******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/gem.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:21367415-21367535 1.0000 120 chr3L:3080430-3080550 1.0000 120 chr2R:22537531-22537651 1.0000 120 chr2R:16009205-16009325 1.0000 120 chr2L:1125553-1125673 1.0000 120 chr3L:18817746-18817866 1.0000 120 chrX:16907155-16907275 1.0000 120 chr2R:11628158-11628278 1.0000 120 chr2L:8086820-8086940 1.0000 120 chr3L:3409701-3409821 1.0000 120 chr2R:12926539-12926659 1.0000 120 chr2L:12436660-12436780 1.0000 120 chr2L:12024329-12024449 1.0000 120 chr2R:18531153-18531273 1.0000 120 chr3L:110093-110213 1.0000 120 chr2L:6595171-6595291 1.0000 120 chr3L:7592276-7592396 1.0000 120 chr3R:15366986-15367106 1.0000 120 chrX:3109025-3109145 1.0000 120 chr2R:22539303-22539423 1.0000 120 chr3R:20951049-20951169 1.0000 120 chr3L:7861922-7862042 1.0000 120 chr2R:16847073-16847193 1.0000 120 chrX:7095020-7095140 1.0000 120 chr3R:16349277-16349397 1.0000 120 chr2R:3942497-3942617 1.0000 120 chrX:9350424-9350544 1.0000 120 chr2R:13996705-13996825 1.0000 120 chr2L:2374078-2374198 1.0000 120 chr3L:3786930-3787050 1.0000 120 chr3L:18227469-18227589 1.0000 120 chr2L:16255296-16255416 1.0000 120 chr3L:19073987-19074107 1.0000 120 chr2R:5128323-5128443 1.0000 120 chrX:13109845-13109965 1.0000 120 chr2L:7150901-7151021 1.0000 120 chr3L:18402695-18402815 1.0000 120 chr3L:14961152-14961272 1.0000 120 chr3L:19338404-19338524 1.0000 120 chr3L:2651925-2652045 1.0000 120 chr3R:11663622-11663742 1.0000 120 chrX:8445011-8445131 1.0000 120 chr3L:18996845-18996965 1.0000 120 chr3L:11467131-11467251 1.0000 120 chr3R:5503987-5504107 1.0000 120 chr2R:5496113-5496233 1.0000 120 chr2L:18694859-18694979 1.0000 120 chr2R:16581770-16581890 1.0000 120 chrX:14840637-14840757 1.0000 120 chr3L:17532330-17532450 1.0000 120 chr2L:1218168-1218288 1.0000 120 chr2R:16846012-16846132 1.0000 120 chr3L:16045455-16045575 1.0000 120 chr3L:19088009-19088129 1.0000 120 chr3R:13446641-13446761 1.0000 120 chrX:3740423-3740543 1.0000 120 chr2R:13474989-13475109 1.0000 120 chr2R:5122256-5122376 1.0000 120 chr2L:7492051-7492171 1.0000 120 chr2R:6219982-6220102 1.0000 120 chr3R:9783355-9783475 1.0000 120 chr3R:16510312-16510432 1.0000 120 chr2L:14252572-14252692 1.0000 120 chr3L:18297494-18297614 1.0000 120 chr3L:10893499-10893619 1.0000 120 chr2R:25257012-25257132 1.0000 120 chr2R:12020601-12020721 1.0000 120 chrX:3455539-3455659 1.0000 120 chr3L:3544401-3544521 1.0000 120 chr3L:18290488-18290608 1.0000 120 chr3L:18102181-18102301 1.0000 120 chr3R:9344925-9345045 1.0000 120 chr3R:7591329-7591449 1.0000 120 chr2R:8734626-8734746 1.0000 120 chr3R:25184154-25184274 1.0000 120 chr2L:20808307-20808427 1.0000 120 chr3L:10767301-10767421 1.0000 120 chr3L:16840634-16840754 1.0000 120 chr3L:4603597-4603717 1.0000 120 chr2L:8101085-8101205 1.0000 120 chr2L:16869142-16869262 1.0000 120 chr2R:22677958-22678078 1.0000 120 chr2R:8759565-8759685 1.0000 120 chr3R:21612962-21613082 1.0000 120 chr2R:24139208-24139328 1.0000 120 chr3R:6414894-6415014 1.0000 120 chr3L:21047109-21047229 1.0000 120 chr2L:11341094-11341214 1.0000 120 chr3L:16054275-16054395 1.0000 120 chr2R:11602027-11602147 1.0000 120 chr3L:10428238-10428358 1.0000 120 chr3L:9695746-9695866 1.0000 120 chr3R:29004998-29005118 1.0000 120 chr3R:12562176-12562296 1.0000 120 chr2R:7241744-7241864 1.0000 120 chr2L:8080794-8080914 1.0000 120 chrX:3019755-3019875 1.0000 120 chr3R:16801189-16801309 1.0000 120 chr3R:25445629-25445749 1.0000 120 chr3L:10697183-10697303 1.0000 120 chr3R:21276324-21276444 1.0000 120 chrX:12937957-12938077 1.0000 120 chr3R:13907825-13907945 1.0000 120 chr2R:14161290-14161410 1.0000 120 chr2L:18484825-18484945 1.0000 120 chr2L:10543546-10543666 1.0000 120 chr3R:18438907-18439027 1.0000 120 chr2R:19860387-19860507 1.0000 120 chr2L:14024847-14024967 1.0000 120 chr3R:13799723-13799843 1.0000 120 chr2R:15155053-15155173 1.0000 120 chr3L:10951211-10951331 1.0000 120 chr3L:18349413-18349533 1.0000 120 chr3L:13356167-13356287 1.0000 120 chr3R:10449112-10449232 1.0000 120 chr2L:1428464-1428584 1.0000 120 chr2L:2905164-2905284 1.0000 120 chr2R:21364794-21364914 1.0000 120 chr3R:28904307-28904427 1.0000 120 chr2L:13876789-13876909 1.0000 120 chr2L:3587438-3587558 1.0000 120 chr2L:7293579-7293699 1.0000 120 chr3L:11291602-11291722 1.0000 120 chr3R:8867857-8867977 1.0000 120 chrX:17782169-17782289 1.0000 120 chr3L:6817105-6817225 1.0000 120 chr2R:12727685-12727805 1.0000 120 chrX:14679303-14679423 1.0000 120 chr2L:3851450-3851570 1.0000 120 chr2R:20257437-20257557 1.0000 120 chr3R:23969557-23969677 1.0000 120 chr2R:14971163-14971283 1.0000 120 chr3R:14095552-14095672 1.0000 120 chr2R:14305244-14305364 1.0000 120 chr3R:26117779-26117899 1.0000 120 chr3L:5926059-5926179 1.0000 120 chr3L:10428876-10428996 1.0000 120 chr3R:8955013-8955133 1.0000 120 chr3R:26014371-26014491 1.0000 120 chr2L:14245606-14245726 1.0000 120 chr3R:31704670-31704790 1.0000 120 chrX:12225413-12225533 1.0000 120 chr3L:6885759-6885879 1.0000 120 chr3L:3873176-3873296 1.0000 120 chr3L:9042786-9042906 1.0000 120 chr3L:19216538-19216658 1.0000 120 chr3L:14363207-14363327 1.0000 120 chr3L:3437266-3437386 1.0000 120 chrX:14634846-14634966 1.0000 120 chr2L:11331804-11331924 1.0000 120 chr2R:14803412-14803532 1.0000 120 chr3R:12406346-12406466 1.0000 120 chrX:19348935-19349055 1.0000 120 chr3R:8469819-8469939 1.0000 120 chrX:14743883-14744003 1.0000 120 chrX:16580100-16580220 1.0000 120 chr2L:9564670-9564790 1.0000 120 chr3R:15652735-15652855 1.0000 120 chr2L:17588773-17588893 1.0000 120 chr3L:19899031-19899151 1.0000 120 chr3R:23921818-23921938 1.0000 120 chrX:10573648-10573768 1.0000 120 chr3R:10641409-10641529 1.0000 120 chr3R:21420055-21420175 1.0000 120 chr2R:14357269-14357389 1.0000 120 chr3R:6791352-6791472 1.0000 120 chr3L:18114060-18114180 1.0000 120 chr2R:10123669-10123789 1.0000 120 chrX:13764511-13764631 1.0000 120 chr3R:19014921-19015041 1.0000 120 chr3R:23387071-23387191 1.0000 120 chr3R:11852097-11852217 1.0000 120 chr3L:11398759-11398879 1.0000 120 chr2L:827644-827764 1.0000 120 chr3L:20276762-20276882 1.0000 120 chr2L:11199235-11199355 1.0000 120 chr2L:17747249-17747369 1.0000 120 chr3L:9508820-9508940 1.0000 120 chr2L:7270411-7270531 1.0000 120 chr3R:10520647-10520767 1.0000 120 chr2L:7395930-7396050 1.0000 120 chr2R:23578537-23578657 1.0000 120 chr2L:9206540-9206660 1.0000 120 chr2R:10103791-10103911 1.0000 120 chrX:11081356-11081476 1.0000 120 chr2L:8746388-8746508 1.0000 120 chr3L:10745721-10745841 1.0000 120 chr2R:21527445-21527565 1.0000 120 chrX:19225010-19225130 1.0000 120 chr2R:18691574-18691694 1.0000 120 chr3L:3983530-3983650 1.0000 120 chr2R:21709658-21709778 1.0000 120 chr2L:15442332-15442452 1.0000 120 chr3R:16223796-16223916 1.0000 120 chr3R:11617516-11617636 1.0000 120 chr3R:9237918-9238038 1.0000 120 chr3L:10350867-10350987 1.0000 120 chr3R:23293525-23293645 1.0000 120 chr3R:13793457-13793577 1.0000 120 chr2L:15908620-15908740 1.0000 120 chr3R:30812608-30812728 1.0000 120 chr3L:22471716-22471836 1.0000 120 chr2R:10077911-10078031 1.0000 120 chr3R:26012913-26013033 1.0000 120 chr2L:7871952-7872072 1.0000 120 chr2L:14441047-14441167 1.0000 120 chrX:17696809-17696929 1.0000 120 chr3R:13713705-13713825 1.0000 120 chrX:21375770-21375890 1.0000 120 chr2L:10760707-10760827 1.0000 120 chr2R:8045110-8045230 1.0000 120 chr3L:3336793-3336913 1.0000 120 chr2L:11189245-11189365 1.0000 120 chrX:17737950-17738070 1.0000 120 chr3L:15592693-15592813 1.0000 120 chr3R:22121361-22121481 1.0000 120 chr3L:15691321-15691441 1.0000 120 chr2L:15254390-15254510 1.0000 120 chr2L:5238323-5238443 1.0000 120 chr2L:18305175-18305295 1.0000 120 chr3R:23300731-23300851 1.0000 120 chr3R:18393608-18393728 1.0000 120 chrX:16944115-16944235 1.0000 120 chr3L:4254389-4254509 1.0000 120 chr2L:17583109-17583229 1.0000 120 chrX:13274598-13274718 1.0000 120 chr2L:9595027-9595147 1.0000 120 chr3R:14470751-14470871 1.0000 120 chrX:7617057-7617177 1.0000 120 chr3R:5076301-5076421 1.0000 120 chr2L:10428630-10428750 1.0000 120 chr3R:26444279-26444399 1.0000 120 chr3R:26888457-26888577 1.0000 120 chr3L:7861176-7861296 1.0000 120 chrX:2396625-2396745 1.0000 120 chr3R:23345177-23345297 1.0000 120 chr3L:3855301-3855421 1.0000 120 chr3L:6157738-6157858 1.0000 120 chr3L:12644492-12644612 1.0000 120 chr2R:13923506-13923626 1.0000 120 chr3R:16771738-16771858 1.0000 120 chr3R:16837931-16838051 1.0000 120 chrX:10628969-10629089 1.0000 120 chr2R:13924379-13924499 1.0000 120 chr3R:18311393-18311513 1.0000 120 chr3L:8951154-8951274 1.0000 120 chrX:9899866-9899986 1.0000 120 chrX:12242508-12242628 1.0000 120 chrX:16854867-16854987 1.0000 120 chr3R:8960469-8960589 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_gem/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/gem.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.37 C 0.13 G 0.128 T 0.372 Background letter frequencies (from file dataset with add-one prior applied): A 0.37 C 0.13 G 0.128 T 0.372 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGSCGSCR MEME-1 width = 8 sites = 12 llr = 141 E-value = 1.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::::13 pos.-specific C a27a:57: probability G :83:8537 matrix T :1::2::: bits 3.0 * * 2.7 * * 2.4 * * 2.1 * **** Relative 1.8 ******* Entropy 1.5 ******** (16.9 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCCGCCG consensus G GGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:12436660-12436780 67 1.55e-07 TAGTGCAGCT CGCCGGCG GTTGAAACCG chr2R:12926539-12926659 62 1.55e-07 CGATCCGGAT CGCCGCCG AGTGTCTATA chr2R:14357269-14357389 101 3.07e-07 ATCGGTATTT CGGCGGCG CCACTTTCTT chrX:17737950-17738070 106 4.59e-07 TGTTCTTTTT CGCCGCGG TAGCTAT chr3R:16349277-16349397 71 6.16e-07 CGTGGCGCTG CCCCGCCG ATAAATGAGT chr2R:11628158-11628278 61 1.21e-06 TAACGAAAAC CGCCGCCA GGGGCGCTGC chr2R:21709658-21709778 1 1.96e-06 . CGGCGGCA CAGTGAACGC chr2L:1125553-1125673 72 4.79e-06 CGCCGTAGTG CCCCGGCA ATGGGTCTAT chr3L:3409701-3409821 104 6.10e-06 AAGAGGCAGG CGGCGGAG AAGAAGCCC chrX:7617057-7617177 71 7.88e-06 catttttTTG CTCCGCGG TCTTGCAGGT chr3R:20951049-20951169 9 8.76e-06 GTTTTACC CGGCTCGG AGATTTTAGG chr2L:7293579-7293699 106 1.01e-05 GCTTTTTATT CGCCTGCA TTGATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12436660-12436780 1.5e-07 66_[+1]_46 chr2R:12926539-12926659 1.5e-07 61_[+1]_51 chr2R:14357269-14357389 3.1e-07 100_[+1]_12 chrX:17737950-17738070 4.6e-07 105_[+1]_7 chr3R:16349277-16349397 6.2e-07 70_[+1]_42 chr2R:11628158-11628278 1.2e-06 60_[+1]_52 chr2R:21709658-21709778 2e-06 [+1]_112 chr2L:1125553-1125673 4.8e-06 71_[+1]_41 chr3L:3409701-3409821 6.1e-06 103_[+1]_9 chrX:7617057-7617177 7.9e-06 70_[+1]_42 chr3R:20951049-20951169 8.8e-06 8_[+1]_104 chr2L:7293579-7293699 1e-05 105_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGSCGSCR width=8 seqs=12 chr2L:12436660-12436780 ( 67) CGCCGGCG 1 chr2R:12926539-12926659 ( 62) CGCCGCCG 1 chr2R:14357269-14357389 ( 101) CGGCGGCG 1 chrX:17737950-17738070 ( 106) CGCCGCGG 1 chr3R:16349277-16349397 ( 71) CCCCGCCG 1 chr2R:11628158-11628278 ( 61) CGCCGCCA 1 chr2R:21709658-21709778 ( 1) CGGCGGCA 1 chr2L:1125553-1125673 ( 72) CCCCGGCA 1 chr3L:3409701-3409821 ( 104) CGGCGGAG 1 chrX:7617057-7617177 ( 71) CTCCGCGG 1 chr3R:20951049-20951169 ( 9) CGGCTCGG 1 chr2L:7293579-7293699 ( 106) CGCCTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 1.5e-004 -1023 295 -1023 -1023 -1023 36 255 -216 -1023 236 138 -1023 -1023 295 -1023 -1023 -1023 -1023 270 -116 -1023 195 196 -1023 -215 236 96 -1023 -15 -1023 238 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.750000 0.083333 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.500000 0.500000 0.000000 0.083333 0.666667 0.250000 0.000000 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGSCR MEME-1 regular expression -------------------------------------------------------------------------------- CG[CG]CG[CG][CG][GA] -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGWTCG MEME-2 width = 8 sites = 9 llr = 103 E-value = 7.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:3::: pos.-specific C 9a:1:1a2 probability G 1:99:1:8 matrix T ::::78:: bits 3.0 * * 2.7 * * 2.4 **** * 2.1 **** ** Relative 1.8 **** ** Entropy 1.5 **** ** (16.6 bits) 1.2 **** ** 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCGGTTCG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22539303-22539423 48 6.38e-07 GACAAGTAAA CCGGTTCG AGGCAGATGC chr2R:12926539-12926659 46 6.38e-07 CCCTGCCATT CCGGTTCG ATCCGGATCG chr3L:3336793-3336913 45 1.27e-06 CCACTGAGAA CCGGATCG GCTATTTTGA chr2L:21367415-21367535 76 1.27e-06 CTACTTGAAA CCGGATCG CGGTTTAATG chr2R:3942497-3942617 40 5.17e-06 CTAGAAATAA GCGGTTCG CAACCAGAAA chr2L:12436660-12436780 82 5.17e-06 GCGGTTGAAA CCGCTTCG AACTTGATTA chr2L:1125553-1125673 35 5.17e-06 ATACACACAA CCGGTGCC GGTTTGAACC chr3R:16349277-16349397 14 6.89e-06 CCAGTAAATT CCGGACCC CGATAGTATG chr2R:16009205-16009325 68 9.61e-06 GTCCGTTTTA CCAGTTCG AGATGATCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22539303-22539423 6.4e-07 47_[+2]_65 chr2R:12926539-12926659 6.4e-07 45_[+2]_67 chr3L:3336793-3336913 1.3e-06 44_[+2]_68 chr2L:21367415-21367535 1.3e-06 75_[+2]_37 chr2R:3942497-3942617 5.2e-06 39_[+2]_73 chr2L:12436660-12436780 5.2e-06 81_[+2]_31 chr2L:1125553-1125673 5.2e-06 34_[+2]_78 chr3R:16349277-16349397 6.9e-06 13_[+2]_99 chr2R:16009205-16009325 9.6e-06 67_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGWTCG width=8 seqs=9 chr2R:22539303-22539423 ( 48) CCGGTTCG 1 chr2R:12926539-12926659 ( 46) CCGGTTCG 1 chr3L:3336793-3336913 ( 45) CCGGATCG 1 chr2L:21367415-21367535 ( 76) CCGGATCG 1 chr2R:3942497-3942617 ( 40) GCGGTTCG 1 chr2L:12436660-12436780 ( 82) CCGCTTCG 1 chr2L:1125553-1125673 ( 35) CCGGTGCC 1 chr3R:16349277-16349397 ( 14) CCGGACCC 1 chr2R:16009205-16009325 ( 68) CCAGTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9173 E= 7.7e+000 -982 278 -21 -982 -982 295 -982 -982 -173 -982 279 -982 -982 -22 279 -982 -15 -982 -982 84 -982 -22 -21 106 -982 295 -982 -982 -982 78 260 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 7.7e+000 0.000000 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.111111 0.888889 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.111111 0.111111 0.777778 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGWTCG MEME-2 regular expression -------------------------------------------------------------------------------- CCGG[TA]TC[GC] -------------------------------------------------------------------------------- Time 13.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCGA MEME-3 width = 8 sites = 8 llr = 95 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::11:::8 pos.-specific C :a:9191: probability G 9:8:9193 matrix T 1:1::::: bits 3.0 * 2.7 * 2.4 ** *** 2.1 ** **** Relative 1.8 ** **** Entropy 1.5 ******* (17.2 bits) 1.2 ******* 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCGCGCGA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3336793-3336913 102 2.94e-07 GACAAGACGT GCGCGCGG ACTGAAAATT chr3R:16771738-16771858 33 5.09e-07 TAGTGGTGAA GCGCGGGA GAACTTTCAA chr2R:12926539-12926659 19 1.03e-06 GAACATCATT GCGCCCGA CGGACTGCAC chr2R:11628158-11628278 25 1.03e-06 AATTTTGAAG GCGCGCCA AGCGGAGTGA chr2L:18694859-18694979 34 2.44e-06 TCCATACTTT GCTCGCGA ATTATTACAT chr3R:5503987-5504107 61 2.44e-06 GGGGGCAAGA GCACGCGA ATAACCCCCT chr3L:3409701-3409821 80 4.35e-06 GGTCTAGAGA TCGCGCGA AGGGAGAAGA chr2L:8086820-8086940 79 4.35e-06 GAGCGGCAGT GCGAGCGG GACGGCAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3336793-3336913 2.9e-07 101_[+3]_11 chr3R:16771738-16771858 5.1e-07 32_[+3]_80 chr2R:12926539-12926659 1e-06 18_[+3]_94 chr2R:11628158-11628278 1e-06 24_[+3]_88 chr2L:18694859-18694979 2.4e-06 33_[+3]_79 chr3R:5503987-5504107 2.4e-06 60_[+3]_52 chr3L:3409701-3409821 4.4e-06 79_[+3]_33 chr2L:8086820-8086940 4.4e-06 78_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCGA width=8 seqs=8 chr3L:3336793-3336913 ( 102) GCGCGCGG 1 chr3R:16771738-16771858 ( 33) GCGCGGGA 1 chr2R:12926539-12926659 ( 19) GCGCCCGA 1 chr2R:11628158-11628278 ( 25) GCGCGCCA 1 chr2L:18694859-18694979 ( 34) GCTCGCGA 1 chr3R:5503987-5504107 ( 61) GCACGCGA 1 chr3L:3409701-3409821 ( 80) TCGCGCGA 1 chr2L:8086820-8086940 ( 79) GCGAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 2.3e+000 -965 -965 277 -157 -965 295 -965 -965 -156 -965 254 -157 -156 275 -965 -965 -965 -5 277 -965 -965 275 -4 -965 -965 -5 277 -965 102 -965 96 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+000 0.000000 0.000000 0.875000 0.125000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.750000 0.125000 0.125000 0.875000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.125000 0.875000 0.000000 0.750000 0.000000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGA MEME-3 regular expression -------------------------------------------------------------------------------- GCGCGCG[AG] -------------------------------------------------------------------------------- Time 20.08 secs. ******************************************************************************** ******************************************************************************** MOTIF SDTTTGSC MEME-4 width = 8 sites = 20 llr = 192 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C 4:1:1:4a probability G 651:3a6: matrix T :39a7::: bits 3.0 * * 2.7 * * 2.4 * * 2.1 * *** Relative 1.8 * *** Entropy 1.5 * * *** (13.8 bits) 1.2 * * *** 0.9 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGTTTGGC consensus CA G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10449112-10449232 62 2.41e-06 ACAGTCGTTA GGTTTGGC TACTCTTTTA chr3R:7591329-7591449 68 7.32e-06 CAACTTGCTA CGTTTGGC TTGTTGTTTC chr2R:18531153-18531273 79 7.32e-06 GGATTCAAGC GGTTTGCC AATATGCCCA chr2L:12436660-12436780 105 7.32e-06 GATTACATGG CGTTTGGC TGTGCGGC chr3R:11617516-11617636 96 7.96e-06 TCGTTTTAGC CGTTGGCC AGCTTTTGTT chrX:12937957-12938077 113 9.81e-06 GAAAGAGTTT CGTTTGCC chr3L:10428238-10428358 90 9.81e-06 AGTTTAATTT CGTTTGCC TTTTTTTTAT chr2R:12020601-12020721 96 1.04e-05 TTGATTGAAA GGTTCGGC TCTTAATCAT chr3R:21420055-21420175 7 1.40e-05 CTATAT GATTGGGC TCCTTCCAAA chr3R:8960469-8960589 112 2.49e-05 TAATTGTTTT GATTTGGC T chr3L:9042786-9042906 34 2.49e-05 CTTAGAATAT GGCTGGGC ATCATAGAAA chr3L:16840634-16840754 14 2.49e-05 GATTTTCAAA GTTTTGGC TTCAAGAATT chrX:3740423-3740543 82 2.49e-05 AATAAAACTT GGGTGGGC GCTAAAGAGA chr2L:12024329-12024449 91 2.49e-05 TTTGGAGCCA GTTTTGGC TAGATTCTAG chr3L:3080430-3080550 55 2.49e-05 CAAAATACTA GTTTTGGC GATTGCACCG chr3R:5503987-5504107 110 3.47e-05 TATCTGGTTT GATTGGCC GGC chr3R:14470751-14470871 6 5.67e-05 TTTGA GATTTGCC GATATACAGA chr3L:3983530-3983650 77 5.67e-05 ATGTTTTATT CTTTTGGC CGCTATTACC chr2L:1125553-1125673 7 7.47e-05 ACGGAA CATTTGCC CAGTGTAAAC chr2R:22537531-22537651 49 7.47e-05 TTGCTTTCGG CTTTTGCC GTAAAAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10449112-10449232 2.4e-06 61_[+4]_51 chr3R:7591329-7591449 7.3e-06 67_[+4]_45 chr2R:18531153-18531273 7.3e-06 78_[+4]_34 chr2L:12436660-12436780 7.3e-06 104_[+4]_8 chr3R:11617516-11617636 8e-06 95_[+4]_17 chrX:12937957-12938077 9.8e-06 112_[+4] chr3L:10428238-10428358 9.8e-06 89_[+4]_23 chr2R:12020601-12020721 1e-05 95_[+4]_17 chr3R:21420055-21420175 1.4e-05 6_[+4]_106 chr3R:8960469-8960589 2.5e-05 111_[+4]_1 chr3L:9042786-9042906 2.5e-05 33_[+4]_79 chr3L:16840634-16840754 2.5e-05 13_[+4]_99 chrX:3740423-3740543 2.5e-05 81_[+4]_31 chr2L:12024329-12024449 2.5e-05 90_[+4]_22 chr3L:3080430-3080550 2.5e-05 54_[+4]_58 chr3R:5503987-5504107 3.5e-05 109_[+4]_3 chr3R:14470751-14470871 5.7e-05 5_[+4]_107 chr3L:3983530-3983650 5.7e-05 76_[+4]_36 chr2L:1125553-1125673 7.5e-05 6_[+4]_106 chr2R:22537531-22537651 7.5e-05 48_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SDTTTGSC width=8 seqs=20 chr3R:10449112-10449232 ( 62) GGTTTGGC 1 chr3R:7591329-7591449 ( 68) CGTTTGGC 1 chr2R:18531153-18531273 ( 79) GGTTTGCC 1 chr2L:12436660-12436780 ( 105) CGTTTGGC 1 chr3R:11617516-11617636 ( 96) CGTTGGCC 1 chrX:12937957-12938077 ( 113) CGTTTGCC 1 chr3L:10428238-10428358 ( 90) CGTTTGCC 1 chr2R:12020601-12020721 ( 96) GGTTCGGC 1 chr3R:21420055-21420175 ( 7) GATTGGGC 1 chr3R:8960469-8960589 ( 112) GATTTGGC 1 chr3L:9042786-9042906 ( 34) GGCTGGGC 1 chr3L:16840634-16840754 ( 14) GTTTTGGC 1 chrX:3740423-3740543 ( 82) GGGTGGGC 1 chr2L:12024329-12024449 ( 91) GTTTTGGC 1 chr3L:3080430-3080550 ( 55) GTTTTGGC 1 chr3R:5503987-5504107 ( 110) GATTGGCC 1 chr3R:14470751-14470871 ( 6) GATTTGCC 1 chr3L:3983530-3983650 ( 77) CTTTTGGC 1 chr2L:1125553-1125673 ( 7) CATTTGCC 1 chr2R:22537531-22537651 ( 49) CTTTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 2.4e+002 -1097 163 222 -1097 -56 -1097 196 -57 -1097 -137 -136 127 -1097 -1097 -1097 143 -1097 -137 96 91 -1097 -1097 296 -1097 -1097 163 222 -1097 -1097 295 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.4e+002 0.000000 0.400000 0.600000 0.000000 0.250000 0.000000 0.500000 0.250000 0.000000 0.050000 0.050000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050000 0.250000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDTTTGSC MEME-4 regular expression -------------------------------------------------------------------------------- [GC][GAT]TT[TG]G[GC]C -------------------------------------------------------------------------------- Time 26.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGMTGS MEME-5 width = 8 sites = 8 llr = 91 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5:41:: pos.-specific C :a1:6::4 probability G a::a::a6 matrix T ::4::9:: bits 3.0 ** * * 2.7 ** * * 2.4 ** * * 2.1 ** * ** Relative 1.8 ** * ** Entropy 1.5 ** ** ** (16.4 bits) 1.2 ** ** ** 0.9 ** ***** 0.6 ** ***** 0.3 ******** 0.0 -------- Multilevel GCAGCTGG consensus T A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7241744-7241864 113 1.25e-06 CAAATTTCTT GCTGCTGG chr2R:18531153-18531273 30 1.25e-06 CAAATAATTA GCTGCTGG TGTCAACAGC chr3L:5926059-5926179 14 2.11e-06 TCTTTTAGGT GCAGCTGC ATATTCAAAT chr2R:11628158-11628278 74 2.74e-06 CGCCAGGGGC GCTGCTGC ACACAAAATA chr2R:16009205-16009325 89 4.74e-06 TGATCGGGGG GCAGATGG ACAAACCAGT chr2L:8101085-8101205 10 7.78e-06 ATAGCCTTC GCAGCAGG TACATATACA chr3R:20951049-20951169 51 7.78e-06 TTAACAGATT GCCGATGG CAGTAAAAGC chr2R:22539303-22539423 58 9.58e-06 CCGGTTCGAG GCAGATGC CTTAAGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7241744-7241864 1.3e-06 112_[+5] chr2R:18531153-18531273 1.3e-06 29_[+5]_83 chr3L:5926059-5926179 2.1e-06 13_[+5]_99 chr2R:11628158-11628278 2.7e-06 73_[+5]_39 chr2R:16009205-16009325 4.7e-06 88_[+5]_24 chr2L:8101085-8101205 7.8e-06 9_[+5]_103 chr3R:20951049-20951169 7.8e-06 50_[+5]_62 chr2R:22539303-22539423 9.6e-06 57_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGMTGS width=8 seqs=8 chr2R:7241744-7241864 ( 113) GCTGCTGG 1 chr2R:18531153-18531273 ( 30) GCTGCTGG 1 chr3L:5926059-5926179 ( 14) GCAGCTGC 1 chr2R:11628158-11628278 ( 74) GCTGCTGC 1 chr2R:16009205-16009325 ( 89) GCAGATGG 1 chr2L:8101085-8101205 ( 10) GCAGCAGG 1 chr3R:20951049-20951169 ( 51) GCCGATGG 1 chr2R:22539303-22539423 ( 58) GCAGATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.7e+003 -965 -965 296 -965 -965 295 -965 -965 43 -5 -965 1 -965 -965 296 -965 2 227 -965 -965 -156 -965 -965 123 -965 -965 296 -965 -965 153 228 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.125000 0.000000 0.375000 0.000000 0.000000 1.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGMTGS MEME-5 regular expression -------------------------------------------------------------------------------- GC[AT]G[CA]TG[GC] -------------------------------------------------------------------------------- Time 32.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21367415-21367535 2.15e-04 75_[+2(1.27e-06)]_24_[+2(8.70e-05)]_\ 5 chr3L:3080430-3080550 3.73e-03 54_[+4(2.49e-05)]_58 chr2R:22537531-22537651 4.70e-04 48_[+4(7.47e-05)]_7_[+2(7.85e-05)]_\ 49 chr2R:16009205-16009325 9.49e-07 67_[+2(9.61e-06)]_13_[+5(4.74e-06)]_\ 24 chr2L:1125553-1125673 1.93e-07 6_[+4(7.47e-05)]_20_[+2(5.17e-06)]_\ 29_[+1(4.79e-06)]_24_[+1(8.96e-05)]_9 chr3L:18817746-18817866 2.12e-04 19_[+1(4.63e-05)]_93 chrX:16907155-16907275 2.20e-03 120 chr2R:11628158-11628278 1.47e-09 24_[+3(1.03e-06)]_28_[+1(1.21e-06)]_\ 5_[+5(2.74e-06)]_39 chr2L:8086820-8086940 4.61e-06 65_[+2(2.09e-05)]_5_[+3(4.35e-06)]_\ 34 chr3L:3409701-3409821 5.37e-07 19_[+1(6.41e-05)]_1_[+5(7.67e-05)]_\ 43_[+3(4.35e-06)]_16_[+1(6.10e-06)]_9 chr2R:12926539-12926659 4.04e-11 18_[+3(1.03e-06)]_19_[+2(6.38e-07)]_\ 8_[+1(1.55e-07)]_51 chr2L:12436660-12436780 7.14e-12 66_[+1(1.55e-07)]_7_[+2(5.17e-06)]_\ 15_[+4(7.32e-06)]_8 chr2L:12024329-12024449 2.21e-03 90_[+4(2.49e-05)]_22 chr2R:18531153-18531273 5.99e-08 29_[+5(1.25e-06)]_41_[+4(7.32e-06)]_\ 34 chr3L:110093-110213 3.05e-01 120 chr2L:6595171-6595291 9.22e-01 120 chr3L:7592276-7592396 6.47e-01 120 chr3R:15366986-15367106 1.00e+00 120 chrX:3109025-3109145 2.06e-01 120 chr2R:22539303-22539423 4.53e-07 47_[+2(6.38e-07)]_2_[+5(9.58e-06)]_\ 55 chr3R:20951049-20951169 6.13e-07 8_[+1(8.76e-06)]_34_[+5(7.78e-06)]_\ 62 chr3L:7861922-7862042 9.93e-01 120 chr2R:16847073-16847193 1.83e-01 120 chrX:7095020-7095140 8.69e-01 120 chr3R:16349277-16349397 3.72e-07 13_[+2(6.89e-06)]_49_[+1(6.16e-07)]_\ 42 chr2R:3942497-3942617 4.05e-03 39_[+2(5.17e-06)]_73 chrX:9350424-9350544 6.18e-01 120 chr2R:13996705-13996825 6.96e-01 120 chr2L:2374078-2374198 9.64e-01 120 chr3L:3786930-3787050 6.31e-01 120 chr3L:18227469-18227589 9.92e-01 120 chr2L:16255296-16255416 2.04e-02 54_[+5(5.70e-05)]_58 chr3L:19073987-19074107 7.29e-01 120 chr2R:5128323-5128443 2.20e-01 120 chrX:13109845-13109965 7.06e-01 120 chr2L:7150901-7151021 9.73e-01 120 chr3L:18402695-18402815 8.71e-01 120 chr3L:14961152-14961272 1.00e+00 120 chr3L:19338404-19338524 9.36e-01 120 chr3L:2651925-2652045 7.00e-01 120 chr3R:11663622-11663742 1.50e-01 120 chrX:8445011-8445131 9.98e-01 120 chr3L:18996845-18996965 2.35e-02 120 chr3L:11467131-11467251 7.64e-01 120 chr3R:5503987-5504107 9.16e-05 60_[+3(2.44e-06)]_41_[+4(3.47e-05)]_\ 3 chr2R:5496113-5496233 9.99e-01 120 chr2L:18694859-18694979 4.55e-03 33_[+3(2.44e-06)]_79 chr2R:16581770-16581890 1.12e-01 120 chrX:14840637-14840757 9.85e-01 120 chr3L:17532330-17532450 9.07e-01 120 chr2L:1218168-1218288 1.24e-02 60_[+2(8.70e-05)]_52 chr2R:16846012-16846132 9.64e-01 120 chr3L:16045455-16045575 3.61e-01 120 chr3L:19088009-19088129 9.99e-01 120 chr3R:13446641-13446761 9.62e-01 120 chrX:3740423-3740543 4.46e-02 81_[+4(2.49e-05)]_31 chr2R:13474989-13475109 9.42e-01 120 chr2R:5122256-5122376 1.00e-01 120 chr2L:7492051-7492171 3.90e-02 120 chr2R:6219982-6220102 7.09e-01 120 chr3R:9783355-9783475 5.81e-02 120 chr3R:16510312-16510432 9.90e-01 120 chr2L:14252572-14252692 9.80e-01 120 chr3L:18297494-18297614 6.22e-01 120 chr3L:10893499-10893619 8.77e-01 120 chr2R:25257012-25257132 1.00e+00 120 chr2R:12020601-12020721 1.37e-02 95_[+4(1.04e-05)]_17 chrX:3455539-3455659 9.92e-01 120 chr3L:3544401-3544521 9.42e-01 120 chr3L:18290488-18290608 8.11e-01 120 chr3L:18102181-18102301 9.29e-01 120 chr3R:9344925-9345045 9.79e-01 120 chr3R:7591329-7591449 4.88e-02 67_[+4(7.32e-06)]_45 chr2R:8734626-8734746 3.81e-02 120 chr3R:25184154-25184274 7.49e-01 120 chr2L:20808307-20808427 9.39e-01 120 chr3L:10767301-10767421 6.64e-01 120 chr3L:16840634-16840754 8.19e-02 13_[+4(2.49e-05)]_99 chr3L:4603597-4603717 8.08e-01 120 chr2L:8101085-8101205 3.67e-04 9_[+5(7.78e-06)]_103 chr2L:16869142-16869262 1.00e+00 120 chr2R:22677958-22678078 4.85e-01 120 chr2R:8759565-8759685 4.48e-02 60_[+1(6.04e-05)]_52 chr3R:21612962-21613082 1.72e-01 120 chr2R:24139208-24139328 5.30e-04 81_[+1(1.78e-05)]_31 chr3R:6414894-6415014 7.92e-01 120 chr3L:21047109-21047229 2.69e-01 120 chr2L:11341094-11341214 9.98e-01 120 chr3L:16054275-16054395 7.54e-01 120 chr2R:11602027-11602147 1.78e-01 120 chr3L:10428238-10428358 6.81e-02 89_[+4(9.81e-06)]_23 chr3L:9695746-9695866 2.25e-01 120 chr3R:29004998-29005118 4.64e-01 120 chr3R:12562176-12562296 9.39e-01 120 chr2R:7241744-7241864 3.34e-04 112_[+5(1.25e-06)] chr2L:8080794-8080914 5.95e-01 120 chrX:3019755-3019875 5.63e-01 120 chr3R:16801189-16801309 2.90e-02 120 chr3R:25445629-25445749 9.95e-01 120 chr3L:10697183-10697303 1.00e+00 120 chr3R:21276324-21276444 5.75e-03 120 chrX:12937957-12938077 2.22e-02 112_[+4(9.81e-06)] chr3R:13907825-13907945 2.22e-01 120 chr2R:14161290-14161410 9.43e-01 120 chr2L:18484825-18484945 5.71e-01 120 chr2L:10543546-10543666 9.90e-01 120 chr3R:18438907-18439027 5.39e-01 120 chr2R:19860387-19860507 3.28e-01 120 chr2L:14024847-14024967 7.82e-01 120 chr3R:13799723-13799843 8.10e-01 120 chr2R:15155053-15155173 5.67e-01 120 chr3L:10951211-10951331 3.69e-01 120 chr3L:18349413-18349533 5.97e-02 120 chr3L:13356167-13356287 2.20e-01 120 chr3R:10449112-10449232 6.07e-03 61_[+4(2.41e-06)]_51 chr2L:1428464-1428584 8.57e-01 120 chr2L:2905164-2905284 9.67e-01 120 chr2R:21364794-21364914 9.05e-01 120 chr3R:28904307-28904427 8.19e-01 120 chr2L:13876789-13876909 9.36e-01 120 chr2L:3587438-3587558 2.22e-01 120 chr2L:7293579-7293699 1.73e-02 105_[+1(1.01e-05)]_7 chr3L:11291602-11291722 6.05e-01 120 chr3R:8867857-8867977 9.98e-01 120 chrX:17782169-17782289 2.51e-01 120 chr3L:6817105-6817225 9.56e-01 120 chr2R:12727685-12727805 3.48e-01 120 chrX:14679303-14679423 9.98e-01 120 chr2L:3851450-3851570 9.99e-01 120 chr2R:20257437-20257557 9.98e-01 120 chr3R:23969557-23969677 8.70e-01 120 chr2R:14971163-14971283 3.39e-02 59_[+2(5.47e-05)]_53 chr3R:14095552-14095672 8.48e-01 120 chr2R:14305244-14305364 2.01e-01 120 chr3R:26117779-26117899 4.77e-01 120 chr3L:5926059-5926179 3.54e-03 13_[+5(2.11e-06)]_99 chr3L:10428876-10428996 4.25e-01 120 chr3R:8955013-8955133 8.55e-01 120 chr3R:26014371-26014491 5.73e-01 120 chr2L:14245606-14245726 1.28e-01 120 chr3R:31704670-31704790 1.31e-01 120 chrX:12225413-12225533 5.16e-01 120 chr3L:6885759-6885879 9.62e-01 120 chr3L:3873176-3873296 7.49e-01 120 chr3L:9042786-9042906 3.95e-03 33_[+4(2.49e-05)]_79 chr3L:19216538-19216658 9.95e-01 120 chr3L:14363207-14363327 1.46e-01 120 chr3L:3437266-3437386 9.99e-01 120 chrX:14634846-14634966 9.23e-01 120 chr2L:11331804-11331924 7.28e-01 120 chr2R:14803412-14803532 4.76e-01 120 chr3R:12406346-12406466 3.81e-01 120 chrX:19348935-19349055 5.46e-01 120 chr3R:8469819-8469939 1.65e-01 120 chrX:14743883-14744003 9.97e-01 120 chrX:16580100-16580220 8.88e-03 33_[+1(7.45e-05)]_79 chr2L:9564670-9564790 9.83e-01 120 chr3R:15652735-15652855 7.61e-01 120 chr2L:17588773-17588893 9.97e-01 120 chr3L:19899031-19899151 9.39e-01 120 chr3R:23921818-23921938 3.27e-01 120 chrX:10573648-10573768 9.24e-01 120 chr3R:10641409-10641529 8.70e-01 120 chr3R:21420055-21420175 3.41e-03 6_[+4(1.40e-05)]_106 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