******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/grau.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:21042347-21042467 1.0000 120 chrX:1269877-1269997 1.0000 120 chr3R:20573538-20573658 1.0000 120 chr2L:1067834-1067954 1.0000 120 chr3R:12983349-12983469 1.0000 120 chr3L:14944812-14944932 1.0000 120 chr2R:14183888-14184008 1.0000 120 chrX:17174290-17174410 1.0000 120 chr2L:16602414-16602534 1.0000 120 chr3L:20921987-20922107 1.0000 120 chrX:2463359-2463479 1.0000 120 chrX:19684208-19684328 1.0000 120 chr3R:23790977-23791097 1.0000 120 chr3L:684905-685025 1.0000 120 chr3L:11124598-11124718 1.0000 120 chr2L:3713862-3713982 1.0000 120 chr3L:10660176-10660296 1.0000 120 chr3R:27149533-27149653 1.0000 120 chr2L:19209038-19209158 1.0000 120 chrX:11393340-11393460 1.0000 120 chr2R:20838566-20838686 1.0000 120 chr3L:8187548-8187668 1.0000 120 chrX:13234804-13234924 1.0000 120 chr2R:22525501-22525621 1.0000 120 chr3R:9035418-9035538 1.0000 120 chr3L:11766238-11766358 1.0000 120 chr3L:8865352-8865472 1.0000 120 chr3R:21065796-21065916 1.0000 120 chrX:16690666-16690786 1.0000 120 chr3R:26968136-26968256 1.0000 120 chrX:8583310-8583430 1.0000 120 chr2L:14476396-14476516 1.0000 120 chr3L:8553219-8553339 1.0000 120 chr3L:14574789-14574909 1.0000 120 chr3R:10375641-10375761 1.0000 120 chr3R:25532705-25532825 1.0000 120 chr3L:4854318-4854438 1.0000 120 chrX:16285322-16285442 1.0000 120 chrX:13232942-13233062 1.0000 120 chr2R:23560378-23560498 1.0000 120 chr3L:6855525-6855645 1.0000 120 chrX:9202479-9202599 1.0000 120 chr2R:8083733-8083853 1.0000 120 chrX:12625744-12625864 1.0000 120 chr2L:5726061-5726181 1.0000 120 chr2L:10680751-10680871 1.0000 120 chr2L:18983480-18983600 1.0000 120 chr3R:13989737-13989857 1.0000 120 chr3L:11204984-11205104 1.0000 120 chr3L:15093918-15094038 1.0000 120 chr3L:2581996-2582116 1.0000 120 chr3R:22588674-22588794 1.0000 120 chr3L:10517133-10517253 1.0000 120 chr3R:15342624-15342744 1.0000 120 chrX:9043846-9043966 1.0000 120 chr2R:16580291-16580411 1.0000 120 chrX:11109179-11109299 1.0000 120 chrX:10820912-10821032 1.0000 120 chr3L:3859445-3859565 1.0000 120 chr2L:5001036-5001156 1.0000 120 chrX:524471-524591 1.0000 120 chrX:13284092-13284212 1.0000 120 chr3R:20547351-20547471 1.0000 120 chr2L:1653381-1653501 1.0000 120 chr3R:28340777-28340897 1.0000 120 chr2R:10102635-10102755 1.0000 120 chr2R:17014975-17015095 1.0000 120 chr3R:10881229-10881349 1.0000 120 chr3L:16744341-16744461 1.0000 120 chr3L:8177969-8178089 1.0000 120 chrX:4940566-4940686 1.0000 120 chrX:1909717-1909837 1.0000 120 chrX:19897783-19897903 1.0000 120 chrX:3846542-3846662 1.0000 120 chr2R:14304053-14304173 1.0000 120 chr3R:31605179-31605299 1.0000 120 chr3R:22449409-22449529 1.0000 120 chr2L:19413669-19413789 1.0000 120 chr3L:6777614-6777734 1.0000 120 chr2R:15921066-15921186 1.0000 120 chr2L:7963028-7963148 1.0000 120 chr3R:9349522-9349642 1.0000 120 chrX:16570946-16571066 1.0000 120 chr2R:21506864-21506984 1.0000 120 chrX:8263376-8263496 1.0000 120 chr3R:6766435-6766555 1.0000 120 chr3R:30056064-30056184 1.0000 120 chr3R:27606052-27606172 1.0000 120 chr2L:14284806-14284926 1.0000 120 chr3R:28333184-28333304 1.0000 120 chrX:3344826-3344946 1.0000 120 chr3L:10677124-10677244 1.0000 120 chr3R:22588882-22589002 1.0000 120 chrX:6793030-6793150 1.0000 120 chrX:15497539-15497659 1.0000 120 chrX:7978254-7978374 1.0000 120 chr3L:6943986-6944106 1.0000 120 chr2L:8545839-8545959 1.0000 120 chr3R:21857595-21857715 1.0000 120 chr2L:1557089-1557209 1.0000 120 chr3L:11534974-11535094 1.0000 120 chrX:18300902-18301022 1.0000 120 chr3R:30865607-30865727 1.0000 120 chr3R:20594999-20595119 1.0000 120 chrX:9588025-9588145 1.0000 120 chr3R:30060718-30060838 1.0000 120 chr2L:12063223-12063343 1.0000 120 chr3L:1349104-1349224 1.0000 120 chrX:17832787-17832907 1.0000 120 chr3R:4913351-4913471 1.0000 120 chrX:11371034-11371154 1.0000 120 chr3L:20447514-20447634 1.0000 120 chr3L:16635936-16636056 1.0000 120 chr3L:5975178-5975298 1.0000 120 chr3R:21602791-21602911 1.0000 120 chr3L:14971973-14972093 1.0000 120 chr3R:25452017-25452137 1.0000 120 chr3R:18913094-18913214 1.0000 120 chr2R:22593249-22593369 1.0000 120 chr3L:17653005-17653125 1.0000 120 chr2L:2166556-2166676 1.0000 120 chr3L:1330544-1330664 1.0000 120 chr3L:4411138-4411258 1.0000 120 chr3R:30824038-30824158 1.0000 120 chrX:19372290-19372410 1.0000 120 chr3L:1746119-1746239 1.0000 120 chrX:11147542-11147662 1.0000 120 chr2R:20571315-20571435 1.0000 120 chrX:16671249-16671369 1.0000 120 chr3R:5083126-5083246 1.0000 120 chr3L:11367882-11368002 1.0000 120 chr2L:19163318-19163438 1.0000 120 chr3R:28830859-28830979 1.0000 120 chr2R:18422674-18422794 1.0000 120 chr2R:13159090-13159210 1.0000 120 chrX:19825330-19825450 1.0000 120 chrX:23010754-23010874 1.0000 120 chr2L:16281780-16281900 1.0000 120 chrX:3091055-3091175 1.0000 120 chr2L:8371514-8371634 1.0000 120 chr3L:8058843-8058963 1.0000 120 chr3R:7943356-7943476 1.0000 120 chr2L:5226574-5226694 1.0000 120 chr2L:21169357-21169477 1.0000 120 chr2R:15253514-15253634 1.0000 120 chr3L:8766738-8766858 1.0000 120 chr2R:7013003-7013123 1.0000 120 chr3L:6978185-6978305 1.0000 120 chr3R:14285746-14285866 1.0000 120 chr2L:7833406-7833526 1.0000 120 chrX:13565694-13565814 1.0000 120 chr2L:413023-413143 1.0000 120 chr3R:13805322-13805442 1.0000 120 chrX:11648865-11648985 1.0000 120 chrX:8213590-8213710 1.0000 120 chr2R:12706057-12706177 1.0000 120 chr3L:16497371-16497491 1.0000 120 chr3R:10354070-10354190 1.0000 120 chr3R:15292443-15292563 1.0000 120 chr2L:20417834-20417954 1.0000 120 chr3L:5576735-5576855 1.0000 120 chrX:3357296-3357416 1.0000 120 chr3R:14454282-14454402 1.0000 120 chrX:15406965-15407085 1.0000 120 chr2R:6812213-6812333 1.0000 120 chr3R:28848049-28848169 1.0000 120 chr2R:9742933-9743053 1.0000 120 chr2L:7991635-7991755 1.0000 120 chr2R:14995296-14995416 1.0000 120 chr2R:10551129-10551249 1.0000 120 chr2L:19424642-19424762 1.0000 120 chr3L:3788848-3788968 1.0000 120 chr3L:15283249-15283369 1.0000 120 chr3L:14986657-14986777 1.0000 120 chrX:7166442-7166562 1.0000 120 chrX:6090974-6091094 1.0000 120 chr2L:21263834-21263954 1.0000 120 chr2R:18435702-18435822 1.0000 120 chrX:8091413-8091533 1.0000 120 chr3R:4404211-4404331 1.0000 120 chr3R:9213199-9213319 1.0000 120 chr2L:4362548-4362668 1.0000 120 chr3L:905146-905266 1.0000 120 chr3R:16277164-16277284 1.0000 120 chr2R:18585128-18585248 1.0000 120 chrX:11419351-11419471 1.0000 120 chr3R:10380180-10380300 1.0000 120 chr3R:13997792-13997912 1.0000 120 chrX:16670444-16670564 1.0000 120 chrX:9456512-9456632 1.0000 120 chr3L:12050763-12050883 1.0000 120 chr3L:19925138-19925258 1.0000 120 chr3R:21854503-21854623 1.0000 120 chrX:20247903-20248023 1.0000 120 chr2L:19138475-19138595 1.0000 120 chrX:16617157-16617277 1.0000 120 chr3L:2532543-2532663 1.0000 120 chr3R:25491252-25491372 1.0000 120 chrX:5895180-5895300 1.0000 120 chr3L:4690831-4690951 1.0000 120 chrX:16406175-16406295 1.0000 120 chr3R:9460882-9461002 1.0000 120 chr2L:15274488-15274608 1.0000 120 chr2R:7477464-7477584 1.0000 120 chr3L:3785904-3786024 1.0000 120 chr2R:7452689-7452809 1.0000 120 chrX:9266199-9266319 1.0000 120 chrX:19371185-19371305 1.0000 120 chrX:11342187-11342307 1.0000 120 chrX:6705451-6705571 1.0000 120 chr3L:11721604-11721724 1.0000 120 chr2R:13940612-13940732 1.0000 120 chr3R:8930296-8930416 1.0000 120 chrX:19364197-19364317 1.0000 120 chr2R:11632904-11633024 1.0000 120 chr3L:9466662-9466782 1.0000 120 chr3L:3320151-3320271 1.0000 120 chr3L:12462031-12462151 1.0000 120 chrX:9220583-9220703 1.0000 120 chr2R:24746532-24746652 1.0000 120 chr3R:9679934-9680054 1.0000 120 chr2L:3846693-3846813 1.0000 120 chr3L:11547433-11547553 1.0000 120 chr3L:16026525-16026645 1.0000 120 chrX:8536792-8536912 1.0000 120 chr3L:11125928-11126048 1.0000 120 chr3L:8284831-8284951 1.0000 120 chr3L:3814650-3814770 1.0000 120 chrX:18136240-18136360 1.0000 120 chr3L:16146679-16146799 1.0000 120 chr3L:8288548-8288668 1.0000 120 chr2R:17870087-17870207 1.0000 120 chr2L:16352200-16352320 1.0000 120 chr2R:9444515-9444635 1.0000 120 chr2L:13903933-13904053 1.0000 120 chr3R:11606824-11606944 1.0000 120 chrX:13789102-13789222 1.0000 120 chr2R:12984367-12984487 1.0000 120 chr2L:19134856-19134976 1.0000 120 chrX:19867278-19867398 1.0000 120 chr2R:12960477-12960597 1.0000 120 chr3L:15836664-15836784 1.0000 120 chrX:14909146-14909266 1.0000 120 chr3L:4624021-4624141 1.0000 120 chr2L:1646638-1646758 1.0000 120 chr3R:19503155-19503275 1.0000 120 chr3R:4731101-4731221 1.0000 120 chr2R:17679376-17679496 1.0000 120 chr3L:15824802-15824922 1.0000 120 chr3L:11407217-11407337 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_grau/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/grau.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.324 C 0.182 G 0.181 T 0.313 Background letter frequencies (from file dataset with add-one prior applied): A 0.324 C 0.182 G 0.181 T 0.313 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BYACWGTR MEME-1 width = 8 sites = 127 llr = 944 E-value = 2.5e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a:6::5 pos.-specific C 33:a:::: probability G 41:::a:5 matrix T 36::4:a: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 ** ** (10.7 bits) 1.0 ** ** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GTACAGTG consensus TC T A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12984367-12984487 103 1.76e-05 GTCTTGAGCC GCACAGTG AAAAGACGAT chrX:13789102-13789222 88 1.76e-05 TTTCCATACC GTACAGTG AACTTAAAAA chr3L:3814650-3814770 4 1.76e-05 CAA GTACAGTG GAACACCGCT chr3L:11125928-11126048 28 1.76e-05 GTTGGCACAC GTACAGTG GTCGCTCTAT chrX:6705451-6705571 7 1.76e-05 TGTGCA GCACAGTG GTCGCTGGCT chr2L:20417834-20417954 40 1.76e-05 ACGTACCCAA GTACAGTG CAGCCCCCTT chr2L:5226574-5226694 33 1.76e-05 TGGGTCGCTG GTACAGTG AACTCTCGGT chr3L:4411138-4411258 21 1.76e-05 TGATTCATTG GTACAGTG GAGCCTCGCA chr3R:4913351-4913471 9 1.76e-05 GATCCCCT GTACAGTG GACTCAGGCA chr3R:28333184-28333304 30 1.76e-05 TTATCGCCAT GTACAGTG GATACTCGCG chrX:8263376-8263496 8 1.76e-05 GATCGCG GTACAGTG AGCACCCTGT chrX:3846542-3846662 17 1.76e-05 CTACGAACAG GTACAGTG GGCACTCGCC chrX:1909717-1909837 24 1.76e-05 GTGGAGTGGA GTACAGTG GAGGCTGGCC chrX:524471-524591 15 1.76e-05 ACAATGTAAG GTACAGTG AAATCGCGTT chr3L:3859445-3859565 70 1.76e-05 ACTGTGAACG GTACAGTG AAGCTGCGCC chrX:11109179-11109299 24 1.76e-05 GGCCTGGCCG GTACAGTG GAGCCTCGCT chr3L:8553219-8553339 8 1.76e-05 CAGCCAA GTACAGTG AAAGCTCCAC chr2L:14476396-14476516 12 1.76e-05 AGCCATCGCG GTACAGTG AGCACTGACA chr2R:22525501-22525621 16 1.76e-05 GAGTGCAACC GCACAGTG GAGACTGCCT chr2R:20838566-20838686 3 1.76e-05 CC GTACAGTG AGCACTCGCT chr2L:3713862-3713982 30 1.76e-05 AATAATTGAA GTACAGTG CGTATACGCT chrX:19684208-19684328 83 1.76e-05 CGCGCAGCTG GTACAGTG CACTTTGCAC chr3L:14944812-14944932 27 1.76e-05 CTCGGCTGTT GTACAGTG TGCCCTCGCC chr3R:21065796-21065916 33 3.45e-05 ACTACAGTAA GCACTGTG TATGAGCGCC chr3L:11124598-11124718 98 3.45e-05 TAGCCAAGTC GCACTGTG ATGAGCAAAG chrX:16406175-16406295 21 5.22e-05 ACGCTCTGCA CTACAGTG AACCCAACCC chr3L:3788848-3788968 19 5.22e-05 CAAAAACACC CTACAGTG AGCGCTCGGA chr3R:14454282-14454402 64 5.22e-05 ATTAGCTCCT CTACAGTG GTGGTTTACC chr3L:1330544-1330664 32 5.22e-05 GTTGATTGTA CTACAGTG AAAATCCTCT chr2L:8545839-8545959 21 5.22e-05 TAAGATACGG CTACAGTG GGAACCACAG chr3L:16744341-16744461 23 5.22e-05 GTACGTCTCT CTACAGTG AAACCTCCTT chr2L:1653381-1653501 20 5.22e-05 ATAGCAACTA CTACAGTG ATCACTACAG chr3L:15093918-15094038 32 5.22e-05 TTAAGTGCGC CTACAGTG GATGCTCGCT chr2R:8083733-8083853 34 5.22e-05 GTCGATTCAC CTACAGTG GAGCCTACGT chrX:13232942-13233062 2 5.22e-05 T CTACAGTG ATAGCTCGCT chr3L:12462031-12462151 67 6.92e-05 TAGTCTGTCC CCACTGTG TTTGTGCGCG chrX:6090974-6091094 101 6.92e-05 AAGCGGGTGC CTACTGTG GGTGCGTTAC chr3R:7943356-7943476 105 6.92e-05 TACCGAATGA CTACTGTG GCGATGTT chrX:19372290-19372410 93 6.92e-05 TATCGATGCC CCACTGTG ACCCATAAGA chr3R:23790977-23791097 108 6.92e-05 TTCCCACACT CTACTGTG CGTTT chr3L:16146679-16146799 79 1.01e-04 CCAATAACAA GTACAGTA TATATAAATT chr3L:3320151-3320271 10 1.01e-04 ATGATAGGA GTACAGTA TTCGCCCGAT chrX:19371185-19371305 16 1.01e-04 AACAGTGCAA GTACAGTA GACCATTGAT chr2L:7991635-7991755 70 1.01e-04 AGAGACCACT GTACAGTA TGTCTTATCG chr2R:7013003-7013123 33 1.01e-04 CTTCCAGACG GTACAGTA AAGCAACATC chr3L:8058843-8058963 20 1.01e-04 TTTCAATCGC GCACAGTA AAAACTACCA chr2L:19163318-19163438 4 1.01e-04 ACT GTACAGTA GGGTGCACCA chr3R:31605179-31605299 86 1.01e-04 TGGTTCCACT GTACAGTA GAGATAGAGC chr3L:4690831-4690951 45 1.61e-04 ATTAACGTTG TTACAGTG ATACCTTGTT chrX:20247903-20248023 69 1.61e-04 CTTCGAGTGC GCACTGTA GGCTCCGACT chr2L:21263834-21263954 27 1.61e-04 TATACATGGC TTACAGTG TTACCTCCTT chr2L:19424642-19424762 8 1.61e-04 TTTGCTG TTACAGTG CGCACACGCA chr3L:6978185-6978305 17 1.61e-04 GATAAATGTT TTACAGTG TAAATGAAAA chr2R:15253514-15253634 42 1.61e-04 ATTGCCGATG TCACAGTG AAATTCTGCT chr3R:18913094-18913214 52 1.61e-04 AAGTGTGAGG GTACTGTA CAGTCATACG chr2L:19413669-19413789 110 1.61e-04 TATCGAGAGG GCACTGTA GTG chr3L:8187548-8187668 34 1.61e-04 ATAACGTAAG TTACAGTG CACACTCGCT chr3L:2532543-2532663 75 1.91e-04 CAATTTCAGC TTACTGTG TCTTCACTGT chr2R:12706057-12706177 105 1.91e-04 CATTTAGATT TCACTGTG ATAGTAAA chr3L:8766738-8766858 77 1.91e-04 TTTTGGCGTG TCACTGTG TCAGTGTCAA chr3L:8865352-8865472 109 1.91e-04 AATTGAGTCT TTACTGTG CCTG chr2L:16602414-16602534 88 1.91e-04 TAGCGGAATT TCACTGTG CATTGTGTGG chr2R:14183888-14184008 92 1.91e-04 TAAGCAGGCT TCACTGTG GCCGCTTTTA chr2L:13903933-13904053 46 2.22e-04 TTCTGAAAAG CTACAGTA AACACAGCTG chr2L:4362548-4362668 17 2.22e-04 GCCCCGCCGG CCACAGTA AAGCCTGCCA chr3R:9349522-9349642 30 2.22e-04 GGCGATCAGT CTACAGTA AAACCTCCCT chr3R:22588674-22588794 17 2.22e-04 ACATTTTAGA CTACAGTA GAGCCTCGAC chr2L:10680751-10680871 88 2.22e-04 TGTATGCTTG CTACAGTA AGCTCTGGCT chrX:12625744-12625864 11 2.22e-04 AGATAAATAA CTACAGTA AAATTTTTCT chr2R:17870087-17870207 107 2.59e-04 TAGAGAGTGT CTACTGTA TTTGAG chr3L:8284831-8284951 4 2.59e-04 TTG CTACTGTA ATATACAAAC chr2R:14995296-14995416 109 2.59e-04 TAGCCAGGCA CCACTGTA CGCC chr3R:14285746-14285866 102 2.59e-04 CAACGAGGTC CCACTGTA GACATAAATC chr2R:18422674-18422794 95 2.59e-04 TAGTCAAGCT CTACTGTA GTCTtgctgg chr3L:14971973-14972093 27 2.59e-04 ACAAGTGTGA GGACAGTG AAGCCTGCCA chrX:19897783-19897903 33 2.59e-04 CCCTTCGAAC GGACAGTG AAGAGCAGAA chr3R:20547351-20547471 16 2.59e-04 AGGTAAGTTG GGACAGTG ATACCTCGTT chr2R:23560378-23560498 81 2.59e-04 TAGCCAGCGC CCACTGTA CTTCGCCGTG chrX:16690666-16690786 97 2.59e-04 TGGCCAGGCT CCACTGTA CGCCTGTCCA chr2L:19209038-19209158 108 2.59e-04 TAGGGACTAT CCACTGTA TCCAC chr2R:21042347-21042467 95 2.59e-04 TAGGCAATGT CTACTGTA GAACATTTAC chrX:4940566-4940686 83 2.65e-04 ACTTGAAAAT GGACTGTG CCACGCGAAA chr3L:15836664-15836784 98 3.85e-04 TACAGAGGCT TCACTGTA GCTGGCTCAC chr2L:19134856-19134976 70 3.85e-04 TAGCCAATAC TCACTGTA TTTTGTTTCC chr2L:16352200-16352320 53 3.85e-04 CGACCAATTT TCACTGTA CTTTTGCTCT chr3L:8288548-8288668 51 3.85e-04 TGAGCTGGTT TCACTGTA AAGTAATCCA chr3L:11547433-11547553 56 3.85e-04 tactgctgct TCACTGTA CTCCAAACTG chr2L:3846693-3846813 75 3.85e-04 CTCAGGGTGT TTACTGTA GTTCCGGGGT chrX:11342187-11342307 89 3.85e-04 CCGACAGGCT TTACTGTA CCGGTGGCTA chrX:9456512-9456632 111 3.85e-04 CAATTCCAAT TTACTGTA GT chr3L:5576735-5576855 90 3.85e-04 ACTCGAGGCT TCACTGTA CTCACCGGTG chr3R:15292443-15292563 89 3.85e-04 TGAGCAAGCT TCACTGTA TTTTTCCGTT chrX:11648865-11648985 97 3.85e-04 TAGCGTGTGC TCACTGTA AGCCTTAGCT chr2L:21169357-21169477 78 3.85e-04 GAGAAAGGTT TCACTGTA CTCTGCCCAT chr2R:22593249-22593369 113 3.85e-04 TAGCCAGATG TTACTGTA chr3L:5975178-5975298 78 3.85e-04 GGCGGGGAGT TCACTGTA GATAGTGCTA chrX:11371034-11371154 51 3.85e-04 TGGTCAGTGT TCACTGTA CCACGCACAC chrX:13284092-13284212 110 3.85e-04 TAATGGGTGC TCACTGTA GTT chr3L:11766238-11766358 71 3.85e-04 TAGGCACAGT TCACTGTA CTCAAATTTG chr3L:10660176-10660296 81 3.85e-04 TAACCAATGT TTACTGTA TTTTTTCGAC chr2L:1067834-1067954 80 3.85e-04 TATCGAAACT TCACTGTA CTCCAATGGC chr2R:11632904-11633024 17 4.19e-04 GAACTGCAAA TGACAGTG AAGAGTCGTG chr2R:6812213-6812333 107 4.19e-04 TAAGCAAGTT GGACTGTA GTAAGA chr2L:7963028-7963148 104 4.19e-04 TATAAAAGTT GGACTGTA AAGTTTTCT chr3L:8177969-8178089 64 4.19e-04 TAGAGAGGTT GGACTGTA GTTCCCGACA chr2R:10102635-10102755 103 4.19e-04 TAGCCAAGCT GGACTGTA AATCCAATTG chr3L:684905-685025 106 4.29e-04 TTGCGAGGCT TGACTGTG GCCACTT chr2R:13940612-13940732 72 4.72e-04 GAACACAGGA ACACAGTG AATGGGGTTA chr2R:18435702-18435822 4 4.72e-04 CAC ATACAGTG AGTACTGGGC chr2L:2166556-2166676 8 4.72e-04 CATTAGA ATACAGTG ATCACTAGAA chr3R:28340777-28340897 49 4.72e-04 GAAAAAATCA ATACAGTG GTTATCTGAT chr2R:16580291-16580411 15 4.72e-04 CCAACTAACG CGACAGTA GATAACCAGT chr3R:30824038-30824158 17 5.14e-04 CCGAACGCGA ATACTGTG TACCGAATGG chr3L:6777614-6777734 10 5.31e-04 TGTGGTTAT GTACAGTC AAAGCGAAAA chr3R:4731101-4731221 82 6.05e-04 CATTGCCAAT CCACAGTC AAAAAAAAGA chrX:18136240-18136360 49 6.05e-04 TAGGAAGGCC TGACTGTA GAGCAATCAA chr2R:7477464-7477584 90 6.05e-04 CCAGAAATTA TGACTGTA ATGAAGGTAG chr3L:19925138-19925258 48 6.05e-04 AAAAAGAGCG CTACAGTC TTGCCTGAAT chrX:9043846-9043966 86 6.05e-04 TATCGAAGCT TGACTGTA ATTCGATAGT chrX:19867278-19867398 11 6.79e-04 GTGGGTGGGA ATACAGTA ATCACTCGCT chr3L:3785904-3786024 96 6.79e-04 TAGGCAAGCA CCACTGTC CGAAAACAAC chr2L:15274488-15274608 56 6.79e-04 AGGCCGGTGT ATACAGTA GGTATTGCAT chrX:5895180-5895300 35 6.79e-04 ATTTCGCTAA ATACAGTA GAGACTGGCT chr3L:17653005-17653125 33 6.79e-04 ATCTAACAAT ATACAGTA TTAAAAAAAC chrX:8213590-8213710 110 7.33e-04 TACCGAGTTA ACACTGTA GCC chr3R:4404211-4404331 17 7.64e-04 ATTCGCACTT TTACAGTC AACCTCCCCT chr3L:905146-905266 110 8.05e-04 TAGCCAGTCC TCACTGTC GAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12984367-12984487 1.8e-05 102_[+1]_10 chrX:13789102-13789222 1.8e-05 87_[+1]_25 chr3L:3814650-3814770 1.8e-05 3_[+1]_109 chr3L:11125928-11126048 1.8e-05 27_[+1]_85 chrX:6705451-6705571 1.8e-05 6_[+1]_106 chr2L:20417834-20417954 1.8e-05 39_[+1]_73 chr2L:5226574-5226694 1.8e-05 32_[+1]_80 chr3L:4411138-4411258 1.8e-05 20_[+1]_92 chr3R:4913351-4913471 1.8e-05 8_[+1]_104 chr3R:28333184-28333304 1.8e-05 29_[+1]_83 chrX:8263376-8263496 1.8e-05 7_[+1]_105 chrX:3846542-3846662 1.8e-05 16_[+1]_96 chrX:1909717-1909837 1.8e-05 23_[+1]_89 chrX:524471-524591 1.8e-05 14_[+1]_98 chr3L:3859445-3859565 1.8e-05 69_[+1]_43 chrX:11109179-11109299 1.8e-05 23_[+1]_89 chr3L:8553219-8553339 1.8e-05 7_[+1]_105 chr2L:14476396-14476516 1.8e-05 11_[+1]_101 chr2R:22525501-22525621 1.8e-05 15_[+1]_97 chr2R:20838566-20838686 1.8e-05 2_[+1]_110 chr2L:3713862-3713982 1.8e-05 29_[+1]_83 chrX:19684208-19684328 1.8e-05 82_[+1]_30 chr3L:14944812-14944932 1.8e-05 26_[+1]_86 chr3R:21065796-21065916 3.5e-05 32_[+1]_80 chr3L:11124598-11124718 3.5e-05 97_[+1]_15 chrX:16406175-16406295 5.2e-05 20_[+1]_92 chr3L:3788848-3788968 5.2e-05 18_[+1]_94 chr3R:14454282-14454402 5.2e-05 63_[+1]_49 chr3L:1330544-1330664 5.2e-05 31_[+1]_81 chr2L:8545839-8545959 5.2e-05 20_[+1]_92 chr3L:16744341-16744461 5.2e-05 22_[+1]_90 chr2L:1653381-1653501 5.2e-05 19_[+1]_93 chr3L:15093918-15094038 5.2e-05 31_[+1]_81 chr2R:8083733-8083853 5.2e-05 33_[+1]_79 chrX:13232942-13233062 5.2e-05 1_[+1]_111 chr3L:12462031-12462151 6.9e-05 66_[+1]_46 chrX:6090974-6091094 6.9e-05 100_[+1]_12 chr3R:7943356-7943476 6.9e-05 104_[+1]_8 chrX:19372290-19372410 6.9e-05 92_[+1]_20 chr3R:23790977-23791097 6.9e-05 107_[+1]_5 chr3L:16146679-16146799 0.0001 78_[+1]_34 chr3L:3320151-3320271 0.0001 9_[+1]_103 chrX:19371185-19371305 0.0001 15_[+1]_97 chr2L:7991635-7991755 0.0001 69_[+1]_43 chr2R:7013003-7013123 0.0001 32_[+1]_80 chr3L:8058843-8058963 0.0001 19_[+1]_93 chr2L:19163318-19163438 0.0001 3_[+1]_109 chr3R:31605179-31605299 0.0001 85_[+1]_27 chr3L:4690831-4690951 0.00016 44_[+1]_68 chrX:20247903-20248023 0.00016 68_[+1]_44 chr2L:21263834-21263954 0.00016 26_[+1]_86 chr2L:19424642-19424762 0.00016 7_[+1]_105 chr3L:6978185-6978305 0.00016 16_[+1]_96 chr2R:15253514-15253634 0.00016 41_[+1]_71 chr3R:18913094-18913214 0.00016 51_[+1]_61 chr2L:19413669-19413789 0.00016 109_[+1]_3 chr3L:8187548-8187668 0.00016 33_[+1]_79 chr3L:2532543-2532663 0.00019 74_[+1]_38 chr2R:12706057-12706177 0.00019 104_[+1]_8 chr3L:8766738-8766858 0.00019 76_[+1]_36 chr3L:8865352-8865472 0.00019 108_[+1]_4 chr2L:16602414-16602534 0.00019 87_[+1]_25 chr2R:14183888-14184008 0.00019 91_[+1]_21 chr2L:13903933-13904053 0.00022 45_[+1]_67 chr2L:4362548-4362668 0.00022 16_[+1]_96 chr3R:9349522-9349642 0.00022 29_[+1]_83 chr3R:22588674-22588794 0.00022 16_[+1]_96 chr2L:10680751-10680871 0.00022 87_[+1]_25 chrX:12625744-12625864 0.00022 10_[+1]_102 chr2R:17870087-17870207 0.00026 106_[+1]_6 chr3L:8284831-8284951 0.00026 3_[+1]_109 chr2R:14995296-14995416 0.00026 108_[+1]_4 chr3R:14285746-14285866 0.00026 101_[+1]_11 chr2R:18422674-18422794 0.00026 94_[+1]_18 chr3L:14971973-14972093 0.00026 26_[+1]_86 chrX:19897783-19897903 0.00026 32_[+1]_80 chr3R:20547351-20547471 0.00026 15_[+1]_97 chr2R:23560378-23560498 0.00026 80_[+1]_32 chrX:16690666-16690786 0.00026 96_[+1]_16 chr2L:19209038-19209158 0.00026 107_[+1]_5 chr2R:21042347-21042467 0.00026 94_[+1]_18 chrX:4940566-4940686 0.00027 82_[+1]_30 chr3L:15836664-15836784 0.00038 97_[+1]_15 chr2L:19134856-19134976 0.00038 69_[+1]_43 chr2L:16352200-16352320 0.00038 52_[+1]_60 chr3L:8288548-8288668 0.00038 50_[+1]_62 chr3L:11547433-11547553 0.00038 55_[+1]_57 chr2L:3846693-3846813 0.00038 74_[+1]_38 chrX:11342187-11342307 0.00038 88_[+1]_24 chrX:9456512-9456632 0.00038 110_[+1]_2 chr3L:5576735-5576855 0.00038 89_[+1]_23 chr3R:15292443-15292563 0.00038 88_[+1]_24 chrX:11648865-11648985 0.00038 96_[+1]_16 chr2L:21169357-21169477 0.00038 77_[+1]_35 chr2R:22593249-22593369 0.00038 112_[+1] chr3L:5975178-5975298 0.00038 77_[+1]_35 chrX:11371034-11371154 0.00038 50_[+1]_62 chrX:13284092-13284212 0.00038 109_[+1]_3 chr3L:11766238-11766358 0.00038 70_[+1]_42 chr3L:10660176-10660296 0.00038 80_[+1]_32 chr2L:1067834-1067954 0.00038 79_[+1]_33 chr2R:11632904-11633024 0.00042 16_[+1]_96 chr2R:6812213-6812333 0.00042 106_[+1]_6 chr2L:7963028-7963148 0.00042 103_[+1]_9 chr3L:8177969-8178089 0.00042 63_[+1]_49 chr2R:10102635-10102755 0.00042 102_[+1]_10 chr3L:684905-685025 0.00043 105_[+1]_7 chr2R:13940612-13940732 0.00047 71_[+1]_41 chr2R:18435702-18435822 0.00047 3_[+1]_109 chr2L:2166556-2166676 0.00047 7_[+1]_105 chr3R:28340777-28340897 0.00047 48_[+1]_64 chr2R:16580291-16580411 0.00047 14_[+1]_98 chr3R:30824038-30824158 0.00051 16_[+1]_96 chr3L:6777614-6777734 0.00053 9_[+1]_103 chr3R:4731101-4731221 0.00061 81_[+1]_31 chrX:18136240-18136360 0.00061 48_[+1]_64 chr2R:7477464-7477584 0.00061 89_[+1]_23 chr3L:19925138-19925258 0.00061 47_[+1]_65 chrX:9043846-9043966 0.00061 85_[+1]_27 chrX:19867278-19867398 0.00068 10_[+1]_102 chr3L:3785904-3786024 0.00068 95_[+1]_17 chr2L:15274488-15274608 0.00068 55_[+1]_57 chrX:5895180-5895300 0.00068 34_[+1]_78 chr3L:17653005-17653125 0.00068 32_[+1]_80 chrX:8213590-8213710 0.00073 109_[+1]_3 chr3R:4404211-4404331 0.00076 16_[+1]_96 chr3L:905146-905266 0.0008 109_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BYACWGTR width=8 seqs=127 chr2R:12984367-12984487 ( 103) GCACAGTG 1 chrX:13789102-13789222 ( 88) GTACAGTG 1 chr3L:3814650-3814770 ( 4) GTACAGTG 1 chr3L:11125928-11126048 ( 28) GTACAGTG 1 chrX:6705451-6705571 ( 7) GCACAGTG 1 chr2L:20417834-20417954 ( 40) GTACAGTG 1 chr2L:5226574-5226694 ( 33) GTACAGTG 1 chr3L:4411138-4411258 ( 21) GTACAGTG 1 chr3R:4913351-4913471 ( 9) GTACAGTG 1 chr3R:28333184-28333304 ( 30) GTACAGTG 1 chrX:8263376-8263496 ( 8) GTACAGTG 1 chrX:3846542-3846662 ( 17) GTACAGTG 1 chrX:1909717-1909837 ( 24) GTACAGTG 1 chrX:524471-524591 ( 15) GTACAGTG 1 chr3L:3859445-3859565 ( 70) GTACAGTG 1 chrX:11109179-11109299 ( 24) GTACAGTG 1 chr3L:8553219-8553339 ( 8) GTACAGTG 1 chr2L:14476396-14476516 ( 12) GTACAGTG 1 chr2R:22525501-22525621 ( 16) GCACAGTG 1 chr2R:20838566-20838686 ( 3) GTACAGTG 1 chr2L:3713862-3713982 ( 30) GTACAGTG 1 chrX:19684208-19684328 ( 83) GTACAGTG 1 chr3L:14944812-14944932 ( 27) GTACAGTG 1 chr3R:21065796-21065916 ( 33) GCACTGTG 1 chr3L:11124598-11124718 ( 98) GCACTGTG 1 chrX:16406175-16406295 ( 21) CTACAGTG 1 chr3L:3788848-3788968 ( 19) CTACAGTG 1 chr3R:14454282-14454402 ( 64) CTACAGTG 1 chr3L:1330544-1330664 ( 32) CTACAGTG 1 chr2L:8545839-8545959 ( 21) CTACAGTG 1 chr3L:16744341-16744461 ( 23) CTACAGTG 1 chr2L:1653381-1653501 ( 20) CTACAGTG 1 chr3L:15093918-15094038 ( 32) CTACAGTG 1 chr2R:8083733-8083853 ( 34) CTACAGTG 1 chrX:13232942-13233062 ( 2) CTACAGTG 1 chr3L:12462031-12462151 ( 67) CCACTGTG 1 chrX:6090974-6091094 ( 101) CTACTGTG 1 chr3R:7943356-7943476 ( 105) CTACTGTG 1 chrX:19372290-19372410 ( 93) CCACTGTG 1 chr3R:23790977-23791097 ( 108) CTACTGTG 1 chr3L:16146679-16146799 ( 79) GTACAGTA 1 chr3L:3320151-3320271 ( 10) GTACAGTA 1 chrX:19371185-19371305 ( 16) GTACAGTA 1 chr2L:7991635-7991755 ( 70) GTACAGTA 1 chr2R:7013003-7013123 ( 33) GTACAGTA 1 chr3L:8058843-8058963 ( 20) GCACAGTA 1 chr2L:19163318-19163438 ( 4) GTACAGTA 1 chr3R:31605179-31605299 ( 86) GTACAGTA 1 chr3L:4690831-4690951 ( 45) TTACAGTG 1 chrX:20247903-20248023 ( 69) GCACTGTA 1 chr2L:21263834-21263954 ( 27) TTACAGTG 1 chr2L:19424642-19424762 ( 8) TTACAGTG 1 chr3L:6978185-6978305 ( 17) TTACAGTG 1 chr2R:15253514-15253634 ( 42) TCACAGTG 1 chr3R:18913094-18913214 ( 52) GTACTGTA 1 chr2L:19413669-19413789 ( 110) GCACTGTA 1 chr3L:8187548-8187668 ( 34) TTACAGTG 1 chr3L:2532543-2532663 ( 75) TTACTGTG 1 chr2R:12706057-12706177 ( 105) TCACTGTG 1 chr3L:8766738-8766858 ( 77) TCACTGTG 1 chr3L:8865352-8865472 ( 109) TTACTGTG 1 chr2L:16602414-16602534 ( 88) TCACTGTG 1 chr2R:14183888-14184008 ( 92) TCACTGTG 1 chr2L:13903933-13904053 ( 46) CTACAGTA 1 chr2L:4362548-4362668 ( 17) CCACAGTA 1 chr3R:9349522-9349642 ( 30) CTACAGTA 1 chr3R:22588674-22588794 ( 17) CTACAGTA 1 chr2L:10680751-10680871 ( 88) CTACAGTA 1 chrX:12625744-12625864 ( 11) CTACAGTA 1 chr2R:17870087-17870207 ( 107) CTACTGTA 1 chr3L:8284831-8284951 ( 4) CTACTGTA 1 chr2R:14995296-14995416 ( 109) CCACTGTA 1 chr3R:14285746-14285866 ( 102) CCACTGTA 1 chr2R:18422674-18422794 ( 95) CTACTGTA 1 chr3L:14971973-14972093 ( 27) GGACAGTG 1 chrX:19897783-19897903 ( 33) GGACAGTG 1 chr3R:20547351-20547471 ( 16) GGACAGTG 1 chr2R:23560378-23560498 ( 81) CCACTGTA 1 chrX:16690666-16690786 ( 97) CCACTGTA 1 chr2L:19209038-19209158 ( 108) CCACTGTA 1 chr2R:21042347-21042467 ( 95) CTACTGTA 1 chrX:4940566-4940686 ( 83) GGACTGTG 1 chr3L:15836664-15836784 ( 98) TCACTGTA 1 chr2L:19134856-19134976 ( 70) TCACTGTA 1 chr2L:16352200-16352320 ( 53) TCACTGTA 1 chr3L:8288548-8288668 ( 51) TCACTGTA 1 chr3L:11547433-11547553 ( 56) TCACTGTA 1 chr2L:3846693-3846813 ( 75) TTACTGTA 1 chrX:11342187-11342307 ( 89) TTACTGTA 1 chrX:9456512-9456632 ( 111) TTACTGTA 1 chr3L:5576735-5576855 ( 90) TCACTGTA 1 chr3R:15292443-15292563 ( 89) TCACTGTA 1 chrX:11648865-11648985 ( 97) TCACTGTA 1 chr2L:21169357-21169477 ( 78) TCACTGTA 1 chr2R:22593249-22593369 ( 113) TTACTGTA 1 chr3L:5975178-5975298 ( 78) TCACTGTA 1 chrX:11371034-11371154 ( 51) TCACTGTA 1 chrX:13284092-13284212 ( 110) TCACTGTA 1 chr3L:11766238-11766358 ( 71) TCACTGTA 1 chr3L:10660176-10660296 ( 81) TTACTGTA 1 chr2L:1067834-1067954 ( 80) TCACTGTA 1 chr2R:11632904-11633024 ( 17) TGACAGTG 1 chr2R:6812213-6812333 ( 107) GGACTGTA 1 chr2L:7963028-7963148 ( 104) GGACTGTA 1 chr3L:8177969-8178089 ( 64) GGACTGTA 1 chr2R:10102635-10102755 ( 103) GGACTGTA 1 chr3L:684905-685025 ( 106) TGACTGTG 1 chr2R:13940612-13940732 ( 72) ACACAGTG 1 chr2R:18435702-18435822 ( 4) ATACAGTG 1 chr2L:2166556-2166676 ( 8) ATACAGTG 1 chr3R:28340777-28340897 ( 49) ATACAGTG 1 chr2R:16580291-16580411 ( 15) CGACAGTA 1 chr3R:30824038-30824158 ( 17) ATACTGTG 1 chr3L:6777614-6777734 ( 10) GTACAGTC 1 chr3R:4731101-4731221 ( 82) CCACAGTC 1 chrX:18136240-18136360 ( 49) TGACTGTA 1 chr2R:7477464-7477584 ( 90) TGACTGTA 1 chr3L:19925138-19925258 ( 48) CTACAGTC 1 chrX:9043846-9043966 ( 86) TGACTGTA 1 chrX:19867278-19867398 ( 11) ATACAGTA 1 chr3L:3785904-3786024 ( 96) CCACTGTC 1 chr2L:15274488-15274608 ( 56) ATACAGTA 1 chrX:5895180-5895300 ( 35) ATACAGTA 1 chr3L:17653005-17653125 ( 33) ATACAGTA 1 chrX:8213590-8213710 ( 110) ACACTGTA 1 chr3R:4404211-4404331 ( 17) TTACAGTC 1 chr3L:905146-905266 ( 110) TCACTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.11093 E= 2.5e-052 -204 56 97 -7 -1363 79 -71 88 163 -1363 -1363 -1363 -1363 246 -1363 -1363 77 -1363 -1363 52 -1363 -1363 247 -1363 -1363 -1363 -1363 167 50 -195 146 -1363 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 2.5e-052 0.078740 0.267717 0.354331 0.299213 0.000000 0.314961 0.110236 0.574803 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.551181 0.000000 0.000000 0.448819 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.456693 0.047244 0.496063 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYACWGTR MEME-1 regular expression -------------------------------------------------------------------------------- [GTC][TC]AC[AT]GT[GA] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF VGCCTGSC MEME-2 width = 8 sites = 13 llr = 133 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:::3::: pos.-specific C 2:aa::69 probability G 4a:::a41 matrix T ::::7::: bits 2.5 *** * 2.2 *** * 2.0 *** * * 1.7 *** * * Relative 1.5 *** *** Entropy 1.2 *** *** (14.8 bits) 1.0 *** *** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCCTGCC consensus G A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13159090-13159210 35 2.04e-06 GCTATAGTCT GGCCTGCC TACAACTGAT chr3R:6766435-6766555 50 4.06e-06 GCAACAGTAA GGCCTGGC TAAGGAGCCC chrX:11109179-11109299 14 4.06e-06 GGAATGAGGG GGCCTGGC CGGTACAGTG chr3L:19925138-19925258 83 9.75e-06 ACCCTAGTCT AGCCTGCC CATCTTTTAA chr3R:16277164-16277284 20 9.75e-06 ATGTTAAGGA CGCCTGCC ATAATTATGC chr2L:4362548-4362668 26 9.75e-06 GCCACAGTAA AGCCTGCC ACTGGTCACA chr3L:14971973-14972093 36 9.75e-06 AGGACAGTGA AGCCTGCC AGAGCAACTA chr3R:12983349-12983469 34 9.75e-06 AATACAGAAG AGCCTGCC TAAGTCAAAC chrX:16690666-16690786 88 1.96e-05 GGATCGTCTT GGCCAGGC TCCACTGTAC chr3L:3859445-3859565 97 2.55e-05 CAGAGCTAAG CGCCAGCC AGTCGCCACT chrX:11342187-11342307 57 3.14e-05 AACCAAAACA CGCCAGGC ATTGTATTGT chr2R:14995296-14995416 100 3.14e-05 GTTTGGATAT AGCCAGGC ACCACTGTAC chrX:19825330-19825450 31 3.34e-05 AAATAATCCA GGCCTGCG TCCATCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13159090-13159210 2e-06 34_[+2]_78 chr3R:6766435-6766555 4.1e-06 49_[+2]_63 chrX:11109179-11109299 4.1e-06 13_[+2]_99 chr3L:19925138-19925258 9.8e-06 82_[+2]_30 chr3R:16277164-16277284 9.8e-06 19_[+2]_93 chr2L:4362548-4362668 9.8e-06 25_[+2]_87 chr3L:14971973-14972093 9.8e-06 35_[+2]_77 chr3R:12983349-12983469 9.8e-06 33_[+2]_79 chrX:16690666-16690786 2e-05 87_[+2]_25 chr3L:3859445-3859565 2.6e-05 96_[+2]_16 chrX:11342187-11342307 3.1e-05 56_[+2]_56 chr2R:14995296-14995416 3.1e-05 99_[+2]_13 chrX:19825330-19825450 3.3e-05 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGCCTGSC width=8 seqs=13 chr2R:13159090-13159210 ( 35) GGCCTGCC 1 chr3R:6766435-6766555 ( 50) GGCCTGGC 1 chrX:11109179-11109299 ( 14) GGCCTGGC 1 chr3L:19925138-19925258 ( 83) AGCCTGCC 1 chr3R:16277164-16277284 ( 20) CGCCTGCC 1 chr2L:4362548-4362668 ( 26) AGCCTGCC 1 chr3L:14971973-14972093 ( 36) AGCCTGCC 1 chr3R:12983349-12983469 ( 34) AGCCTGCC 1 chrX:16690666-16690786 ( 88) GGCCAGGC 1 chr3L:3859445-3859565 ( 97) CGCCAGCC 1 chrX:11342187-11342307 ( 57) CGCCAGGC 1 chr2R:14995296-14995416 ( 100) AGCCAGGC 1 chrX:19825330-19825450 ( 31) GGCCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 1.1e+003 25 34 109 -1035 -1035 -1035 247 -1035 -1035 246 -1035 -1035 -1035 246 -1035 -1035 -7 -1035 -1035 114 -1035 -1035 247 -1035 -1035 176 109 -1035 -1035 234 -123 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.1e+003 0.384615 0.230769 0.384615 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.000000 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.615385 0.384615 0.000000 0.000000 0.923077 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGCCTGSC MEME-2 regular expression -------------------------------------------------------------------------------- [AGC]GCC[TA]G[CG]C -------------------------------------------------------------------------------- Time 13.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMCTCGC MEME-3 width = 8 sites = 11 llr = 117 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::53:::: pos.-specific C :a57:8:a probability G a:::12a: matrix T ::::9::: bits 2.5 ** ** 2.2 ** ** 2.0 ** ** 1.7 ** *** Relative 1.5 ** * *** Entropy 1.2 ** ***** (15.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACTCGC consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13997792-13997912 43 2.05e-06 TTGACAGGCT GCCCTCGC TATAGAGGAC chr3R:21857595-21857715 4 2.05e-06 TGG GCCCTCGC AAAGGGATAC chr3L:14944812-14944932 36 2.05e-06 TGTACAGTGT GCCCTCGC CGACAAGGGA chrX:3846542-3846662 26 5.69e-06 GGTACAGTGG GCACTCGC CTAATGCATT chr2R:20838566-20838686 12 5.69e-06 CGTACAGTGA GCACTCGC TAAGGGTTGC chr2R:21506864-21506984 3 1.14e-05 TG GCCCTGGC TTATTATCGC chr2L:14476396-14476516 3 1.14e-05 AA GCCATCGC GGTACAGTGA chrX:17832787-17832907 89 2.27e-05 AGGGCCGAAA GCAATCGC AGCATATGTG chr2R:17014975-17015095 53 2.27e-05 AAATTGCGCT GCAATCGC TTCCATACGC chrX:9043846-9043966 111 2.27e-05 AGTTAATTAG GCACTGGC AC chr2L:7991635-7991755 87 2.48e-05 ATGTCTTATC GCACGCGC ACACTTTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13997792-13997912 2e-06 42_[+3]_70 chr3R:21857595-21857715 2e-06 3_[+3]_109 chr3L:14944812-14944932 2e-06 35_[+3]_77 chrX:3846542-3846662 5.7e-06 25_[+3]_87 chr2R:20838566-20838686 5.7e-06 11_[+3]_101 chr2R:21506864-21506984 1.1e-05 2_[+3]_110 chr2L:14476396-14476516 1.1e-05 2_[+3]_110 chrX:17832787-17832907 2.3e-05 88_[+3]_24 chr2R:17014975-17015095 2.3e-05 52_[+3]_60 chrX:9043846-9043966 2.3e-05 110_[+3]_2 chr2L:7991635-7991755 2.5e-05 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMCTCGC width=8 seqs=11 chr3R:13997792-13997912 ( 43) GCCCTCGC 1 chr3R:21857595-21857715 ( 4) GCCCTCGC 1 chr3L:14944812-14944932 ( 36) GCCCTCGC 1 chrX:3846542-3846662 ( 26) GCACTCGC 1 chr2R:20838566-20838686 ( 12) GCACTCGC 1 chr2R:21506864-21506984 ( 3) GCCCTGGC 1 chr2L:14476396-14476516 ( 3) GCCATCGC 1 chrX:17832787-17832907 ( 89) GCAATCGC 1 chr2R:17014975-17015095 ( 53) GCAATCGC 1 chrX:9043846-9043966 ( 111) GCACTGGC 1 chr2L:7991635-7991755 ( 87) GCACGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 1.1e+003 -1010 -1010 247 -1010 -1010 246 -1010 -1010 75 132 -1010 -1010 -25 200 -1010 -1010 -1010 -1010 -99 154 -1010 217 1 -1010 -1010 -1010 247 -1010 -1010 246 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.454545 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCTCGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[AC][CA]TCGC -------------------------------------------------------------------------------- Time 19.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTGTGC MEME-4 width = 8 sites = 10 llr = 106 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :71:::1a probability G a193a:9: matrix T :2:7:a:: bits 2.5 * * * 2.2 * * * 2.0 * * * ** 1.7 * * **** Relative 1.5 * * **** Entropy 1.2 *** **** (15.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTGTGC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11648865-11648985 89 3.48e-06 GTCCTACTTA GCGTGTGC TCACTGTAAG chrX:1909717-1909837 69 3.48e-06 CGATAAGGTG GCGTGTGC TGGAACGAGT chr3L:16744341-16744461 87 3.48e-06 AAAAGATATT GCGTGTGC GTCGTTGGCC chrX:6090974-6091094 93 5.50e-06 GTATTTCTAA GCGGGTGC CTACTGTGGG chrX:18300902-18301022 51 5.50e-06 ATCCTTTGCA GCGGGTGC GACCGGTACA chr3R:13805322-13805442 60 1.15e-05 GTCTGTCTGA GTGTGTGC GCACCGTACA chr3R:28340777-28340897 17 1.15e-05 ACGCTtgtgt gtgtgtgc tgctgtttgt chrX:16285322-16285442 11 1.50e-05 TGAGAACCAA GGGTGTGC ACTGAATCGA chr3R:21065796-21065916 48 2.74e-05 GTGTATGAGC GCCTGTGC CTTGCTCAGC chrX:1269877-1269997 91 3.15e-05 ACCGTAGCGA GCGGGTCC TGTATATGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11648865-11648985 3.5e-06 88_[+4]_24 chrX:1909717-1909837 3.5e-06 68_[+4]_44 chr3L:16744341-16744461 3.5e-06 86_[+4]_26 chrX:6090974-6091094 5.5e-06 92_[+4]_20 chrX:18300902-18301022 5.5e-06 50_[+4]_62 chr3R:13805322-13805442 1.1e-05 59_[+4]_53 chr3R:28340777-28340897 1.1e-05 16_[+4]_96 chrX:16285322-16285442 1.5e-05 10_[+4]_102 chr3R:21065796-21065916 2.7e-05 47_[+4]_65 chrX:1269877-1269997 3.1e-05 90_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTGTGC width=8 seqs=10 chrX:11648865-11648985 ( 89) GCGTGTGC 1 chrX:1909717-1909837 ( 69) GCGTGTGC 1 chr3L:16744341-16744461 ( 87) GCGTGTGC 1 chrX:6090974-6091094 ( 93) GCGGGTGC 1 chrX:18300902-18301022 ( 51) GCGGGTGC 1 chr3R:13805322-13805442 ( 60) GTGTGTGC 1 chr3R:28340777-28340897 ( 17) GTGTGTGC 1 chrX:16285322-16285442 ( 11) GGGTGTGC 1 chr3R:21065796-21065916 ( 48) GCCTGTGC 1 chrX:1269877-1269997 ( 91) GCGGGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.9e+003 -997 -997 247 -997 -997 194 -85 -65 -997 -86 231 -997 -997 -997 73 116 -997 -997 247 -997 -997 -997 -997 167 -997 -86 231 -997 -997 246 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.100000 0.200000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGTGC MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]G[TG]GTGC -------------------------------------------------------------------------------- Time 25.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GKGCGCRC MEME-5 width = 8 sites = 6 llr = 69 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C :::a:a:a probability G a7a:8:7: matrix T :3::2::: bits 2.5 * ** * * 2.2 * ** * * 2.0 * ** * * 1.7 * **** * Relative 1.5 * **** * Entropy 1.2 ******** (16.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGCGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19424642-19424762 67 1.17e-06 GCGATGAAGT GGGCGCGC ACTCACTAAT chr3L:12462031-12462151 78 3.20e-06 CACTGTGTTT GTGCGCGC GGCTTCATTT chr2R:14183888-14184008 56 3.20e-06 CAAGTCAAAT GTGCGCGC TGGTGTGCTG chrX:19372290-19372410 74 5.29e-06 AGTACGGAAC GGGCGCAC ATATCGATGC chrX:18300902-18301022 69 5.29e-06 GACCGGTACA GGGCGCAC AGGCCcaaca chr3R:23790977-23791097 27 7.32e-06 GATCACAGTG GGGCTCGC CTAAGAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19424642-19424762 1.2e-06 66_[+5]_46 chr3L:12462031-12462151 3.2e-06 77_[+5]_35 chr2R:14183888-14184008 3.2e-06 55_[+5]_57 chrX:19372290-19372410 5.3e-06 73_[+5]_39 chrX:18300902-18301022 5.3e-06 68_[+5]_44 chr3R:23790977-23791097 7.3e-06 26_[+5]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGCGCRC width=8 seqs=6 chr2L:19424642-19424762 ( 67) GGGCGCGC 1 chr3L:12462031-12462151 ( 78) GTGCGCGC 1 chr2R:14183888-14184008 ( 56) GTGCGCGC 1 chrX:19372290-19372410 ( 74) GGGCGCAC 1 chrX:18300902-18301022 ( 69) GGGCGCAC 1 chr3R:23790977-23791097 ( 27) GGGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 1.7e+004 -923 -923 246 -923 -923 -923 188 9 -923 -923 246 -923 -923 246 -923 -923 -923 -923 220 -91 -923 246 -923 -923 4 -923 188 -923 -923 246 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGCRC MEME-5 regular expression -------------------------------------------------------------------------------- G[GT]GCGC[GA]C -------------------------------------------------------------------------------- Time 31.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21042347-21042467 2.45e-01 120 chrX:1269877-1269997 2.99e-02 90_[+4(3.15e-05)]_22 chr3R:20573538-20573658 4.26e-01 120 chr2L:1067834-1067954 6.66e-02 120 chr3R:12983349-12983469 4.22e-02 33_[+2(9.75e-06)]_79 chr3L:14944812-14944932 9.76e-06 26_[+1(1.76e-05)]_1_[+3(2.05e-06)]_\ 77 chr2R:14183888-14184008 1.32e-04 55_[+5(3.20e-06)]_57 chrX:17174290-17174410 9.96e-01 120 chr2L:16602414-16602534 3.04e-01 120 chr3L:20921987-20922107 5.14e-02 120 chrX:2463359-2463479 4.07e-01 120 chrX:19684208-19684328 6.84e-03 39_[+1(1.76e-05)]_35_[+1(1.76e-05)]_\ 6_[+1(1.76e-05)]_16 chr3R:23790977-23791097 3.13e-04 26_[+5(7.32e-06)]_73_[+1(6.92e-05)]_\ 5 chr3L:684905-685025 7.94e-02 120 chr3L:11124598-11124718 1.60e-03 97_[+1(3.45e-05)]_15 chr2L:3713862-3713982 2.76e-03 29_[+1(1.76e-05)]_83 chr3L:10660176-10660296 2.86e-01 120 chr3R:27149533-27149653 9.97e-01 120 chr2L:19209038-19209158 5.51e-01 120 chrX:11393340-11393460 9.22e-01 120 chr2R:20838566-20838686 5.88e-05 2_[+1(1.76e-05)]_1_[+3(5.69e-06)]_\ 101 chr3L:8187548-8187668 2.28e-03 120 chrX:13234804-13234924 1.20e-02 120 chr2R:22525501-22525621 1.31e-03 15_[+1(1.76e-05)]_97 chr3R:9035418-9035538 9.81e-01 120 chr3L:11766238-11766358 1.45e-02 3_[+5(6.60e-05)]_109 chr3L:8865352-8865472 5.25e-02 120 chr3R:21065796-21065916 3.03e-04 32_[+1(3.45e-05)]_7_[+4(2.74e-05)]_\ 65 chrX:16690666-16690786 2.11e-04 87_[+2(1.96e-05)]_10_[+4(6.50e-05)]_\ 7 chr3R:26968136-26968256 9.27e-01 120 chrX:8583310-8583430 7.80e-01 120 chr2L:14476396-14476516 6.30e-05 2_[+3(1.14e-05)]_1_[+1(1.76e-05)]_\ 101 chr3L:8553219-8553339 4.90e-03 7_[+1(1.76e-05)]_105 chr3L:14574789-14574909 8.95e-01 120 chr3R:10375641-10375761 9.86e-01 120 chr3R:25532705-25532825 1.00e+00 120 chr3L:4854318-4854438 8.37e-01 120 chrX:16285322-16285442 8.33e-03 10_[+4(1.50e-05)]_102 chrX:13232942-13233062 1.35e-01 1_[+1(5.22e-05)]_111 chr2R:23560378-23560498 1.29e-04 72_[+3(3.17e-05)]_40 chr3L:6855525-6855645 9.99e-01 120 chrX:9202479-9202599 8.05e-01 120 chr2R:8083733-8083853 8.75e-02 33_[+1(5.22e-05)]_79 chrX:12625744-12625864 6.62e-01 120 chr2L:5726061-5726181 5.97e-02 120 chr2L:10680751-10680871 3.11e-02 120 chr2L:18983480-18983600 8.75e-01 120 chr3R:13989737-13989857 7.42e-01 120 chr3L:11204984-11205104 9.98e-01 120 chr3L:15093918-15094038 6.73e-03 31_[+1(5.22e-05)]_81 chr3L:2581996-2582116 9.55e-01 120 chr3R:22588674-22588794 1.83e-01 120 chr3L:10517133-10517253 7.18e-01 120 chr3R:15342624-15342744 7.04e-03 18_[+2(6.26e-05)]_94 chrX:9043846-9043966 2.40e-02 110_[+3(2.27e-05)]_2 chr2R:16580291-16580411 2.12e-01 120 chrX:11109179-11109299 8.95e-06 13_[+2(4.06e-06)]_2_[+1(1.76e-05)]_\ 89 chrX:10820912-10821032 1.36e-01 120 chr3L:3859445-3859565 1.24e-04 69_[+1(1.76e-05)]_19_[+2(2.55e-05)]_\ 16 chr2L:5001036-5001156 7.50e-02 120 chrX:524471-524591 2.96e-03 14_[+1(1.76e-05)]_98 chrX:13284092-13284212 5.98e-03 105_[+5(2.43e-05)]_7 chr3R:20547351-20547471 3.01e-01 120 chr2L:1653381-1653501 9.34e-04 19_[+1(5.22e-05)]_93 chr3R:28340777-28340897 8.58e-03 16_[+4(1.15e-05)]_96 chr2R:10102635-10102755 1.75e-02 120 chr2R:17014975-17015095 8.34e-04 52_[+3(2.27e-05)]_60 chr3R:10881229-10881349 9.99e-01 120 chr3L:16744341-16744461 5.17e-04 22_[+1(5.22e-05)]_56_[+4(3.48e-06)]_\ 26 chr3L:8177969-8178089 5.06e-01 120 chrX:4940566-4940686 5.99e-02 120 chrX:1909717-1909837 7.34e-05 23_[+1(1.76e-05)]_37_[+4(3.48e-06)]_\ 44 chrX:19897783-19897903 2.04e-02 120 chrX:3846542-3846662 1.69e-05 16_[+1(1.76e-05)]_1_[+3(5.69e-06)]_\ 87 chr2R:14304053-14304173 9.57e-01 120 chr3R:31605179-31605299 1.32e-01 120 chr3R:22449409-22449529 2.46e-01 120 chr2L:19413669-19413789 8.95e-02 120 chr3L:6777614-6777734 4.82e-01 120 chr2R:15921066-15921186 4.45e-01 120 chr2L:7963028-7963148 5.98e-01 120 chr3R:9349522-9349642 7.89e-02 120 chrX:16570946-16571066 9.96e-01 120 chr2R:21506864-21506984 6.81e-04 2_[+3(1.14e-05)]_110 chrX:8263376-8263496 3.70e-03 7_[+1(1.76e-05)]_105 chr3R:6766435-6766555 8.39e-04 49_[+2(4.06e-06)]_63 chr3R:30056064-30056184 9.61e-02 120 chr3R:27606052-27606172 9.70e-01 120 chr2L:14284806-14284926 1.61e-02 120 chr3R:28333184-28333304 2.27e-02 29_[+1(1.76e-05)]_83 chrX:3344826-3344946 9.79e-01 120 chr3L:10677124-10677244 9.91e-01 120 chr3R:22588882-22589002 8.81e-01 120 chrX:6793030-6793150 9.81e-01 120 chrX:15497539-15497659 2.46e-01 120 chrX:7978254-7978374 3.13e-01 120 chr3L:6943986-6944106 5.51e-01 120 chr2L:8545839-8545959 1.42e-01 20_[+1(5.22e-05)]_92 chr3R:21857595-21857715 3.29e-03 3_[+3(2.05e-06)]_109 chr2L:1557089-1557209 9.78e-01 120 chr3L:11534974-11535094 3.75e-01 120 chrX:18300902-18301022 2.04e-06 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chr3R:19503155-19503275 6.45e-02 120 chr3R:4731101-4731221 1.22e-01 120 chr2R:17679376-17679496 4.94e-01 120 chr3L:15824802-15824922 1.76e-01 120 chr3L:11407217-11407337 7.37e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************