655593-2655713 ( 28) GCTATCGA 1 chr2L:13789117-13789237 ( 6) CCGATCTC 1 chr2L:18145087-18145207 ( 77) CCGATCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 5.1e+004 -1177 -97 142 7 -1177 216 -1177 -1177 -1177 -65 155 -44 184 -1177 -1177 -1177 -1177 -1177 -1177 188 -1177 216 -1177 -1177 -1177 -1177 167 7 3 168 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 5.1e+004 0.000000 0.114286 0.600000 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.657143 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.285714 0.714286 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGATCGC MEME-3 regular expression -------------------------------------------------------------------------------- [GT]C[GT]ATC[GT][CA] -------------------------------------------------------------------------------- Time 19.14 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATCCG MEME-4 width = 8 sites = 4 llr = 46 E-value = 4.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :aa::aa: probability G a::::::a matrix T ::::a::: bits 2.2 *** *** 1.9 *** **** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9926393-9926513 102 9.71e-06 AATGGCGGTA GCCATCCG GCGGGGGGTG chr3L:12695058-12695178 104 9.71e-06 GATCCATCCA GCCATCCG GCAAACACC chr3R:31564755-31564875 43 9.71e-06 CATTTTGCCG GCCATCCG CAACCAGTTT chr2L:6694584-6694704 24 9.71e-06 TGTTGCAGCT GCCATCCG CCCAGGAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9926393-9926513 9.7e-06 101_[+4]_11 chr3L:12695058-12695178 9.7e-06 103_[+4]_9 chr3R:31564755-31564875 9.7e-06 42_[+4]_70 chr2L:6694584-6694704 9.7e-06 23_[+4]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATCCG width=8 seqs=4 chr3R:9926393-9926513 ( 102) GCCATCCG 1 chr3L:12695058-12695178 ( 104) GCCATCCG 1 chr3R:31564755-31564875 ( 43) GCCATCCG 1 chr2L:6694584-6694704 ( 24) GCCATCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.5e+005 -865 -865 215 -865 -865 216 -865 -865 -865 216 -865 -865 183 -865 -865 -865 -865 -865 -865 188 -865 216 -865 -865 -865 216 -865 -865 -865 -865 215 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.5e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATCCG MEME-4 regular expression -------------------------------------------------------------------------------- GCCATCCG -------------------------------------------------------------------------------- Time 24.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCGCC MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a:a:aa probability G :a:a:a:: matrix T :::::::: bits 2.2 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7534662-7534782 17 6.42e-06 GCTGCCGCCG CGCGCGCC TCACATTTGA chr2R:11748799-11748919 87 6.42e-06 TGTTATCGTG CGCGCGCC GCGATCGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7534662-7534782 6.4e-06 16_[+5]_96 chr2R:11748799-11748919 6.4e-06 86_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCGCC width=8 seqs=2 chrX:7534662-7534782 ( 17) CGCGCGCC 1 chr2R:11748799-11748919 ( 87) CGCGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.2e+005 -765 216 -765 -765 -765 -765 215 -765 -765 216 -765 -765 -765 -765 215 -765 -765 216 -765 -765 -765 -765 215 -765 -765 216 -765 -765 -765 216 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-5 regular expression -------------------------------------------------------------------------------- CGCGCGCC -------------------------------------------------------------------------------- Time 30.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8207404-8207524 1.41e-01 69_[+2(5.54e-05)]_43 chr3R:8215667-8215787 6.66e-02 120 chr3R:26803243-26803363 1.25e-01 52_[+1(3.41e-05)]_60 chr3R:18144996-18145116 3.13e-01 120 chr3R:30204425-30204545 2.04e-02 68_[+1(3.41e-05)]_44 chr3L:11227847-11227967 2.95e-01 120 chr2L:6696368-6696488 3.42e-01 120 chrX:6011008-6011128 7.24e-05 48_[+4(6.07e-05)]_12_[+2(8.70e-05)]_\ 44 chr2L:19429833-19429953 9.34e-04 19_[+1(1.90e-05)]_77_[+3(6.70e-05)]_\ 8 chr3R:18075154-18075274 1.48e-01 120 chrX:19316820-19316940 4.74e-02 112_[+3(7.67e-05)] chr2L:3777346-3777466 2.64e-03 34_[+3(6.70e-05)]_43_[+1(1.90e-05)]_\ 27 chr3R:19312077-19312197 4.91e-01 120 chrX:5717847-5717967 4.66e-03 41_[+3(6.70e-05)]_71 chr3L:12666422-12666542 4.75e-01 120 chr3R:8145098-8145218 2.03e-02 4_[+3(5.73e-05)]_108 chr2L:19359061-19359181 6.49e-01 120 chr3R:8170870-8170990 7.03e-02 120 chr3R:8138210-8138330 3.28e-01 120 chr3R:22397832-22397952 7.70e-01 120 chr3R:19102608-19102728 3.53e-01 120 chr3L:15210421-15210541 9.54e-03 108_[+3(9.10e-05)]_4 chrX:7295814-7295934 3.88e-03 25_[+2(2.09e-05)]_87 chrX:6612626-6612746 1.90e-01 120 chr2R:16178002-16178122 3.36e-01 120 chr3R:29521019-29521139 1.61e-01 120 chr3R:18994203-18994323 2.36e-01 120 chr3L:10350025-10350145 3.84e-01 120 chrX:18285354-18285474 1.38e-01 120 chrX:2464573-2464693 1.26e-01 120 chr3R:8198441-8198561 2.42e-03 87_[+5(6.42e-06)]_25 chr3R:8214527-8214647 2.87e-01 120 chrX:11875570-11875690 4.57e-01 120 chr3L:17980479-17980599 3.26e-01 120 chr3L:14423777-14423897 1.46e-01 120 chr3L:11393156-11393276 2.62e-01 11_[+3(5.73e-05)]_101 chrX:15522525-15522645 1.04e-01 120 chr3R:10606084-10606204 2.86e-01 120 chr2R:23038138-23038258 5.18e-01 120 chr3L:6385120-6385240 8.14e-02 86_[+2(3.81e-05)]_26 chr3R:8214831-8214951 7.84e-01 120 chr2L:4373001-4373121 5.94e-03 112_[+1(3.41e-05)] chr3R:8145935-8146055 3.05e-01 120 chr2L:6694584-6694704 1.97e-03 23_[+4(9.71e-06)]_89 chr3R:24596357-24596477 7.00e-01 120 chrX:2195350-2195470 1.82e-02 120 chr2R:12538684-12538804 4.46e-01 120 chr2R:16806392-16806512 5.03e-01 120 chr3R:22165270-22165390 9.17e-01 120 chr2L:6464317-6464437 7.82e-02 120 chr2L:7679715-7679835 2.77e-02 34_[+2(5.54e-05)]_78 chr3R:23668691-23668811 2.69e-01 120 chr2L:18145087-18145207 7.40e-02 120 chr3L:21256492-21256612 8.05e-02 120 chr2R:11748799-11748919 5.00e-05 86_[+5(6.42e-06)]_[+3(4.55e-05)]_18 chrX:1385576-1385696 8.31e-03 79_[+1(1.90e-05)]_33 chr2R:22677589-22677709 4.62e-03 36_[+3(4.55e-05)]_15_[+2(6.97e-05)]_\ 53 chr2L:15310489-15310609 3.37e-01 120 chr3R:8227483-8227603 4.03e-01 120 chr2L:17395107-17395227 2.69e-02 15_[+2(3.81e-05)]_97 chr3R:26934012-26934132 2.79e-01 103_[+1(3.41e-05)]_9 chrX:8260410-8260530 2.19e-01 120 chr2R:19817879-19817999 1.17e-02 36_[+3(3.33e-05)]_76 chr2L:14268776-14268896 3.72e-01 120 chr2L:7294069-7294189 3.47e-02 111_[+3(2.15e-05)]_1 chr3L:1404142-1404262 2.27e-01 120 chr3R:6344020-6344140 1.32e-01 67_[+2(5.54e-05)]_45 chr2R:23040276-23040396 3.33e-01 120 chr3R:23217270-23217390 4.91e-01 120 chr3R:23056891-23057011 2.25e-01 120 chr2R:12649795-12649915 2.27e-02 101_[+2(6.97e-05)]_11 chr2R:10080893-10081013 5.69e-03 60_[+3(4.55e-05)]_11_[+1(3.41e-05)]_\ 33 chr2R:23208420-23208540 5.23e-02 120 chr3R:25626124-25626244 7.22e-02 120 chr3L:1448257-1448377 9.73e-02 68_[+2(6.97e-05)]_44 chr3R:29523039-29523159 1.30e-01 120 chr3R:19826533-19826653 6.72e-01 120 chr2R:19838231-19838351 1.12e-01 62_[+1(3.41e-05)]_50 chrX:11688290-11688410 1.99e-02 48_[+1(3.41e-05)]_64 chr2L:15107345-15107465 5.42e-01 120 chrX:19240335-19240455 1.06e-01 120 chr2L:6500796-6500916 6.00e-01 120 chr2R:13551986-13552106 1.30e-01 59_[+1(3.41e-05)]_53 chr3R:14103104-14103224 4.00e-03 120 chrX:4390011-4390131 4.85e-04 49_[+1(1.90e-05)]_12_[+3(4.55e-05)]_\ 43 chr2R:21358438-21358558 2.69e-01 120 chr2R:20045622-20045742 8.65e-01 120 chr2R:23212486-23212606 1.76e-03 67_[+3(9.75e-06)]_45 chr3L:21284760-21284880 1.54e-01 120 chr3L:2457041-2457161 5.33e-02 67_[+1(3.41e-05)]_45 chr2R:13938195-13938315 3.21e-03 120 chrX:4556082-4556202 2.79e-01 120 chrX:4608706-4608826 5.13e-01 120 chr2R:13500329-13500449 4.57e-01 120 chr3R:21823724-21823844 9.41e-01 120 chr3L:3875600-3875720 2.76e-01 120 chrX:600737-600857 6.03e-01 120 chr3R:14032925-14033045 4.68e-01 120 chr2L:19333198-19333318 6.50e-01 120 chr2L:14283062-14283182 4.41e-02 120 chr3L:14668788-14668908 4.90e-02 38_[+1(3.41e-05)]_74 chr2L:6268317-6268437 7.13e-01 120 chr3R:21241466-21241586 7.87e-01 120 chrX:1847971-1848091 5.94e-01 120 chr3R:16009145-16009265 8.46e-01 120 chr2L:7877226-7877346 7.09e-01 120 chr2L:12365382-12365502 2.71e-01 120 chr2R:18239401-18239521 5.99e-02 120 chr3L:8706448-8706568 4.44e-01 120 chr3R:26907212-26907332 2.82e-01 120 chrX:7222596-7222716 8.81e-02 120 chr3R:13261859-13261979 8.58e-03 11_[+2(6.97e-05)]_101 chr3L:19049803-19049923 1.15e-01 120 chr2R:17504503-17504623 4.37e-01 120 chr3L:8712806-8712926 2.77e-01 120 chr2L:14266157-14266277 1.83e-01 120 chr2L:6707581-6707701 6.26e-02 27_[+1(1.90e-05)]_85 chrX:5988923-5989043 1.90e-02 120 chr2L:2837883-2838003 1.71e-01 120 chr3R:31712441-31712561 3.86e-01 120 chr3L:15662913-15663033 6.19e-02 120 chrX:4454805-4454925 3.64e-02 120 chrX:8496776-8496896 3.13e-02 120 chr2L:18780404-18780524 5.77e-01 120 chrX:10115975-10116095 7.91e-01 120 chr3L:13065764-13065884 1.95e-01 120 chr3R:7142727-7142847 1.96e-02 88_[+4(6.07e-05)]_24 chr3R:31605964-31606084 3.23e-01 120 chr2L:3550703-3550823 2.78e-01 120 chr3L:13253231-13253351 3.81e-02 60_[+4(6.07e-05)]_52 chr3R:6643694-6643814 2.15e-01 120 chrX:2655593-2655713 2.91e-01 120 chr3L:17924052-17924172 5.53e-02 120 chr2R:19810482-19810602 1.74e-01 26_[+3(5.73e-05)]_86 chr3R:8202733-8202853 2.41e-01 120 chr2L:495486-495606 4.10e-01 120 chrX:5956808-5956928 1.10e-01 120 chr2R:15894916-15895036 2.35e-01 120 chrX:7296100-7296220 1.11e-01 120 chr3R:21414275-21414395 3.10e-01 120 chrX:6026091-6026211 3.79e-02 3_[+2(6.97e-05)]_109 chr2R:12401188-12401308 2.11e-01 120 chr3L:5618573-5618693 3.96e-01 120 chr3R:12363692-12363812 3.01e-01 120 chr2L:6255424-6255544 7.42e-01 120 chr3R:8210966-8211086 1.20e-01 120 chr3L:20946165-20946285 6.90e-01 120 chr2R:8568697-8568817 5.78e-01 120 chr2L:5247557-5247677 2.57e-01 120 chr2R:11533306-11533426 2.85e-01 120 chr3L:15755218-15755338 8.27e-02 120 chr3R:10757295-10757415 6.05e-03 39_[+1(1.90e-05)]_73 chr3L:18260922-18261042 8.56e-01 120 chr2L:4893787-4893907 4.03e-01 120 chr2L:533845-533965 7.32e-03 22_[+3(2.15e-05)]_90 chr3R:14480289-14480409 6.51e-01 120 chr3R:29317686-29317806 7.47e-01 120 chr3L:15303766-15303886 2.59e-01 120 chr3L:12838078-12838198 5.83e-01 120 chr2R:11494722-11494842 7.11e-02 26_[+2(8.70e-05)]_86 chr2L:13880911-13881031 4.95e-01 120 chr2L:5988550-5988670 1.54e-02 75_[+2(6.97e-05)]_37 chr3L:6779567-6779687 5.31e-01 120 chr2L:9123817-9123937 4.11e-01 120 chr2L:9944174-9944294 2.26e-03 48_[+2(5.54e-05)]_18_[+3(9.75e-06)]_\ 38 chr3R:31564755-31564875 1.45e-04 23_[+2(5.54e-05)]_11_[+4(9.71e-06)]_\ 70 chr3L:20196452-20196572 8.60e-03 120 chr3L:14207495-14207615 8.25e-01 120 chr3L:6883559-6883679 3.80e-02 91_[+2(6.97e-05)]_21 chr2R:7430862-7430982 6.81e-03 34_[+3(7.67e-05)]_78 chr3R:8192657-8192777 5.57e-02 120 chr3R:30892808-30892928 2.97e-02 75_[+3(9.10e-05)]_19_[+3(5.73e-05)]_\ 10 chr2R:7657060-7657180 4.26e-03 69_[+3(3.33e-05)]_43 chr3L:17966702-17966822 6.98e-01 120 chrX:9044979-9045099 1.67e-01 55_[+1(4.93e-05)]_57 chr2L:495687-495807 1.89e-01 80_[+3(9.10e-05)]_32 chr2R:19125029-19125149 3.93e-01 120 chr3R:15644507-15644627 4.23e-02 120 chr3R:21419397-21419517 1.33e-02 40_[+3(4.55e-05)]_47_[+3(2.15e-05)]_\ 17 chr2L:15408143-15408263 5.55e-01 120 chr2R:6681723-6681843 3.72e-01 120 chr2L:2453957-2454077 6.00e-01 120 chr3L:21510554-21510674 9.06e-01 120 chr3R:29868070-29868190 7.18e-01 120 chr3L:13108502-13108622 4.40e-01 120 chr3R:16600890-16601010 1.74e-01 120 chr2L:8530425-8530545 3.01e-01 120 chr2L:3583907-3584027 3.85e-01 120 chr2L:8009940-8010060 2.42e-01 120 chr2L:371886-372006 6.92e-02 120 chr3R:15328598-15328718 9.54e-02 120 chr3L:11236613-11236733 2.56e-01 120 chr2L:13789117-13789237 7.05e-02 120 chr3R:12259968-12260088 5.78e-01 120 chr2R:7373328-7373448 2.12e-02 75_[+1(3.41e-05)]_37 chr3L:12585142-12585262 1.85e-01 53_[+2(8.70e-05)]_59 chr3R:10656558-10656678 3.44e-01 120 chr2R:7476991-7477111 8.96e-01 120 chr2R:24587716-24587836 1.52e-01 39_[+2(8.70e-05)]_73 chr2R:16814803-16814923 1.84e-01 120 chrX:18985602-18985722 1.55e-01 60_[+2(5.54e-05)]_52 chr3L:12601329-12601449 6.46e-01 120 chr2L:8421599-8421719 3.15e-02 68_[+2(8.70e-05)]_44 chr3L:10997412-10997532 6.74e-02 2_[+2(6.97e-05)]_28_[+2(2.09e-05)]_\ 74 chr2R:14780214-14780334 5.87e-01 120 chrX:7534662-7534782 1.23e-03 16_[+5(6.42e-06)]_96 chr2L:13511009-13511129 7.21e-01 120 chr3R:13259779-13259899 4.55e-01 120 chr3R:13907497-13907617 7.28e-01 120 chrX:17506444-17506564 7.09e-02 120 chrX:9869483-9869603 8.04e-03 120 chr3L:1203314-1203434 6.10e-02 78_[+1(1.90e-05)]_34 chr2R:24740205-24740325 4.99e-02 120 chr3L:16892057-16892177 3.31e-02 33_[+4(6.07e-05)]_79 chrX:6062313-6062433 9.09e-03 59_[+2(5.54e-05)]_53 chr2R:15667478-15667598 1.88e-01 30_[+2(5.54e-05)]_82 chr2L:11325064-11325184 3.58e-01 120 chr3L:12695058-12695178 1.52e-02 103_[+4(9.71e-06)]_9 chrX:4502695-4502815 4.12e-02 55_[+2(2.09e-05)]_57 chr2R:21632941-21633061 1.64e-01 120 chr3R:9926393-9926513 2.95e-02 101_[+4(9.71e-06)]_11 chrX:8450608-8450728 5.29e-02 65_[+2(2.09e-05)]_47 chr3L:15227644-15227764 6.93e-02 45_[+3(4.55e-05)]_3_[+3(4.55e-05)]_\ 56 chr3R:18079479-18079599 7.65e-02 80_[+1(1.90e-05)]_32 chr3R:8203754-8203874 3.95e-02 120 chr2L:19951939-19952059 4.26e-02 48_[+2(5.54e-05)]_64 chr3L:4341240-4341360 6.01e-01 120 chr3L:12652426-12652546 1.36e-01 120 chr3R:10553754-10553874 7.77e-01 120 chr3L:2821643-2821763 2.55e-01 120 chr3R:9432986-9433106 1.61e-01 47_[+3(9.10e-05)]_65 chr2L:14237993-14238113 4.99e-01 120 chr2L:498529-498649 4.29e-01 120 chr2R:18603051-18603171 1.25e-01 120 chr3L:1675572-1675692 7.07e-01 120 chrX:5744356-5744476 8.24e-02 5_[+2(2.09e-05)]_107 chr3L:3095189-3095309 8.25e-03 41_[+3(9.75e-06)]_31_[+3(4.55e-05)]_\ 32 chr2R:9407381-9407501 4.62e-02 120 chr3R:19370509-19370629 5.62e-01 120 chr2R:22829170-22829290 4.96e-01 120 chr3R:23711311-23711431 7.50e-02 120 chr3R:6294144-6294264 4.07e-02 120 chr2R:15666844-15666964 9.33e-01 120 chr2R:19370886-19371006 6.89e-01 120 chr3R:22531959-22532079 9.86e-01 120 chr3R:29984058-29984178 1.33e-01 120 chr3L:7961688-7961808 8.18e-01 120 chr2L:6349183-6349303 2.90e-02 39_[+2(2.09e-05)]_73 chr2R:14347905-14348025 1.54e-01 120 chr3R:29523900-29524020 8.69e-03 69_[+3(9.10e-05)]_43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************