******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/gfzf.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:7150683-7150803 1.0000 120 chr3R:27272378-27272498 1.0000 120 chr2L:16729678-16729798 1.0000 120 chr2R:11368142-11368262 1.0000 120 chr3R:9748025-9748145 1.0000 120 chr2R:9822933-9823053 1.0000 120 chr2L:10268748-10268868 1.0000 120 chr3L:3461243-3461363 1.0000 120 chr2R:16283102-16283222 1.0000 120 chrX:2610310-2610430 1.0000 120 chr3R:25023183-25023303 1.0000 120 chr3L:22193-22313 1.0000 120 chr2L:5058222-5058342 1.0000 120 chr3L:16782932-16783052 1.0000 120 chr3R:24922393-24922513 1.0000 120 chr3R:10767752-10767872 1.0000 120 chr3L:4322210-4322330 1.0000 120 chrX:19261285-19261405 1.0000 120 chr3L:7640469-7640589 1.0000 120 chr2L:10210654-10210774 1.0000 120 chr2L:11004451-11004571 1.0000 120 chrX:17302323-17302443 1.0000 120 chrX:8407744-8407864 1.0000 120 chr3R:12679023-12679143 1.0000 120 chrX:1465969-1466089 1.0000 120 chrX:2617518-2617638 1.0000 120 chr3L:12149176-12149296 1.0000 120 chr3R:25071022-25071142 1.0000 120 chr3L:21942080-21942200 1.0000 120 chr3L:4003382-4003502 1.0000 120 chrX:16587785-16587905 1.0000 120 chr2L:8041000-8041120 1.0000 120 chr2L:9657384-9657504 1.0000 120 chr3L:18820973-18821093 1.0000 120 chrX:13667814-13667934 1.0000 120 chr2R:18972825-18972945 1.0000 120 chr3L:5779609-5779729 1.0000 120 chr3R:12704999-12705119 1.0000 120 chr2R:8891703-8891823 1.0000 120 chrX:19276868-19276988 1.0000 120 chr3R:27582776-27582896 1.0000 120 chrX:17629449-17629569 1.0000 120 chr3R:20617805-20617925 1.0000 120 chrX:21605241-21605361 1.0000 120 chrX:16884403-16884523 1.0000 120 chr2L:21148400-21148520 1.0000 120 chr3L:12805798-12805918 1.0000 120 chr2R:22073343-22073463 1.0000 120 chr3L:11793480-11793600 1.0000 120 chr3R:20581512-20581632 1.0000 120 chr2R:16138580-16138700 1.0000 120 chr3L:9972208-9972328 1.0000 120 chr2L:20926102-20926222 1.0000 120 chr2L:21725-21845 1.0000 120 chr3R:8343483-8343603 1.0000 120 chr3R:16273853-16273973 1.0000 120 chr3R:29816414-29816534 1.0000 120 chr3L:4277883-4278003 1.0000 120 chr3R:27228499-27228619 1.0000 120 chr3L:12205985-12206105 1.0000 120 chr3L:7369734-7369854 1.0000 120 chrX:11599733-11599853 1.0000 120 chr3L:21027383-21027503 1.0000 120 chr3R:23929259-23929379 1.0000 120 chr2L:292325-292445 1.0000 120 chr3R:25235498-25235618 1.0000 120 chr3R:11230518-11230638 1.0000 120 chr3L:12399295-12399415 1.0000 120 chr3L:4626658-4626778 1.0000 120 chr3L:10225234-10225354 1.0000 120 chr3L:1831906-1832026 1.0000 120 chr3R:20635349-20635469 1.0000 120 chr3L:21267927-21268047 1.0000 120 chrX:3799124-3799244 1.0000 120 chrX:16800673-16800793 1.0000 120 chr2L:10266633-10266753 1.0000 120 chr3L:17245706-17245826 1.0000 120 chr2R:14993795-14993915 1.0000 120 chrX:6050384-6050504 1.0000 120 chr2R:12636128-12636248 1.0000 120 chr3L:15987786-15987906 1.0000 120 chr2R:12180235-12180355 1.0000 120 chr2R:19486747-19486867 1.0000 120 chrX:22482025-22482145 1.0000 120 chr3R:8561681-8561801 1.0000 120 chr2L:14334064-14334184 1.0000 120 chr2R:7924900-7925020 1.0000 120 chr2R:8625377-8625497 1.0000 120 chr2R:23811953-23812073 1.0000 120 chr2L:13790877-13790997 1.0000 120 chr2L:13827686-13827806 1.0000 120 chr2L:10210857-10210977 1.0000 120 chr3R:27165608-27165728 1.0000 120 chrX:10929766-10929886 1.0000 120 chrX:20393728-20393848 1.0000 120 chr2R:11293135-11293255 1.0000 120 chr2L:16902162-16902282 1.0000 120 chr2R:24775205-24775325 1.0000 120 chr3L:3169254-3169374 1.0000 120 chrX:23096666-23096786 1.0000 120 chr3R:9015239-9015359 1.0000 120 chr3L:10882771-10882891 1.0000 120 chr2R:21481524-21481644 1.0000 120 chr3L:1500036-1500156 1.0000 120 chr2R:17563513-17563633 1.0000 120 chr2R:16867663-16867783 1.0000 120 chr2L:810495-810615 1.0000 120 chrX:11349004-11349124 1.0000 120 chr2R:20319068-20319188 1.0000 120 chr3R:24357896-24358016 1.0000 120 chr3L:9047339-9047459 1.0000 120 chrX:15788766-15788886 1.0000 120 chr2L:2757555-2757675 1.0000 120 chr2L:12048884-12049004 1.0000 120 chr3L:19261370-19261490 1.0000 120 chr3L:7238473-7238593 1.0000 120 chr3L:3042283-3042403 1.0000 120 chrX:927986-928106 1.0000 120 chr2L:20923326-20923446 1.0000 120 chr3R:15268566-15268686 1.0000 120 chr3L:12534506-12534626 1.0000 120 chrX:4627313-4627433 1.0000 120 chr4:796695-796815 1.0000 120 chr2L:7409722-7409842 1.0000 120 chrX:15859331-15859451 1.0000 120 chr3L:17433369-17433489 1.0000 120 chr2R:25190087-25190207 1.0000 120 chrX:16695113-16695233 1.0000 120 chr2R:10897816-10897936 1.0000 120 chr3L:21635266-21635386 1.0000 120 chr2L:9673083-9673203 1.0000 120 chrX:18379884-18380004 1.0000 120 chr4:775412-775532 1.0000 120 chr3R:22492889-22493009 1.0000 120 chr3R:17040132-17040252 1.0000 120 chrX:16886490-16886610 1.0000 120 chr2R:12571960-12572080 1.0000 120 chr2R:24875820-24875940 1.0000 120 chr3L:13997134-13997254 1.0000 120 chr3L:11164923-11165043 1.0000 120 chrX:18657256-18657376 1.0000 120 chr2L:18321095-18321215 1.0000 120 chr3R:5555021-5555141 1.0000 120 chr2L:6127627-6127747 1.0000 120 chr2R:12431063-12431183 1.0000 120 chr3L:5897399-5897519 1.0000 120 chr2L:13641186-13641306 1.0000 120 chr3L:1331653-1331773 1.0000 120 chr3R:27947992-27948112 1.0000 120 chr2L:10206903-10207023 1.0000 120 chr3R:4484990-4485110 1.0000 120 chr3L:8180819-8180939 1.0000 120 chrX:8442317-8442437 1.0000 120 chrX:10212772-10212892 1.0000 120 chr3R:30000441-30000561 1.0000 120 chrX:4702233-4702353 1.0000 120 chr3R:13958721-13958841 1.0000 120 chr3R:30150723-30150843 1.0000 120 chr3L:1970296-1970416 1.0000 120 chr3R:27695168-27695288 1.0000 120 chr2L:472955-473075 1.0000 120 chr2R:17573398-17573518 1.0000 120 chr2L:6000173-6000293 1.0000 120 chrX:22540352-22540472 1.0000 120 chr2R:9400466-9400586 1.0000 120 chr2L:15007799-15007919 1.0000 120 chr3L:18745773-18745893 1.0000 120 chr2R:12180437-12180557 1.0000 120 chr2L:11004747-11004867 1.0000 120 chr3L:19583570-19583690 1.0000 120 chr2L:20223087-20223207 1.0000 120 chr2L:15005631-15005751 1.0000 120 chr2R:11360112-11360232 1.0000 120 chr3R:27679153-27679273 1.0000 120 chrX:22444663-22444783 1.0000 120 chrX:16942866-16942986 1.0000 120 chr2L:2954548-2954668 1.0000 120 chr3R:5570713-5570833 1.0000 120 chr3L:12745274-12745394 1.0000 120 chr3L:21823379-21823499 1.0000 120 chr3R:8344354-8344474 1.0000 120 chr2L:16910353-16910473 1.0000 120 chrX:476897-477017 1.0000 120 chr2R:11442401-11442521 1.0000 120 chr2R:13980095-13980215 1.0000 120 chr3L:19979784-19979904 1.0000 120 chr3R:31617921-31618041 1.0000 120 chr2L:20926316-20926436 1.0000 120 chr3R:27921077-27921197 1.0000 120 chr3R:29491064-29491184 1.0000 120 chrX:15983699-15983819 1.0000 120 chr3L:16144029-16144149 1.0000 120 chrX:12668104-12668224 1.0000 120 chr2L:16262045-16262165 1.0000 120 chr3R:15223103-15223223 1.0000 120 chrX:16940810-16940930 1.0000 120 chr2R:23877623-23877743 1.0000 120 chrX:16800872-16800992 1.0000 120 chr3L:212632-212752 1.0000 120 chr2L:16732056-16732176 1.0000 120 chr2R:21624847-21624967 1.0000 120 chrX:9247221-9247341 1.0000 120 chrX:6698546-6698666 1.0000 120 chr2L:20835622-20835742 1.0000 120 chr3L:1970094-1970214 1.0000 120 chr3L:7916357-7916477 1.0000 120 chrX:16886713-16886833 1.0000 120 chr3L:11998093-11998213 1.0000 120 chr2L:9253058-9253178 1.0000 120 chr3R:16272905-16273025 1.0000 120 chr2R:9237859-9237979 1.0000 120 chr3L:11109598-11109718 1.0000 120 chr3L:21832202-21832322 1.0000 120 chr2L:10344345-10344465 1.0000 120 chr2L:18864-18984 1.0000 120 chr3R:22741082-22741202 1.0000 120 chrX:15940987-15941107 1.0000 120 chrX:19695034-19695154 1.0000 120 chrX:15769598-15769718 1.0000 120 chr3R:27681977-27682097 1.0000 120 chr2R:16001640-16001760 1.0000 120 chr3L:5777272-5777392 1.0000 120 chr3R:24851535-24851655 1.0000 120 chr2R:17670033-17670153 1.0000 120 chr3L:12267427-12267547 1.0000 120 chr3L:16113146-16113266 1.0000 120 chr2R:21719907-21720027 1.0000 120 chr2R:15145483-15145603 1.0000 120 chrX:8721653-8721773 1.0000 120 chr3L:18622232-18622352 1.0000 120 chr2R:7445711-7445831 1.0000 120 chr3L:12534093-12534213 1.0000 120 chr3R:15278581-15278701 1.0000 120 chr2L:18612218-18612338 1.0000 120 chr2R:9965006-9965126 1.0000 120 chr2R:16957418-16957538 1.0000 120 chr2R:8627822-8627942 1.0000 120 chrX:7959470-7959590 1.0000 120 chr2R:23752654-23752774 1.0000 120 chr3R:29933178-29933298 1.0000 120 chr3L:10463087-10463207 1.0000 120 chr2R:15682676-15682796 1.0000 120 chr2L:3452390-3452510 1.0000 120 chrX:16553922-16554042 1.0000 120 chr2R:24876025-24876145 1.0000 120 chr3L:16121933-16122053 1.0000 120 chr2L:11990818-11990938 1.0000 120 chr3L:21529304-21529424 1.0000 120 chr2L:10327904-10328024 1.0000 120 chr3L:5779916-5780036 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_gfzf/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/gfzf.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.305 C 0.191 G 0.188 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.305 C 0.191 G 0.188 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-1 width = 8 sites = 84 llr = 796 E-value = 1.4e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::19:9: pos.-specific C ::28:9:a probability G aa:::::: matrix T ::8:::1: bits 2.4 ** 2.2 ** * 1.9 ** * * 1.7 ** * * Relative 1.4 ** * * * Entropy 1.2 ** *** * (13.7 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3452390-3452510 76 7.24e-06 CCTGCCCTAC GGTCACAC CGAACACAAC chr2R:15682676-15682796 34 7.24e-06 ATTTGCGGTC GGTCACAC TGAAATTCAA chr2R:16957418-16957538 43 7.24e-06 AAACGTAAGC GGTCACAC TCAGAATCAG chr3L:16113146-16113266 77 7.24e-06 TGTCGCCAAC GGTCACAC TGCACAACTC chr3R:24851535-24851655 64 7.24e-06 GTACCGAAAC GGTCACAC GCAACACTGC chr2R:16001640-16001760 106 7.24e-06 ATTCCACGGC GGTCACAC CGAAAAG chrX:15769598-15769718 63 7.24e-06 GCCACGACAT GGTCACAC TGAACGCTTG chr3L:11109598-11109718 93 7.24e-06 AAGCAAAAAC GGTCACAC TGCCCGCACA chr2L:16262045-16262165 91 7.24e-06 TATTACATCT GGTCACAC TGTCCGTTTG chr3R:31617921-31618041 63 7.24e-06 TCATGAGCCT GGTCACAC TGTCTTGCAC chr2R:13980095-13980215 107 7.24e-06 TACAAAGTTT GGTCACAC TATTTG chr3R:8344354-8344474 60 7.24e-06 CAAAGCAGCT GGTCACAC TGCTTGAACA chr3L:12745274-12745394 72 7.24e-06 CTCGAAGCTT GGTCACAC TGGTGCATAG chr3L:18745773-18745893 74 7.24e-06 CTCGTGTTCT GGTCACAC TGTTATCTGG chr2L:6000173-6000293 64 7.24e-06 GTGCAGTCAC GGTCACAC TGGCGAGCAG chr2R:17573398-17573518 44 7.24e-06 TGAACCACCT GGTCACAC CCACCCCTTG chr2L:472955-473075 64 7.24e-06 TGCCTGAAAC GGTCACAC TGTGCTCAGA chrX:4702233-4702353 46 7.24e-06 TTTTATTTAG GGTCACAC TAATAGGCCA chr3R:4484990-4485110 31 7.24e-06 GTATCGGAAT GGTCACAC TGCTGCGTTG chrX:18657256-18657376 74 7.24e-06 GTGTTGGTTT GGTCACAC TGAATTTTAG chr3L:3042283-3042403 101 7.24e-06 TGCGTATTAC GGTCACAC CAATGCCGGC chr3L:19261370-19261490 58 7.24e-06 ACTCCGCTTT GGTCACAC TGCTCGGCGA chrX:15788766-15788886 92 7.24e-06 GCCGTGCGAC GGTCACAC TGGATCTGAA chr2R:17563513-17563633 74 7.24e-06 TTCTCAACGC GGTCACAC TTTTTATAAA chr3L:3169254-3169374 39 7.24e-06 TCATCTGTAT GGTCACAC TGTTTTCACG chrX:6050384-6050504 69 7.24e-06 AAACTGTGTT GGTCACAC TGCAGCGTTG chr3R:20635349-20635469 50 7.24e-06 GCGATATTTC GGTCACAC AGAGCGCTTA chr3L:4626658-4626778 77 7.24e-06 AAAAGTCCGC GGTCACAC TGCCCATCTG chrX:11599733-11599853 87 7.24e-06 TCCGGCAGCT GGTCACAC TGTACAGTCG chr3L:4277883-4278003 83 7.24e-06 CGCACCTTCT GGTCACAC CTGAGCATTG chr3L:11793480-11793600 66 7.24e-06 CGTGGAGTGC GGTCACAC TGCCGTTGAG chr3R:20617805-20617925 72 7.24e-06 GACGTGCGAC GGTCACAC TGATGGCCTC chr3R:27582776-27582896 62 7.24e-06 GACCCCAATC GGTCACAC TGGTCGTGAA chr3R:12704999-12705119 92 7.24e-06 TTCGATCTGT GGTCACAC CTCAAACCGG chr3L:4003382-4003502 77 7.24e-06 AGCGCGCTAT GGTCACAC AACCAGCTGA chr3L:3461243-3461363 78 7.24e-06 CGCTAAGTCC GGTCACAC TTAAAAGTTC chr2R:11368142-11368262 78 7.24e-06 CATGAACGGC GGTCACAC TGTCCGAAAT chr3R:22741082-22741202 79 1.16e-05 TCACTTCATT GGCCACAC TTACAAGTGG chrX:12668104-12668224 102 1.16e-05 TGTGAAAAGC GGCCACAC TAAAGGTCAG chr3L:21823379-21823499 83 1.16e-05 CGCAGCTAAC GGCCACAC TGCGCCCCAA chrX:4627313-4627433 51 1.16e-05 ATAGGCATTT GGCCACAC TGCGATATAG chr2L:13790877-13790997 80 1.16e-05 TCTCCCACTT GGCCACAC TAATGTAGCG chr2R:12636128-12636248 79 1.16e-05 CGCTGACCTT GGCCACAC CTAGCACCAT chr3R:25071022-25071142 94 1.16e-05 AGTGGTACGT GGCCACAC TGCGACTAAC chr2L:11990818-11990938 89 1.91e-05 ATTTGCAGAC GGTCACTC TAGGGATAAA chr3L:7238473-7238593 87 1.91e-05 GTACGCAACT GGTCACTC TAGTATTATT chr3R:24357896-24358016 84 1.91e-05 CCAAAGTTAA GGTCACTC TAAAAGTAAC chr2R:8625377-8625497 82 1.91e-05 TAGCGCATAT GGTCACTC TAGGCCATTA chr3L:7369734-7369854 108 1.91e-05 GTCGCCATGC GGTCACTC TGTTC chr2L:20926316-20926436 46 3.50e-05 TTTTCTTATG GGTAACAC AATATTTTTC chrX:22444663-22444783 93 3.50e-05 TTAACAGTCT GGTAACAC TGACAGAAAA chr2L:11004747-11004867 76 3.50e-05 GAGGATATCT GGTAACAC TTAGCAGAAG chr2R:12431063-12431183 82 3.50e-05 TTATTAATTT GGTAACAC TGCCGCGCGG chr2R:16867663-16867783 76 3.50e-05 TCACTGCAAC GGTAACAC TGCGCATAAG chr3L:1500036-1500156 64 3.50e-05 AAACCGAACT GGGCACAC GGCGGGACAT chr2R:11293135-11293255 97 3.50e-05 ATTGCGTTAT GGTAACAC TACGTGATTT chr3R:24922393-24922513 87 3.50e-05 AGCAGCGCCT GGTAACAC TACGAGATCA chr3R:25023183-25023303 88 3.50e-05 GTTCATCAGC GGGCACAC TTCCAACCGG chr2L:10268748-10268868 94 3.50e-05 CTTCTGCGCC GGTAACAC TAGTCCACTT chr2L:10266633-10266753 81 3.94e-05 CAATAGACTT GGTCGCAC CGATGTAAAC chr3R:29816414-29816534 81 3.94e-05 GCACAGACAT GGTCGCAC TATTTTCGGC chr3R:5570713-5570833 87 4.40e-05 AGACTCACCT GGCCACTC TAGCAATATC chr2L:15007799-15007919 30 4.40e-05 AGCAGTAAAC GGCCACTC TAGCACACTA chr3L:8180819-8180939 90 4.40e-05 TGAGCCATCT GGCCACTC TGGCACCTCC chr2L:292325-292445 86 4.40e-05 TCCGTAAACT GGCCACTC TCTTGTCAGC chr3R:15278581-15278701 77 7.01e-05 TGGCACATGC GGTTACAC TGCAAGTTGA chr3R:30000441-30000561 88 7.01e-05 TTAAGTGGAC GGTTACAC TGCAAACGGT chr2R:21481524-21481644 17 7.01e-05 GCTAAGCTGC GGTTACAC TGATTTACAC chr3L:9972208-9972328 111 7.01e-05 CGCAAACTCT GGTCAGAC TG chr2R:23752654-23752774 107 9.41e-05 AGGCAGGAAG GGTCATAC TAACAC chr2R:20319068-20319188 77 9.41e-05 TCCAGCCCAC GGTCTCAC TAGAAGGCGC chrX:20393728-20393848 70 9.41e-05 ACGACGAACT GGTCACCC TGGCCTGAAC chr2L:14334064-14334184 78 9.41e-05 GTCCCCACTC GGTCATAC CGATTGGCTT chr3L:17245706-17245826 85 1.01e-04 CCATTTATCC GGTCCCAC TATTtctctc chr3L:16121933-16122053 19 1.25e-04 CGAAGTTCAT GGTAACTC TATAACAACA chr3L:12267427-12267547 90 1.25e-04 TAAAAGCGGC GGGCACTC CGCAACTCAG chr3L:10882771-10882891 100 1.25e-04 TAAAAACTGC GGACACAC TGAAAGACAT chr3L:21635266-21635386 46 1.37e-04 ATGCATGCGC GGTCACAT TGAGCGTAAA chr2L:810495-810615 83 1.37e-04 ATCTGTAAAT GGTCACAT ATGTTTTCGG chr2L:2954548-2954668 67 1.44e-04 TGTTCCTTAG GGGAACAC TTGAAGCCGA chr2R:14993795-14993915 37 1.60e-04 CGTGCAGAGT GGCCAGAC GTTGAAACGT chr3L:12534093-12534213 34 1.74e-04 GGGCGCCGTG GGCCTCAC CCTATACCCC chr3L:12149176-12149296 86 1.74e-04 CTCCAGTTCT GGCCATAC TGCATCACAA chrX:476897-477017 96 1.87e-04 TTTTTAATAT GGTAGCAC TATTCTAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3452390-3452510 7.2e-06 75_[+1]_37 chr2R:15682676-15682796 7.2e-06 33_[+1]_79 chr2R:16957418-16957538 7.2e-06 42_[+1]_70 chr3L:16113146-16113266 7.2e-06 76_[+1]_36 chr3R:24851535-24851655 7.2e-06 63_[+1]_49 chr2R:16001640-16001760 7.2e-06 105_[+1]_7 chrX:15769598-15769718 7.2e-06 62_[+1]_50 chr3L:11109598-11109718 7.2e-06 92_[+1]_20 chr2L:16262045-16262165 7.2e-06 90_[+1]_22 chr3R:31617921-31618041 7.2e-06 62_[+1]_50 chr2R:13980095-13980215 7.2e-06 106_[+1]_6 chr3R:8344354-8344474 7.2e-06 59_[+1]_53 chr3L:12745274-12745394 7.2e-06 71_[+1]_41 chr3L:18745773-18745893 7.2e-06 73_[+1]_39 chr2L:6000173-6000293 7.2e-06 63_[+1]_49 chr2R:17573398-17573518 7.2e-06 43_[+1]_69 chr2L:472955-473075 7.2e-06 63_[+1]_49 chrX:4702233-4702353 7.2e-06 45_[+1]_67 chr3R:4484990-4485110 7.2e-06 30_[+1]_82 chrX:18657256-18657376 7.2e-06 73_[+1]_39 chr3L:3042283-3042403 7.2e-06 100_[+1]_12 chr3L:19261370-19261490 7.2e-06 57_[+1]_55 chrX:15788766-15788886 7.2e-06 91_[+1]_21 chr2R:17563513-17563633 7.2e-06 73_[+1]_39 chr3L:3169254-3169374 7.2e-06 38_[+1]_74 chrX:6050384-6050504 7.2e-06 68_[+1]_44 chr3R:20635349-20635469 7.2e-06 49_[+1]_63 chr3L:4626658-4626778 7.2e-06 76_[+1]_36 chrX:11599733-11599853 7.2e-06 86_[+1]_26 chr3L:4277883-4278003 7.2e-06 82_[+1]_30 chr3L:11793480-11793600 7.2e-06 65_[+1]_47 chr3R:20617805-20617925 7.2e-06 71_[+1]_41 chr3R:27582776-27582896 7.2e-06 61_[+1]_51 chr3R:12704999-12705119 7.2e-06 91_[+1]_21 chr3L:4003382-4003502 7.2e-06 76_[+1]_36 chr3L:3461243-3461363 7.2e-06 77_[+1]_35 chr2R:11368142-11368262 7.2e-06 77_[+1]_35 chr3R:22741082-22741202 1.2e-05 78_[+1]_34 chrX:12668104-12668224 1.2e-05 101_[+1]_11 chr3L:21823379-21823499 1.2e-05 82_[+1]_30 chrX:4627313-4627433 1.2e-05 50_[+1]_62 chr2L:13790877-13790997 1.2e-05 79_[+1]_33 chr2R:12636128-12636248 1.2e-05 78_[+1]_34 chr3R:25071022-25071142 1.2e-05 93_[+1]_19 chr2L:11990818-11990938 1.9e-05 88_[+1]_24 chr3L:7238473-7238593 1.9e-05 86_[+1]_26 chr3R:24357896-24358016 1.9e-05 83_[+1]_29 chr2R:8625377-8625497 1.9e-05 81_[+1]_31 chr3L:7369734-7369854 1.9e-05 107_[+1]_5 chr2L:20926316-20926436 3.5e-05 45_[+1]_67 chrX:22444663-22444783 3.5e-05 92_[+1]_20 chr2L:11004747-11004867 3.5e-05 75_[+1]_37 chr2R:12431063-12431183 3.5e-05 81_[+1]_31 chr2R:16867663-16867783 3.5e-05 75_[+1]_37 chr3L:1500036-1500156 3.5e-05 63_[+1]_49 chr2R:11293135-11293255 3.5e-05 96_[+1]_16 chr3R:24922393-24922513 3.5e-05 86_[+1]_26 chr3R:25023183-25023303 3.5e-05 87_[+1]_25 chr2L:10268748-10268868 3.5e-05 93_[+1]_19 chr2L:10266633-10266753 3.9e-05 80_[+1]_32 chr3R:29816414-29816534 3.9e-05 80_[+1]_32 chr3R:5570713-5570833 4.4e-05 86_[+1]_26 chr2L:15007799-15007919 4.4e-05 29_[+1]_83 chr3L:8180819-8180939 4.4e-05 89_[+1]_23 chr2L:292325-292445 4.4e-05 85_[+1]_27 chr3R:15278581-15278701 7e-05 76_[+1]_36 chr3R:30000441-30000561 7e-05 87_[+1]_25 chr2R:21481524-21481644 7e-05 16_[+1]_96 chr3L:9972208-9972328 7e-05 110_[+1]_2 chr2R:23752654-23752774 9.4e-05 106_[+1]_6 chr2R:20319068-20319188 9.4e-05 76_[+1]_36 chrX:20393728-20393848 9.4e-05 69_[+1]_43 chr2L:14334064-14334184 9.4e-05 77_[+1]_35 chr3L:17245706-17245826 0.0001 84_[+1]_28 chr3L:16121933-16122053 0.00012 18_[+1]_94 chr3L:12267427-12267547 0.00012 89_[+1]_23 chr3L:10882771-10882891 0.00012 99_[+1]_13 chr3L:21635266-21635386 0.00014 45_[+1]_67 chr2L:810495-810615 0.00014 82_[+1]_30 chr2L:2954548-2954668 0.00014 66_[+1]_46 chr2R:14993795-14993915 0.00016 36_[+1]_76 chr3L:12534093-12534213 0.00017 33_[+1]_79 chr3L:12149176-12149296 0.00017 85_[+1]_27 chrX:476897-477017 0.00019 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=84 chr2L:3452390-3452510 ( 76) GGTCACAC 1 chr2R:15682676-15682796 ( 34) GGTCACAC 1 chr2R:16957418-16957538 ( 43) GGTCACAC 1 chr3L:16113146-16113266 ( 77) GGTCACAC 1 chr3R:24851535-24851655 ( 64) GGTCACAC 1 chr2R:16001640-16001760 ( 106) GGTCACAC 1 chrX:15769598-15769718 ( 63) GGTCACAC 1 chr3L:11109598-11109718 ( 93) GGTCACAC 1 chr2L:16262045-16262165 ( 91) GGTCACAC 1 chr3R:31617921-31618041 ( 63) GGTCACAC 1 chr2R:13980095-13980215 ( 107) GGTCACAC 1 chr3R:8344354-8344474 ( 60) GGTCACAC 1 chr3L:12745274-12745394 ( 72) GGTCACAC 1 chr3L:18745773-18745893 ( 74) GGTCACAC 1 chr2L:6000173-6000293 ( 64) GGTCACAC 1 chr2R:17573398-17573518 ( 44) GGTCACAC 1 chr2L:472955-473075 ( 64) GGTCACAC 1 chrX:4702233-4702353 ( 46) GGTCACAC 1 chr3R:4484990-4485110 ( 31) GGTCACAC 1 chrX:18657256-18657376 ( 74) GGTCACAC 1 chr3L:3042283-3042403 ( 101) GGTCACAC 1 chr3L:19261370-19261490 ( 58) GGTCACAC 1 chrX:15788766-15788886 ( 92) GGTCACAC 1 chr2R:17563513-17563633 ( 74) GGTCACAC 1 chr3L:3169254-3169374 ( 39) GGTCACAC 1 chrX:6050384-6050504 ( 69) GGTCACAC 1 chr3R:20635349-20635469 ( 50) GGTCACAC 1 chr3L:4626658-4626778 ( 77) GGTCACAC 1 chrX:11599733-11599853 ( 87) GGTCACAC 1 chr3L:4277883-4278003 ( 83) GGTCACAC 1 chr3L:11793480-11793600 ( 66) GGTCACAC 1 chr3R:20617805-20617925 ( 72) GGTCACAC 1 chr3R:27582776-27582896 ( 62) GGTCACAC 1 chr3R:12704999-12705119 ( 92) GGTCACAC 1 chr3L:4003382-4003502 ( 77) GGTCACAC 1 chr3L:3461243-3461363 ( 78) GGTCACAC 1 chr2R:11368142-11368262 ( 78) GGTCACAC 1 chr3R:22741082-22741202 ( 79) GGCCACAC 1 chrX:12668104-12668224 ( 102) GGCCACAC 1 chr3L:21823379-21823499 ( 83) GGCCACAC 1 chrX:4627313-4627433 ( 51) GGCCACAC 1 chr2L:13790877-13790997 ( 80) GGCCACAC 1 chr2R:12636128-12636248 ( 79) GGCCACAC 1 chr3R:25071022-25071142 ( 94) GGCCACAC 1 chr2L:11990818-11990938 ( 89) GGTCACTC 1 chr3L:7238473-7238593 ( 87) GGTCACTC 1 chr3R:24357896-24358016 ( 84) GGTCACTC 1 chr2R:8625377-8625497 ( 82) GGTCACTC 1 chr3L:7369734-7369854 ( 108) GGTCACTC 1 chr2L:20926316-20926436 ( 46) GGTAACAC 1 chrX:22444663-22444783 ( 93) GGTAACAC 1 chr2L:11004747-11004867 ( 76) GGTAACAC 1 chr2R:12431063-12431183 ( 82) GGTAACAC 1 chr2R:16867663-16867783 ( 76) GGTAACAC 1 chr3L:1500036-1500156 ( 64) GGGCACAC 1 chr2R:11293135-11293255 ( 97) GGTAACAC 1 chr3R:24922393-24922513 ( 87) GGTAACAC 1 chr3R:25023183-25023303 ( 88) GGGCACAC 1 chr2L:10268748-10268868 ( 94) GGTAACAC 1 chr2L:10266633-10266753 ( 81) GGTCGCAC 1 chr3R:29816414-29816534 ( 81) GGTCGCAC 1 chr3R:5570713-5570833 ( 87) GGCCACTC 1 chr2L:15007799-15007919 ( 30) GGCCACTC 1 chr3L:8180819-8180939 ( 90) GGCCACTC 1 chr2L:292325-292445 ( 86) GGCCACTC 1 chr3R:15278581-15278701 ( 77) GGTTACAC 1 chr3R:30000441-30000561 ( 88) GGTTACAC 1 chr2R:21481524-21481644 ( 17) GGTTACAC 1 chr3L:9972208-9972328 ( 111) GGTCAGAC 1 chr2R:23752654-23752774 ( 107) GGTCATAC 1 chr2R:20319068-20319188 ( 77) GGTCTCAC 1 chrX:20393728-20393848 ( 70) GGTCACCC 1 chr2L:14334064-14334184 ( 78) GGTCATAC 1 chr3L:17245706-17245826 ( 85) GGTCCCAC 1 chr3L:16121933-16122053 ( 19) GGTAACTC 1 chr3L:12267427-12267547 ( 90) GGGCACTC 1 chr3L:10882771-10882891 ( 100) GGACACAC 1 chr3L:21635266-21635386 ( 46) GGTCACAT 1 chr2L:810495-810615 ( 83) GGTCACAT 1 chr2L:2954548-2954668 ( 67) GGGAACAC 1 chr2R:14993795-14993915 ( 37) GGCCAGAC 1 chr3L:12534093-12534213 ( 34) GGCCTCAC 1 chr3L:12149176-12149296 ( 86) GGCCATAC 1 chrX:476897-477017 ( 96) GGTAGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3778 E= 1.4e-085 -1304 -1304 241 -1304 -1304 -1304 241 -1304 -468 -20 -198 129 -122 213 -1304 -314 161 -400 -239 -373 -1304 230 -298 -314 149 -400 -1304 -127 -1304 235 -1304 -373 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.4e-085 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.011905 0.166667 0.047619 0.773810 0.130952 0.833333 0.000000 0.035714 0.928571 0.011905 0.035714 0.023810 0.000000 0.940476 0.023810 0.035714 0.857143 0.011905 0.000000 0.130952 0.000000 0.976190 0.000000 0.023810 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-2 width = 8 sites = 84 llr = 797 E-value = 7.1e-087 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::7:: pos.-specific C :::::1a9 probability G a:a:82:: matrix T :9:a1::1 bits 2.4 * 2.2 * * * 1.9 * * ** 1.7 * ** ** Relative 1.4 * *** ** Entropy 1.2 ***** ** (13.7 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16121933-16122053 42 7.38e-06 CAACAAAATA GTGTGACC GGACTTATGT chr3R:15278581-15278701 102 7.38e-06 TGAGAACGAA GTGTGACC AGTTATATGA chr2R:7445711-7445831 47 7.38e-06 ATTCTTGGTA GTGTGACC AAGCAACGCC chr3L:12267427-12267547 28 7.38e-06 CAAATGTAAA GTGTGACC AGTTACAAGT chr3R:27681977-27682097 22 7.38e-06 TTAGCTTGAA GTGTGACC GCACTTTGGT chr3R:22741082-22741202 37 7.38e-06 CAGAATGCCA GTGTGACC AGGGTTCGGA chr2L:18864-18984 55 7.38e-06 TTTGTGGGCA GTGTGACC ATGTCCAATC chr3L:11998093-11998213 26 7.38e-06 ACTAGGCTCG GTGTGACC GCACCACAGT chr3L:1970094-1970214 14 7.38e-06 AAATCGGATG GTGTGACC GCTAATATGC chrX:16940810-16940930 50 7.38e-06 CTTAAGCTAG GTGTGACC AAGTGCAGGG chr3R:15223103-15223223 54 7.38e-06 GCTGCCGCAA GTGTGACC AGATTCGGAA chr3R:29491064-29491184 53 7.38e-06 CAGCCGAATG GTGTGACC GTGCCGAGCG chr3R:27695168-27695288 29 7.38e-06 TCTATTTGCA GTGTGACC ATAGCGCAAT chr3L:5897399-5897519 51 7.38e-06 ATGTGCATTT GTGTGACC AGCCGAACAT chr2L:6127627-6127747 19 7.38e-06 CTCAAGCACA GTGTGACC GTGCGAGGAT chr2L:18321095-18321215 43 7.38e-06 TCCGTGCCAA GTGTGACC TTTCGCATCT chr2R:10897816-10897936 36 7.38e-06 AAGCAGAACA GTGTGACC GCAGTTCACT chr2L:7409722-7409842 73 7.38e-06 AACGGCTTTA GTGTGACC TCACCTAAGA chr2L:12048884-12049004 66 7.38e-06 CTGTTCAACA GTGTGACC AATATGCGCT chr2R:24775205-24775325 38 7.38e-06 TCGGTGGATA GTGTGACC GTTCGGATAA chr2R:7924900-7925020 69 7.38e-06 CCTTTGCCTA GTGTGACC AGATAACAAG chr2R:12636128-12636248 2 7.38e-06 T GTGTGACC GTATTGGGCT chrX:16800673-16800793 11 7.38e-06 GCTTTAGCCA GTGTGACC GGCGGGCGAT chr3L:12205985-12206105 25 7.38e-06 GTCCATGTCA GTGTGACC AAGGCCAATC chr3R:16273853-16273973 25 7.38e-06 AGTGCTTTTA GTGTGACC AGCATACGCT chr3R:8343483-8343603 25 7.38e-06 AGAGCGAATA GTGTGACC TAATTTGGCA chr2L:21725-21845 19 7.38e-06 TTTGTGGGCA GTGTGACC ATGTCCAATC chr2R:22073343-22073463 32 7.38e-06 GTGGCGCGTA GTGTGACC GCTTTGGCGG chr2L:21148400-21148520 9 7.38e-06 TCATACCA GTGTGACC GTGAGGTCGG chrX:19276868-19276988 21 7.38e-06 GACCCCGTTA GTGTGACC GCCACGTGGA chr2L:10210654-10210774 14 7.38e-06 TACGAAAATA GTGTGACC GGATCAAGAG chr3L:16782932-16783052 36 7.38e-06 CGAATGATTA GTGTGACC ATGCGGCGGT chr2L:5058222-5058342 20 7.38e-06 GCGAATTGCG GTGTGACC CTAAATCGTT chr2R:16283102-16283222 1 7.38e-06 . GTGTGACC AAGGCTTGCT chr2R:9965006-9965126 58 1.19e-05 GTGACGTGCG GTGTGGCC AGAGTTGCGA chr3L:212632-212752 26 1.19e-05 GCGTATCGGA GTGTGGCC GAAGCTGACA chrX:22540352-22540472 36 1.19e-05 TTAGCGCGCA GTGTGGCC GTGCACGCGA chrX:8442317-8442437 13 1.19e-05 AATAACAAAA GTGTGGCC ACCGCATAAG chr3R:9015239-9015359 99 1.19e-05 TTGCGTCTTG GTGTGGCC AGAAATTTTG chr3L:12399295-12399415 22 1.19e-05 GTCGGCTGCA GTGTGGCC GTACCTTTAG chr2L:20926102-20926222 39 1.19e-05 AGAGCTGATA GTGTGGCC GTAGGTCGAA chr3L:7916357-7916477 43 1.66e-05 TTGAAGTCCA GTGTGCCC AACTTGTTAA chr3L:16144029-16144149 67 1.66e-05 GAATATATTA GTGTGCCC AGCTCCATTT chr3R:13958721-13958841 18 1.66e-05 ATTTTCACAA GTGTGCCC AGCTAAACGG chrX:4627313-4627433 14 1.66e-05 GCGGAAAACG GTGTGCCC AGATGTAAAG chr3R:24357896-24358016 36 1.66e-05 ATATCACACT GTGTGCCC ATATCGCTAT chr2L:16902162-16902282 51 1.66e-05 TGGCCCAAAA GTGTGCCC GCCCTTGACC chrX:20393728-20393848 18 1.66e-05 CAGCAGCGCA GTGTGCCC GCTGACTTGC chr2L:10327904-10328024 53 2.90e-05 GTCATTATTA GTGTTACC GTGCGACATG chr2L:18612218-18612338 24 2.90e-05 TGTTGTTTGT GTGTTACC GTTTCGCACT chr3L:5777272-5777392 50 2.90e-05 CGAGCGGCCA GTGTTACC AGATGGGCAA chrX:16942866-16942986 1 2.90e-05 . GTGTTACC AGAGCGTGGA chr2R:12431063-12431183 14 2.90e-05 CTTTCTAGCA GTGTTACC AGATTGTAAA chr3R:17040132-17040252 85 2.90e-05 TAATATTTTA GTGTTACC AGAAGTAAGC chr3R:20581512-20581632 31 2.90e-05 GTTTTTCTAT GTGTTACC AGATCGCATT chrX:2610310-2610430 21 2.90e-05 CAACAAAAGA GTGTTACC CTGCCGCGGT chr2R:9822933-9823053 15 2.90e-05 CCCGCGTGTA GTGTTACC TCAGCTATTG chr2R:15145483-15145603 31 3.61e-05 AAGTGTTTTA GAGTGACC GTTGTGGGGT chrX:6698546-6698666 33 3.61e-05 TTTCGGCGCA GAGTGACC GACCATCAAA chr3R:27947992-27948112 14 3.61e-05 CTCGTGCCCA GAGTGACC GCAGCGGGAA chr2R:23811953-23812073 17 3.61e-05 TCTCGAATTA GAGTGACC GTCCTCGGGT chr3R:8561681-8561801 58 3.61e-05 CGCCGGCGTA GAGTGACC AAACTTCTCA chr3L:15987786-15987906 23 3.61e-05 AGGCACGTTA GAGTGACC GCAGCTAGAT chrX:19695034-19695154 9 4.83e-05 ATCCACCA GTGTGACT GCCTCGAAGT chrX:15859331-15859451 35 4.83e-05 GATAGCAATA GTGTGACT GCGTTTGGAG chr2L:9253058-9253178 54 5.60e-05 TCATGGAACA GTGTTGCC AGATGGCTTT chrX:10212772-10212892 1 5.60e-05 . GTGTTGCC ACTAAAAGTT chr3L:21027383-21027503 22 5.60e-05 GGCAGAGCCA GTGTTGCC AGCTAGCACA chr2L:16732056-16732176 70 6.03e-05 GTTAAATGCA GAGTGGCC GTATGCTGGG chr2R:17670033-17670153 56 7.23e-05 CTTATCTGTA GTATGACC CTCACACAAA chr3R:5555021-5555141 16 7.23e-05 CTTGATTTTA GTATGACC TTGTGCTTTA chr2R:24875820-24875940 38 7.23e-05 CAGTTCATCA GTATGACC GAAACATGAC chr3R:25235498-25235618 19 7.23e-05 GTGGTTAATA GTATGACC GTAGGGAGCT chrX:18657256-18657376 27 8.42e-05 TGCTTGTCTA GGGTGACC GTACCGAGTT chr3L:18820973-18821093 78 8.42e-05 TTGTGAGAAA CTGTGACC ATGTCAGTAT chr3L:19583570-19583690 27 9.64e-05 CTTCACTTTC GTGGGACC GACCGTTATA chr2L:10206903-10207023 53 1.13e-04 TCGCCCAGAT GTGTAACC GTACTCGCAT chr3L:10225234-10225354 4 1.13e-04 GGA GTGTAACC GTGACTGAAG chr3L:21832202-21832322 41 1.25e-04 TGCTCCCCCA ATGTGACC AGTCGTGGAT chrX:23096666-23096786 44 1.25e-04 CACTTACCCA ATGTGACC GCATACTGGT chrX:16800872-16800992 53 1.32e-04 TTGAATGCTA GTGTGGCT GCAACCAATA chr3R:29816414-29816534 39 1.32e-04 GTGACGACCA GTGTGGCT GCGCTAATGA chr3R:15268566-15268686 45 1.67e-04 CCTTACTTTT CTGTGGCC CCCCCATTGT chrX:21605241-21605361 84 1.67e-04 CCTACTATTA GTGTGCCT GTACGTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16121933-16122053 7.4e-06 41_[+2]_71 chr3R:15278581-15278701 7.4e-06 101_[+2]_11 chr2R:7445711-7445831 7.4e-06 46_[+2]_66 chr3L:12267427-12267547 7.4e-06 27_[+2]_85 chr3R:27681977-27682097 7.4e-06 21_[+2]_91 chr3R:22741082-22741202 7.4e-06 36_[+2]_76 chr2L:18864-18984 7.4e-06 54_[+2]_58 chr3L:11998093-11998213 7.4e-06 25_[+2]_87 chr3L:1970094-1970214 7.4e-06 13_[+2]_99 chrX:16940810-16940930 7.4e-06 49_[+2]_63 chr3R:15223103-15223223 7.4e-06 53_[+2]_59 chr3R:29491064-29491184 7.4e-06 52_[+2]_60 chr3R:27695168-27695288 7.4e-06 28_[+2]_84 chr3L:5897399-5897519 7.4e-06 50_[+2]_62 chr2L:6127627-6127747 7.4e-06 18_[+2]_94 chr2L:18321095-18321215 7.4e-06 42_[+2]_70 chr2R:10897816-10897936 7.4e-06 35_[+2]_77 chr2L:7409722-7409842 7.4e-06 72_[+2]_40 chr2L:12048884-12049004 7.4e-06 65_[+2]_47 chr2R:24775205-24775325 7.4e-06 37_[+2]_75 chr2R:7924900-7925020 7.4e-06 68_[+2]_44 chr2R:12636128-12636248 7.4e-06 1_[+2]_111 chrX:16800673-16800793 7.4e-06 10_[+2]_102 chr3L:12205985-12206105 7.4e-06 24_[+2]_88 chr3R:16273853-16273973 7.4e-06 24_[+2]_88 chr3R:8343483-8343603 7.4e-06 24_[+2]_88 chr2L:21725-21845 7.4e-06 18_[+2]_94 chr2R:22073343-22073463 7.4e-06 31_[+2]_81 chr2L:21148400-21148520 7.4e-06 8_[+2]_104 chrX:19276868-19276988 7.4e-06 20_[+2]_92 chr2L:10210654-10210774 7.4e-06 13_[+2]_99 chr3L:16782932-16783052 7.4e-06 35_[+2]_77 chr2L:5058222-5058342 7.4e-06 19_[+2]_93 chr2R:16283102-16283222 7.4e-06 [+2]_112 chr2R:9965006-9965126 1.2e-05 57_[+2]_55 chr3L:212632-212752 1.2e-05 25_[+2]_87 chrX:22540352-22540472 1.2e-05 35_[+2]_77 chrX:8442317-8442437 1.2e-05 12_[+2]_100 chr3R:9015239-9015359 1.2e-05 98_[+2]_14 chr3L:12399295-12399415 1.2e-05 21_[+2]_91 chr2L:20926102-20926222 1.2e-05 38_[+2]_74 chr3L:7916357-7916477 1.7e-05 42_[+2]_70 chr3L:16144029-16144149 1.7e-05 66_[+2]_46 chr3R:13958721-13958841 1.7e-05 17_[+2]_95 chrX:4627313-4627433 1.7e-05 13_[+2]_99 chr3R:24357896-24358016 1.7e-05 35_[+2]_77 chr2L:16902162-16902282 1.7e-05 50_[+2]_62 chrX:20393728-20393848 1.7e-05 17_[+2]_95 chr2L:10327904-10328024 2.9e-05 52_[+2]_60 chr2L:18612218-18612338 2.9e-05 23_[+2]_89 chr3L:5777272-5777392 2.9e-05 49_[+2]_63 chrX:16942866-16942986 2.9e-05 [+2]_112 chr2R:12431063-12431183 2.9e-05 13_[+2]_99 chr3R:17040132-17040252 2.9e-05 84_[+2]_28 chr3R:20581512-20581632 2.9e-05 30_[+2]_82 chrX:2610310-2610430 2.9e-05 20_[+2]_92 chr2R:9822933-9823053 2.9e-05 14_[+2]_98 chr2R:15145483-15145603 3.6e-05 30_[+2]_82 chrX:6698546-6698666 3.6e-05 32_[+2]_80 chr3R:27947992-27948112 3.6e-05 13_[+2]_99 chr2R:23811953-23812073 3.6e-05 16_[+2]_96 chr3R:8561681-8561801 3.6e-05 57_[+2]_55 chr3L:15987786-15987906 3.6e-05 22_[+2]_90 chrX:19695034-19695154 4.8e-05 8_[+2]_104 chrX:15859331-15859451 4.8e-05 34_[+2]_78 chr2L:9253058-9253178 5.6e-05 53_[+2]_59 chrX:10212772-10212892 5.6e-05 [+2]_112 chr3L:21027383-21027503 5.6e-05 21_[+2]_91 chr2L:16732056-16732176 6e-05 69_[+2]_43 chr2R:17670033-17670153 7.2e-05 55_[+2]_57 chr3R:5555021-5555141 7.2e-05 15_[+2]_97 chr2R:24875820-24875940 7.2e-05 37_[+2]_75 chr3R:25235498-25235618 7.2e-05 18_[+2]_94 chrX:18657256-18657376 8.4e-05 26_[+2]_86 chr3L:18820973-18821093 8.4e-05 77_[+2]_35 chr3L:19583570-19583690 9.6e-05 26_[+2]_86 chr2L:10206903-10207023 0.00011 52_[+2]_60 chr3L:10225234-10225354 0.00011 3_[+2]_109 chr3L:21832202-21832322 0.00012 40_[+2]_72 chrX:23096666-23096786 0.00012 43_[+2]_69 chrX:16800872-16800992 0.00013 52_[+2]_60 chr3R:29816414-29816534 0.00013 38_[+2]_74 chr3R:15268566-15268686 0.00017 44_[+2]_68 chrX:21605241-21605361 0.00017 83_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=84 chr3L:16121933-16122053 ( 42) GTGTGACC 1 chr3R:15278581-15278701 ( 102) GTGTGACC 1 chr2R:7445711-7445831 ( 47) GTGTGACC 1 chr3L:12267427-12267547 ( 28) GTGTGACC 1 chr3R:27681977-27682097 ( 22) GTGTGACC 1 chr3R:22741082-22741202 ( 37) GTGTGACC 1 chr2L:18864-18984 ( 55) GTGTGACC 1 chr3L:11998093-11998213 ( 26) GTGTGACC 1 chr3L:1970094-1970214 ( 14) GTGTGACC 1 chrX:16940810-16940930 ( 50) GTGTGACC 1 chr3R:15223103-15223223 ( 54) GTGTGACC 1 chr3R:29491064-29491184 ( 53) GTGTGACC 1 chr3R:27695168-27695288 ( 29) GTGTGACC 1 chr3L:5897399-5897519 ( 51) GTGTGACC 1 chr2L:6127627-6127747 ( 19) GTGTGACC 1 chr2L:18321095-18321215 ( 43) GTGTGACC 1 chr2R:10897816-10897936 ( 36) GTGTGACC 1 chr2L:7409722-7409842 ( 73) GTGTGACC 1 chr2L:12048884-12049004 ( 66) GTGTGACC 1 chr2R:24775205-24775325 ( 38) GTGTGACC 1 chr2R:7924900-7925020 ( 69) GTGTGACC 1 chr2R:12636128-12636248 ( 2) GTGTGACC 1 chrX:16800673-16800793 ( 11) GTGTGACC 1 chr3L:12205985-12206105 ( 25) GTGTGACC 1 chr3R:16273853-16273973 ( 25) GTGTGACC 1 chr3R:8343483-8343603 ( 25) GTGTGACC 1 chr2L:21725-21845 ( 19) GTGTGACC 1 chr2R:22073343-22073463 ( 32) GTGTGACC 1 chr2L:21148400-21148520 ( 9) GTGTGACC 1 chrX:19276868-19276988 ( 21) GTGTGACC 1 chr2L:10210654-10210774 ( 14) GTGTGACC 1 chr3L:16782932-16783052 ( 36) GTGTGACC 1 chr2L:5058222-5058342 ( 20) GTGTGACC 1 chr2R:16283102-16283222 ( 1) GTGTGACC 1 chr2R:9965006-9965126 ( 58) GTGTGGCC 1 chr3L:212632-212752 ( 26) GTGTGGCC 1 chrX:22540352-22540472 ( 36) GTGTGGCC 1 chrX:8442317-8442437 ( 13) GTGTGGCC 1 chr3R:9015239-9015359 ( 99) GTGTGGCC 1 chr3L:12399295-12399415 ( 22) GTGTGGCC 1 chr2L:20926102-20926222 ( 39) GTGTGGCC 1 chr3L:7916357-7916477 ( 43) GTGTGCCC 1 chr3L:16144029-16144149 ( 67) GTGTGCCC 1 chr3R:13958721-13958841 ( 18) GTGTGCCC 1 chrX:4627313-4627433 ( 14) GTGTGCCC 1 chr3R:24357896-24358016 ( 36) GTGTGCCC 1 chr2L:16902162-16902282 ( 51) GTGTGCCC 1 chrX:20393728-20393848 ( 18) GTGTGCCC 1 chr2L:10327904-10328024 ( 53) GTGTTACC 1 chr2L:18612218-18612338 ( 24) GTGTTACC 1 chr3L:5777272-5777392 ( 50) GTGTTACC 1 chrX:16942866-16942986 ( 1) GTGTTACC 1 chr2R:12431063-12431183 ( 14) GTGTTACC 1 chr3R:17040132-17040252 ( 85) GTGTTACC 1 chr3R:20581512-20581632 ( 31) GTGTTACC 1 chrX:2610310-2610430 ( 21) GTGTTACC 1 chr2R:9822933-9823053 ( 15) GTGTTACC 1 chr2R:15145483-15145603 ( 31) GAGTGACC 1 chrX:6698546-6698666 ( 33) GAGTGACC 1 chr3R:27947992-27948112 ( 14) GAGTGACC 1 chr2R:23811953-23812073 ( 17) GAGTGACC 1 chr3R:8561681-8561801 ( 58) GAGTGACC 1 chr3L:15987786-15987906 ( 23) GAGTGACC 1 chrX:19695034-19695154 ( 9) GTGTGACT 1 chrX:15859331-15859451 ( 35) GTGTGACT 1 chr2L:9253058-9253178 ( 54) GTGTTGCC 1 chrX:10212772-10212892 ( 1) GTGTTGCC 1 chr3L:21027383-21027503 ( 22) GTGTTGCC 1 chr2L:16732056-16732176 ( 70) GAGTGGCC 1 chr2R:17670033-17670153 ( 56) GTATGACC 1 chr3R:5555021-5555141 ( 16) GTATGACC 1 chr2R:24875820-24875940 ( 38) GTATGACC 1 chr3R:25235498-25235618 ( 19) GTATGACC 1 chrX:18657256-18657376 ( 27) GGGTGACC 1 chr3L:18820973-18821093 ( 78) CTGTGACC 1 chr3L:19583570-19583690 ( 27) GTGGGACC 1 chr2L:10206903-10207023 ( 53) GTGTAACC 1 chr3L:10225234-10225354 ( 4) GTGTAACC 1 chr3L:21832202-21832322 ( 41) ATGTGACC 1 chrX:23096666-23096786 ( 44) ATGTGACC 1 chrX:16800872-16800992 ( 53) GTGTGGCT 1 chr3R:29816414-29816534 ( 39) GTGTGGCT 1 chr3R:15268566-15268686 ( 45) CTGTGGCC 1 chrX:21605241-21605361 ( 84) GTGTGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3778 E= 7.1e-087 -368 -300 234 -1304 -187 -1304 -398 152 -268 -1304 234 -1304 -1304 -1304 -398 164 -368 -1304 215 -115 127 -100 -17 -1304 -1304 239 -1304 -1304 -1304 230 -1304 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 7.1e-087 0.023810 0.023810 0.952381 0.000000 0.083333 0.000000 0.011905 0.904762 0.047619 0.000000 0.952381 0.000000 0.000000 0.000000 0.011905 0.988095 0.023810 0.000000 0.833333 0.142857 0.738095 0.095238 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.940476 0.000000 0.059524 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-2 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 13.45 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAATACC MEME-3 width = 8 sites = 63 llr = 530 E-value = 8.9e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 998a:9:: pos.-specific C ::::::a8 probability G :::::1:: matrix T 112:a::2 bits 2.4 * 2.2 * 1.9 * 1.7 * ** Relative 1.4 * ***** Entropy 1.2 ** ***** (12.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAATACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18612218-18612338 81 3.04e-05 TTACATTTTG AAAATACC AAAAAATCGC chr3L:11998093-11998213 94 3.04e-05 TTATATTTTA AAAATACC TTTTATATGT chrX:16886713-16886833 57 3.04e-05 TTTCGATAGT AAAATACC AAAATATGTT chr2L:16732056-16732176 94 3.04e-05 TGGGCGGCTA AAAATACC GCTATTCTGA chrX:16940810-16940930 75 3.04e-05 GGGACAGGCC AAAATACC ATGGATCTAA chrX:22540352-22540472 82 3.04e-05 TTGTAGAGTA AAAATACC AAAAATGGCT chr3R:13958721-13958841 80 3.04e-05 CGCAGAGAAA AAAATACC GAACAAAAAA chr2L:10206903-10207023 95 3.04e-05 ATGCGCGTCG AAAATACC AAAAAAGAGC chr3R:27947992-27948112 61 3.04e-05 GGCTCGGGTG AAAATACC AGCACAAGTC chr2L:13641186-13641306 89 3.04e-05 TACGCCCTAA AAAATACC AGAACAAAAT chrX:18379884-18380004 23 3.04e-05 AGCTAAGCTG AAAATACC AGTAGCTTAA chrX:16695113-16695233 109 3.04e-05 ATTCGAACCG AAAATACC AGCA chr2R:24775205-24775325 62 3.04e-05 ATAACGATTA AAAATACC GTACGGCTGA chr2L:16902162-16902282 73 3.04e-05 TTGACCGTTA AAAATACC ATGCGTTCAA chr2R:11293135-11293255 44 3.04e-05 AGCAGTCCCC AAAATACC CAACGGAATC chrX:22482025-22482145 21 3.04e-05 ACGGCGAAGG AAAATACC ATCCGGCGCA chr2R:14993795-14993915 97 3.04e-05 ATCTGACATA AAAATACC AAACAGTTGC chr3L:21267927-21268047 86 3.04e-05 AAATACTAAT AAAATACC AAATATTTCT chr3L:10225234-10225354 28 3.04e-05 GAAGAGCGAA AAAATACC AGCTACACGC chr3L:12399295-12399415 40 3.04e-05 GTACCTTTAG AAAATACC ACCAACATTC chr2L:21725-21845 80 3.04e-05 TTTCCCATAC AAAATACC AAACAACTGT chr2R:22073343-22073463 56 3.04e-05 GCGGTGATGG AAAATACC GAAATTGGAA chrX:21605241-21605361 63 3.04e-05 AACTTAGCAA AAAATACC AACCCTACTA chr3L:3461243-3461363 37 3.04e-05 ACACTTTAAG AAAATACC ACAGCCAAGG chr2L:10268748-10268868 5 3.04e-05 AAAA AAAATACC CCATTTAACT chr2R:9822933-9823053 39 3.04e-05 ATTGTGGCTG AAAATACC ACACCGCTTT chrX:19695034-19695154 65 6.20e-05 GGTTGTGCTA AATATACC GCTAATCGAG chr2L:11004747-11004867 39 6.20e-05 ATTCAATCGA AATATACC AAAACAATAC chr2R:24875820-24875940 77 6.20e-05 ATTTAAACGT AATATACC GATTCTAGTA chrX:16886490-16886610 102 6.20e-05 ACCTACCTAA AATATACC TTTATTTAAA chrX:23096666-23096786 80 6.20e-05 AATATCGATA AATATACC AATCTATTTC chrX:16800673-16800793 57 6.20e-05 GACCCTCGAA AATATACC AACACAAAAG chr3L:12205985-12206105 49 6.20e-05 AATCCGTTCA AATATACC ATCATTAACA chrX:17629449-17629569 82 6.20e-05 ACAAACCATA AATATACC AAATCGATTA chrX:2610310-2610430 100 6.20e-05 CACTTTTTGG AATATACC ATTTGAAATT chr3L:5777272-5777392 66 1.12e-04 CCAGATGGGC AAAATACT TTTCCCCGAA chr2L:9253058-9253178 97 1.12e-04 CGACCGATTG AAAATACT AGAAATATTT chr3L:1970094-1970214 83 1.12e-04 CAACACACTA AAAATACT GGAATTAAAC chr2R:12571960-12572080 42 1.12e-04 AGCCCTCCAT AAAATACT AAGTTGCCGA chr2R:25190087-25190207 78 1.12e-04 ATATGCACCA AAAATACT AAAATTGTTT chr2L:7409722-7409842 97 1.12e-04 AAGACAACCA AAAATACT TTAGTTTGCT chr2L:12048884-12049004 94 1.12e-04 ACGGTGTATT AAAATACT GACTAGTATT chr3L:21942080-21942200 84 1.12e-04 CGTAGTTTGA AAAATACT TATCTCTACC chrX:8407744-8407864 107 1.12e-04 TATACTGTGA AAAATACT ACATAA chr3L:22193-22313 45 1.12e-04 GGGTTGTGTA AAAATACT GAGGACAGAC chr3R:29491064-29491184 72 1.31e-04 TGCCGAGCGA AAAATGCC AAGGGGATGA chr3R:27921077-27921197 15 1.31e-04 GAAACATTGA AAAATGCC ATTCTTCGTA chr3L:19979784-19979904 49 1.31e-04 AATGCACTAA AAAATGCC AAACGGCGAT chr2R:12180235-12180355 62 1.31e-04 AAGGTATTTA AAAATGCC GCCTTCTCTA chrX:16553922-16554042 79 1.94e-04 ACACCGAAAA TAAATACC AGAACCGTTT chr2R:15145483-15145603 74 1.94e-04 CCGTACTCAA ATAATACC TTTTTTCCGG chr2R:21719907-21720027 54 1.94e-04 AATGTGCTAA ATAATACC AGGAATGACA chrX:6698546-6698666 57 1.94e-04 CAAAGGCGAA ATAATACC ACAGCCACAT chr3L:21027383-21027503 78 1.94e-04 AAAGCACTAA TAAATACC ACAGAACACT chr2L:21148400-21148520 39 1.94e-04 AAGCGGTAGT TAAATACC AGAAGGTCCT chrX:19276868-19276988 88 1.94e-04 TCTCTATTTG TAAATACC GAAAACTGTG chr3L:7640469-7640589 39 1.94e-04 CCATTCAAAA ATAATACC AAATATAGAA chr3R:16273853-16273973 66 2.13e-04 CATACCAAAA GAAATACC GCAGTTTCGT chr2L:8041000-8041120 34 2.13e-04 AGTTACGTGA GAAATACC AAATTTTTGG chr3L:11109598-11109718 23 2.42e-04 TCCAGATTTA AAAAAACC GCTAATCTGA chr3L:21823379-21823499 25 2.42e-04 AATATTAAAA AAAAAACC TTTTGAAAAT chrX:1465969-1466089 49 2.42e-04 GGCGGTCAGT AAAAAACC CTAACGCATT chrX:16884403-16884523 4 2.94e-04 ACA AATATACT CCAATGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18612218-18612338 3e-05 80_[+3]_32 chr3L:11998093-11998213 3e-05 93_[+3]_19 chrX:16886713-16886833 3e-05 56_[+3]_56 chr2L:16732056-16732176 3e-05 93_[+3]_19 chrX:16940810-16940930 3e-05 74_[+3]_38 chrX:22540352-22540472 3e-05 81_[+3]_31 chr3R:13958721-13958841 3e-05 79_[+3]_33 chr2L:10206903-10207023 3e-05 94_[+3]_18 chr3R:27947992-27948112 3e-05 60_[+3]_52 chr2L:13641186-13641306 3e-05 88_[+3]_24 chrX:18379884-18380004 3e-05 22_[+3]_90 chrX:16695113-16695233 3e-05 108_[+3]_4 chr2R:24775205-24775325 3e-05 61_[+3]_51 chr2L:16902162-16902282 3e-05 72_[+3]_40 chr2R:11293135-11293255 3e-05 43_[+3]_69 chrX:22482025-22482145 3e-05 20_[+3]_92 chr2R:14993795-14993915 3e-05 96_[+3]_16 chr3L:21267927-21268047 3e-05 85_[+3]_27 chr3L:10225234-10225354 3e-05 27_[+3]_85 chr3L:12399295-12399415 3e-05 39_[+3]_73 chr2L:21725-21845 3e-05 79_[+3]_33 chr2R:22073343-22073463 3e-05 55_[+3]_57 chrX:21605241-21605361 3e-05 62_[+3]_50 chr3L:3461243-3461363 3e-05 36_[+3]_76 chr2L:10268748-10268868 3e-05 4_[+3]_108 chr2R:9822933-9823053 3e-05 38_[+3]_74 chrX:19695034-19695154 6.2e-05 64_[+3]_48 chr2L:11004747-11004867 6.2e-05 38_[+3]_74 chr2R:24875820-24875940 6.2e-05 76_[+3]_36 chrX:16886490-16886610 6.2e-05 101_[+3]_11 chrX:23096666-23096786 6.2e-05 79_[+3]_33 chrX:16800673-16800793 6.2e-05 56_[+3]_56 chr3L:12205985-12206105 6.2e-05 48_[+3]_64 chrX:17629449-17629569 6.2e-05 81_[+3]_31 chrX:2610310-2610430 6.2e-05 99_[+3]_13 chr3L:5777272-5777392 0.00011 65_[+3]_47 chr2L:9253058-9253178 0.00011 96_[+3]_16 chr3L:1970094-1970214 0.00011 82_[+3]_30 chr2R:12571960-12572080 0.00011 41_[+3]_71 chr2R:25190087-25190207 0.00011 77_[+3]_35 chr2L:7409722-7409842 0.00011 96_[+3]_16 chr2L:12048884-12049004 0.00011 93_[+3]_19 chr3L:21942080-21942200 0.00011 83_[+3]_29 chrX:8407744-8407864 0.00011 106_[+3]_6 chr3L:22193-22313 0.00011 44_[+3]_68 chr3R:29491064-29491184 0.00013 71_[+3]_41 chr3R:27921077-27921197 0.00013 14_[+3]_98 chr3L:19979784-19979904 0.00013 48_[+3]_64 chr2R:12180235-12180355 0.00013 61_[+3]_51 chrX:16553922-16554042 0.00019 78_[+3]_34 chr2R:15145483-15145603 0.00019 73_[+3]_39 chr2R:21719907-21720027 0.00019 53_[+3]_59 chrX:6698546-6698666 0.00019 56_[+3]_56 chr3L:21027383-21027503 0.00019 77_[+3]_35 chr2L:21148400-21148520 0.00019 38_[+3]_74 chrX:19276868-19276988 0.00019 87_[+3]_25 chr3L:7640469-7640589 0.00019 38_[+3]_74 chr3R:16273853-16273973 0.00021 65_[+3]_47 chr2L:8041000-8041120 0.00021 33_[+3]_79 chr3L:11109598-11109718 0.00024 22_[+3]_90 chr3L:21823379-21823499 0.00024 24_[+3]_88 chrX:1465969-1466089 0.00024 48_[+3]_64 chrX:16884403-16884523 0.00029 3_[+3]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATACC width=8 seqs=63 chr2L:18612218-18612338 ( 81) AAAATACC 1 chr3L:11998093-11998213 ( 94) AAAATACC 1 chrX:16886713-16886833 ( 57) AAAATACC 1 chr2L:16732056-16732176 ( 94) AAAATACC 1 chrX:16940810-16940930 ( 75) AAAATACC 1 chrX:22540352-22540472 ( 82) AAAATACC 1 chr3R:13958721-13958841 ( 80) AAAATACC 1 chr2L:10206903-10207023 ( 95) AAAATACC 1 chr3R:27947992-27948112 ( 61) AAAATACC 1 chr2L:13641186-13641306 ( 89) AAAATACC 1 chrX:18379884-18380004 ( 23) AAAATACC 1 chrX:16695113-16695233 ( 109) AAAATACC 1 chr2R:24775205-24775325 ( 62) AAAATACC 1 chr2L:16902162-16902282 ( 73) AAAATACC 1 chr2R:11293135-11293255 ( 44) AAAATACC 1 chrX:22482025-22482145 ( 21) AAAATACC 1 chr2R:14993795-14993915 ( 97) AAAATACC 1 chr3L:21267927-21268047 ( 86) AAAATACC 1 chr3L:10225234-10225354 ( 28) AAAATACC 1 chr3L:12399295-12399415 ( 40) AAAATACC 1 chr2L:21725-21845 ( 80) AAAATACC 1 chr2R:22073343-22073463 ( 56) AAAATACC 1 chrX:21605241-21605361 ( 63) AAAATACC 1 chr3L:3461243-3461363 ( 37) AAAATACC 1 chr2L:10268748-10268868 ( 5) AAAATACC 1 chr2R:9822933-9823053 ( 39) AAAATACC 1 chrX:19695034-19695154 ( 65) AATATACC 1 chr2L:11004747-11004867 ( 39) AATATACC 1 chr2R:24875820-24875940 ( 77) AATATACC 1 chrX:16886490-16886610 ( 102) AATATACC 1 chrX:23096666-23096786 ( 80) AATATACC 1 chrX:16800673-16800793 ( 57) AATATACC 1 chr3L:12205985-12206105 ( 49) AATATACC 1 chrX:17629449-17629569 ( 82) AATATACC 1 chrX:2610310-2610430 ( 100) AATATACC 1 chr3L:5777272-5777392 ( 66) AAAATACT 1 chr2L:9253058-9253178 ( 97) AAAATACT 1 chr3L:1970094-1970214 ( 83) AAAATACT 1 chr2R:12571960-12572080 ( 42) AAAATACT 1 chr2R:25190087-25190207 ( 78) AAAATACT 1 chr2L:7409722-7409842 ( 97) AAAATACT 1 chr2L:12048884-12049004 ( 94) AAAATACT 1 chr3L:21942080-21942200 ( 84) AAAATACT 1 chrX:8407744-8407864 ( 107) AAAATACT 1 chr3L:22193-22313 ( 45) AAAATACT 1 chr3R:29491064-29491184 ( 72) AAAATGCC 1 chr3R:27921077-27921197 ( 15) AAAATGCC 1 chr3L:19979784-19979904 ( 49) AAAATGCC 1 chr2R:12180235-12180355 ( 62) AAAATGCC 1 chrX:16553922-16554042 ( 79) TAAATACC 1 chr2R:15145483-15145603 ( 74) ATAATACC 1 chr2R:21719907-21720027 ( 54) ATAATACC 1 chrX:6698546-6698666 ( 57) ATAATACC 1 chr3L:21027383-21027503 ( 78) TAAATACC 1 chr2L:21148400-21148520 ( 39) TAAATACC 1 chrX:19276868-19276988 ( 88) TAAATACC 1 chr3L:7640469-7640589 ( 39) ATAATACC 1 chr3R:16273853-16273973 ( 66) GAAATACC 1 chr2L:8041000-8041120 ( 34) GAAATACC 1 chr3L:11109598-11109718 ( 23) AAAAAACC 1 chr3L:21823379-21823499 ( 25) AAAAAACC 1 chrX:1465969-1466089 ( 49) AAAAAACC 1 chrX:16884403-16884523 ( 4) AATATACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.52851 E= 8.9e-022 157 -1262 -256 -231 162 -1262 -1262 -231 146 -1262 -1262 -99 171 -1262 -1262 -1262 -268 -1262 -1262 159 162 -1262 -156 -1262 -1262 239 -1262 -1262 -1262 211 -1262 -86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 8.9e-022 0.904762 0.000000 0.031746 0.063492 0.936508 0.000000 0.000000 0.063492 0.841270 0.000000 0.000000 0.158730 1.000000 0.000000 0.000000 0.000000 0.047619 0.000000 0.000000 0.952381 0.936508 0.000000 0.063492 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.825397 0.000000 0.174603 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATACC MEME-3 regular expression -------------------------------------------------------------------------------- AAAATACC -------------------------------------------------------------------------------- Time 19.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGTATTT MEME-4 width = 8 sites = 39 llr = 350 E-value = 1.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 12::a::: pos.-specific C :::1:::: probability G :8a::::: matrix T 9::9:aaa bits 2.4 * 2.2 * 1.9 * 1.7 * ** * Relative 1.4 ** **** Entropy 1.2 ******** (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGTATTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5779916-5780036 25 3.40e-05 TAAAGGAGAA TGGTATTT GCGAATACGA chr2L:3452390-3452510 19 3.40e-05 AATGGTGTTC TGGTATTT TTGTAACACT chr3R:29933178-29933298 109 3.40e-05 CGGGGCGTTT TGGTATTT CAGG chr3R:24851535-24851655 45 3.40e-05 TCAATGCCAA TGGTATTT TGTACCGAAA chr3R:27681977-27682097 99 3.40e-05 TATTCTTGCT TGGTATTT TTAGATTTTA chr3L:7916357-7916477 103 3.40e-05 TTTCGCGCAT TGGTATTT GAAAATTTTT chr2R:23877623-23877743 48 3.40e-05 GTTATAAACT TGGTATTT TATGGGTATT chr2L:15005631-15005751 72 3.40e-05 GCGTTACATT TGGTATTT TACCAACTAT chr2R:17573398-17573518 63 3.40e-05 CACCCCTTGT TGGTATTT TCGCGTTTGT chr3L:11164923-11165043 7 3.40e-05 ATGTTG TGGTATTT TAGTTGAGTA chr3L:13997134-13997254 49 3.40e-05 TTGCGCCAAT TGGTATTT TTCTGTTTTG chr2R:12571960-12572080 73 3.40e-05 ATCGAGATTT TGGTATTT CTCAATGGCC chr3R:15268566-15268686 72 3.40e-05 TAAGGCGTTT TGGTATTT CGCACGAAAG chr3L:3042283-3042403 82 3.40e-05 AACGACAGTA TGGTATTT TTGCGTATTA chr3L:7238473-7238593 61 3.40e-05 CCGCCATTTC TGGTATTT CAGTGAATGT chrX:3799124-3799244 14 3.40e-05 TACTTTTTCA TGGTATTT ATGCATACCA chr3L:11793480-11793600 41 3.40e-05 GAGGAATTGT TGGTATTT TGTAAAGCGT chr3L:12805798-12805918 33 3.40e-05 AAAATTGTTT TGGTATTT CCTTACTTGT chr3R:27582776-27582896 17 3.40e-05 CATATAAAGT TGGTATTT CTTTCTAATC chrX:1465969-1466089 67 3.40e-05 CTAACGCATT TGGTATTT TACACGGGAA chr3R:25023183-25023303 63 3.40e-05 TTCTACGTTA TGGTATTT TTAAACGGTT chr2L:16729678-16729798 59 3.40e-05 aatatgtttt tggtattt ttgaaggctt chr3R:7150683-7150803 85 3.40e-05 GGATTTTTGG TGGTATTT CGTCAGCTCA chr2R:15682676-15682796 10 8.91e-05 TTGCTGTTT TAGTATTT TCCAGCATTT chr2R:16957418-16957538 22 8.91e-05 TATGTATTTC TAGTATTT TCCAAACGTA chr3L:16113146-16113266 28 8.91e-05 ACTTCTTTTC TAGTATTT TAATTCGGTA chr2R:16001640-16001760 61 8.91e-05 ATCATATGAT TAGTATTT CCCTGTGCCG chr3L:18745773-18745893 7 8.91e-05 AATCCA TAGTATTT TGCAGACACT chr3R:13958721-13958841 4 8.91e-05 GCT TAGTATTT TCACAAGTGT chrX:4702233-4702353 3 8.91e-05 TT TAGTATTT TTTGAAAACA chr2L:12048884-12049004 105 8.91e-05 AAATACTGAC TAGTATTT TTCGACCG chr3R:12679023-12679143 67 8.91e-05 TATTTTTTTT TAGTATTT TTTTAATTCG chr2L:18321095-18321215 72 1.10e-04 GGGGTACAGC TGGCATTT GCCATGCGCC chr2L:14334064-14334184 53 1.10e-04 TTCATTTGTT TGGCATTT TGGTGTCGTC chr2R:8891703-8891823 109 1.10e-04 AACTGCACTT TGGCATTT GTTT chr2L:13827686-13827806 92 1.42e-04 CCGCCAGCCT AGGTATTT TTGTGCGCTT chr2R:12180235-12180355 53 1.42e-04 TGAGTTTGAA AGGTATTT AAAAATGCCG chr2L:20923326-20923446 28 1.63e-04 aaccgttttt cggtattt tttcataatg chrX:927986-928106 65 1.96e-04 GGCATGTCTT TGGTATAT AATGTGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5779916-5780036 3.4e-05 24_[+4]_88 chr2L:3452390-3452510 3.4e-05 18_[+4]_94 chr3R:29933178-29933298 3.4e-05 108_[+4]_4 chr3R:24851535-24851655 3.4e-05 44_[+4]_68 chr3R:27681977-27682097 3.4e-05 98_[+4]_14 chr3L:7916357-7916477 3.4e-05 102_[+4]_10 chr2R:23877623-23877743 3.4e-05 47_[+4]_65 chr2L:15005631-15005751 3.4e-05 71_[+4]_41 chr2R:17573398-17573518 3.4e-05 62_[+4]_50 chr3L:11164923-11165043 3.4e-05 6_[+4]_106 chr3L:13997134-13997254 3.4e-05 48_[+4]_64 chr2R:12571960-12572080 3.4e-05 72_[+4]_40 chr3R:15268566-15268686 3.4e-05 71_[+4]_41 chr3L:3042283-3042403 3.4e-05 81_[+4]_31 chr3L:7238473-7238593 3.4e-05 60_[+4]_52 chrX:3799124-3799244 3.4e-05 13_[+4]_99 chr3L:11793480-11793600 3.4e-05 40_[+4]_72 chr3L:12805798-12805918 3.4e-05 32_[+4]_80 chr3R:27582776-27582896 3.4e-05 16_[+4]_96 chrX:1465969-1466089 3.4e-05 66_[+4]_46 chr3R:25023183-25023303 3.4e-05 62_[+4]_50 chr2L:16729678-16729798 3.4e-05 58_[+4]_54 chr3R:7150683-7150803 3.4e-05 84_[+4]_28 chr2R:15682676-15682796 8.9e-05 9_[+4]_103 chr2R:16957418-16957538 8.9e-05 21_[+4]_91 chr3L:16113146-16113266 8.9e-05 27_[+4]_85 chr2R:16001640-16001760 8.9e-05 60_[+4]_52 chr3L:18745773-18745893 8.9e-05 6_[+4]_106 chr3R:13958721-13958841 8.9e-05 3_[+4]_109 chrX:4702233-4702353 8.9e-05 2_[+4]_110 chr2L:12048884-12049004 8.9e-05 104_[+4]_8 chr3R:12679023-12679143 8.9e-05 66_[+4]_46 chr2L:18321095-18321215 0.00011 71_[+4]_41 chr2L:14334064-14334184 0.00011 52_[+4]_60 chr2R:8891703-8891823 0.00011 108_[+4]_4 chr2L:13827686-13827806 0.00014 91_[+4]_21 chr2R:12180235-12180355 0.00014 52_[+4]_60 chr2L:20923326-20923446 0.00016 27_[+4]_85 chrX:927986-928106 0.0002 64_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGTATTT width=8 seqs=39 chr3L:5779916-5780036 ( 25) TGGTATTT 1 chr2L:3452390-3452510 ( 19) TGGTATTT 1 chr3R:29933178-29933298 ( 109) TGGTATTT 1 chr3R:24851535-24851655 ( 45) TGGTATTT 1 chr3R:27681977-27682097 ( 99) TGGTATTT 1 chr3L:7916357-7916477 ( 103) TGGTATTT 1 chr2R:23877623-23877743 ( 48) TGGTATTT 1 chr2L:15005631-15005751 ( 72) TGGTATTT 1 chr2R:17573398-17573518 ( 63) TGGTATTT 1 chr3L:11164923-11165043 ( 7) TGGTATTT 1 chr3L:13997134-13997254 ( 49) TGGTATTT 1 chr2R:12571960-12572080 ( 73) TGGTATTT 1 chr3R:15268566-15268686 ( 72) TGGTATTT 1 chr3L:3042283-3042403 ( 82) TGGTATTT 1 chr3L:7238473-7238593 ( 61) TGGTATTT 1 chrX:3799124-3799244 ( 14) TGGTATTT 1 chr3L:11793480-11793600 ( 41) TGGTATTT 1 chr3L:12805798-12805918 ( 33) TGGTATTT 1 chr3R:27582776-27582896 ( 17) TGGTATTT 1 chrX:1465969-1466089 ( 67) TGGTATTT 1 chr3R:25023183-25023303 ( 63) TGGTATTT 1 chr2L:16729678-16729798 ( 59) TGGTATTT 1 chr3R:7150683-7150803 ( 85) TGGTATTT 1 chr2R:15682676-15682796 ( 10) TAGTATTT 1 chr2R:16957418-16957538 ( 22) TAGTATTT 1 chr3L:16113146-16113266 ( 28) TAGTATTT 1 chr2R:16001640-16001760 ( 61) TAGTATTT 1 chr3L:18745773-18745893 ( 7) TAGTATTT 1 chr3R:13958721-13958841 ( 4) TAGTATTT 1 chrX:4702233-4702353 ( 3) TAGTATTT 1 chr2L:12048884-12049004 ( 105) TAGTATTT 1 chr3R:12679023-12679143 ( 67) TAGTATTT 1 chr2L:18321095-18321215 ( 72) TGGCATTT 1 chr2L:14334064-14334184 ( 53) TGGCATTT 1 chr2R:8891703-8891823 ( 109) TGGCATTT 1 chr2L:13827686-13827806 ( 92) AGGTATTT 1 chr2R:12180235-12180355 ( 53) AGGTATTT 1 chr2L:20923326-20923446 ( 28) CGGTATTT 1 chrX:927986-928106 ( 65) TGGTATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.72248 E= 1.5e-009 -257 -289 -1193 155 -40 -1193 203 -1193 -1193 -1193 241 -1193 -1193 -131 -1193 155 171 -1193 -1193 -1193 -1193 -1193 -1193 166 -357 -1193 -1193 162 -1193 -1193 -1193 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.5e-009 0.051282 0.025641 0.000000 0.923077 0.230769 0.000000 0.769231 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.923077 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.025641 0.000000 0.000000 0.974359 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTATTT MEME-4 regular expression -------------------------------------------------------------------------------- T[GA]GTATTT -------------------------------------------------------------------------------- Time 25.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGSCGCC MEME-5 width = 8 sites = 11 llr = 117 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::4a:7a probability G :3a6:a3: matrix T a7:::::: bits 2.4 * ** * 2.2 * ** * 1.9 * ** * 1.7 * * ** * Relative 1.4 * ****** Entropy 1.2 * ****** (15.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCGCC consensus G C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23877623-23877743 20 4.62e-06 TATTCAAATT TTGGCGCC CTAGAAAGCC chr2L:15005631-15005751 24 4.62e-06 GAATTCAAAT TTGGCGCC AAGCTAATGT chrX:8442317-8442437 88 4.62e-06 CGAAAGCTTT TTGGCGCC aatttggtta chr3L:10882771-10882891 26 4.62e-06 TCAAATAATG TTGGCGCC CAAAAAGTGT chr3L:12534093-12534213 23 7.37e-06 TCCTGCATCG TGGGCGCC GTGGGCCTCA chr4:796695-796815 47 7.37e-06 ggcttcagtc tgggcgcc acaaagtgaa chr2R:8627822-8627942 68 1.21e-05 GGAATCCTGA TTGCCGCC CAATGCGAGT chr2L:13827686-13827806 79 1.21e-05 CTCCGTAAGA TTGCCGCC AGCCTAGGTA chr2L:16732056-16732176 84 2.21e-05 GGCCGTATGC TGGGCGGC TAAAAATACC chr3L:10463087-10463207 14 2.67e-05 CACTTTTTTA TTGCCGGC CAAAAAATCC chr3L:11164923-11165043 68 2.67e-05 TTTCCACGCG TTGCCGGC TGGTTGAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23877623-23877743 4.6e-06 19_[+5]_93 chr2L:15005631-15005751 4.6e-06 23_[+5]_89 chrX:8442317-8442437 4.6e-06 87_[+5]_25 chr3L:10882771-10882891 4.6e-06 25_[+5]_87 chr3L:12534093-12534213 7.4e-06 22_[+5]_90 chr4:796695-796815 7.4e-06 46_[+5]_66 chr2R:8627822-8627942 1.2e-05 67_[+5]_45 chr2L:13827686-13827806 1.2e-05 78_[+5]_34 chr2L:16732056-16732176 2.2e-05 83_[+5]_29 chr3L:10463087-10463207 2.7e-05 13_[+5]_99 chr3L:11164923-11165043 2.7e-05 67_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGSCGCC width=8 seqs=11 chr2R:23877623-23877743 ( 20) TTGGCGCC 1 chr2L:15005631-15005751 ( 24) TTGGCGCC 1 chrX:8442317-8442437 ( 88) TTGGCGCC 1 chr3L:10882771-10882891 ( 26) TTGGCGCC 1 chr3L:12534093-12534213 ( 23) TGGGCGCC 1 chr4:796695-796815 ( 47) TGGGCGCC 1 chr2R:8627822-8627942 ( 68) TTGCCGCC 1 chr2L:13827686-13827806 ( 79) TTGCCGCC 1 chr2L:16732056-16732176 ( 84) TGGGCGGC 1 chr3L:10463087-10463207 ( 14) TTGCCGGC 1 chr3L:11164923-11165043 ( 68) TTGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 2.5e+003 -1010 -1010 -1010 166 -1010 -1010 54 120 -1010 -1010 241 -1010 -1010 93 176 -1010 -1010 239 -1010 -1010 -1010 -1010 241 -1010 -1010 193 54 -1010 -1010 239 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.5e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCGCC MEME-5 regular expression -------------------------------------------------------------------------------- T[TG]G[GC]CG[CG]C -------------------------------------------------------------------------------- Time 31.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7150683-7150803 1.89e-02 84_[+4(3.40e-05)]_28 chr3R:27272378-27272498 3.38e-01 120 chr2L:16729678-16729798 1.01e-02 58_[+4(3.40e-05)]_54 chr2R:11368142-11368262 1.56e-03 77_[+1(7.24e-06)]_35 chr3R:9748025-9748145 1.12e-01 120 chr2R:9822933-9823053 1.92e-03 14_[+2(2.90e-05)]_16_[+3(3.04e-05)]_\ 74 chr2L:10268748-10268868 1.33e-03 4_[+3(3.04e-05)]_81_[+1(3.50e-05)]_\ 19 chr3L:3461243-3461363 2.15e-03 36_[+3(3.04e-05)]_33_[+1(7.24e-06)]_\ 35 chr2R:16283102-16283222 6.76e-02 [+2(7.38e-06)]_112 chrX:2610310-2610430 1.18e-03 20_[+2(2.90e-05)]_38_[+3(6.20e-05)]_\ 25_[+3(6.20e-05)]_13 chr3R:25023183-25023303 8.30e-03 62_[+4(3.40e-05)]_17_[+1(3.50e-05)]_\ 25 chr3L:22193-22313 3.15e-02 120 chr2L:5058222-5058342 1.31e-02 19_[+2(7.38e-06)]_93 chr3L:16782932-16783052 2.42e-02 35_[+2(7.38e-06)]_77 chr3R:24922393-24922513 1.40e-01 86_[+1(3.50e-05)]_26 chr3R:10767752-10767872 3.58e-02 120 chr3L:4322210-4322330 4.44e-02 120 chrX:19261285-19261405 9.32e-01 120 chr3L:7640469-7640589 2.50e-01 120 chr2L:10210654-10210774 2.81e-02 13_[+2(7.38e-06)]_99 chr2L:11004451-11004571 1.06e-01 120 chrX:17302323-17302443 1.08e-01 87_[+4(8.91e-05)]_13_[+4(8.91e-05)]_\ 4 chrX:8407744-8407864 1.40e-01 120 chr3R:12679023-12679143 6.40e-02 66_[+4(8.91e-05)]_46 chrX:1465969-1466089 3.29e-04 66_[+4(3.40e-05)]_46 chrX:2617518-2617638 3.10e-02 [+3(3.04e-05)]_17_[+3(3.04e-05)]_42_\ [+3(3.04e-05)]_17_[+3(3.04e-05)]_12 chr3L:12149176-12149296 1.19e-01 120 chr3R:25071022-25071142 1.72e-02 93_[+1(1.16e-05)]_19 chr3L:21942080-21942200 2.91e-01 120 chr3L:4003382-4003502 1.79e-02 76_[+1(7.24e-06)]_36 chrX:16587785-16587905 3.14e-01 120 chr2L:8041000-8041120 3.75e-03 [+5(3.68e-05)]_112 chr2L:9657384-9657504 3.70e-01 120 chr3L:18820973-18821093 3.24e-02 77_[+2(8.42e-05)]_35 chrX:13667814-13667934 5.81e-01 120 chr2R:18972825-18972945 4.08e-01 120 chr3L:5779609-5779729 8.84e-01 120 chr3R:12704999-12705119 5.18e-03 91_[+1(7.24e-06)]_21 chr2R:8891703-8891823 7.16e-02 120 chrX:19276868-19276988 5.64e-04 20_[+2(7.38e-06)]_92 chr3R:27582776-27582896 1.70e-03 16_[+4(3.40e-05)]_37_[+1(7.24e-06)]_\ 51 chrX:17629449-17629569 2.65e-01 81_[+3(6.20e-05)]_31 chr3R:20617805-20617925 7.05e-03 71_[+1(7.24e-06)]_41 chrX:21605241-21605361 5.84e-03 62_[+3(3.04e-05)]_50 chrX:16884403-16884523 6.35e-01 120 chr2L:21148400-21148520 2.05e-03 8_[+2(7.38e-06)]_79_[+2(5.60e-05)]_\ 17 chr3L:12805798-12805918 1.14e-01 32_[+4(3.40e-05)]_45_[+4(8.91e-05)]_\ 27 chr2R:22073343-22073463 2.32e-04 31_[+2(7.38e-06)]_16_[+3(3.04e-05)]_\ 57 chr3L:11793480-11793600 2.52e-03 40_[+4(3.40e-05)]_17_[+1(7.24e-06)]_\ 47 chr3R:20581512-20581632 1.09e-01 30_[+2(2.90e-05)]_82 chr2R:16138580-16138700 5.13e-01 120 chr3L:9972208-9972328 5.33e-02 110_[+1(7.01e-05)]_2 chr2L:20926102-20926222 6.53e-03 38_[+2(1.19e-05)]_74 chr2L:21725-21845 1.65e-03 18_[+2(7.38e-06)]_53_[+3(3.04e-05)]_\ 33 chr3R:8343483-8343603 2.71e-02 24_[+2(7.38e-06)]_88 chr3R:16273853-16273973 6.03e-04 24_[+2(7.38e-06)]_88 chr3R:29816414-29816534 4.09e-03 80_[+1(3.94e-05)]_32 chr3L:4277883-4278003 1.39e-02 82_[+1(7.24e-06)]_30 chr3R:27228499-27228619 1.76e-01 120 chr3L:12205985-12206105 3.52e-04 24_[+2(7.38e-06)]_16_[+3(6.20e-05)]_\ 64 chr3L:7369734-7369854 3.48e-03 107_[+1(1.91e-05)]_5 chrX:11599733-11599853 4.05e-02 86_[+1(7.24e-06)]_26 chr3L:21027383-21027503 2.31e-03 21_[+2(5.60e-05)]_91 chr3R:23929259-23929379 7.83e-01 120 chr2L:292325-292445 9.14e-02 85_[+1(4.40e-05)]_27 chr3R:25235498-25235618 5.00e-02 18_[+2(7.23e-05)]_94 chr3R:11230518-11230638 3.24e-01 120 chr3L:12399295-12399415 3.94e-05 21_[+2(1.19e-05)]_10_[+3(3.04e-05)]_\ 73 chr3L:4626658-4626778 1.65e-02 76_[+1(7.24e-06)]_36 chr3L:10225234-10225354 6.69e-03 27_[+3(3.04e-05)]_85 chr3L:1831906-1832026 8.84e-01 120 chr3R:20635349-20635469 3.66e-02 49_[+1(7.24e-06)]_63 chr3L:21267927-21268047 2.91e-02 85_[+3(3.04e-05)]_27 chrX:3799124-3799244 1.34e-01 13_[+4(3.40e-05)]_99 chrX:16800673-16800793 7.82e-04 10_[+2(7.38e-06)]_38_[+3(6.20e-05)]_\ 56 chr2L:10266633-10266753 1.96e-02 80_[+1(3.94e-05)]_32 chr3L:17245706-17245826 1.61e-01 120 chr2R:14993795-14993915 4.02e-04 32_[+2(6.03e-05)]_56_[+3(3.04e-05)]_\ 16 chrX:6050384-6050504 6.22e-02 68_[+1(7.24e-06)]_44 chr2R:12636128-12636248 9.90e-05 1_[+2(7.38e-06)]_69_[+1(1.16e-05)]_\ 34 chr3L:15987786-15987906 1.15e-01 22_[+2(3.61e-05)]_90 chr2R:12180235-12180355 4.35e-03 120 chr2R:19486747-19486867 4.43e-01 120 chrX:22482025-22482145 9.71e-02 20_[+3(3.04e-05)]_92 chr3R:8561681-8561801 4.97e-02 57_[+2(3.61e-05)]_55 chr2L:14334064-14334184 1.30e-02 77_[+1(9.41e-05)]_35 chr2R:7924900-7925020 3.36e-02 68_[+2(7.38e-06)]_44 chr2R:8625377-8625497 2.64e-03 81_[+1(1.91e-05)]_31 chr2R:23811953-23812073 2.64e-02 16_[+2(3.61e-05)]_96 chr2L:13790877-13790997 8.27e-03 79_[+1(1.16e-05)]_33 chr2L:13827686-13827806 3.34e-03 78_[+5(1.21e-05)]_34 chr2L:10210857-10210977 7.65e-01 120 chr3R:27165608-27165728 4.64e-01 120 chrX:10929766-10929886 8.93e-01 120 chrX:20393728-20393848 5.38e-04 17_[+2(1.66e-05)]_44_[+1(9.41e-05)]_\ 43 chr2R:11293135-11293255 1.31e-03 43_[+3(3.04e-05)]_45_[+1(3.50e-05)]_\ 16 chr2L:16902162-16902282 3.59e-04 50_[+2(1.66e-05)]_14_[+3(3.04e-05)]_\ 40 chr2R:24775205-24775325 2.46e-03 37_[+2(7.38e-06)]_16_[+3(3.04e-05)]_\ 41_[+3(3.04e-05)]_2 chr3L:3169254-3169374 1.36e-02 38_[+1(7.24e-06)]_74 chrX:23096666-23096786 6.17e-03 79_[+3(6.20e-05)]_33 chr3R:9015239-9015359 1.44e-02 98_[+2(1.19e-05)]_14 chr3L:10882771-10882891 2.09e-04 25_[+5(4.62e-06)]_87 chr2R:21481524-21481644 2.28e-01 16_[+1(7.01e-05)]_96 chr3L:1500036-1500156 1.36e-01 63_[+1(3.50e-05)]_49 chr2R:17563513-17563633 2.61e-02 73_[+1(7.24e-06)]_39 chr2R:16867663-16867783 2.19e-02 75_[+1(3.50e-05)]_37 chr2L:810495-810615 3.04e-02 120 chrX:11349004-11349124 8.43e-01 120 chr2R:20319068-20319188 1.06e-02 76_[+1(9.41e-05)]_36 chr3R:24357896-24358016 4.38e-04 35_[+2(1.66e-05)]_40_[+1(1.91e-05)]_\ 29 chr3L:9047339-9047459 8.10e-01 120 chrX:15788766-15788886 7.23e-03 91_[+1(7.24e-06)]_21 chr2L:2757555-2757675 5.44e-01 120 chr2L:12048884-12049004 1.12e-04 65_[+2(7.38e-06)]_31_[+4(8.91e-05)]_\ 8 chr3L:19261370-19261490 2.98e-02 57_[+1(7.24e-06)]_55 chr3L:7238473-7238593 3.23e-04 60_[+4(3.40e-05)]_18_[+1(1.91e-05)]_\ 26 chr3L:3042283-3042403 3.75e-04 81_[+4(3.40e-05)]_11_[+1(7.24e-06)]_\ 12 chrX:927986-928106 2.73e-02 100_[+5(7.71e-05)]_12 chr2L:20923326-20923446 7.26e-02 120 chr3R:15268566-15268686 1.66e-04 71_[+4(3.40e-05)]_41 chr3L:12534506-12534626 1.74e-01 120 chrX:4627313-4627433 2.78e-05 13_[+2(1.66e-05)]_29_[+1(1.16e-05)]_\ 62 chr4:796695-796815 1.86e-02 46_[+5(7.37e-06)]_66 chr2L:7409722-7409842 2.28e-03 72_[+2(7.38e-06)]_40 chrX:15859331-15859451 3.37e-02 34_[+2(4.83e-05)]_78 chr3L:17433369-17433489 4.96e-01 120 chr2R:25190087-25190207 8.51e-02 120 chrX:16695113-16695233 1.22e-01 108_[+3(3.04e-05)]_4 chr2R:10897816-10897936 5.33e-02 35_[+2(7.38e-06)]_77 chr3L:21635266-21635386 2.39e-01 120 chr2L:9673083-9673203 2.07e-01 120 chrX:18379884-18380004 1.52e-01 22_[+3(3.04e-05)]_90 chr4:775412-775532 1.09e-01 120 chr3R:22492889-22493009 1.08e-01 120 chr3R:17040132-17040252 2.73e-02 84_[+2(2.90e-05)]_28 chrX:16886490-16886610 2.59e-01 101_[+3(6.20e-05)]_11 chr2R:12571960-12572080 5.40e-04 72_[+4(3.40e-05)]_40 chr2R:24875820-24875940 3.29e-03 37_[+2(7.23e-05)]_31_[+3(6.20e-05)]_\ 36 chr3L:13997134-13997254 2.03e-02 48_[+4(3.40e-05)]_64 chr3L:11164923-11165043 3.29e-03 6_[+4(3.40e-05)]_53_[+5(2.67e-05)]_\ 45 chrX:18657256-18657376 1.36e-03 26_[+2(8.42e-05)]_39_[+1(7.24e-06)]_\ 39 chr2L:18321095-18321215 5.00e-03 4_[+2(7.38e-06)]_30_[+2(7.38e-06)]_\ 70 chr3R:5555021-5555141 3.13e-02 15_[+2(7.23e-05)]_97 chr2L:6127627-6127747 1.15e-03 18_[+2(7.38e-06)]_94 chr2R:12431063-12431183 4.16e-03 13_[+2(2.90e-05)]_60_[+1(3.50e-05)]_\ 31 chr3L:5897399-5897519 2.06e-02 50_[+2(7.38e-06)]_62 chr2L:13641186-13641306 5.98e-02 88_[+3(3.04e-05)]_24 chr3L:1331653-1331773 3.37e-01 120 chr3R:27947992-27948112 1.58e-03 13_[+2(3.61e-05)]_16_[+3(3.04e-05)]_\ 15_[+3(3.04e-05)]_52 chr2L:10206903-10207023 6.37e-03 76_[+3(3.04e-05)]_10_[+3(3.04e-05)]_\ 18 chr3R:4484990-4485110 2.32e-02 30_[+1(7.24e-06)]_82 chr3L:8180819-8180939 6.15e-02 89_[+1(4.40e-05)]_23 chrX:8442317-8442437 2.08e-05 12_[+2(1.19e-05)]_67_[+5(4.62e-06)]_\ 25 chrX:10212772-10212892 8.07e-02 [+2(5.60e-05)]_112 chr3R:30000441-30000561 1.05e-02 87_[+1(7.01e-05)]_25 chrX:4702233-4702353 3.68e-03 2_[+4(8.91e-05)]_35_[+1(7.24e-06)]_\ 67 chr3R:13958721-13958841 6.43e-06 3_[+4(8.91e-05)]_6_[+2(1.66e-05)]_\ 54_[+3(3.04e-05)]_33 chr3R:30150723-30150843 6.93e-01 120 chr3L:1970296-1970416 3.62e-01 120 chr3R:27695168-27695288 1.60e-02 28_[+2(7.38e-06)]_84 chr2L:472955-473075 1.35e-02 63_[+1(7.24e-06)]_49 chr2R:17573398-17573518 3.03e-03 43_[+1(7.24e-06)]_11_[+4(3.40e-05)]_\ 50 chr2L:6000173-6000293 4.75e-03 63_[+1(7.24e-06)]_49 chrX:22540352-22540472 6.97e-04 35_[+2(1.19e-05)]_38_[+3(3.04e-05)]_\ 31 chr2R:9400466-9400586 8.51e-01 120 chr2L:15007799-15007919 5.33e-02 29_[+1(4.40e-05)]_83 chr3L:18745773-18745893 1.57e-03 6_[+4(8.91e-05)]_59_[+1(7.24e-06)]_\ 39 chr2R:12180437-12180557 2.40e-01 120 chr2L:11004747-11004867 1.69e-02 38_[+3(6.20e-05)]_29_[+1(3.50e-05)]_\ 37 chr3L:19583570-19583690 5.33e-02 26_[+2(9.64e-05)]_86 chr2L:20223087-20223207 5.32e-01 120 chr2L:15005631-15005751 4.65e-04 23_[+5(4.62e-06)]_40_[+4(3.40e-05)]_\ 41 chr2R:11360112-11360232 7.38e-01 120 chr3R:27679153-27679273 3.99e-01 120 chrX:22444663-22444783 9.93e-02 92_[+1(3.50e-05)]_20 chrX:16942866-16942986 3.07e-02 [+2(2.90e-05)]_112 chr2L:2954548-2954668 3.07e-02 120 chr3R:5570713-5570833 4.05e-02 86_[+1(4.40e-05)]_26 chr3L:12745274-12745394 2.65e-02 71_[+1(7.24e-06)]_41 chr3L:21823379-21823499 4.37e-03 82_[+1(1.16e-05)]_30 chr3R:8344354-8344474 1.92e-03 59_[+1(7.24e-06)]_53 chr2L:16910353-16910473 7.14e-02 120 chrX:476897-477017 6.90e-02 120 chr2R:11442401-11442521 4.55e-01 120 chr2R:13980095-13980215 4.32e-02 106_[+1(7.24e-06)]_6 chr3L:19979784-19979904 1.55e-01 120 chr3R:31617921-31618041 3.56e-04 62_[+1(7.24e-06)]_50 chr2L:20926316-20926436 1.21e-01 45_[+1(3.50e-05)]_67 chr3R:27921077-27921197 3.51e-01 120 chr3R:29491064-29491184 1.01e-04 52_[+2(7.38e-06)]_60 chrX:15983699-15983819 3.59e-01 120 chr3L:16144029-16144149 5.41e-03 66_[+2(1.66e-05)]_46 chrX:12668104-12668224 6.70e-02 101_[+1(1.16e-05)]_11 chr2L:16262045-16262165 7.66e-02 90_[+1(7.24e-06)]_22 chr3R:15223103-15223223 3.69e-03 53_[+2(7.38e-06)]_59 chrX:16940810-16940930 1.05e-03 49_[+2(7.38e-06)]_17_[+3(3.04e-05)]_\ 38 chr2R:23877623-23877743 1.92e-04 19_[+5(4.62e-06)]_20_[+4(3.40e-05)]_\ 65 chrX:16800872-16800992 1.51e-01 120 chr3L:212632-212752 8.36e-03 25_[+2(1.19e-05)]_87 chr2L:16732056-16732176 6.91e-05 69_[+2(6.03e-05)]_6_[+5(2.21e-05)]_\ 2_[+3(3.04e-05)]_19 chr2R:21624847-21624967 3.03e-01 120 chrX:9247221-9247341 2.00e-01 120 chrX:6698546-6698666 5.87e-03 32_[+2(3.61e-05)]_80 chr2L:20835622-20835742 8.71e-01 120 chr3L:1970094-1970214 5.72e-04 13_[+2(7.38e-06)]_99 chr3L:7916357-7916477 4.85e-04 42_[+2(1.66e-05)]_52_[+4(3.40e-05)]_\ 10 chrX:16886713-16886833 4.20e-02 56_[+3(3.04e-05)]_56 chr3L:11998093-11998213 1.16e-03 25_[+2(7.38e-06)]_60_[+3(3.04e-05)]_\ 19 chr2L:9253058-9253178 3.25e-03 53_[+2(5.60e-05)]_59 chr3R:16272905-16273025 3.32e-01 120 chr2R:9237859-9237979 7.95e-01 120 chr3L:11109598-11109718 3.19e-03 92_[+1(7.24e-06)]_20 chr3L:21832202-21832322 6.22e-02 120 chr2L:10344345-10344465 2.50e-01 120 chr2L:18864-18984 2.71e-02 54_[+2(7.38e-06)]_58 chr3R:22741082-22741202 2.19e-04 36_[+2(7.38e-06)]_34_[+1(1.16e-05)]_\ 34 chrX:15940987-15941107 4.94e-01 120 chrX:19695034-19695154 2.74e-03 8_[+2(4.83e-05)]_48_[+3(6.20e-05)]_\ 48 chrX:15769598-15769718 2.10e-02 62_[+1(7.24e-06)]_50 chr3R:27681977-27682097 9.62e-04 21_[+2(7.38e-06)]_69_[+4(3.40e-05)]_\ 14 chr2R:16001640-16001760 2.92e-03 60_[+4(8.91e-05)]_37_[+1(7.24e-06)]_\ 7 chr3L:5777272-5777392 9.72e-03 49_[+2(2.90e-05)]_63 chr3R:24851535-24851655 8.13e-05 44_[+4(3.40e-05)]_11_[+1(7.24e-06)]_\ 49 chr2R:17670033-17670153 1.03e-01 55_[+2(7.23e-05)]_57 chr3L:12267427-12267547 2.08e-04 27_[+2(7.38e-06)]_85 chr3L:16113146-16113266 2.24e-04 27_[+4(8.91e-05)]_30_[+5(6.20e-05)]_\ 3_[+1(7.24e-06)]_36 chr2R:21719907-21720027 3.10e-01 120 chr2R:15145483-15145603 4.73e-04 30_[+2(3.61e-05)]_82 chrX:8721653-8721773 3.01e-01 120 chr3L:18622232-18622352 6.69e-01 120 chr2R:7445711-7445831 3.42e-02 46_[+2(7.38e-06)]_66 chr3L:12534093-12534213 1.71e-03 22_[+5(7.37e-06)]_90 chr3R:15278581-15278701 6.60e-04 76_[+1(7.01e-05)]_17_[+2(7.38e-06)]_\ 11 chr2L:18612218-18612338 4.44e-03 23_[+2(2.90e-05)]_49_[+3(3.04e-05)]_\ 32 chr2R:9965006-9965126 4.61e-02 57_[+2(1.19e-05)]_55 chr2R:16957418-16957538 3.15e-03 21_[+4(8.91e-05)]_13_[+1(7.24e-06)]_\ 70 chr2R:8627822-8627942 1.39e-02 67_[+5(1.21e-05)]_45 chrX:7959470-7959590 8.44e-01 120 chr2R:23752654-23752774 7.78e-02 106_[+1(9.41e-05)]_6 chr3R:29933178-29933298 4.06e-02 108_[+4(3.40e-05)]_4 chr3L:10463087-10463207 3.07e-02 13_[+5(2.67e-05)]_99 chr2R:15682676-15682796 2.57e-03 9_[+4(8.91e-05)]_16_[+1(7.24e-06)]_\ 79 chr2L:3452390-3452510 1.77e-04 18_[+4(3.40e-05)]_49_[+1(7.24e-06)]_\ 37 chrX:16553922-16554042 4.45e-01 120 chr2R:24876025-24876145 1.20e-01 120 chr3L:16121933-16122053 3.00e-03 41_[+2(7.38e-06)]_71 chr2L:11990818-11990938 1.46e-02 54_[+1(5.10e-05)]_26_[+1(1.91e-05)]_\ 24 chr3L:21529304-21529424 9.07e-02 120 chr2L:10327904-10328024 2.72e-02 52_[+2(2.90e-05)]_60 chr3L:5779916-5780036 5.21e-04 24_[+4(3.40e-05)]_88 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************