******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/gl.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:604727-604847 1.0000 120 chr2R:7425143-7425263 1.0000 120 chr2R:18941639-18941759 1.0000 120 chr2L:12480953-12481073 1.0000 120 chr3R:18375080-18375200 1.0000 120 chr3R:9933519-9933639 1.0000 120 chr2R:13481169-13481289 1.0000 120 chr3L:10386735-10386855 1.0000 120 chr3R:22322203-22322323 1.0000 120 chr2R:24553611-24553731 1.0000 120 chr3L:6447858-6447978 1.0000 120 chr3R:23785045-23785165 1.0000 120 chr2L:21013692-21013812 1.0000 120 chr3R:26949355-26949475 1.0000 120 chr2R:15053156-15053276 1.0000 120 chr3L:11033313-11033433 1.0000 120 chr3R:24947443-24947563 1.0000 120 chr3R:11859288-11859408 1.0000 120 chr3R:5038120-5038240 1.0000 120 chr3L:6344754-6344874 1.0000 120 chr2R:10601223-10601343 1.0000 120 chr3L:8421926-8422046 1.0000 120 chr2L:12543973-12544093 1.0000 120 chr3L:16486195-16486315 1.0000 120 chr2R:8896339-8896459 1.0000 120 chrX:8580930-8581050 1.0000 120 chr2R:21496717-21496837 1.0000 120 chr3L:14450672-14450792 1.0000 120 chr2L:3095545-3095665 1.0000 120 chr2L:9945204-9945324 1.0000 120 chr3L:10559438-10559558 1.0000 120 chr3R:21653558-21653678 1.0000 120 chr3R:20547886-20548006 1.0000 120 chr3R:12288349-12288469 1.0000 120 chr3L:41833-41953 1.0000 120 chrX:13126334-13126454 1.0000 120 chr3R:27925845-27925965 1.0000 120 chr3R:24004145-24004265 1.0000 120 chrX:13116589-13116709 1.0000 120 chrX:18836530-18836650 1.0000 120 chr2L:14665333-14665453 1.0000 120 chr3R:10539575-10539695 1.0000 120 chr3R:16334392-16334512 1.0000 120 chr3R:31719089-31719209 1.0000 120 chrX:19485190-19485310 1.0000 120 chr2R:10601984-10602104 1.0000 120 chr3L:22862774-22862894 1.0000 120 chr3R:10592978-10593098 1.0000 120 chr3L:16497108-16497228 1.0000 120 chr2R:7472421-7472541 1.0000 120 chr3L:14059699-14059819 1.0000 120 chr3L:19079095-19079215 1.0000 120 chr3R:22326732-22326852 1.0000 120 chr2L:11027497-11027617 1.0000 120 chr3L:10930556-10930676 1.0000 120 chrX:7100820-7100940 1.0000 120 chr3R:28913184-28913304 1.0000 120 chr3R:12717091-12717211 1.0000 120 chr3R:8164990-8165110 1.0000 120 chr3R:30290635-30290755 1.0000 120 chr2R:11214031-11214151 1.0000 120 chr3R:18371451-18371571 1.0000 120 chr3R:17019287-17019407 1.0000 120 chr2L:16590495-16590615 1.0000 120 chr3R:5737514-5737634 1.0000 120 chr3R:26004501-26004621 1.0000 120 chr3L:5821644-5821764 1.0000 120 chrX:7573065-7573185 1.0000 120 chr2L:7207811-7207931 1.0000 120 chr3R:27069341-27069461 1.0000 120 chr3L:12014436-12014556 1.0000 120 chr3L:1754213-1754333 1.0000 120 chr3L:19833339-19833459 1.0000 120 chrX:17726136-17726256 1.0000 120 chr3R:21824540-21824660 1.0000 120 chr3L:10534058-10534178 1.0000 120 chr3R:28914212-28914332 1.0000 120 chr3R:21943995-21944115 1.0000 120 chrX:17875097-17875217 1.0000 120 chr3L:22351739-22351859 1.0000 120 chr2R:19697490-19697610 1.0000 120 chr2R:7370401-7370521 1.0000 120 chr2L:16602509-16602629 1.0000 120 chr2R:24131363-24131483 1.0000 120 chrX:7973451-7973571 1.0000 120 chr3L:8781676-8781796 1.0000 120 chr3R:26543631-26543751 1.0000 120 chr3R:27603712-27603832 1.0000 120 chrX:8159085-8159205 1.0000 120 chr3L:21893939-21894059 1.0000 120 chr3R:4214920-4215040 1.0000 120 chr2R:16131881-16132001 1.0000 120 chr2L:13122727-13122847 1.0000 120 chr3L:16854386-16854506 1.0000 120 chrX:15620538-15620658 1.0000 120 chr2R:24980667-24980787 1.0000 120 chr3R:5622178-5622298 1.0000 120 chr2R:16154092-16154212 1.0000 120 chr3R:25556121-25556241 1.0000 120 chr3R:13716245-13716365 1.0000 120 chr3L:12628254-12628374 1.0000 120 chr3R:30005471-30005591 1.0000 120 chr2R:9960510-9960630 1.0000 120 chrX:17488573-17488693 1.0000 120 chr3R:30357195-30357315 1.0000 120 chrX:5768988-5769108 1.0000 120 chr2R:15700460-15700580 1.0000 120 chr2R:10553082-10553202 1.0000 120 chr3R:31347026-31347146 1.0000 120 chr2L:19565722-19565842 1.0000 120 chrX:10773713-10773833 1.0000 120 chr2R:16821722-16821842 1.0000 120 chr3R:21948779-21948899 1.0000 120 chrX:19165412-19165532 1.0000 120 chr3R:14653458-14653578 1.0000 120 chrX:13879586-13879706 1.0000 120 chr3R:21896238-21896358 1.0000 120 chr3R:28531834-28531954 1.0000 120 chr2R:17266126-17266246 1.0000 120 chr3R:13989076-13989196 1.0000 120 chr2R:23730928-23731048 1.0000 120 chrX:15080072-15080192 1.0000 120 chr2L:5292158-5292278 1.0000 120 chr2L:19359946-19360066 1.0000 120 chr3L:1866507-1866627 1.0000 120 chrX:1319075-1319195 1.0000 120 chr3L:11323631-11323751 1.0000 120 chr2L:4886028-4886148 1.0000 120 chr3L:4252110-4252230 1.0000 120 chr2L:19393792-19393912 1.0000 120 chr2R:21136203-21136323 1.0000 120 chrX:3175269-3175389 1.0000 120 chr3L:19057539-19057659 1.0000 120 chrX:10893139-10893259 1.0000 120 chr3L:9462920-9463040 1.0000 120 chr2L:168410-168530 1.0000 120 chr3R:24117091-24117211 1.0000 120 chr3L:6382921-6383041 1.0000 120 chr3L:5141469-5141589 1.0000 120 chr3L:7135003-7135123 1.0000 120 chr2R:18432713-18432833 1.0000 120 chr2R:18924874-18924994 1.0000 120 chr3R:18146813-18146933 1.0000 120 chr3L:17993926-17994046 1.0000 120 chrX:2880796-2880916 1.0000 120 chrX:16762215-16762335 1.0000 120 chrX:11123657-11123777 1.0000 120 chr2R:11180837-11180957 1.0000 120 chr3R:16289026-16289146 1.0000 120 chr3L:14529879-14529999 1.0000 120 chr3L:17631392-17631512 1.0000 120 chr2L:1951539-1951659 1.0000 120 chrX:5051200-5051320 1.0000 120 chr2L:9707212-9707332 1.0000 120 chr2L:2802665-2802785 1.0000 120 chr3R:21592090-21592210 1.0000 120 chr3L:21899585-21899705 1.0000 120 chr3L:18889418-18889538 1.0000 120 chr2R:23230038-23230158 1.0000 120 chr3L:10964164-10964284 1.0000 120 chr3R:30014038-30014158 1.0000 120 chr2R:6148130-6148250 1.0000 120 chr2R:7585764-7585884 1.0000 120 chrX:4540419-4540539 1.0000 120 chr2L:3299948-3300068 1.0000 120 chrX:6631994-6632114 1.0000 120 chrX:3161930-3162050 1.0000 120 chr3R:16340734-16340854 1.0000 120 chr2R:19157634-19157754 1.0000 120 chr3R:24935871-24935991 1.0000 120 chr2L:4375207-4375327 1.0000 120 chr3R:19317477-19317597 1.0000 120 chr3L:16153304-16153424 1.0000 120 chrX:8176396-8176516 1.0000 120 chr3R:30285096-30285216 1.0000 120 chr3L:8360413-8360533 1.0000 120 chr3L:3060199-3060319 1.0000 120 chr2R:7764298-7764418 1.0000 120 chr2R:20580844-20580964 1.0000 120 chr3L:9863777-9863897 1.0000 120 chr3R:23319101-23319221 1.0000 120 chr2R:21061452-21061572 1.0000 120 chr2L:19144257-19144377 1.0000 120 chr2R:6991955-6992075 1.0000 120 chr2R:21618935-21619055 1.0000 120 chr3R:8890594-8890714 1.0000 120 chr3R:9389127-9389247 1.0000 120 chr3L:9847088-9847208 1.0000 120 chr3R:26464541-26464661 1.0000 120 chr2L:8418255-8418375 1.0000 120 chrX:3964954-3965074 1.0000 120 chrX:9077717-9077837 1.0000 120 chrX:18835639-18835759 1.0000 120 chrX:7735442-7735562 1.0000 120 chr2R:9714258-9714378 1.0000 120 chr3R:21646498-21646618 1.0000 120 chr3R:25493921-25494041 1.0000 120 chr3L:16214925-16215045 1.0000 120 chrX:6730789-6730909 1.0000 120 chr2R:22596892-22597012 1.0000 120 chr2L:16255660-16255780 1.0000 120 chr2L:7880598-7880718 1.0000 120 chr3R:8705642-8705762 1.0000 120 chr3R:9226313-9226433 1.0000 120 chr2R:9281727-9281847 1.0000 120 chr2L:11965783-11965903 1.0000 120 chr3R:21938516-21938636 1.0000 120 chr3L:5551176-5551296 1.0000 120 chr2L:2584643-2584763 1.0000 120 chrX:3866251-3866371 1.0000 120 chr3L:7433638-7433758 1.0000 120 chr2L:8002342-8002462 1.0000 120 chr2L:13035825-13035945 1.0000 120 chr3R:24319796-24319916 1.0000 120 chr2R:17439601-17439721 1.0000 120 chr2L:10794127-10794247 1.0000 120 chrX:18866403-18866523 1.0000 120 chr2R:15237724-15237844 1.0000 120 chrX:13644752-13644872 1.0000 120 chr3L:1381088-1381208 1.0000 120 chr2L:2806346-2806466 1.0000 120 chr3R:12449987-12450107 1.0000 120 chr3R:10115102-10115222 1.0000 120 chrX:6708240-6708360 1.0000 120 chr2L:11032769-11032889 1.0000 120 chr2R:12876974-12877094 1.0000 120 chrX:10932398-10932518 1.0000 120 chr3R:30289498-30289618 1.0000 120 chrX:5988229-5988349 1.0000 120 chr2R:11189295-11189415 1.0000 120 chr2L:16448156-16448276 1.0000 120 chr2L:16536647-16536767 1.0000 120 chr3L:20317096-20317216 1.0000 120 chrX:13949091-13949211 1.0000 120 chr2L:20812657-20812777 1.0000 120 chr3R:6726172-6726292 1.0000 120 chr2L:1886921-1887041 1.0000 120 chr3R:8922711-8922831 1.0000 120 chr2R:18567314-18567434 1.0000 120 chr2L:7466425-7466545 1.0000 120 chr2L:131464-131584 1.0000 120 chr2L:16511465-16511585 1.0000 120 chr3L:19234526-19234646 1.0000 120 chr3L:20387940-20388060 1.0000 120 chr2L:12527746-12527866 1.0000 120 chr2R:18879228-18879348 1.0000 120 chr3R:20556841-20556961 1.0000 120 chr3L:16803419-16803539 1.0000 120 chr3R:16232708-16232828 1.0000 120 chr2R:22586965-22587085 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_gl/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/gl.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.224 G 0.227 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.224 G 0.227 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 73 llr = 633 E-value = 1.1e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C ::2::::: probability G :::21::: matrix T aa879aaa bits 2.2 1.9 * *** 1.7 ** *** 1.5 ** *** Relative 1.3 *** **** Entropy 1.1 *** **** (12.5 bits) 0.9 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20812657-20812777 63 2.66e-05 tatttattta tttttttT GTAATAACAA chr3R:30289498-30289618 46 2.66e-05 GTTGTCTCGT TTTTTTTT TACTTGCACT chr2L:11032769-11032889 63 2.66e-05 CTTACAACTT TTTTTTTT GTTGCTCTTT chrX:3866251-3866371 2 2.66e-05 T tttttttt tgatttggct chr3R:9226313-9226433 113 2.66e-05 tttccttttc tttttttt chrX:6730789-6730909 47 2.66e-05 TGCCTTGCTA TTTTTTTT AGTTTTTGTT chr2R:20580844-20580964 96 2.66e-05 aatatcttat tttttttt gttttGGCGT chr3L:16153304-16153424 15 2.66e-05 tttttagttt tttttttt GCTTGCAGCT chrX:6631994-6632114 94 2.66e-05 tggtttgctt tttttttt ttgtgtgtct chr3R:18146813-18146933 28 2.66e-05 tttttcccat tttttttt cttCGCCCAG chr3L:7135003-7135123 71 2.66e-05 AGTCTGTTGA TTTTTTTT TTTTGGATTT chrX:10893139-10893259 4 2.66e-05 CCT TTTTTTTT TGCTCACGCT chr3R:21896238-21896358 46 2.66e-05 TTCTGTTGTG TTTTTTTT GCTGTTTATT chrX:19165412-19165532 65 2.66e-05 CTGTTGCTTC TTTTTTTT GCAGACTTTG chrX:5768988-5769108 14 2.66e-05 tttcgtttcg tttttttt cttgtagttt chr3R:30005471-30005591 65 2.66e-05 ctttttcatt tttttttt CGTTGCATTT chr3R:26543631-26543751 63 2.66e-05 TTTTGTATTC TTTTTTTT Ggcctgcccg chrX:7973451-7973571 20 2.66e-05 TGTTTATTGG TTTTTTTT TTACTTTTTG chr3L:10534058-10534178 34 2.66e-05 TGTGTGTGCT TTTTTTTT AGCGCTTTTA chr3R:28913184-28913304 45 2.66e-05 TTGCGTGCCT TTTTTTTT TACTTTCGTC chr3R:22326732-22326852 72 2.66e-05 AATTTTGCAC TTTTTTTT CTTATTTTTG chr3R:10592978-10593098 15 2.66e-05 TTTGCATCTT TTTTTTTT GCATTTTTAC chr2R:10601984-10602104 63 2.66e-05 TCTGCTGATT TTTTTTTT TGTACCAGAG chr3R:10539575-10539695 34 2.66e-05 ATTCTGTTCT TTTTTTTT ATCCGGCCCG chr2L:14665333-14665453 51 2.66e-05 GCTGTTTTGT TTTTTTTT TCTTACTTTT chrX:13116589-13116709 45 2.66e-05 tttttttctg tttttttt ctgttttttt chr3R:24004145-24004265 1 2.66e-05 . tttttttt GTGCTACGGC chr3L:6447858-6447978 50 2.66e-05 CTTGTTTTGT TTTTTTTT CGCCGCAAAA chr2R:18879228-18879348 1 7.14e-05 . TTTGTTTT ATGATTTTCA chr2L:7466425-7466545 68 7.14e-05 CTCGTTTTGG TTTGTTTT GGCTTTTTGG chr2L:16448156-16448276 41 7.14e-05 GCCAGTTTAT TTCTTTTT CAAAAATAAA chrX:6708240-6708360 47 7.14e-05 TTTTTTTCTC TTCTTTTT CTTTTTTGGG chr2L:13035825-13035945 37 7.14e-05 CAGAAAGATT TTCTTTTT TTCAAAAGAA chr3R:8705642-8705762 26 7.14e-05 ACGTTTTTAT TTTGTTTT CCTTGCTTCC chr3L:16214925-16215045 4 7.14e-05 GCT TTTGTTTT GTACCAGTCT chrX:3964954-3965074 93 7.14e-05 TTTCTTGTTG TTCTTTTT ATTTTATGGA chr3L:9847088-9847208 64 7.14e-05 GACATACGTT TTCTTTTT CCTACATACG chr2L:19144257-19144377 98 7.14e-05 CCTCACCACC ttcttttt atatttattt chr2L:4375207-4375327 75 7.14e-05 TTGGCCATGT TTTGTTTT CATTTTTTtc chr3R:30014038-30014158 41 7.14e-05 GACCTTTCTC TTCTTTTT GCCCGGGGTA chrX:11123657-11123777 66 7.14e-05 TTCTTCCTTC TTCTTTTT GTTGACAAAT chr2L:168410-168530 87 7.14e-05 TTGTTCGCTC TTTGTTTT GCAAATTCTG chrX:13879586-13879706 51 7.14e-05 TGCGTTGATt tttgtttt tgttttgctt chr3R:13716245-13716365 19 7.14e-05 tttccctcgc tttgtttt ctttcgtttc chr3R:25556121-25556241 61 7.14e-05 TTCCATTTCA TTCTTTTT GTGCCTGGCC chr3R:28914212-28914332 62 7.14e-05 TTTCGCTTTG TTCTTTTT ATTTCTTTCC chrX:17726136-17726256 11 7.14e-05 tttcgactat tttgtttt gtttttgctt chr3R:27069341-27069461 67 7.14e-05 GTGCGTTTTT TTCTTTTT ATGGGCTTTG chr3R:17019287-17019407 34 7.14e-05 GGCTTGTGGT TTTGTTTT TCGATTTTAG chrX:19485190-19485310 20 7.14e-05 GCTCGGCGCT TTTGTTTT GGTTTTGgtt chr3L:8421926-8422046 44 7.14e-05 ATTTCATTTC TTCTTTTT TATTGTTCTC chr2R:22586965-22587085 46 9.93e-05 TTTATATTTT TTTATTTT TCGCATGGGC chrX:13949091-13949211 98 9.93e-05 TGCttcgttc tttatttt cattttattt chrX:18866403-18866523 17 9.93e-05 GCCAACGTTT TTTATTTT CATTCGTTTA chr3R:21938516-21938636 95 9.93e-05 tCATTTACTT TTTATTTT CGTACAGTCA chr2L:3299948-3300068 81 9.93e-05 ACTACACTTT TTTATTTT CTGCGTGTGC chrX:2880796-2880916 30 9.93e-05 ATAACAATGA TTTATTTT CATCAGTTCA chrX:15620538-15620658 97 9.93e-05 AATGACTatt tttatttt tggttttagt chr3L:8781676-8781796 42 9.93e-05 Atttttcttc tttatttt tccgttgttt chr2R:7370401-7370521 25 9.93e-05 CAGGTGTGTT TTTATTTT ACCTTTTTCG chr2R:21496717-21496837 77 9.93e-05 GCGATATTTT TTTATTTT TATTTTCATG chr2L:16255660-16255780 49 1.41e-04 CTTTTCTTTC TTTTGTTT GTATTGCCGT chrX:8176396-8176516 49 1.41e-04 tttaacttgc ttttgttt CGCTGTGTGT chrX:5051200-5051320 68 1.41e-04 aagaaCTTCA TTTTGTTT GGTTTTGCAG chr3R:20547886-20548006 49 1.64e-04 GCCAGCCGCG TTCATTTT ATATTTTTCT chr3L:19234526-19234646 92 1.86e-04 TGTGCTCTCT TTTCTTTT GCAGCTGTGT chr3R:18375080-18375200 17 1.86e-04 tttcattcca tttcTTTT GCCTTCGCCG chr3L:8360413-8360533 14 2.08e-04 TCTCTTCACA CTTTTTTT ATCCGTATCT chr3R:21948779-21948899 5 2.08e-04 TTCG CTTTTTTT CCAACGTCTA chrX:17875097-17875217 40 2.36e-04 ttgtcgtctg ttTTATTT ATACGGAACC chr3L:14059699-14059819 27 2.36e-04 ttatgcactc ttttattt acttatttat chr3R:16340734-16340854 78 2.74e-04 TGTGGTAATA TTTGGTTT ACCTGTCGCG chr2R:10601223-10601343 25 2.74e-04 GTAGTTCTGT TTCTGTTT CTGTTTAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20812657-20812777 2.7e-05 62_[+1]_50 chr3R:30289498-30289618 2.7e-05 45_[+1]_67 chr2L:11032769-11032889 2.7e-05 62_[+1]_50 chrX:3866251-3866371 2.7e-05 1_[+1]_111 chr3R:9226313-9226433 2.7e-05 112_[+1] chrX:6730789-6730909 2.7e-05 46_[+1]_66 chr2R:20580844-20580964 2.7e-05 95_[+1]_17 chr3L:16153304-16153424 2.7e-05 14_[+1]_98 chrX:6631994-6632114 2.7e-05 93_[+1]_19 chr3R:18146813-18146933 2.7e-05 27_[+1]_85 chr3L:7135003-7135123 2.7e-05 70_[+1]_42 chrX:10893139-10893259 2.7e-05 3_[+1]_109 chr3R:21896238-21896358 2.7e-05 45_[+1]_67 chrX:19165412-19165532 2.7e-05 64_[+1]_48 chrX:5768988-5769108 2.7e-05 13_[+1]_99 chr3R:30005471-30005591 2.7e-05 64_[+1]_48 chr3R:26543631-26543751 2.7e-05 62_[+1]_50 chrX:7973451-7973571 2.7e-05 19_[+1]_93 chr3L:10534058-10534178 2.7e-05 33_[+1]_79 chr3R:28913184-28913304 2.7e-05 44_[+1]_68 chr3R:22326732-22326852 2.7e-05 71_[+1]_41 chr3R:10592978-10593098 2.7e-05 14_[+1]_98 chr2R:10601984-10602104 2.7e-05 62_[+1]_50 chr3R:10539575-10539695 2.7e-05 33_[+1]_79 chr2L:14665333-14665453 2.7e-05 50_[+1]_62 chrX:13116589-13116709 2.7e-05 44_[+1]_68 chr3R:24004145-24004265 2.7e-05 [+1]_112 chr3L:6447858-6447978 2.7e-05 49_[+1]_63 chr2R:18879228-18879348 7.1e-05 [+1]_112 chr2L:7466425-7466545 7.1e-05 67_[+1]_45 chr2L:16448156-16448276 7.1e-05 40_[+1]_72 chrX:6708240-6708360 7.1e-05 46_[+1]_66 chr2L:13035825-13035945 7.1e-05 36_[+1]_76 chr3R:8705642-8705762 7.1e-05 25_[+1]_87 chr3L:16214925-16215045 7.1e-05 3_[+1]_109 chrX:3964954-3965074 7.1e-05 92_[+1]_20 chr3L:9847088-9847208 7.1e-05 63_[+1]_49 chr2L:19144257-19144377 7.1e-05 97_[+1]_15 chr2L:4375207-4375327 7.1e-05 74_[+1]_38 chr3R:30014038-30014158 7.1e-05 40_[+1]_72 chrX:11123657-11123777 7.1e-05 65_[+1]_47 chr2L:168410-168530 7.1e-05 86_[+1]_26 chrX:13879586-13879706 7.1e-05 50_[+1]_62 chr3R:13716245-13716365 7.1e-05 18_[+1]_94 chr3R:25556121-25556241 7.1e-05 60_[+1]_52 chr3R:28914212-28914332 7.1e-05 61_[+1]_51 chrX:17726136-17726256 7.1e-05 10_[+1]_102 chr3R:27069341-27069461 7.1e-05 66_[+1]_46 chr3R:17019287-17019407 7.1e-05 33_[+1]_79 chrX:19485190-19485310 7.1e-05 19_[+1]_93 chr3L:8421926-8422046 7.1e-05 43_[+1]_69 chr2R:22586965-22587085 9.9e-05 45_[+1]_67 chrX:13949091-13949211 9.9e-05 97_[+1]_15 chrX:18866403-18866523 9.9e-05 16_[+1]_96 chr3R:21938516-21938636 9.9e-05 94_[+1]_18 chr2L:3299948-3300068 9.9e-05 80_[+1]_32 chrX:2880796-2880916 9.9e-05 29_[+1]_83 chrX:15620538-15620658 9.9e-05 96_[+1]_16 chr3L:8781676-8781796 9.9e-05 41_[+1]_71 chr2R:7370401-7370521 9.9e-05 24_[+1]_88 chr2R:21496717-21496837 9.9e-05 76_[+1]_36 chr2L:16255660-16255780 0.00014 48_[+1]_64 chrX:8176396-8176516 0.00014 48_[+1]_64 chrX:5051200-5051320 0.00014 67_[+1]_45 chr3R:20547886-20548006 0.00016 48_[+1]_64 chr3L:19234526-19234646 0.00019 91_[+1]_21 chr3R:18375080-18375200 0.00019 16_[+1]_96 chr3L:8360413-8360533 0.00021 13_[+1]_99 chr3R:21948779-21948899 0.00021 4_[+1]_108 chrX:17875097-17875217 0.00024 39_[+1]_73 chr3L:14059699-14059819 0.00024 26_[+1]_86 chr3R:16340734-16340854 0.00027 77_[+1]_35 chr2R:10601223-10601343 0.00027 24_[+1]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=73 chr2L:20812657-20812777 ( 63) TTTTTTTT 1 chr3R:30289498-30289618 ( 46) TTTTTTTT 1 chr2L:11032769-11032889 ( 63) TTTTTTTT 1 chrX:3866251-3866371 ( 2) TTTTTTTT 1 chr3R:9226313-9226433 ( 113) TTTTTTTT 1 chrX:6730789-6730909 ( 47) TTTTTTTT 1 chr2R:20580844-20580964 ( 96) TTTTTTTT 1 chr3L:16153304-16153424 ( 15) TTTTTTTT 1 chrX:6631994-6632114 ( 94) TTTTTTTT 1 chr3R:18146813-18146933 ( 28) TTTTTTTT 1 chr3L:7135003-7135123 ( 71) TTTTTTTT 1 chrX:10893139-10893259 ( 4) TTTTTTTT 1 chr3R:21896238-21896358 ( 46) TTTTTTTT 1 chrX:19165412-19165532 ( 65) TTTTTTTT 1 chrX:5768988-5769108 ( 14) TTTTTTTT 1 chr3R:30005471-30005591 ( 65) TTTTTTTT 1 chr3R:26543631-26543751 ( 63) TTTTTTTT 1 chrX:7973451-7973571 ( 20) TTTTTTTT 1 chr3L:10534058-10534178 ( 34) TTTTTTTT 1 chr3R:28913184-28913304 ( 45) TTTTTTTT 1 chr3R:22326732-22326852 ( 72) TTTTTTTT 1 chr3R:10592978-10593098 ( 15) TTTTTTTT 1 chr2R:10601984-10602104 ( 63) TTTTTTTT 1 chr3R:10539575-10539695 ( 34) TTTTTTTT 1 chr2L:14665333-14665453 ( 51) TTTTTTTT 1 chrX:13116589-13116709 ( 45) TTTTTTTT 1 chr3R:24004145-24004265 ( 1) TTTTTTTT 1 chr3L:6447858-6447978 ( 50) TTTTTTTT 1 chr2R:18879228-18879348 ( 1) TTTGTTTT 1 chr2L:7466425-7466545 ( 68) TTTGTTTT 1 chr2L:16448156-16448276 ( 41) TTCTTTTT 1 chrX:6708240-6708360 ( 47) TTCTTTTT 1 chr2L:13035825-13035945 ( 37) TTCTTTTT 1 chr3R:8705642-8705762 ( 26) TTTGTTTT 1 chr3L:16214925-16215045 ( 4) TTTGTTTT 1 chrX:3964954-3965074 ( 93) TTCTTTTT 1 chr3L:9847088-9847208 ( 64) TTCTTTTT 1 chr2L:19144257-19144377 ( 98) TTCTTTTT 1 chr2L:4375207-4375327 ( 75) TTTGTTTT 1 chr3R:30014038-30014158 ( 41) TTCTTTTT 1 chrX:11123657-11123777 ( 66) TTCTTTTT 1 chr2L:168410-168530 ( 87) TTTGTTTT 1 chrX:13879586-13879706 ( 51) TTTGTTTT 1 chr3R:13716245-13716365 ( 19) TTTGTTTT 1 chr3R:25556121-25556241 ( 61) TTCTTTTT 1 chr3R:28914212-28914332 ( 62) TTCTTTTT 1 chrX:17726136-17726256 ( 11) TTTGTTTT 1 chr3R:27069341-27069461 ( 67) TTCTTTTT 1 chr3R:17019287-17019407 ( 34) TTTGTTTT 1 chrX:19485190-19485310 ( 20) TTTGTTTT 1 chr3L:8421926-8422046 ( 44) TTCTTTTT 1 chr2R:22586965-22587085 ( 46) TTTATTTT 1 chrX:13949091-13949211 ( 98) TTTATTTT 1 chrX:18866403-18866523 ( 17) TTTATTTT 1 chr3R:21938516-21938636 ( 95) TTTATTTT 1 chr2L:3299948-3300068 ( 81) TTTATTTT 1 chrX:2880796-2880916 ( 30) TTTATTTT 1 chrX:15620538-15620658 ( 97) TTTATTTT 1 chr3L:8781676-8781796 ( 42) TTTATTTT 1 chr2R:7370401-7370521 ( 25) TTTATTTT 1 chr2R:21496717-21496837 ( 77) TTTATTTT 1 chr2L:16255660-16255780 ( 49) TTTTGTTT 1 chrX:8176396-8176516 ( 49) TTTTGTTT 1 chrX:5051200-5051320 ( 68) TTTTGTTT 1 chr3R:20547886-20548006 ( 49) TTCATTTT 1 chr3L:19234526-19234646 ( 92) TTTCTTTT 1 chr3R:18375080-18375200 ( 17) TTTCTTTT 1 chr3L:8360413-8360533 ( 14) CTTTTTTT 1 chr3R:21948779-21948899 ( 5) CTTTTTTT 1 chrX:17875097-17875217 ( 40) TTTTATTT 1 chr3L:14059699-14059819 ( 27) TTTTATTT 1 chr3R:16340734-16340854 ( 78) TTTGGTTT 1 chr2R:10601223-10601343 ( 25) TTCTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 1.1e-041 -1283 -303 -1283 186 -1283 -1283 -1283 190 -1283 -22 -1283 159 -90 -303 -47 130 -336 -1283 -173 176 -1283 -1283 -1283 190 -1283 -1283 -1283 190 -1283 -1283 -1283 190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.1e-041 0.000000 0.027397 0.000000 0.972603 0.000000 0.000000 0.000000 1.000000 0.000000 0.191781 0.000000 0.808219 0.150685 0.027397 0.164384 0.657534 0.027397 0.000000 0.068493 0.904110 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTTTTTT -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 94 llr = 732 E-value = 4.3e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa8976aa pos.-specific C ::2::3:: probability G ::::21:: matrix T :::1:::: bits 2.2 1.9 1.7 ** ** 1.5 ** ** Relative 1.3 ** * ** Entropy 1.1 ***** ** (11.2 bits) 0.9 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18879228-18879348 87 3.89e-05 AAAAACGCGC AAAAAAAA GTTATAAGAA chr3R:8922711-8922831 5 3.89e-05 ggaa aaaaaaaa caagaaacaa chrX:10932398-10932518 21 3.89e-05 GCTATAAAAA AAAAAAAA TAAAAAATTG chr2R:15237724-15237844 69 3.89e-05 aaaaaaatgg aaaaaaaa aggaaaataa chr2L:10794127-10794247 79 3.89e-05 aacaaaaaac aaaaaaaa aagcaagaca chr2L:13035825-13035945 67 3.89e-05 ACAAACAACA AAAAAAAA CTTTtctctt chr2L:8002342-8002462 56 3.89e-05 CCAAAGTGCG AAAAAAAA GAAAACGCTG chr3L:5551176-5551296 54 3.89e-05 CACTCGACAC AAAAAAAA GACTAAAAAT chr2L:11965783-11965903 4 3.89e-05 AAA AAAAAAAA ATGAATAACA chrX:9077717-9077837 63 3.89e-05 TGTGGTCCAA AAAAAAAA ACAAAAAACC chr3R:23319101-23319221 23 3.89e-05 GTGAAAAAAT AAAAAAAA AATGGGGGGG chr2R:7764298-7764418 59 3.89e-05 CAGCAAATCG aaaaaaaa gcggcaaaca chrX:3161930-3162050 78 3.89e-05 CATGGACACA AAAAAAAA CCGACCAAGC chr2L:9707212-9707332 58 3.89e-05 CGAGATAAGC AAAAAAAA AAAAAAACAG chr2R:17266126-17266246 105 3.89e-05 CTTAAAAACA AAAAAAAA AGAGATCG chr2R:16154092-16154212 47 3.89e-05 aaaaaacaga aaaaaaaa ctaaacagaa chr2L:13122727-13122847 74 3.89e-05 ATATGAAATA AAAAAAAA GAAAAAGAAT chr2L:16602509-16602629 72 3.89e-05 agaaaatcag aaaaaaAA CATAAACAGC chr2R:19697490-19697610 38 3.89e-05 CAAGATTGCA AAAAAAAA GAACCCAGCT chr3R:26004501-26004621 54 3.89e-05 AGCCTGAACA AAAAAAAA CTAAAAAAGA chr3R:18371451-18371571 14 3.89e-05 CAGCCaaaaa aaaaaaaa aaagaaCAGC chr3R:8164990-8165110 59 3.89e-05 aatacaaaaa aaaaaaaa aaaaCATACT chr2L:11027497-11027617 104 3.89e-05 GAAAGAAAAT AAAAAAAA GGTAACAGA chr3R:22326732-22326852 11 3.89e-05 CTACAGTTAC AAAAAAAA ATGAAAAAAA chr2L:14665333-14665453 90 3.89e-05 aataaaacag aaaaaaaa aaaCAGAGAG chr3R:24004145-24004265 89 3.89e-05 CAGCCACAAC AAAAAAAA AATAAACAGC chr2L:3095545-3095665 61 3.89e-05 AAAAGGAAAA AAAAAAAA CGCAAAACAA chr2L:12543973-12544093 24 3.89e-05 TTCACAATGC AAAAAAAA TGGCAAGGGA chr3R:16232708-16232828 33 6.99e-05 CCATAAGCAG AAAAACAA AAAAATAAAC chr2L:16536647-16536767 9 6.99e-05 GCAACAAC AAAAACAA AGGGAACGCA chr3L:7433638-7433758 38 6.99e-05 AGCTGACAAT AAAAACAA AACTACGCTc chr3L:8360413-8360533 65 6.99e-05 GTGCAAAGAA AAAAACAA AACAGCGGCA chr2R:19157634-19157754 94 6.99e-05 GCAGGCTAGC aaaaacaa aaaaaggggc chr2R:11180837-11180957 38 6.99e-05 aaaataaaac aaaaacaa aaaccaagaa chrX:11123657-11123777 105 6.99e-05 AGAAGCAGCG AAAAacaa aaactact chr2L:19359946-19360066 44 6.99e-05 aacaaaaaca aaaaacaa gatacaaaat chr3L:19833339-19833459 27 6.99e-05 GAATCGAGAA AAAAACAA CAAAGGCGGC chrX:18836530-18836650 65 6.99e-05 CGACGAGAAT AAAAACAA ATAATAATGA chr3L:6447858-6447978 72 6.99e-05 GCAAAAAGCG AAAAACAA GAATGATTAT chr3R:9933519-9933639 46 6.99e-05 TGCTTATTGC AAAAACAA ACAATATGGG chr2R:22586965-22587085 90 1.01e-04 AACAAAATAA AAAAGAAA TAAACAGCGA chr3R:24319796-24319916 89 1.01e-04 AAAACATGAA AAAAGAAA TGGAATCATA chrX:5051200-5051320 27 1.01e-04 aagaaacgga aaaagaaa aagaaaagag chrX:13879586-13879706 14 1.01e-04 AGCAAAAAGT AAAAGAAA GCAAAAGTTG chr3R:21943995-21944115 91 1.01e-04 CAACAAATCG AAAAGAAA AGCAAAAGGA chr3R:30290635-30290755 61 1.01e-04 TACAACTGCG AAAAGAAA CGAAAAGAAG chr3L:10386735-10386855 29 1.01e-04 GTGCAGCaag aaaagaaa aaatacaaac chr3R:20556841-20556961 98 1.32e-04 GGAGGAAAAT AACAAAAA CCAAATGGGG chr3L:19234526-19234646 13 1.32e-04 CACAACAGAA AACAAAAA TAAAATGCAA chrX:7735442-7735562 12 1.32e-04 GGCGAGATAC AACAAAAA ATAGACAAAG chr3L:17993926-17994046 63 1.32e-04 GGGCAGCCAC AACAAAAA ACAGGCTGCG chr3L:16854386-16854506 39 1.32e-04 Taaaaaagga aacaaaaa aataacaaga chr2R:7370401-7370521 65 1.32e-04 AAGCTCTGCG AACAAAAA CACGCAGAAC chr3R:21824540-21824660 51 1.32e-04 AAAATCGGAA AACAAAAA TACTCGACTC chr3R:11859288-11859408 72 1.32e-04 gcagaatgcg aacaaaaa cagaaataga chrX:13644752-13644872 100 1.57e-04 ATAAAAGTAT AAAAGCAA CATTTTTACA chr3L:3060199-3060319 94 1.57e-04 acgcagtggc aaaagcaa aacaataaca chr2L:5292158-5292278 92 1.57e-04 TTGCAAGAAC AAAAGCAA AGAACGTTGA chrX:17488573-17488693 36 1.57e-04 caaatgcgaa aaaagcaa gaacttaata chr2R:21496717-21496837 46 1.57e-04 CTTTAGCAAC AAAAGCAA GAGCAAATGA chrX:6730789-6730909 100 1.82e-04 CGGAGACAAC AACAACAA AACGAGTTGG chr3L:7135003-7135123 2 1.82e-04 c aacaacaa tagcggcagc chrX:3175269-3175389 14 1.82e-04 aaacacagca aacaacaa aaTTATACGC chr3R:31347026-31347146 54 1.82e-04 GCAGCCGGCa aacaacaa aacagcaaaa chr2R:9960510-9960630 61 1.82e-04 CAGCAATAGC AACAACAA CGAACGCCTG chrX:15620538-15620658 43 1.82e-04 cagcgacaac aacaacaa caacaaTGAG chr2L:16448156-16448276 52 2.19e-04 TCTTTTTCAA AAATAAAA CACAGAGACT chr2L:16255660-16255780 6 2.19e-04 CGGAT AAATAAAA AGAGAGAATG chr3R:9389127-9389247 73 2.19e-04 CCAATGAAGA AAATAAAA ACCAATGACG chr2L:3299948-3300068 42 2.19e-04 GGCTCTGCTT AAATAAAA TCACCTGACC chr3R:28914212-28914332 36 2.19e-04 GGCATGTTTA AAATAAAA CGTAAATGTT chr3L:41833-41953 1 2.19e-04 . AAATAAAA ATCCGCATCC chr2L:19144257-19144377 19 2.44e-04 GAAACAAAAG AACAGAAA CAGACGCTTA chr3R:16289026-16289146 14 2.44e-04 CGTTTAGGTA AACAGAAA CTCACCTGGC chr2R:18924874-18924994 77 2.44e-04 cagcaacagc aacagaaa cagcacaaca chr3R:17019287-17019407 86 2.44e-04 AAAATACAAA AACAGAAA GACAAATCAC chr3R:8705642-8705762 67 2.75e-04 TAAGTGGGCA AAAAAGAA GAGCGCAAAA chr3R:30285096-30285216 59 2.75e-04 AAAAAATTGC AAAAAGAA GAGTGGAAAC chr2L:16590495-16590615 45 2.75e-04 CAATGAAGGT AAAAAGAA TGAAGACTGA chr3L:19079095-19079215 63 2.75e-04 AGAAAAAATG AAAAAGAA TTGAATGAAG chr3R:5038120-5038240 49 3.05e-04 CTAGATGGAG AAATACAA GCGGACAAAC chr2R:7585764-7585884 4 3.55e-04 GGA AAATGAAA ATCAAGCGAT chr2R:10553082-10553202 88 3.55e-04 TTCGCTGCAA AAATGAAA CACGTCAACA chr2R:18941639-18941759 11 3.55e-04 GAAGACCCAC aaatgaaa ctgaaattga chr3L:4252110-4252230 36 4.10e-04 TGGAACTCGA AAAAGGAA ATCACAAAAG chrX:15080072-15080192 1 4.72e-04 . AACAAGAA TGCCGGGCAC chr3L:16486195-16486315 6 4.72e-04 TGGTC AATAAAAA TCTCAGCTTA chr3L:16153304-16153424 113 4.96e-04 TGAATGAGCT AAATGCAA chrX:7573065-7573185 69 4.96e-04 ACGCGCCTGA AAATGCAA CTGAAACTGC chr3R:27069341-27069461 94 5.56e-04 GCGTATATAA AAAATAAA CAAACTGGCA chr2L:20812657-20812777 73 5.86e-04 tttttttTGT AATAACAA ATTGACAATG chrX:2880796-2880916 19 5.86e-04 ATTTGATGAA AATAACAA TGATTTATTT chr3R:18375080-18375200 68 6.69e-04 CGAGGCTTCT AAAATCAA TGAAATACTT chr3R:6726172-6726292 63 7.51e-04 CACCAAAGGG CAAAAAAA TGTGTATATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18879228-18879348 3.9e-05 86_[+2]_26 chr3R:8922711-8922831 3.9e-05 4_[+2]_108 chrX:10932398-10932518 3.9e-05 20_[+2]_92 chr2R:15237724-15237844 3.9e-05 68_[+2]_44 chr2L:10794127-10794247 3.9e-05 78_[+2]_34 chr2L:13035825-13035945 3.9e-05 66_[+2]_46 chr2L:8002342-8002462 3.9e-05 55_[+2]_57 chr3L:5551176-5551296 3.9e-05 53_[+2]_59 chr2L:11965783-11965903 3.9e-05 3_[+2]_109 chrX:9077717-9077837 3.9e-05 62_[+2]_50 chr3R:23319101-23319221 3.9e-05 22_[+2]_90 chr2R:7764298-7764418 3.9e-05 58_[+2]_54 chrX:3161930-3162050 3.9e-05 77_[+2]_35 chr2L:9707212-9707332 3.9e-05 57_[+2]_55 chr2R:17266126-17266246 3.9e-05 104_[+2]_8 chr2R:16154092-16154212 3.9e-05 46_[+2]_66 chr2L:13122727-13122847 3.9e-05 73_[+2]_39 chr2L:16602509-16602629 3.9e-05 71_[+2]_41 chr2R:19697490-19697610 3.9e-05 37_[+2]_75 chr3R:26004501-26004621 3.9e-05 53_[+2]_59 chr3R:18371451-18371571 3.9e-05 13_[+2]_99 chr3R:8164990-8165110 3.9e-05 58_[+2]_54 chr2L:11027497-11027617 3.9e-05 103_[+2]_9 chr3R:22326732-22326852 3.9e-05 10_[+2]_102 chr2L:14665333-14665453 3.9e-05 89_[+2]_23 chr3R:24004145-24004265 3.9e-05 88_[+2]_24 chr2L:3095545-3095665 3.9e-05 60_[+2]_52 chr2L:12543973-12544093 3.9e-05 23_[+2]_89 chr3R:16232708-16232828 7e-05 32_[+2]_80 chr2L:16536647-16536767 7e-05 8_[+2]_104 chr3L:7433638-7433758 7e-05 37_[+2]_75 chr3L:8360413-8360533 7e-05 64_[+2]_48 chr2R:19157634-19157754 7e-05 93_[+2]_19 chr2R:11180837-11180957 7e-05 37_[+2]_75 chrX:11123657-11123777 7e-05 104_[+2]_8 chr2L:19359946-19360066 7e-05 43_[+2]_69 chr3L:19833339-19833459 7e-05 26_[+2]_86 chrX:18836530-18836650 7e-05 64_[+2]_48 chr3L:6447858-6447978 7e-05 71_[+2]_41 chr3R:9933519-9933639 7e-05 45_[+2]_67 chr2R:22586965-22587085 0.0001 89_[+2]_23 chr3R:24319796-24319916 0.0001 88_[+2]_24 chrX:5051200-5051320 0.0001 26_[+2]_86 chrX:13879586-13879706 0.0001 13_[+2]_99 chr3R:21943995-21944115 0.0001 90_[+2]_22 chr3R:30290635-30290755 0.0001 60_[+2]_52 chr3L:10386735-10386855 0.0001 28_[+2]_84 chr3R:20556841-20556961 0.00013 97_[+2]_15 chr3L:19234526-19234646 0.00013 12_[+2]_100 chrX:7735442-7735562 0.00013 11_[+2]_101 chr3L:17993926-17994046 0.00013 62_[+2]_50 chr3L:16854386-16854506 0.00013 38_[+2]_74 chr2R:7370401-7370521 0.00013 64_[+2]_48 chr3R:21824540-21824660 0.00013 50_[+2]_62 chr3R:11859288-11859408 0.00013 71_[+2]_41 chrX:13644752-13644872 0.00016 99_[+2]_13 chr3L:3060199-3060319 0.00016 93_[+2]_19 chr2L:5292158-5292278 0.00016 91_[+2]_21 chrX:17488573-17488693 0.00016 35_[+2]_77 chr2R:21496717-21496837 0.00016 45_[+2]_67 chrX:6730789-6730909 0.00018 99_[+2]_13 chr3L:7135003-7135123 0.00018 1_[+2]_111 chrX:3175269-3175389 0.00018 13_[+2]_99 chr3R:31347026-31347146 0.00018 53_[+2]_59 chr2R:9960510-9960630 0.00018 60_[+2]_52 chrX:15620538-15620658 0.00018 42_[+2]_70 chr2L:16448156-16448276 0.00022 51_[+2]_61 chr2L:16255660-16255780 0.00022 5_[+2]_107 chr3R:9389127-9389247 0.00022 72_[+2]_40 chr2L:3299948-3300068 0.00022 41_[+2]_71 chr3R:28914212-28914332 0.00022 35_[+2]_77 chr3L:41833-41953 0.00022 [+2]_112 chr2L:19144257-19144377 0.00024 18_[+2]_94 chr3R:16289026-16289146 0.00024 13_[+2]_99 chr2R:18924874-18924994 0.00024 76_[+2]_36 chr3R:17019287-17019407 0.00024 85_[+2]_27 chr3R:8705642-8705762 0.00028 66_[+2]_46 chr3R:30285096-30285216 0.00028 58_[+2]_54 chr2L:16590495-16590615 0.00028 44_[+2]_68 chr3L:19079095-19079215 0.00028 62_[+2]_50 chr3R:5038120-5038240 0.00031 48_[+2]_64 chr2R:7585764-7585884 0.00035 3_[+2]_109 chr2R:10553082-10553202 0.00035 87_[+2]_25 chr2R:18941639-18941759 0.00035 10_[+2]_102 chr3L:4252110-4252230 0.00041 35_[+2]_77 chrX:15080072-15080192 0.00047 [+2]_112 chr3L:16486195-16486315 0.00047 5_[+2]_107 chr3L:16153304-16153424 0.0005 112_[+2] chrX:7573065-7573185 0.0005 68_[+2]_44 chr3R:27069341-27069461 0.00056 93_[+2]_19 chr2L:20812657-20812777 0.00059 72_[+2]_40 chrX:2880796-2880916 0.00059 18_[+2]_94 chr3R:18375080-18375200 0.00067 67_[+2]_45 chr3R:6726172-6726292 0.00075 62_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=94 chr2R:18879228-18879348 ( 87) AAAAAAAA 1 chr3R:8922711-8922831 ( 5) AAAAAAAA 1 chrX:10932398-10932518 ( 21) AAAAAAAA 1 chr2R:15237724-15237844 ( 69) AAAAAAAA 1 chr2L:10794127-10794247 ( 79) AAAAAAAA 1 chr2L:13035825-13035945 ( 67) AAAAAAAA 1 chr2L:8002342-8002462 ( 56) AAAAAAAA 1 chr3L:5551176-5551296 ( 54) AAAAAAAA 1 chr2L:11965783-11965903 ( 4) AAAAAAAA 1 chrX:9077717-9077837 ( 63) AAAAAAAA 1 chr3R:23319101-23319221 ( 23) AAAAAAAA 1 chr2R:7764298-7764418 ( 59) AAAAAAAA 1 chrX:3161930-3162050 ( 78) AAAAAAAA 1 chr2L:9707212-9707332 ( 58) AAAAAAAA 1 chr2R:17266126-17266246 ( 105) AAAAAAAA 1 chr2R:16154092-16154212 ( 47) AAAAAAAA 1 chr2L:13122727-13122847 ( 74) AAAAAAAA 1 chr2L:16602509-16602629 ( 72) AAAAAAAA 1 chr2R:19697490-19697610 ( 38) AAAAAAAA 1 chr3R:26004501-26004621 ( 54) AAAAAAAA 1 chr3R:18371451-18371571 ( 14) AAAAAAAA 1 chr3R:8164990-8165110 ( 59) AAAAAAAA 1 chr2L:11027497-11027617 ( 104) AAAAAAAA 1 chr3R:22326732-22326852 ( 11) AAAAAAAA 1 chr2L:14665333-14665453 ( 90) AAAAAAAA 1 chr3R:24004145-24004265 ( 89) AAAAAAAA 1 chr2L:3095545-3095665 ( 61) AAAAAAAA 1 chr2L:12543973-12544093 ( 24) AAAAAAAA 1 chr3R:16232708-16232828 ( 33) AAAAACAA 1 chr2L:16536647-16536767 ( 9) AAAAACAA 1 chr3L:7433638-7433758 ( 38) AAAAACAA 1 chr3L:8360413-8360533 ( 65) AAAAACAA 1 chr2R:19157634-19157754 ( 94) AAAAACAA 1 chr2R:11180837-11180957 ( 38) AAAAACAA 1 chrX:11123657-11123777 ( 105) AAAAACAA 1 chr2L:19359946-19360066 ( 44) AAAAACAA 1 chr3L:19833339-19833459 ( 27) AAAAACAA 1 chrX:18836530-18836650 ( 65) AAAAACAA 1 chr3L:6447858-6447978 ( 72) AAAAACAA 1 chr3R:9933519-9933639 ( 46) AAAAACAA 1 chr2R:22586965-22587085 ( 90) AAAAGAAA 1 chr3R:24319796-24319916 ( 89) AAAAGAAA 1 chrX:5051200-5051320 ( 27) AAAAGAAA 1 chrX:13879586-13879706 ( 14) AAAAGAAA 1 chr3R:21943995-21944115 ( 91) AAAAGAAA 1 chr3R:30290635-30290755 ( 61) AAAAGAAA 1 chr3L:10386735-10386855 ( 29) AAAAGAAA 1 chr3R:20556841-20556961 ( 98) AACAAAAA 1 chr3L:19234526-19234646 ( 13) AACAAAAA 1 chrX:7735442-7735562 ( 12) AACAAAAA 1 chr3L:17993926-17994046 ( 63) AACAAAAA 1 chr3L:16854386-16854506 ( 39) AACAAAAA 1 chr2R:7370401-7370521 ( 65) AACAAAAA 1 chr3R:21824540-21824660 ( 51) AACAAAAA 1 chr3R:11859288-11859408 ( 72) AACAAAAA 1 chrX:13644752-13644872 ( 100) AAAAGCAA 1 chr3L:3060199-3060319 ( 94) AAAAGCAA 1 chr2L:5292158-5292278 ( 92) AAAAGCAA 1 chrX:17488573-17488693 ( 36) AAAAGCAA 1 chr2R:21496717-21496837 ( 46) AAAAGCAA 1 chrX:6730789-6730909 ( 100) AACAACAA 1 chr3L:7135003-7135123 ( 2) AACAACAA 1 chrX:3175269-3175389 ( 14) AACAACAA 1 chr3R:31347026-31347146 ( 54) AACAACAA 1 chr2R:9960510-9960630 ( 61) AACAACAA 1 chrX:15620538-15620658 ( 43) AACAACAA 1 chr2L:16448156-16448276 ( 52) AAATAAAA 1 chr2L:16255660-16255780 ( 6) AAATAAAA 1 chr3R:9389127-9389247 ( 73) AAATAAAA 1 chr2L:3299948-3300068 ( 42) AAATAAAA 1 chr3R:28914212-28914332 ( 36) AAATAAAA 1 chr3L:41833-41953 ( 1) AAATAAAA 1 chr2L:19144257-19144377 ( 19) AACAGAAA 1 chr3R:16289026-16289146 ( 14) AACAGAAA 1 chr2R:18924874-18924994 ( 77) AACAGAAA 1 chr3R:17019287-17019407 ( 86) AACAGAAA 1 chr3R:8705642-8705762 ( 67) AAAAAGAA 1 chr3R:30285096-30285216 ( 59) AAAAAGAA 1 chr2L:16590495-16590615 ( 45) AAAAAGAA 1 chr3L:19079095-19079215 ( 63) AAAAAGAA 1 chr3R:5038120-5038240 ( 49) AAATACAA 1 chr2R:7585764-7585884 ( 4) AAATGAAA 1 chr2R:10553082-10553202 ( 88) AAATGAAA 1 chr2R:18941639-18941759 ( 11) AAATGAAA 1 chr3L:4252110-4252230 ( 36) AAAAGGAA 1 chrX:15080072-15080192 ( 1) AACAAGAA 1 chr3L:16486195-16486315 ( 6) AATAAAAA 1 chr3L:16153304-16153424 ( 113) AAATGCAA 1 chrX:7573065-7573185 ( 69) AAATGCAA 1 chr3R:27069341-27069461 ( 94) AAAATAAA 1 chr2L:20812657-20812777 ( 73) AATAACAA 1 chrX:2880796-2880916 ( 19) AATAACAA 1 chr3R:18375080-18375200 ( 68) AAAATCAA 1 chr3R:6726172-6726292 ( 63) CAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.31121 E= 4.3e-033 181 -439 -1320 -1320 183 -1320 -1320 -1320 144 -15 -1320 -307 163 -1320 -1320 -107 140 -1320 4 -365 116 46 -183 -1320 183 -1320 -1320 -1320 183 -1320 -1320 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 4.3e-033 0.989362 0.010638 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.765957 0.202128 0.000000 0.031915 0.872340 0.000000 0.000000 0.127660 0.744681 0.000000 0.234043 0.021277 0.627660 0.308511 0.063830 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AA[AC]A[AG][AC]AA -------------------------------------------------------------------------------- Time 13.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-3 width = 8 sites = 21 llr = 211 E-value = 4.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :aaa::1: pos.-specific C a:::::7a probability G ::::a:1: matrix T :::::a1: bits 2.2 * * * 1.9 * ** * 1.7 ****** * 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ****** * (14.5 bits) 0.9 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20387940-20388060 75 1.52e-05 CGTGCACTTC CAAAGTCC AATTCGGTGC chr3R:10115102-10115222 77 1.52e-05 ATTGCGAATC CAAAGTCC ATTAAGTCGA chr2L:8002342-8002462 78 1.52e-05 ACGCTGGGTG CAAAGTCC ACTATGCGGA chr2L:8418255-8418375 33 1.52e-05 ATATGAAGCT CAAAGTCC GAAGCTCAAT chr3R:26464541-26464661 48 1.52e-05 ACCGGCTGGC CAAAGTCC ACGCGGCGAA chr3R:9389127-9389247 57 1.52e-05 ATTACAAAGT CAAAGTCC AATGAAGAAA chr2R:6148130-6148250 27 1.52e-05 GGTCCGATGC CAAAGTCC GCCAgaccct chr2L:9707212-9707332 36 1.52e-05 TCCCACATTA CAAAGTCC GCTGCGAGAT chr2R:21136203-21136323 13 1.52e-05 GTACTGCGGT CAAAGTCC AGGCCACTCA chr2R:9960510-9960630 19 1.52e-05 ATTTCAGACT CAAAGTCC ACAGCGTTAT chr2L:7207811-7207931 39 1.52e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chrX:7100820-7100940 109 1.52e-05 GAACATGGCT CAAAGTCC GATT chr3L:41833-41953 65 1.52e-05 GTGAGCGGTT CAAAGTCC ACAATTTCAG chr3R:26949355-26949475 106 1.52e-05 TAAGAAGCCA CAAAGTCC TCCTATG chr2R:11189295-11189415 60 3.05e-05 CTGATGCGTT CAAAGTGC AGCCACTCGA chr2L:2584643-2584763 68 3.05e-05 GAGCGTGAAT CAAAGTGC AATTAAGCCA chr3R:21592090-21592210 11 3.05e-05 ACTACATAAG CAAAGTGC GAGGCACAAA chr3R:19317477-19317597 70 6.77e-05 ACAAAAGTAG CAAAGTTC AATACGAACA chr3R:30014038-30014158 59 6.77e-05 GCCCGGGGTA CAAAGTAC AACTTGGCTG chr3R:31719089-31719209 54 6.77e-05 TCCCAACGAC CAAAGTAC ATGCATGTGT chrX:8580930-8581050 45 6.77e-05 ATTGAATCAA CAAAGTTC GATCGAATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20387940-20388060 1.5e-05 74_[+3]_38 chr3R:10115102-10115222 1.5e-05 76_[+3]_36 chr2L:8002342-8002462 1.5e-05 77_[+3]_35 chr2L:8418255-8418375 1.5e-05 32_[+3]_80 chr3R:26464541-26464661 1.5e-05 47_[+3]_65 chr3R:9389127-9389247 1.5e-05 56_[+3]_56 chr2R:6148130-6148250 1.5e-05 26_[+3]_86 chr2L:9707212-9707332 1.5e-05 35_[+3]_77 chr2R:21136203-21136323 1.5e-05 12_[+3]_100 chr2R:9960510-9960630 1.5e-05 18_[+3]_94 chr2L:7207811-7207931 1.5e-05 38_[+3]_74 chrX:7100820-7100940 1.5e-05 108_[+3]_4 chr3L:41833-41953 1.5e-05 64_[+3]_48 chr3R:26949355-26949475 1.5e-05 105_[+3]_7 chr2R:11189295-11189415 3.1e-05 59_[+3]_53 chr2L:2584643-2584763 3.1e-05 67_[+3]_45 chr3R:21592090-21592210 3.1e-05 10_[+3]_102 chr3R:19317477-19317597 6.8e-05 69_[+3]_43 chr3R:30014038-30014158 6.8e-05 58_[+3]_54 chr3R:31719089-31719209 6.8e-05 53_[+3]_59 chrX:8580930-8581050 6.8e-05 44_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=21 chr3L:20387940-20388060 ( 75) CAAAGTCC 1 chr3R:10115102-10115222 ( 77) CAAAGTCC 1 chr2L:8002342-8002462 ( 78) CAAAGTCC 1 chr2L:8418255-8418375 ( 33) CAAAGTCC 1 chr3R:26464541-26464661 ( 48) CAAAGTCC 1 chr3R:9389127-9389247 ( 57) CAAAGTCC 1 chr2R:6148130-6148250 ( 27) CAAAGTCC 1 chr2L:9707212-9707332 ( 36) CAAAGTCC 1 chr2R:21136203-21136323 ( 13) CAAAGTCC 1 chr2R:9960510-9960630 ( 19) CAAAGTCC 1 chr2L:7207811-7207931 ( 39) CAAAGTCC 1 chrX:7100820-7100940 ( 109) CAAAGTCC 1 chr3L:41833-41953 ( 65) CAAAGTCC 1 chr3R:26949355-26949475 ( 106) CAAAGTCC 1 chr2R:11189295-11189415 ( 60) CAAAGTGC 1 chr2L:2584643-2584763 ( 68) CAAAGTGC 1 chr3R:21592090-21592210 ( 11) CAAAGTGC 1 chr3R:19317477-19317597 ( 70) CAAAGTTC 1 chr3R:30014038-30014158 ( 59) CAAAGTAC 1 chr3R:31719089-31719209 ( 54) CAAAGTAC 1 chrX:8580930-8581050 ( 45) CAAAGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 4.8e-004 -1104 216 -1104 -1104 183 -1104 -1104 -1104 183 -1104 -1104 -1104 183 -1104 -1104 -1104 -1104 -1104 214 -1104 -1104 -1104 -1104 190 -156 157 -67 -149 -1104 216 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.8e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.095238 0.666667 0.142857 0.095238 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-3 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 19.76 secs. ******************************************************************************** ******************************************************************************** MOTIF TKBDCTTT MEME-4 width = 8 sites = 89 llr = 646 E-value = 2.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::15:::: pos.-specific C ::3:7::: probability G :633:::: matrix T a4333aaa bits 2.2 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * **** Entropy 1.1 ** **** (10.5 bits) 0.9 ** **** 0.6 ** **** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel TGGACTTT consensus TTTT sequence CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20556841-20556961 70 1.67e-05 TCATTCCAAC TGGACTTT GTACCCCCTT chrX:13644752-13644872 50 1.67e-05 TCTTGTCGCT TGGACTTT GAACCGCGCC chr2R:22596892-22597012 69 1.67e-05 ACTATCGCTA TGGACTTT GGACATGGCG chr3R:25493921-25494041 78 1.67e-05 AAAGACTAAG TGGACTTT GGAACTGGTT chr2L:4886028-4886148 45 1.67e-05 TTTGCGAAAC TGGACTTT GCAAAATATT chrX:15080072-15080192 43 1.67e-05 ACTGACGGTT TGGACTTT GGACGGTTTA chr2R:23730928-23731048 72 1.67e-05 CTGGGCGGCC TGGACTTT ATACCCGCCA chr3L:12628254-12628374 74 1.67e-05 CGGTTCCTCC TGGACTTT GCACCCGGCC chr3L:12014436-12014556 49 1.67e-05 GGACGAGCTT TGGACTTT GGAGCCAGCC chr3R:5737514-5737634 6 1.67e-05 GCACG TGGACTTT GACGAGATGC chr2R:11214031-11214151 64 1.67e-05 GATGTAGATA TGGACTTT GACCAGCAGT chr3R:10539575-10539695 1 1.67e-05 . TGGACTTT ATATTTTTTT chr3L:17993926-17994046 39 3.32e-05 TGCAGATCGT TGCACTTT TGCATCGGGC chr2L:19565722-19565842 30 3.32e-05 CGGTTTTGGC TGCACTTT GATAGCTTCC chr2R:24980667-24980787 55 3.32e-05 CGCTAAACTT TGCACTTT GAGTTCGCTC chrX:17875097-17875217 96 3.32e-05 TTGGTGTTTT TGCACTTT TTTGCTGCAC chr2R:24553611-24553731 62 3.32e-05 CGCAAGCTGT TGCACTTT GCACTGAAAC chrX:5988229-5988349 57 5.30e-05 GAGCAGCTGG TGTACTTT GCATCTACAC chr2L:2806346-2806466 57 5.30e-05 ATCAAGCGGC TGTACTTT GCACCTCCAA chr3L:9863777-9863897 80 5.30e-05 ATGCTGAATG TGTACTTT GAACTGGGCC chrX:16762215-16762335 91 5.30e-05 TCGATTGTTT TGTACTTT GATTTACCCC chr3R:27069341-27069461 76 6.65e-05 TTTCTTTTTA TGGGCTTT GCGTATATAA chr2R:22586965-22587085 31 1.16e-04 TTGTGCCTTT TGCGCTTT ATATTTTTTT chrX:19165412-19165532 84 1.16e-04 CAGACTTTGT TGGTCTTT TTCGGTTTTT chr2R:10553082-10553202 43 1.16e-04 ACCTGGAAAG TGCGCTTT TGTGTGTGTG chr3R:21653558-21653678 17 1.16e-04 AAATAGCCAT TTGACTTT GAACTTTGCG chr2L:20812657-20812777 35 1.67e-04 TGTTGTACGC TGCTCttt ttcatttatt chr2L:11032769-11032889 73 1.67e-04 TTTTTTTTGT TGCTCTTT TTTGTCTCAT chr2R:20580844-20580964 61 1.67e-04 TTGGCTGGAC TGTGCttt gttttttatt chrX:13116589-13116709 30 1.67e-04 TCGTATTTTA TGTGCttt ttttctgttt chr3R:6726172-6726292 26 2.09e-04 AAACCTGACA TGTTCTTT TCGATCAGAC chr3L:10964164-10964284 77 2.09e-04 AGTGAAATTA TGTTCTTT ATATAGCCAT chrX:8580930-8581050 95 2.09e-04 AGTACACTAG TTTACTTT GCAGCTTATT chrX:3866251-3866371 14 2.25e-04 tttttttgat ttggcttt cgattttgtt chr2R:6991955-6992075 111 2.25e-04 CCCAAACTGG TTGGCTTT GG chr3R:21896238-21896358 25 2.25e-04 TTGGTTGTTT TTGGCTTT TGTTTCTGTT chrX:18866403-18866523 70 2.59e-04 TTGCGTCCCT TTGTCTTT CCCTGTGGCT chrX:3964954-3965074 60 2.59e-04 TCGGCTAGAA TTGTCTTT AGCTTTGAAT chr3L:9847088-9847208 25 2.59e-04 ACACTCACGC TTCGCTTT TTGCCTTTTT chrX:8176396-8176516 32 2.59e-04 ctttgcttcc ttcgcttt ttaacttgct chr3R:24935871-24935991 30 2.59e-04 CTTGACCTCG TTGTCTTT GTTCATTACC chrX:6631994-6632114 1 2.59e-04 . TTGTCTTT ACTTCTGCTC chr3R:21948779-21948899 62 2.59e-04 GTTAACCAAT TTCGCTTT TAGCCTTTTT chrX:7973451-7973571 63 2.59e-04 GTTGACTGGT TTCGCTTT CAACGACTCA chr2R:7370401-7370521 39 2.59e-04 TTTTACCTTT TTCGCTTT CAAACCCAAA chr3R:28914212-28914332 53 2.59e-04 ACGTAAATGT TTCGCTTT GTTCTTTTTA chr3R:24947443-24947563 60 2.59e-04 GTTGCAGGGC TTCGCTTT GGTGTCTGAT chr2L:13035825-13035945 78 2.97e-04 AAAAAAACTT Ttctcttt tttgcgctct chrX:18835639-18835759 20 2.97e-04 CACTTCTCAC TTTGCTTT TCTTCGTCTT chrX:13879586-13879706 62 2.97e-04 ttgtttttgt tttgcttt tgcttttgcc chrX:17726136-17726256 33 2.97e-04 ttgcttgccc ttctcttt gctttgttGT chr3R:20547886-20548006 1 2.97e-04 . TTTGCTTT TTGCTTTCTG chr3R:9226313-9226433 98 3.19e-04 CACTGGCttt ttttcttt ccttttcttt chr2L:16255660-16255780 40 3.19e-04 AAAGAGATTC TTTTCTTT CTTTTGTTTG chrX:5768988-5769108 84 3.19e-04 TTCGTGTTTA TTTTCTTT TTATTGCCAG chr3R:30005471-30005591 51 3.19e-04 CCTCttcttt ttttcttt ttcatttttt chr3R:13716245-13716365 3 3.19e-04 Cg ttttcttt tccctcgctt chr3R:10592978-10593098 39 3.19e-04 TTACTTATTT TTTTCTTT GCACACCCAA chrX:7735442-7735562 34 3.39e-04 ACAAAGGGAG TGGATTTT AAAAAGATGC chr3L:7135003-7135123 82 3.39e-04 TTTTTTTTTT TGGATTTT GTGTTGCTGC chr3L:10559438-10559558 19 3.39e-04 CACAATCACT TGGATTTT GAGTTGGGCA chr3R:26543631-26543751 112 3.59e-04 cctgtcttcc tgcATTTT T chr3L:16497108-16497228 57 3.59e-04 TGGTCTGGAC TGCATTTT CCGCTGGCAA chr2L:21013692-21013812 112 3.59e-04 ttgcacttAA TGCATTTT T chr3L:6447858-6447978 31 3.59e-04 AAACACTCGT TGCATTTT ACTTGTTTTG chr2R:10601223-10601343 88 3.83e-04 AAATTAACCG TGTATTTT CACAGCGCgt chrX:6730789-6730909 30 4.57e-04 TCCTCTTTTT TGCGTTTT GCCTTGCTAT chr2R:21061452-21061572 1 4.57e-04 . TTGATTTT GGAGACACAG chr3L:10930556-10930676 73 4.57e-04 GCCAGATTTG TGGTTTTT AGCCAGAGTG chr3R:16334392-16334512 113 4.57e-04 GTGTTGTTTG TGGTTTTT chr2L:131464-131584 63 5.39e-04 TTGTATATAG TGAACTTT GTACCAGGCG chr3L:1381088-1381208 69 5.39e-04 CGAATGGAAA TGAACTTT GAAGCCTGCG chr3R:21938516-21938636 17 5.39e-04 gtgtgtgtgc tgtgtttt ttattatttt chr3R:12717091-12717211 60 5.39e-04 CGTCTGTGTC TGAACTTT GAATACGGAC chr3R:27925845-27925965 52 5.39e-04 ACGACCGTCC TGAACTTT GCCCAGCGCG chrX:13949091-13949211 109 5.90e-04 ttattttcat tttatttt tgtt chr2L:19144257-19144377 113 5.90e-04 tttatattta tttatttt chr3L:8781676-8781796 62 5.90e-04 cgttgttttg tttatttt ttCACACATT chr3R:28913184-28913304 22 5.90e-04 AGATTTATAA TTTATTTT TAATTTTGCG chrX:19485190-19485310 70 5.90e-04 tttattttcc tgtttttt tgcttgtttt chr3R:30014038-30014158 17 6.67e-04 GCCACCAAGC TGAGCTTT GCATCGGACC chr3R:21592090-21592210 83 6.67e-04 AGACACAATA TTGTTTTT CCTTCATCTG chr2L:168410-168530 71 6.67e-04 CTTCGGACCT TGAGCTTT GTTCGCTCTT chr3R:30289498-30289618 63 7.56e-04 TTACTTGCAC TTCTTTTT TGTTTTAACC chr3R:8705642-8705762 46 7.56e-04 TTGCTTCCCC TTTGTTTT GTTTAAGTGG chr3L:10534058-10534178 68 7.56e-04 TAGGTTTTTC TTCTTTTT TTTTTGTATA chr3L:16153304-16153424 2 7.83e-04 c tttttttt agtttttttt chrX:10893139-10893259 27 7.83e-04 ACGCTCCACA TTTTTTTT GCAGTCTCCC chr3R:22326732-22326852 60 8.50e-04 AAGTGGTGGT TGAATTTT GCACTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20556841-20556961 1.7e-05 69_[+4]_43 chrX:13644752-13644872 1.7e-05 49_[+4]_63 chr2R:22596892-22597012 1.7e-05 68_[+4]_44 chr3R:25493921-25494041 1.7e-05 77_[+4]_35 chr2L:4886028-4886148 1.7e-05 44_[+4]_68 chrX:15080072-15080192 1.7e-05 42_[+4]_70 chr2R:23730928-23731048 1.7e-05 71_[+4]_41 chr3L:12628254-12628374 1.7e-05 73_[+4]_39 chr3L:12014436-12014556 1.7e-05 48_[+4]_64 chr3R:5737514-5737634 1.7e-05 5_[+4]_107 chr2R:11214031-11214151 1.7e-05 63_[+4]_49 chr3R:10539575-10539695 1.7e-05 [+4]_112 chr3L:17993926-17994046 3.3e-05 38_[+4]_74 chr2L:19565722-19565842 3.3e-05 29_[+4]_83 chr2R:24980667-24980787 3.3e-05 54_[+4]_58 chrX:17875097-17875217 3.3e-05 95_[+4]_17 chr2R:24553611-24553731 3.3e-05 61_[+4]_51 chrX:5988229-5988349 5.3e-05 56_[+4]_56 chr2L:2806346-2806466 5.3e-05 56_[+4]_56 chr3L:9863777-9863897 5.3e-05 79_[+4]_33 chrX:16762215-16762335 5.3e-05 90_[+4]_22 chr3R:27069341-27069461 6.7e-05 75_[+4]_37 chr2R:22586965-22587085 0.00012 30_[+4]_82 chrX:19165412-19165532 0.00012 83_[+4]_29 chr2R:10553082-10553202 0.00012 42_[+4]_70 chr3R:21653558-21653678 0.00012 16_[+4]_96 chr2L:20812657-20812777 0.00017 34_[+4]_78 chr2L:11032769-11032889 0.00017 72_[+4]_40 chr2R:20580844-20580964 0.00017 60_[+4]_52 chrX:13116589-13116709 0.00017 29_[+4]_83 chr3R:6726172-6726292 0.00021 25_[+4]_87 chr3L:10964164-10964284 0.00021 76_[+4]_36 chrX:8580930-8581050 0.00021 94_[+4]_18 chrX:3866251-3866371 0.00022 13_[+4]_99 chr2R:6991955-6992075 0.00022 110_[+4]_2 chr3R:21896238-21896358 0.00022 24_[+4]_88 chrX:18866403-18866523 0.00026 69_[+4]_43 chrX:3964954-3965074 0.00026 59_[+4]_53 chr3L:9847088-9847208 0.00026 24_[+4]_88 chrX:8176396-8176516 0.00026 31_[+4]_81 chr3R:24935871-24935991 0.00026 29_[+4]_83 chrX:6631994-6632114 0.00026 [+4]_112 chr3R:21948779-21948899 0.00026 61_[+4]_51 chrX:7973451-7973571 0.00026 62_[+4]_50 chr2R:7370401-7370521 0.00026 38_[+4]_74 chr3R:28914212-28914332 0.00026 52_[+4]_60 chr3R:24947443-24947563 0.00026 59_[+4]_53 chr2L:13035825-13035945 0.0003 77_[+4]_35 chrX:18835639-18835759 0.0003 19_[+4]_93 chrX:13879586-13879706 0.0003 61_[+4]_51 chrX:17726136-17726256 0.0003 32_[+4]_80 chr3R:20547886-20548006 0.0003 [+4]_112 chr3R:9226313-9226433 0.00032 97_[+4]_15 chr2L:16255660-16255780 0.00032 39_[+4]_73 chrX:5768988-5769108 0.00032 83_[+4]_29 chr3R:30005471-30005591 0.00032 50_[+4]_62 chr3R:13716245-13716365 0.00032 2_[+4]_110 chr3R:10592978-10593098 0.00032 38_[+4]_74 chrX:7735442-7735562 0.00034 33_[+4]_79 chr3L:7135003-7135123 0.00034 81_[+4]_31 chr3L:10559438-10559558 0.00034 18_[+4]_94 chr3R:26543631-26543751 0.00036 111_[+4]_1 chr3L:16497108-16497228 0.00036 56_[+4]_56 chr2L:21013692-21013812 0.00036 111_[+4]_1 chr3L:6447858-6447978 0.00036 30_[+4]_82 chr2R:10601223-10601343 0.00038 87_[+4]_25 chrX:6730789-6730909 0.00046 29_[+4]_83 chr2R:21061452-21061572 0.00046 [+4]_112 chr3L:10930556-10930676 0.00046 72_[+4]_40 chr3R:16334392-16334512 0.00046 112_[+4] chr2L:131464-131584 0.00054 62_[+4]_50 chr3L:1381088-1381208 0.00054 68_[+4]_44 chr3R:21938516-21938636 0.00054 16_[+4]_96 chr3R:12717091-12717211 0.00054 59_[+4]_53 chr3R:27925845-27925965 0.00054 51_[+4]_61 chrX:13949091-13949211 0.00059 108_[+4]_4 chr2L:19144257-19144377 0.00059 112_[+4] chr3L:8781676-8781796 0.00059 61_[+4]_51 chr3R:28913184-28913304 0.00059 21_[+4]_91 chrX:19485190-19485310 0.00059 69_[+4]_43 chr3R:30014038-30014158 0.00067 16_[+4]_96 chr3R:21592090-21592210 0.00067 82_[+4]_30 chr2L:168410-168530 0.00067 70_[+4]_42 chr3R:30289498-30289618 0.00076 62_[+4]_50 chr3R:8705642-8705762 0.00076 45_[+4]_67 chr3L:10534058-10534178 0.00076 67_[+4]_45 chr3L:16153304-16153424 0.00078 1_[+4]_111 chrX:10893139-10893259 0.00078 26_[+4]_86 chr3R:22326732-22326852 0.00085 59_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKBDCTTT width=8 seqs=89 chr3R:20556841-20556961 ( 70) TGGACTTT 1 chrX:13644752-13644872 ( 50) TGGACTTT 1 chr2R:22596892-22597012 ( 69) TGGACTTT 1 chr3R:25493921-25494041 ( 78) TGGACTTT 1 chr2L:4886028-4886148 ( 45) TGGACTTT 1 chrX:15080072-15080192 ( 43) TGGACTTT 1 chr2R:23730928-23731048 ( 72) TGGACTTT 1 chr3L:12628254-12628374 ( 74) TGGACTTT 1 chr3L:12014436-12014556 ( 49) TGGACTTT 1 chr3R:5737514-5737634 ( 6) TGGACTTT 1 chr2R:11214031-11214151 ( 64) TGGACTTT 1 chr3R:10539575-10539695 ( 1) TGGACTTT 1 chr3L:17993926-17994046 ( 39) TGCACTTT 1 chr2L:19565722-19565842 ( 30) TGCACTTT 1 chr2R:24980667-24980787 ( 55) TGCACTTT 1 chrX:17875097-17875217 ( 96) TGCACTTT 1 chr2R:24553611-24553731 ( 62) TGCACTTT 1 chrX:5988229-5988349 ( 57) TGTACTTT 1 chr2L:2806346-2806466 ( 57) TGTACTTT 1 chr3L:9863777-9863897 ( 80) TGTACTTT 1 chrX:16762215-16762335 ( 91) TGTACTTT 1 chr3R:27069341-27069461 ( 76) TGGGCTTT 1 chr2R:22586965-22587085 ( 31) TGCGCTTT 1 chrX:19165412-19165532 ( 84) TGGTCTTT 1 chr2R:10553082-10553202 ( 43) TGCGCTTT 1 chr3R:21653558-21653678 ( 17) TTGACTTT 1 chr2L:20812657-20812777 ( 35) TGCTCTTT 1 chr2L:11032769-11032889 ( 73) TGCTCTTT 1 chr2R:20580844-20580964 ( 61) TGTGCTTT 1 chrX:13116589-13116709 ( 30) TGTGCTTT 1 chr3R:6726172-6726292 ( 26) TGTTCTTT 1 chr3L:10964164-10964284 ( 77) TGTTCTTT 1 chrX:8580930-8581050 ( 95) TTTACTTT 1 chrX:3866251-3866371 ( 14) TTGGCTTT 1 chr2R:6991955-6992075 ( 111) TTGGCTTT 1 chr3R:21896238-21896358 ( 25) TTGGCTTT 1 chrX:18866403-18866523 ( 70) TTGTCTTT 1 chrX:3964954-3965074 ( 60) TTGTCTTT 1 chr3L:9847088-9847208 ( 25) TTCGCTTT 1 chrX:8176396-8176516 ( 32) TTCGCTTT 1 chr3R:24935871-24935991 ( 30) TTGTCTTT 1 chrX:6631994-6632114 ( 1) TTGTCTTT 1 chr3R:21948779-21948899 ( 62) TTCGCTTT 1 chrX:7973451-7973571 ( 63) TTCGCTTT 1 chr2R:7370401-7370521 ( 39) TTCGCTTT 1 chr3R:28914212-28914332 ( 53) TTCGCTTT 1 chr3R:24947443-24947563 ( 60) TTCGCTTT 1 chr2L:13035825-13035945 ( 78) TTCTCTTT 1 chrX:18835639-18835759 ( 20) TTTGCTTT 1 chrX:13879586-13879706 ( 62) TTTGCTTT 1 chrX:17726136-17726256 ( 33) TTCTCTTT 1 chr3R:20547886-20548006 ( 1) TTTGCTTT 1 chr3R:9226313-9226433 ( 98) TTTTCTTT 1 chr2L:16255660-16255780 ( 40) TTTTCTTT 1 chrX:5768988-5769108 ( 84) TTTTCTTT 1 chr3R:30005471-30005591 ( 51) TTTTCTTT 1 chr3R:13716245-13716365 ( 3) TTTTCTTT 1 chr3R:10592978-10593098 ( 39) TTTTCTTT 1 chrX:7735442-7735562 ( 34) TGGATTTT 1 chr3L:7135003-7135123 ( 82) TGGATTTT 1 chr3L:10559438-10559558 ( 19) TGGATTTT 1 chr3R:26543631-26543751 ( 112) TGCATTTT 1 chr3L:16497108-16497228 ( 57) TGCATTTT 1 chr2L:21013692-21013812 ( 112) TGCATTTT 1 chr3L:6447858-6447978 ( 31) TGCATTTT 1 chr2R:10601223-10601343 ( 88) TGTATTTT 1 chrX:6730789-6730909 ( 30) TGCGTTTT 1 chr2R:21061452-21061572 ( 1) TTGATTTT 1 chr3L:10930556-10930676 ( 73) TGGTTTTT 1 chr3R:16334392-16334512 ( 113) TGGTTTTT 1 chr2L:131464-131584 ( 63) TGAACTTT 1 chr3L:1381088-1381208 ( 69) TGAACTTT 1 chr3R:21938516-21938636 ( 17) TGTGTTTT 1 chr3R:12717091-12717211 ( 60) TGAACTTT 1 chr3R:27925845-27925965 ( 52) TGAACTTT 1 chrX:13949091-13949211 ( 109) TTTATTTT 1 chr2L:19144257-19144377 ( 113) TTTATTTT 1 chr3L:8781676-8781796 ( 62) TTTATTTT 1 chr3R:28913184-28913304 ( 22) TTTATTTT 1 chrX:19485190-19485310 ( 70) TGTTTTTT 1 chr3R:30014038-30014158 ( 17) TGAGCTTT 1 chr3R:21592090-21592210 ( 83) TTGTTTTT 1 chr2L:168410-168530 ( 71) TGAGCTTT 1 chr3R:30289498-30289618 ( 63) TTCTTTTT 1 chr3R:8705642-8705762 ( 46) TTTGTTTT 1 chr3L:10534058-10534178 ( 68) TTCTTTTT 1 chr3L:16153304-16153424 ( 2) TTTTTTTT 1 chrX:10893139-10893259 ( 27) TTTTTTTT 1 chr3R:22326732-22326852 ( 60) TGAATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.84894 E= 2.5e-009 -1312 -1312 -1312 190 -1312 -1312 134 67 -184 33 52 23 71 -1312 19 7 -1312 168 -1312 7 -1312 -1312 -1312 190 -1312 -1312 -1312 190 -1312 -1312 -1312 190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 2.5e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.573034 0.426966 0.078652 0.280899 0.325843 0.314607 0.460674 0.000000 0.258427 0.280899 0.000000 0.719101 0.000000 0.280899 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKBDCTTT MEME-4 regular expression -------------------------------------------------------------------------------- T[GT][GTC][ATG][CT]TTT -------------------------------------------------------------------------------- Time 25.74 secs. ******************************************************************************** ******************************************************************************** MOTIF SRGAAGCC MEME-5 width = 8 sites = 25 llr = 229 E-value = 9.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 24:aa::: pos.-specific C 61::::aa probability G 34a::a:: matrix T :1:::::: bits 2.2 * *** 1.9 * *** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (13.2 bits) 0.9 ****** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel CAGAAGCC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12876974-12877094 87 2.32e-05 GAACCACTGA CGGAAGCC CTACAATGCA chr2R:6991955-6992075 48 2.32e-05 TAATTAAAAA CGGAAGCC ATGCCCGAAG chr3R:13989076-13989196 51 2.32e-05 GCAAAATGGC CAGAAGCC GCACAAGTGG chr2R:15700460-15700580 95 2.32e-05 CACCTACGAT CAGAAGCC AGGCAAATGC chr2R:24131363-24131483 42 2.32e-05 GATAGGAACC CAGAAGCC TCGCGATTGC chr3L:22862774-22862894 96 2.32e-05 GCACTCGCGG CAGAAGCC CAAGCAGTGA chr3R:24004145-24004265 106 2.32e-05 AAATAAACAG CAGAAGCC ATGACAA chr2L:3095545-3095665 99 2.32e-05 AAACCAGCGC CAGAAGCC ATAAATGGCT chr3R:26949355-26949475 50 2.32e-05 GTGTCAGCCG CAGAAGCC TTGGGAAATA chr2L:604727-604847 30 2.32e-05 GGAGCAACCA CAGAAGCC ACAGAAGTTG chr3L:20387940-20388060 111 4.68e-05 TGCCAATGCG GGGAAGCC TT chr3L:19057539-19057659 63 4.68e-05 ATGCGCTCGG GGGAAGCC CCAGTGACGG chr2L:19359946-19360066 78 4.68e-05 aaaagaaTGA GAGAAGCC AGCGAGATAC chr3L:19079095-19079215 80 4.68e-05 ATTGAATGAA GGGAAGCC CGACTCCTGC chr3L:6344754-6344874 80 4.68e-05 GATGGCCTCT GAGAAGCC CCCCTTTAAC chr3R:22322203-22322323 68 4.68e-05 TGCGGTGGCC GGGAAGCC TTACAAAGGG chr3L:1754213-1754333 39 5.70e-05 CTGGCGGCCA CCGAAGCC CACAAGCTGC chr3R:12288349-12288469 19 5.70e-05 ACGTTTAAGA CCGAAGCC GTagaagaga chr2L:2806346-2806466 33 8.62e-05 TCGCTTAGTC AAGAAGCC ATCTCCATCA chr2R:7370401-7370521 93 8.62e-05 GAAACCGGTT AGGAAGCC GACTTTAaag chr2L:12480953-12481073 21 8.62e-05 GCCTTATTGT AGGAAGCC TTAAAGTGCC chr2R:18941639-18941759 89 8.62e-05 AGTTACTGCC AGGAAGCC ACACAAAAAC chr2L:19393792-19393912 39 9.84e-05 GTGCAAACGA CTGAAGCC GTAGAAAGGA chr3R:27603712-27603832 43 9.84e-05 TGTGTCCGAA CTGAAGCC GTTCAACTGT chr3R:14653458-14653578 47 1.09e-04 CAGCCAGCCA GCGAAGCC AAACGAACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12876974-12877094 2.3e-05 86_[+5]_26 chr2R:6991955-6992075 2.3e-05 47_[+5]_65 chr3R:13989076-13989196 2.3e-05 50_[+5]_62 chr2R:15700460-15700580 2.3e-05 94_[+5]_18 chr2R:24131363-24131483 2.3e-05 41_[+5]_71 chr3L:22862774-22862894 2.3e-05 95_[+5]_17 chr3R:24004145-24004265 2.3e-05 105_[+5]_7 chr2L:3095545-3095665 2.3e-05 98_[+5]_14 chr3R:26949355-26949475 2.3e-05 49_[+5]_63 chr2L:604727-604847 2.3e-05 29_[+5]_83 chr3L:20387940-20388060 4.7e-05 110_[+5]_2 chr3L:19057539-19057659 4.7e-05 62_[+5]_50 chr2L:19359946-19360066 4.7e-05 77_[+5]_35 chr3L:19079095-19079215 4.7e-05 79_[+5]_33 chr3L:6344754-6344874 4.7e-05 79_[+5]_33 chr3R:22322203-22322323 4.7e-05 67_[+5]_45 chr3L:1754213-1754333 5.7e-05 38_[+5]_74 chr3R:12288349-12288469 5.7e-05 18_[+5]_94 chr2L:2806346-2806466 8.6e-05 32_[+5]_80 chr2R:7370401-7370521 8.6e-05 92_[+5]_20 chr2L:12480953-12481073 8.6e-05 20_[+5]_92 chr2R:18941639-18941759 8.6e-05 88_[+5]_24 chr2L:19393792-19393912 9.8e-05 38_[+5]_74 chr3R:27603712-27603832 9.8e-05 42_[+5]_70 chr3R:14653458-14653578 0.00011 46_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SRGAAGCC width=8 seqs=25 chr2R:12876974-12877094 ( 87) CGGAAGCC 1 chr2R:6991955-6992075 ( 48) CGGAAGCC 1 chr3R:13989076-13989196 ( 51) CAGAAGCC 1 chr2R:15700460-15700580 ( 95) CAGAAGCC 1 chr2R:24131363-24131483 ( 42) CAGAAGCC 1 chr3L:22862774-22862894 ( 96) CAGAAGCC 1 chr3R:24004145-24004265 ( 106) CAGAAGCC 1 chr2L:3095545-3095665 ( 99) CAGAAGCC 1 chr3R:26949355-26949475 ( 50) CAGAAGCC 1 chr2L:604727-604847 ( 30) CAGAAGCC 1 chr3L:20387940-20388060 ( 111) GGGAAGCC 1 chr3L:19057539-19057659 ( 63) GGGAAGCC 1 chr2L:19359946-19360066 ( 78) GAGAAGCC 1 chr3L:19079095-19079215 ( 80) GGGAAGCC 1 chr3L:6344754-6344874 ( 80) GAGAAGCC 1 chr3R:22322203-22322323 ( 68) GGGAAGCC 1 chr3L:1754213-1754333 ( 39) CCGAAGCC 1 chr3R:12288349-12288469 ( 19) CCGAAGCC 1 chr2L:2806346-2806466 ( 33) AAGAAGCC 1 chr2R:7370401-7370521 ( 93) AGGAAGCC 1 chr2L:12480953-12481073 ( 21) AGGAAGCC 1 chr2R:18941639-18941759 ( 89) AGGAAGCC 1 chr2L:19393792-19393912 ( 39) CTGAAGCC 1 chr3R:27603712-27603832 ( 43) CTGAAGCC 1 chr3R:14653458-14653578 ( 47) GCGAAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 9.9e+000 -81 132 30 -1129 64 -90 67 -174 -1129 -1129 214 -1129 183 -1129 -1129 -1129 183 -1129 -1129 -1129 -1129 -1129 214 -1129 -1129 216 -1129 -1129 -1129 216 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 9.9e+000 0.160000 0.560000 0.280000 0.000000 0.440000 0.120000 0.360000 0.080000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRGAAGCC MEME-5 regular expression -------------------------------------------------------------------------------- [CG][AG]GAAGCC -------------------------------------------------------------------------------- Time 31.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:604727-604847 1.17e-01 29_[+5(2.32e-05)]_68_[+5(4.68e-05)]_\ 7 chr2R:7425143-7425263 4.33e-01 120 chr2R:18941639-18941759 5.69e-02 88_[+5(8.62e-05)]_24 chr2L:12480953-12481073 2.85e-02 20_[+5(8.62e-05)]_92 chr3R:18375080-18375200 1.34e-01 120 chr3R:9933519-9933639 5.88e-02 45_[+2(6.99e-05)]_67 chr2R:13481169-13481289 2.09e-01 120 chr3L:10386735-10386855 1.48e-01 120 chr3R:22322203-22322323 2.61e-02 67_[+5(4.68e-05)]_45 chr2R:24553611-24553731 4.30e-02 61_[+4(3.32e-05)]_51 chr3L:6447858-6447978 8.75e-04 14_[+2(6.99e-05)]_26_[+1(2.66e-05)]_\ 15_[+2(6.99e-05)]_41 chr3R:23785045-23785165 8.86e-01 120 chr2L:21013692-21013812 4.81e-01 120 chr3R:26949355-26949475 1.98e-03 49_[+5(2.32e-05)]_39_[+5(8.62e-05)]_\ 1_[+3(1.52e-05)]_7 chr2R:15053156-15053276 6.04e-01 120 chr3L:11033313-11033433 7.35e-01 120 chr3R:24947443-24947563 2.53e-01 120 chr3R:11859288-11859408 2.43e-01 120 chr3R:5038120-5038240 1.72e-01 120 chr3L:6344754-6344874 1.45e-01 79_[+5(4.68e-05)]_33 chr2R:10601223-10601343 1.86e-02 120 chr3L:8421926-8422046 1.20e-01 43_[+1(7.14e-05)]_69 chr2L:12543973-12544093 1.15e-01 23_[+2(3.89e-05)]_89 chr3L:16486195-16486315 2.23e-01 120 chr2R:8896339-8896459 4.80e-01 120 chrX:8580930-8581050 1.46e-02 44_[+3(6.77e-05)]_68 chr2R:21496717-21496837 5.24e-03 76_[+1(9.93e-05)]_36 chr3L:14450672-14450792 3.23e-01 120 chr2L:3095545-3095665 4.14e-04 32_[+2(6.99e-05)]_6_[+2(3.89e-05)]_\ 2_[+2(3.89e-05)]_34_[+5(2.32e-05)]_14 chr2L:9945204-9945324 5.23e-01 120 chr3L:10559438-10559558 3.31e-01 120 chr3R:21653558-21653678 1.25e-01 120 chr3R:20547886-20548006 4.39e-02 120 chr3R:12288349-12288469 2.87e-01 18_[+5(5.70e-05)]_94 chr3L:41833-41953 1.35e-02 64_[+3(1.52e-05)]_48 chrX:13126334-13126454 2.59e-01 120 chr3R:27925845-27925965 2.09e-01 120 chr3R:24004145-24004265 1.39e-05 [+1(2.66e-05)]_80_[+2(3.89e-05)]_9_\ [+5(2.32e-05)]_7 chrX:13116589-13116709 9.78e-03 44_[+1(2.66e-05)]_68 chrX:18836530-18836650 7.18e-02 64_[+2(6.99e-05)]_48 chr2L:14665333-14665453 8.31e-04 49_[+1(2.66e-05)]_32_[+2(3.89e-05)]_\ 23 chr3R:10539575-10539695 1.19e-03 [+4(1.67e-05)]_3_[+1(2.66e-05)]_13_\ [+1(2.66e-05)]_80 chr3R:16334392-16334512 1.70e-01 120 chr3R:31719089-31719209 2.73e-01 53_[+3(6.77e-05)]_59 chrX:19485190-19485310 1.27e-01 19_[+1(7.14e-05)]_8_[+1(9.93e-05)]_\ 16_[+1(9.93e-05)]_53 chr2R:10601984-10602104 2.17e-02 60_[+1(2.66e-05)]_52 chr3L:22862774-22862894 1.01e-01 95_[+5(2.32e-05)]_17 chr3R:10592978-10593098 9.06e-03 12_[+1(2.66e-05)]_100 chr3L:16497108-16497228 1.01e-01 120 chr2R:7472421-7472541 2.32e-01 120 chr3L:14059699-14059819 2.38e-01 120 chr3L:19079095-19079215 5.57e-03 79_[+5(4.68e-05)]_33 chr3R:22326732-22326852 2.01e-05 10_[+2(3.89e-05)]_53_[+1(2.66e-05)]_\ 41 chr2L:11027497-11027617 1.38e-01 103_[+2(3.89e-05)]_9 chr3L:10930556-10930676 5.03e-01 120 chrX:7100820-7100940 5.27e-02 108_[+3(1.52e-05)]_4 chr3R:28913184-28913304 1.01e-02 21_[+1(9.93e-05)]_14_[+1(2.66e-05)]_\ 69 chr3R:12717091-12717211 3.03e-01 120 chr3R:8164990-8165110 2.52e-01 53_[+2(3.89e-05)]_[+2(3.89e-05)]_51 chr3R:30290635-30290755 2.35e-01 120 chr2R:11214031-11214151 1.46e-01 63_[+4(1.67e-05)]_49 chr3R:18371451-18371571 3.34e-02 8_[+2(3.89e-05)]_[+2(3.89e-05)]_96 chr3R:17019287-17019407 1.10e-02 33_[+1(7.14e-05)]_79 chr2L:16590495-16590615 1.47e-01 120 chr3R:5737514-5737634 1.88e-02 5_[+4(1.67e-05)]_107 chr3R:26004501-26004621 1.37e-01 52_[+2(3.89e-05)]_21_[+2(3.89e-05)]_\ 31 chr3L:5821644-5821764 1.54e-01 120 chrX:7573065-7573185 1.56e-01 120 chr2L:7207811-7207931 1.84e-01 38_[+3(1.52e-05)]_74 chr3R:27069341-27069461 3.40e-03 66_[+1(7.14e-05)]_1_[+4(6.65e-05)]_\ 37 chr3L:12014436-12014556 6.83e-02 48_[+4(1.67e-05)]_64 chr3L:1754213-1754333 2.09e-01 38_[+5(5.70e-05)]_74 chr3L:19833339-19833459 6.21e-02 26_[+2(6.99e-05)]_86 chrX:17726136-17726256 8.56e-02 10_[+1(7.14e-05)]_102 chr3R:21824540-21824660 3.63e-01 120 chr3L:10534058-10534178 2.71e-02 32_[+1(2.66e-05)]_30_[+1(2.66e-05)]_\ 42 chr3R:28914212-28914332 3.48e-03 61_[+1(7.14e-05)]_51 chr3R:21943995-21944115 3.90e-01 120 chrX:17875097-17875217 3.27e-02 95_[+4(3.32e-05)]_17 chr3L:22351739-22351859 5.62e-01 120 chr2R:19697490-19697610 5.66e-02 36_[+2(3.89e-05)]_76 chr2R:7370401-7370521 3.67e-05 24_[+1(9.93e-05)]_60_[+5(8.62e-05)]_\ 20 chr2L:16602509-16602629 5.80e-02 71_[+2(3.89e-05)]_41 chr2R:24131363-24131483 1.42e-01 41_[+5(2.32e-05)]_71 chrX:7973451-7973571 6.04e-03 19_[+1(2.66e-05)]_93 chr3L:8781676-8781796 8.80e-02 41_[+1(9.93e-05)]_12_[+1(9.93e-05)]_\ 51 chr3R:26543631-26543751 3.39e-02 48_[+1(2.66e-05)]_6_[+1(2.66e-05)]_\ 50 chr3R:27603712-27603832 1.01e-02 42_[+5(9.84e-05)]_70 chrX:8159085-8159205 7.83e-01 120 chr3L:21893939-21894059 6.91e-01 120 chr3R:4214920-4215040 7.09e-01 120 chr2R:16131881-16132001 4.26e-01 120 chr2L:13122727-13122847 4.62e-02 72_[+2(3.89e-05)]_40 chr3L:16854386-16854506 4.96e-01 120 chrX:15620538-15620658 9.57e-03 96_[+1(9.93e-05)]_16 chr2R:24980667-24980787 1.17e-01 54_[+4(3.32e-05)]_58 chr3R:5622178-5622298 9.61e-01 120 chr2R:16154092-16154212 2.71e-01 13_[+2(3.89e-05)]_24_[+2(3.89e-05)]_\ 67 chr3R:25556121-25556241 1.10e-01 60_[+1(7.14e-05)]_52 chr3R:13716245-13716365 8.67e-02 18_[+1(7.14e-05)]_94 chr3L:12628254-12628374 2.82e-02 73_[+4(1.67e-05)]_39 chr3R:30005471-30005591 4.07e-02 44_[+1(7.14e-05)]_[+1(7.14e-05)]_2_\ [+1(2.66e-05)]_50 chr2R:9960510-9960630 2.02e-03 18_[+3(1.52e-05)]_94 chrX:17488573-17488693 1.32e-01 120 chr3R:30357195-30357315 7.45e-01 120 chrX:5768988-5769108 3.36e-02 13_[+1(2.66e-05)]_9_[+1(7.14e-05)]_\ 8_[+1(2.66e-05)]_31_[+1(7.14e-05)]_27 chr2R:15700460-15700580 1.39e-01 7_[+5(4.68e-05)]_79_[+5(2.32e-05)]_\ 18 chr2R:10553082-10553202 1.09e-02 120 chr3R:31347026-31347146 2.50e-01 120 chr2L:19565722-19565842 3.27e-02 29_[+4(3.32e-05)]_83 chrX:10773713-10773833 5.14e-01 120 chr2R:16821722-16821842 6.64e-01 120 chr3R:21948779-21948899 3.75e-02 120 chrX:19165412-19165532 9.34e-03 64_[+1(2.66e-05)]_26_[+1(7.14e-05)]_\ 14 chr3R:14653458-14653578 2.10e-02 120 chrX:13879586-13879706 3.53e-03 50_[+1(7.14e-05)]_62 chr3R:21896238-21896358 3.80e-02 45_[+1(2.66e-05)]_8_[+1(7.14e-05)]_\ 51 chr3R:28531834-28531954 7.86e-01 120 chr2R:17266126-17266246 1.37e-01 103_[+2(3.89e-05)]_9 chr3R:13989076-13989196 1.56e-01 50_[+5(2.32e-05)]_62 chr2R:23730928-23731048 1.06e-02 71_[+4(1.67e-05)]_41 chrX:15080072-15080192 3.60e-02 42_[+4(1.67e-05)]_70 chr2L:5292158-5292278 1.13e-01 120 chr2L:19359946-19360066 2.22e-02 36_[+2(6.99e-05)]_33_[+5(4.68e-05)]_\ 35 chr3L:1866507-1866627 6.86e-01 120 chrX:1319075-1319195 9.84e-01 120 chr3L:11323631-11323751 9.82e-01 120 chr2L:4886028-4886148 2.50e-02 44_[+4(1.67e-05)]_68 chr3L:4252110-4252230 1.46e-01 120 chr2L:19393792-19393912 1.45e-01 38_[+5(9.84e-05)]_74 chr2R:21136203-21136323 6.60e-02 12_[+3(1.52e-05)]_100 chrX:3175269-3175389 4.59e-01 120 chr3L:19057539-19057659 1.09e-01 62_[+5(4.68e-05)]_50 chrX:10893139-10893259 4.64e-02 2_[+1(2.66e-05)]_16_[+1(2.66e-05)]_\ 86 chr3L:9462920-9463040 4.11e-01 120 chr2L:168410-168530 7.37e-02 86_[+1(7.14e-05)]_26 chr3R:24117091-24117211 5.91e-01 120 chr3L:6382921-6383041 7.45e-01 120 chr3L:5141469-5141589 6.21e-01 120 chr3L:7135003-7135123 1.99e-03 70_[+1(2.66e-05)]_42 chr2R:18432713-18432833 1.22e-01 120 chr2R:18924874-18924994 4.11e-01 120 chr3R:18146813-18146933 3.14e-02 26_[+1(2.66e-05)]_86 chr3L:17993926-17994046 4.88e-03 38_[+4(3.32e-05)]_74 chrX:2880796-2880916 6.57e-03 29_[+1(9.93e-05)]_83 chrX:16762215-16762335 4.40e-02 90_[+4(5.30e-05)]_22 chrX:11123657-11123777 1.28e-03 65_[+1(7.14e-05)]_31_[+2(6.99e-05)]_\ 8 chr2R:11180837-11180957 1.22e-02 37_[+2(6.99e-05)]_75 chr3R:16289026-16289146 6.92e-02 120 chr3L:14529879-14529999 1.93e-01 120 chr3L:17631392-17631512 7.00e-01 120 chr2L:1951539-1951659 8.19e-01 120 chrX:5051200-5051320 6.66e-04 120 chr2L:9707212-9707332 5.19e-03 35_[+3(1.52e-05)]_14_[+2(3.89e-05)]_\ 55 chr2L:2802665-2802785 5.21e-01 120 chr3R:21592090-21592210 3.55e-03 10_[+3(3.05e-05)]_102 chr3L:21899585-21899705 5.51e-01 120 chr3L:18889418-18889538 4.61e-01 120 chr2R:23230038-23230158 8.31e-01 120 chr3L:10964164-10964284 8.51e-02 120 chr3R:30014038-30014158 3.51e-03 40_[+1(7.14e-05)]_10_[+3(6.77e-05)]_\ 54 chr2R:6148130-6148250 1.86e-02 26_[+3(1.52e-05)]_86 chr2R:7585764-7585884 4.75e-01 120 chrX:4540419-4540539 2.82e-01 120 chr2L:3299948-3300068 7.22e-03 80_[+1(9.93e-05)]_32 chrX:6631994-6632114 4.42e-02 91_[+1(2.66e-05)]_21 chrX:3161930-3162050 4.20e-03 76_[+2(3.89e-05)]_36 chr3R:16340734-16340854 1.46e-01 120 chr2R:19157634-19157754 3.47e-01 93_[+2(6.99e-05)]_19 chr3R:24935871-24935991 2.67e-01 120 chr2L:4375207-4375327 4.76e-02 74_[+1(7.14e-05)]_38 chr3R:19317477-19317597 1.42e-01 69_[+3(6.77e-05)]_43 chr3L:16153304-16153424 6.25e-03 1_[+1(2.66e-05)]_2_[+1(2.66e-05)]_\ 101 chrX:8176396-8176516 2.59e-02 120 chr3R:30285096-30285216 8.89e-02 120 chr3L:8360413-8360533 1.80e-02 64_[+2(6.99e-05)]_48 chr3L:3060199-3060319 4.26e-02 120 chr2R:7764298-7764418 7.22e-02 58_[+2(3.89e-05)]_54 chr2R:20580844-20580964 3.31e-02 65_[+1(7.14e-05)]_21_[+1(2.66e-05)]_\ 18 chr3L:9863777-9863897 2.69e-01 79_[+4(5.30e-05)]_33 chr3R:23319101-23319221 3.05e-01 22_[+2(3.89e-05)]_90 chr2R:21061452-21061572 6.95e-02 120 chr2L:19144257-19144377 6.46e-03 97_[+1(7.14e-05)]_7_[+1(9.93e-05)] chr2R:6991955-6992075 1.43e-03 47_[+5(2.32e-05)]_4_[+5(5.70e-05)]_\ 53 chr2R:21618935-21619055 8.96e-01 120 chr3R:8890594-8890714 2.70e-01 120 chr3R:9389127-9389247 2.63e-03 56_[+3(1.52e-05)]_56 chr3L:9847088-9847208 1.33e-02 63_[+1(7.14e-05)]_49 chr3R:26464541-26464661 1.27e-02 47_[+3(1.52e-05)]_65 chr2L:8418255-8418375 4.47e-02 32_[+3(1.52e-05)]_80 chrX:3964954-3965074 5.78e-02 92_[+1(7.14e-05)]_20 chrX:9077717-9077837 2.42e-02 60_[+2(3.89e-05)]_38_[+2(6.99e-05)]_\ 6 chrX:18835639-18835759 7.12e-02 120 chrX:7735442-7735562 7.69e-02 120 chr2R:9714258-9714378 1.36e-01 120 chr3R:21646498-21646618 4.65e-01 120 chr3R:25493921-25494041 8.87e-02 77_[+4(1.67e-05)]_35 chr3L:16214925-16215045 8.38e-03 3_[+1(7.14e-05)]_109 chrX:6730789-6730909 4.61e-03 46_[+1(2.66e-05)]_66 chr2R:22596892-22597012 3.39e-02 68_[+4(1.67e-05)]_44 chr2L:16255660-16255780 5.23e-03 120 chr2L:7880598-7880718 9.66e-01 120 chr3R:8705642-8705762 8.51e-03 25_[+1(7.14e-05)]_12_[+1(7.14e-05)]_\ 67 chr3R:9226313-9226433 3.72e-02 112_[+1(2.66e-05)] chr2R:9281727-9281847 5.27e-01 120 chr2L:11965783-11965903 1.27e-01 [+2(3.89e-05)]_112 chr3R:21938516-21938636 1.69e-02 94_[+1(9.93e-05)]_18 chr3L:5551176-5551296 5.97e-02 53_[+2(3.89e-05)]_59 chr2L:2584643-2584763 1.10e-01 67_[+3(3.05e-05)]_45 chrX:3866251-3866371 1.68e-02 [+1(2.66e-05)]_26_[+1(7.14e-05)]_78 chr3L:7433638-7433758 3.11e-01 37_[+2(6.99e-05)]_75 chr2L:8002342-8002462 8.30e-04 46_[+3(3.05e-05)]_1_[+2(3.89e-05)]_\ 14_[+3(1.52e-05)]_35 chr2L:13035825-13035945 1.70e-03 36_[+1(7.14e-05)]_21_[+2(3.89e-05)]_\ 47 chr3R:24319796-24319916 6.39e-02 120 chr2R:17439601-17439721 3.31e-01 81_[+3(6.77e-05)]_31 chr2L:10794127-10794247 1.75e-01 65_[+2(6.99e-05)]_5_[+2(3.89e-05)]_\ 34 chrX:18866403-18866523 8.07e-02 16_[+1(9.93e-05)]_96 chr2R:15237724-15237844 1.60e-01 54_[+2(3.89e-05)]_6_[+2(3.89e-05)]_\ 44 chrX:13644752-13644872 2.39e-03 49_[+4(1.67e-05)]_63 chr3L:1381088-1381208 1.08e-01 120 chr2L:2806346-2806466 1.48e-02 32_[+5(8.62e-05)]_16_[+4(5.30e-05)]_\ 56 chr3R:12449987-12450107 1.23e-01 120 chr3R:10115102-10115222 6.45e-03 76_[+3(1.52e-05)]_36 chrX:6708240-6708360 1.67e-02 46_[+1(7.14e-05)]_66 chr2L:11032769-11032889 3.30e-02 60_[+1(2.66e-05)]_52 chr2R:12876974-12877094 1.51e-01 86_[+5(2.32e-05)]_26 chrX:10932398-10932518 1.26e-01 15_[+2(3.89e-05)]_97 chr3R:30289498-30289618 6.45e-02 44_[+1(2.66e-05)]_10_[+1(7.14e-05)]_\ 50 chrX:5988229-5988349 2.73e-02 56_[+4(5.30e-05)]_56 chr2R:11189295-11189415 4.57e-02 59_[+3(3.05e-05)]_53 chr2L:16448156-16448276 6.21e-03 40_[+1(7.14e-05)]_72 chr2L:16536647-16536767 2.58e-02 8_[+2(6.99e-05)]_104 chr3L:20317096-20317216 9.71e-01 120 chrX:13949091-13949211 9.07e-02 97_[+1(9.93e-05)]_3_[+1(9.93e-05)]_\ 4 chr2L:20812657-20812777 3.40e-03 62_[+1(2.66e-05)]_50 chr3R:6726172-6726292 4.19e-03 120 chr2L:1886921-1887041 9.01e-01 120 chr3R:8922711-8922831 1.28e-01 2_[+2(3.89e-05)]_110 chr2R:18567314-18567434 7.47e-01 120 chr2L:7466425-7466545 4.71e-02 67_[+1(7.14e-05)]_45 chr2L:131464-131584 6.23e-02 120 chr2L:16511465-16511585 8.76e-01 120 chr3L:19234526-19234646 4.91e-03 120 chr3L:20387940-20388060 1.16e-03 74_[+3(1.52e-05)]_28_[+5(4.68e-05)]_\ 2 chr2L:12527746-12527866 8.29e-01 120 chr2R:18879228-18879348 2.00e-03 [+1(7.14e-05)]_78_[+2(3.89e-05)]_26 chr3R:20556841-20556961 6.82e-03 69_[+4(1.67e-05)]_43 chr3L:16803419-16803539 3.16e-01 120 chr3R:16232708-16232828 3.17e-02 32_[+2(6.99e-05)]_80 chr2R:22586965-22587085 2.26e-03 45_[+1(9.93e-05)]_67 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************