******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fu2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:6811321-6811441 1.0000 120 chrX:9156375-9156495 1.0000 120 chr2L:22982255-22982375 1.0000 120 chrX:11391687-11391807 1.0000 120 chr2L:20647653-20647773 1.0000 120 chr2L:2735120-2735240 1.0000 120 chr2L:20079076-20079196 1.0000 120 chr2R:20529491-20529611 1.0000 120 chr2R:11044602-11044722 1.0000 120 chr2L:21102641-21102761 1.0000 120 chr3L:2632533-2632653 1.0000 120 chr2L:3058880-3059000 1.0000 120 chr2L:12096464-12096584 1.0000 120 chrX:17578285-17578405 1.0000 120 chr2L:8087362-8087482 1.0000 120 chr3R:20311110-20311230 1.0000 120 chrX:3538908-3539028 1.0000 120 chr2L:18441378-18441498 1.0000 120 chr3R:31220886-31221006 1.0000 120 chr2R:16856176-16856296 1.0000 120 chrX:13817559-13817679 1.0000 120 chr3L:17847020-17847140 1.0000 120 chrX:23010786-23010906 1.0000 120 chr3R:26556025-26556145 1.0000 120 chr3R:18226787-18226907 1.0000 120 chr2R:1264729-1264849 1.0000 120 chr2R:10122569-10122689 1.0000 120 chr2L:6479742-6479862 1.0000 120 chrX:13253242-13253362 1.0000 120 chr2L:1987805-1987925 1.0000 120 chrX:12611724-12611844 1.0000 120 chr3L:16149958-16150078 1.0000 120 chr3R:12422710-12422830 1.0000 120 chr3R:26056537-26056657 1.0000 120 chrX:3950226-3950346 1.0000 120 chr2R:18172409-18172529 1.0000 120 chrX:20433582-20433702 1.0000 120 chr3L:2782125-2782245 1.0000 120 chr2L:13784014-13784134 1.0000 120 chr2L:16727547-16727667 1.0000 120 chrX:3714087-3714207 1.0000 120 chr3R:8009260-8009380 1.0000 120 chr3L:3544264-3544384 1.0000 120 chr2L:16817754-16817874 1.0000 120 chr2R:19971535-19971655 1.0000 120 chr3R:21118931-21119051 1.0000 120 chr2L:13784231-13784351 1.0000 120 chr2L:1129643-1129763 1.0000 120 chr3R:11460922-11461042 1.0000 120 chrX:948261-948381 1.0000 120 chr2L:5209893-5210013 1.0000 120 chr2R:23997273-23997393 1.0000 120 chr2R:11662219-11662339 1.0000 120 chr3L:1609708-1609828 1.0000 120 chr3L:10866767-10866887 1.0000 120 chr3L:12526432-12526552 1.0000 120 chr4:670979-671099 1.0000 120 chr2L:6919970-6920090 1.0000 120 chr3R:28600541-28600661 1.0000 120 chr3L:16714290-16714410 1.0000 120 chr3L:3770994-3771114 1.0000 120 chr3R:18914726-18914846 1.0000 120 chr2R:5663798-5663918 1.0000 120 chr3R:15963942-15964062 1.0000 120 chrX:16781255-16781375 1.0000 120 chr3L:166630-166750 1.0000 120 chr2R:23062546-23062666 1.0000 120 chr2R:21470658-21470778 1.0000 120 chr2L:8198919-8199039 1.0000 120 chrX:13088240-13088360 1.0000 120 chr4:179435-179555 1.0000 120 chrX:20434584-20434704 1.0000 120 chr2R:17420051-17420171 1.0000 120 chr2L:22168539-22168659 1.0000 120 chr3L:22277369-22277489 1.0000 120 chr2L:5325074-5325194 1.0000 120 chr3R:14356774-14356894 1.0000 120 chr2R:22373568-22373688 1.0000 120 chrX:8491919-8492039 1.0000 120 chr3L:3970518-3970638 1.0000 120 chr3L:1151790-1151910 1.0000 120 chr3L:5182433-5182553 1.0000 120 chr3R:13383024-13383144 1.0000 120 chr2R:13586452-13586572 1.0000 120 chr3R:31805368-31805488 1.0000 120 chr2R:20270953-20271073 1.0000 120 chr3R:29806806-29806926 1.0000 120 chr2R:25183153-25183273 1.0000 120 chr2L:8437307-8437427 1.0000 120 chr3R:15139559-15139679 1.0000 120 chr3L:8411631-8411751 1.0000 120 chr2R:17161036-17161156 1.0000 120 chr3R:5065153-5065273 1.0000 120 chr3L:4193884-4194004 1.0000 120 chrX:2720287-2720407 1.0000 120 chr3L:3078580-3078700 1.0000 120 chr3R:8356900-8357020 1.0000 120 chr3R:8784936-8785056 1.0000 120 chr3L:4413162-4413282 1.0000 120 chr3R:23228792-23228912 1.0000 120 chrX:8112865-8112985 1.0000 120 chr3R:27557049-27557169 1.0000 120 chrX:18405122-18405242 1.0000 120 chr2R:14604260-14604380 1.0000 120 chr3R:19094847-19094967 1.0000 120 chr2R:16202853-16202973 1.0000 120 chrX:1240048-1240168 1.0000 120 chr2L:544458-544578 1.0000 120 chr2R:15532180-15532300 1.0000 120 chr3L:17009781-17009901 1.0000 120 chr2L:7027048-7027168 1.0000 120 chr3L:3225369-3225489 1.0000 120 chr2L:10437471-10437591 1.0000 120 chr2L:22130009-22130129 1.0000 120 chr2L:1177612-1177732 1.0000 120 chr3L:16147912-16148032 1.0000 120 chr2R:23818403-23818523 1.0000 120 chr3L:15563550-15563670 1.0000 120 chrX:18366654-18366774 1.0000 120 chr3R:10024188-10024308 1.0000 120 chr2R:10066605-10066725 1.0000 120 chr3L:21321906-21322026 1.0000 120 chr3L:8720144-8720264 1.0000 120 chr2R:24669221-24669341 1.0000 120 chr2R:14247552-14247672 1.0000 120 chr4:1030940-1031060 1.0000 120 chrX:19348975-19349095 1.0000 120 chrX:2073458-2073578 1.0000 120 chr3L:9838628-9838748 1.0000 120 chrX:1380480-1380600 1.0000 120 chr3L:3450505-3450625 1.0000 120 chr3L:14776110-14776230 1.0000 120 chr2R:15542587-15542707 1.0000 120 chrX:3399413-3399533 1.0000 120 chr2L:1837843-1837963 1.0000 120 chrX:18494273-18494393 1.0000 120 chr3R:23358979-23359099 1.0000 120 chr3L:20518244-20518364 1.0000 120 chr2R:23202146-23202266 1.0000 120 chr2R:23668841-23668961 1.0000 120 chr2R:7987826-7987946 1.0000 120 chr2R:10806712-10806832 1.0000 120 chr3R:8564035-8564155 1.0000 120 chr3L:17616978-17617098 1.0000 120 chr2L:14359125-14359245 1.0000 120 chrX:14169213-14169333 1.0000 120 chr3R:10331224-10331344 1.0000 120 chr2R:17536396-17536516 1.0000 120 chr3R:32051795-32051915 1.0000 120 chr2R:12274331-12274451 1.0000 120 chrX:3862423-3862543 1.0000 120 chr3L:199254-199374 1.0000 120 chr3L:3814573-3814693 1.0000 120 chr3L:15234625-15234745 1.0000 120 chr2L:9917924-9918044 1.0000 120 chr3R:18215451-18215571 1.0000 120 chr3L:16582900-16583020 1.0000 120 chr3L:13929290-13929410 1.0000 120 chr3L:13964694-13964814 1.0000 120 chrX:19146446-19146566 1.0000 120 chr3L:1947631-1947751 1.0000 120 chrX:5671762-5671882 1.0000 120 chr3R:6008403-6008523 1.0000 120 chr2R:22641251-22641371 1.0000 120 chr2R:5122237-5122357 1.0000 120 chr2L:20715128-20715248 1.0000 120 chrX:18783651-18783771 1.0000 120 chr3R:22025448-22025568 1.0000 120 chrX:11715454-11715574 1.0000 120 chr2R:18660605-18660725 1.0000 120 chr3R:20574845-20574965 1.0000 120 chr3R:28599591-28599711 1.0000 120 chrX:2591728-2591848 1.0000 120 chr3R:10139844-10139964 1.0000 120 chr2L:1158190-1158310 1.0000 120 chr3R:15472878-15472998 1.0000 120 chrX:19268736-19268856 1.0000 120 chr3R:16704370-16704490 1.0000 120 chrX:8437062-8437182 1.0000 120 chr3R:11244179-11244299 1.0000 120 chr3L:16544374-16544494 1.0000 120 chr2R:12200651-12200771 1.0000 120 chr3R:16355521-16355641 1.0000 120 chr3L:9456062-9456182 1.0000 120 chr4:1051421-1051541 1.0000 120 chr2R:8650578-8650698 1.0000 120 chr2L:2214098-2214218 1.0000 120 chrX:11137689-11137809 1.0000 120 chr3L:11429796-11429916 1.0000 120 chr3L:8110312-8110432 1.0000 120 chr2L:3373424-3373544 1.0000 120 chr2R:8947267-8947387 1.0000 120 chr2R:12772835-12772955 1.0000 120 chr2L:7601999-7602119 1.0000 120 chr3L:21821905-21822025 1.0000 120 chr3R:12997769-12997889 1.0000 120 chr2L:15629945-15630065 1.0000 120 chr2R:17062614-17062734 1.0000 120 chrX:5665925-5666045 1.0000 120 chrX:10600680-10600800 1.0000 120 chrX:7901782-7901902 1.0000 120 chr3L:7861166-7861286 1.0000 120 chr2R:19292138-19292258 1.0000 120 chr3R:21161847-21161967 1.0000 120 chr3L:17042647-17042767 1.0000 120 chrX:3968855-3968975 1.0000 120 chr3L:22065803-22065923 1.0000 120 chr2R:13008326-13008446 1.0000 120 chr2R:6636525-6636645 1.0000 120 chr2R:21295593-21295713 1.0000 120 chrX:1477042-1477162 1.0000 120 chr3R:23679964-23680084 1.0000 120 chr3L:12803825-12803945 1.0000 120 chr3R:22487176-22487296 1.0000 120 chr3R:22628061-22628181 1.0000 120 chr3L:10691172-10691292 1.0000 120 chr2R:22886487-22886607 1.0000 120 chr4:867072-867192 1.0000 120 chrX:16834306-16834426 1.0000 120 chr2R:14411696-14411816 1.0000 120 chr2L:14024802-14024922 1.0000 120 chr2L:20881502-20881622 1.0000 120 chr2R:8928079-8928199 1.0000 120 chr3L:9899148-9899268 1.0000 120 chr3R:23176859-23176979 1.0000 120 chr2L:3882344-3882464 1.0000 120 chrX:12462901-12463021 1.0000 120 chr2R:20906647-20906767 1.0000 120 chrX:4262745-4262865 1.0000 120 chrX:10184781-10184901 1.0000 120 chr3R:30280437-30280557 1.0000 120 chr2R:19128033-19128153 1.0000 120 chr2R:11204394-11204514 1.0000 120 chrX:5420826-5420946 1.0000 120 chr3L:4186775-4186895 1.0000 120 chrX:15739023-15739143 1.0000 120 chrX:16102500-16102620 1.0000 120 chr3R:25027706-25027826 1.0000 120 chr3R:5861590-5861710 1.0000 120 chr2R:20832433-20832553 1.0000 120 chr2L:3803900-3804020 1.0000 120 chrX:1858946-1859066 1.0000 120 chr3R:23028655-23028775 1.0000 120 chr3L:13486729-13486849 1.0000 120 chr3L:3197597-3197717 1.0000 120 chr2L:20918886-20919006 1.0000 120 chr2R:24265251-24265371 1.0000 120 chr3R:21613137-21613257 1.0000 120 chr3R:19165001-19165121 1.0000 120 chr2L:18859308-18859428 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fu2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fu2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.295 C 0.203 G 0.2 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.295 C 0.203 G 0.2 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CARCMCTG MEME-1 width = 8 sites = 24 llr = 236 E-value = 4.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a5:6::: pos.-specific C a::a4a:: probability G ::4::::a matrix T ::1:::a: bits 2.3 * * * * 2.1 * * * * 1.9 ** * * * 1.6 ** * *** Relative 1.4 ** * *** Entropy 1.2 ** * *** (14.2 bits) 0.9 ** * *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24265251-24265371 93 8.79e-06 CGCTGTTTTA CAGCACTG TTTTTAACAG chr2R:23818403-23818523 66 8.79e-06 AGCCGACTTG CAGCACTG GCCTTTGGAA chr2L:7027048-7027168 112 8.79e-06 CTGGCCCAAC CAGCACTG C chr2R:8928079-8928199 108 1.48e-05 ATTTTTACAT CAGCCCTG CCAGG chr2R:6636525-6636645 2 1.48e-05 A CAGCCCTG CTCGTGAATG chrX:7901782-7901902 54 1.48e-05 ATCGAAAAGC CAGCCCTG CGACGTTGCC chr3L:16582900-16583020 50 1.48e-05 ATAATATTCC CAGCCCTG TGGTAACTTG chr3R:12422710-12422830 66 1.48e-05 TTGCAGCACG CAGCCCTG GCTTCAAGGG chr3L:17847020-17847140 59 1.48e-05 TGCACATCGC CAGCCCTG CGACCGCTCC chr3L:9899148-9899268 77 2.78e-05 ATCTATTGGC CAACACTG GCAACCCAAG chrX:3968855-3968975 30 2.78e-05 CCAAAATACC CAACACTG GTTAACTGCT chr2R:19292138-19292258 47 2.78e-05 CGGCGCTTCA CAACACTG AAACACCACT chr2L:3373424-3373544 75 2.78e-05 GTGTGCTATT CAACACTG ACTGGCCAAA chr3R:22025448-22025568 78 2.78e-05 ACGCGCTTTT CAACACTG CCAGACATTA chrX:1380480-1380600 18 2.78e-05 CAGCGCTGCA CAACACTG CCACTGGCTC chr3L:4193884-4194004 45 2.78e-05 GCGCATTTTA CAACACTG CCAAACAATG chr2L:8437307-8437427 89 2.78e-05 TGGCCTTGTC CAACACTG TTCAGCCAGC chr2L:22168539-22168659 79 2.78e-05 TCGCGCTTTT CAACACTG CATCACGCGA chr2R:17420051-17420171 99 2.78e-05 CAGCGCTTCG CAACACTG TCGCCGCCCC chr3L:8110312-8110432 68 3.67e-05 CAGAGCTCGG CAACCCTG CAGCCGTGCG chr3L:9456062-9456182 21 3.67e-05 CGCCACAATG CAACCCTG CGCGCGCTTT chr3R:26056537-26056657 47 5.00e-05 TGACGTTTTT CATCACTG TTTCATTTGT chr3R:22487176-22487296 22 5.92e-05 AGCTTCATGA CATCCCTG TTGAGTTGAA chr2R:21295593-21295713 80 6.51e-05 GGCCCGGTGG CAGCGCTG AAATAACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24265251-24265371 8.8e-06 92_[+1]_20 chr2R:23818403-23818523 8.8e-06 65_[+1]_47 chr2L:7027048-7027168 8.8e-06 111_[+1]_1 chr2R:8928079-8928199 1.5e-05 107_[+1]_5 chr2R:6636525-6636645 1.5e-05 1_[+1]_111 chrX:7901782-7901902 1.5e-05 53_[+1]_59 chr3L:16582900-16583020 1.5e-05 49_[+1]_63 chr3R:12422710-12422830 1.5e-05 65_[+1]_47 chr3L:17847020-17847140 1.5e-05 58_[+1]_54 chr3L:9899148-9899268 2.8e-05 76_[+1]_36 chrX:3968855-3968975 2.8e-05 29_[+1]_83 chr2R:19292138-19292258 2.8e-05 46_[+1]_66 chr2L:3373424-3373544 2.8e-05 74_[+1]_38 chr3R:22025448-22025568 2.8e-05 77_[+1]_35 chrX:1380480-1380600 2.8e-05 17_[+1]_95 chr3L:4193884-4194004 2.8e-05 44_[+1]_68 chr2L:8437307-8437427 2.8e-05 88_[+1]_24 chr2L:22168539-22168659 2.8e-05 78_[+1]_34 chr2R:17420051-17420171 2.8e-05 98_[+1]_14 chr3L:8110312-8110432 3.7e-05 67_[+1]_45 chr3L:9456062-9456182 3.7e-05 20_[+1]_92 chr3R:26056537-26056657 5e-05 46_[+1]_66 chr3R:22487176-22487296 5.9e-05 21_[+1]_91 chr2R:21295593-21295713 6.5e-05 79_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCMCTG width=8 seqs=24 chr2R:24265251-24265371 ( 93) CAGCACTG 1 chr2R:23818403-23818523 ( 66) CAGCACTG 1 chr2L:7027048-7027168 ( 112) CAGCACTG 1 chr2R:8928079-8928199 ( 108) CAGCCCTG 1 chr2R:6636525-6636645 ( 2) CAGCCCTG 1 chrX:7901782-7901902 ( 54) CAGCCCTG 1 chr3L:16582900-16583020 ( 50) CAGCCCTG 1 chr3R:12422710-12422830 ( 66) CAGCCCTG 1 chr3L:17847020-17847140 ( 59) CAGCCCTG 1 chr3L:9899148-9899268 ( 77) CAACACTG 1 chrX:3968855-3968975 ( 30) CAACACTG 1 chr2R:19292138-19292258 ( 47) CAACACTG 1 chr2L:3373424-3373544 ( 75) CAACACTG 1 chr3R:22025448-22025568 ( 78) CAACACTG 1 chrX:1380480-1380600 ( 18) CAACACTG 1 chr3L:4193884-4194004 ( 45) CAACACTG 1 chr2L:8437307-8437427 ( 89) CAACACTG 1 chr2L:22168539-22168659 ( 79) CAACACTG 1 chr2R:17420051-17420171 ( 99) CAACACTG 1 chr3L:8110312-8110432 ( 68) CAACCCTG 1 chr3L:9456062-9456182 ( 21) CAACCCTG 1 chr3R:26056537-26056657 ( 47) CATCACTG 1 chr3R:22487176-22487296 ( 22) CATCCCTG 1 chr2R:21295593-21295713 ( 80) CAGCGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 4.6e-005 -1123 230 -1123 -1123 176 -1123 -1123 -1123 76 -1123 106 -185 -1123 230 -1123 -1123 98 89 -226 -1123 -1123 230 -1123 -1123 -1123 -1123 -1123 173 -1123 -1123 232 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 4.6e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.416667 0.083333 0.000000 1.000000 0.000000 0.000000 0.583333 0.375000 0.041667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-1 regular expression -------------------------------------------------------------------------------- CA[AG]C[AC]CTG -------------------------------------------------------------------------------- Time 8.78 secs. ******************************************************************************** ******************************************************************************** MOTIF RGCAGCTG MEME-2 width = 8 sites = 40 llr = 336 E-value = 2.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 52:a::3: pos.-specific C 21a::9:1 probability G 46::a1:9 matrix T :2::::8: bits 2.3 * * 2.1 * * 1.9 **** * 1.6 **** * Relative 1.4 **** * Entropy 1.2 **** * (12.1 bits) 0.9 ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCAGCTG consensus GT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21821905-21822025 87 5.87e-06 TAAATTCGCC GGCAGCTG AGCAAGATGT chr3R:19094847-19094967 37 5.87e-06 TTTGCTGCCA GGCAGCTG ATAGTGTGAC chr2R:5663798-5663918 55 5.87e-06 GAACACAAAC GGCAGCTG CTCAGGTGGC chr3R:11460922-11461042 110 5.87e-06 TTCGACTTTT GGCAGCTG GAA chr2L:20647653-20647773 68 5.87e-06 TTGACAGCCT GGCAGCTG TGACCCAAAG chr3R:18914726-18914846 58 1.45e-05 AAATAGACAC AGCAGCTG AGAGAGCGCG chr2L:1129643-1129763 73 1.45e-05 CCGCCTTATC AGCAGCTG GTTATTTAGA chr2R:1264729-1264849 90 1.45e-05 ATCACACCAC AGCAGCTG TTTGTTGTGT chr3R:21118931-21119051 59 2.05e-05 ataccttgta cgcagctg gtgggagtgc chr2L:6919970-6920090 12 2.62e-05 AAATTAATGT GGCAGCAG CGCAGAAAAA chr3L:13964694-13964814 22 3.51e-05 GCACAGAGTT GTCAGCTG CATCCGATGA chr3L:10691172-10691292 46 4.36e-05 GCTcagcagc agcagcag cagtagcagt chr2L:9917924-9918044 93 4.36e-05 AAAGTCCTGC AGCAGCAG CTCCTCTTCC chr2R:12274331-12274451 47 4.36e-05 agcaagaagc agcagcag CATCCACCAG chr3L:3197597-3197717 15 5.67e-05 ACTGGCGTCT ATCAGCTG ATTCGTGGAG chr3R:11244179-11244299 41 5.67e-05 GAAAGCCGCT ATCAGCTG TTTGCAAGCT chr2R:15542587-15542707 95 5.67e-05 CTTGCATTGG ATCAGCTG TTTGCGTGGC chr3L:9838628-9838748 30 5.67e-05 GATGCCGCCA ATCAGCTG TCTCCCGATA chr2R:24669221-24669341 55 5.67e-05 TGGCAACGTG ATCAGCTG TGCTGCAATC chr3L:4193884-4194004 86 5.67e-05 AGAAGAAGCA ATCAGCTG TTGCCGTTTT chr2L:3803900-3804020 102 6.53e-05 GGAGGAGCGA GACAGCTG ATGTGTGCAA chr3R:31805368-31805488 3 7.81e-05 CG AACAGCTG TTCGCCCAGC chr3L:2782125-2782245 95 7.81e-05 TGAATGTCCG AACAGCTG TTTACAATGA chr2L:20881502-20881622 56 8.39e-05 ATTTGCATAT CGCAGCAG AAATTGCTTG chr3L:2632533-2632653 76 8.39e-05 CACACACACC CGCAGCAG CTAGCCGACG chr2R:8928079-8928199 3 9.57e-05 GT GGCAGCTC TACGCAGCAT chrX:3968855-3968975 89 9.57e-05 GTGCCCGTCT GGCAGCTC CAAAATCCCG chr3L:14776110-14776230 45 9.57e-05 CACTAAAAAT GGCAGGTG CGTAGGGGGT chrX:2073458-2073578 48 9.57e-05 GTTCCACAGT GGCAGGTG TTTGTTTCCA chr3L:15234625-15234745 61 1.19e-04 TCGGCAAGGT GCCAGCTG TGGGTGTGAA chr2L:8437307-8437427 101 1.19e-04 ACACTGTTCA GCCAGCTG TTTACTCTTT chr2R:20529491-20529611 10 1.19e-04 CTACGATCA GTCAGCAG AAAAAAAAAA chr2L:15629945-15630065 90 1.37e-04 ACCATTGGAA AGCAGCTC AACTGTTAGT chr3L:199254-199374 60 1.37e-04 GCAGGAGGCA AGCAGGTG GCGTTCGTGT chr3L:3450505-3450625 5 1.67e-04 TTTT ATCAGCAG AAGAGTGAAG chr3R:13383024-13383144 22 1.67e-04 GGCATCAAGT CACAGCTG TAGAAATCAA chrX:13088240-13088360 89 1.67e-04 TGACGCGGTT CACAGCTG TTAATACCAC chrX:5671762-5671882 64 1.88e-04 GGACCACTGT AACAGCAG CCTTGCCAGA chr3R:22025448-22025568 108 2.00e-04 CCCCTGAAGC CGCAGGTG TTAGA chrX:5420826-5420946 38 2.11e-04 CAAATCGAAT GGCAGCAC ATGCACAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21821905-21822025 5.9e-06 86_[+2]_26 chr3R:19094847-19094967 5.9e-06 36_[+2]_76 chr2R:5663798-5663918 5.9e-06 54_[+2]_58 chr3R:11460922-11461042 5.9e-06 109_[+2]_3 chr2L:20647653-20647773 5.9e-06 67_[+2]_45 chr3R:18914726-18914846 1.5e-05 57_[+2]_55 chr2L:1129643-1129763 1.5e-05 72_[+2]_40 chr2R:1264729-1264849 1.5e-05 89_[+2]_23 chr3R:21118931-21119051 2.1e-05 58_[+2]_54 chr2L:6919970-6920090 2.6e-05 11_[+2]_101 chr3L:13964694-13964814 3.5e-05 21_[+2]_91 chr3L:10691172-10691292 4.4e-05 45_[+2]_67 chr2L:9917924-9918044 4.4e-05 92_[+2]_20 chr2R:12274331-12274451 4.4e-05 46_[+2]_66 chr3L:3197597-3197717 5.7e-05 14_[+2]_98 chr3R:11244179-11244299 5.7e-05 40_[+2]_72 chr2R:15542587-15542707 5.7e-05 94_[+2]_18 chr3L:9838628-9838748 5.7e-05 29_[+2]_83 chr2R:24669221-24669341 5.7e-05 54_[+2]_58 chr3L:4193884-4194004 5.7e-05 85_[+2]_27 chr2L:3803900-3804020 6.5e-05 101_[+2]_11 chr3R:31805368-31805488 7.8e-05 2_[+2]_110 chr3L:2782125-2782245 7.8e-05 94_[+2]_18 chr2L:20881502-20881622 8.4e-05 55_[+2]_57 chr3L:2632533-2632653 8.4e-05 75_[+2]_37 chr2R:8928079-8928199 9.6e-05 2_[+2]_110 chrX:3968855-3968975 9.6e-05 88_[+2]_24 chr3L:14776110-14776230 9.6e-05 44_[+2]_68 chrX:2073458-2073578 9.6e-05 47_[+2]_65 chr3L:15234625-15234745 0.00012 60_[+2]_52 chr2L:8437307-8437427 0.00012 100_[+2]_12 chr2R:20529491-20529611 0.00012 9_[+2]_103 chr2L:15629945-15630065 0.00014 89_[+2]_23 chr3L:199254-199374 0.00014 59_[+2]_53 chr3L:3450505-3450625 0.00017 4_[+2]_108 chr3R:13383024-13383144 0.00017 21_[+2]_91 chrX:13088240-13088360 0.00017 88_[+2]_24 chrX:5671762-5671882 0.00019 63_[+2]_49 chr3R:22025448-22025568 0.0002 107_[+2]_5 chrX:5420826-5420946 0.00021 37_[+2]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCAGCTG width=8 seqs=40 chr3L:21821905-21822025 ( 87) GGCAGCTG 1 chr3R:19094847-19094967 ( 37) GGCAGCTG 1 chr2R:5663798-5663918 ( 55) GGCAGCTG 1 chr3R:11460922-11461042 ( 110) GGCAGCTG 1 chr2L:20647653-20647773 ( 68) GGCAGCTG 1 chr3R:18914726-18914846 ( 58) AGCAGCTG 1 chr2L:1129643-1129763 ( 73) AGCAGCTG 1 chr2R:1264729-1264849 ( 90) AGCAGCTG 1 chr3R:21118931-21119051 ( 59) CGCAGCTG 1 chr2L:6919970-6920090 ( 12) GGCAGCAG 1 chr3L:13964694-13964814 ( 22) GTCAGCTG 1 chr3L:10691172-10691292 ( 46) AGCAGCAG 1 chr2L:9917924-9918044 ( 93) AGCAGCAG 1 chr2R:12274331-12274451 ( 47) AGCAGCAG 1 chr3L:3197597-3197717 ( 15) ATCAGCTG 1 chr3R:11244179-11244299 ( 41) ATCAGCTG 1 chr2R:15542587-15542707 ( 95) ATCAGCTG 1 chr3L:9838628-9838748 ( 30) ATCAGCTG 1 chr2R:24669221-24669341 ( 55) ATCAGCTG 1 chr3L:4193884-4194004 ( 86) ATCAGCTG 1 chr2L:3803900-3804020 ( 102) GACAGCTG 1 chr3R:31805368-31805488 ( 3) AACAGCTG 1 chr3L:2782125-2782245 ( 95) AACAGCTG 1 chr2L:20881502-20881622 ( 56) CGCAGCAG 1 chr3L:2632533-2632653 ( 76) CGCAGCAG 1 chr2R:8928079-8928199 ( 3) GGCAGCTC 1 chrX:3968855-3968975 ( 89) GGCAGCTC 1 chr3L:14776110-14776230 ( 45) GGCAGGTG 1 chrX:2073458-2073578 ( 48) GGCAGGTG 1 chr3L:15234625-15234745 ( 61) GCCAGCTG 1 chr2L:8437307-8437427 ( 101) GCCAGCTG 1 chr2R:20529491-20529611 ( 10) GTCAGCAG 1 chr2L:15629945-15630065 ( 90) AGCAGCTC 1 chr3L:199254-199374 ( 60) AGCAGGTG 1 chr3L:3450505-3450625 ( 5) ATCAGCAG 1 chr3R:13383024-13383144 ( 22) CACAGCTG 1 chrX:13088240-13088360 ( 89) CACAGCTG 1 chrX:5671762-5671882 ( 64) AACAGCAG 1 chr3R:22025448-22025568 ( 108) CGCAGGTG 1 chrX:5420826-5420946 ( 38) GGCAGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 2.6e-001 61 -44 100 -1197 -98 -202 152 -42 -1197 230 -1197 -1197 176 -1197 -1197 -1197 -1197 -1197 232 -1197 -1197 215 -100 -1197 -24 -1197 -1197 131 -1197 -102 217 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 2.6e-001 0.450000 0.150000 0.400000 0.000000 0.150000 0.050000 0.575000 0.225000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.100000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCTG MEME-2 regular expression -------------------------------------------------------------------------------- [AG][GT]CAGC[TA]G -------------------------------------------------------------------------------- Time 15.00 secs. ******************************************************************************** ******************************************************************************** MOTIF YACAGTGG MEME-3 width = 8 sites = 12 llr = 127 E-value = 5.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a:::: pos.-specific C 7:9::::: probability G ::1:a:aa matrix T 3::::a:: bits 2.3 * ** 2.1 * ** 1.9 **** ** 1.6 ******* Relative 1.4 ******* Entropy 1.2 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACAGTGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19165001-19165121 14 8.66e-06 CGCGCTCACG CACAGTGG TCGCTTTTGT chrX:1858946-1859066 77 8.66e-06 AGAATCCATG CACAGTGG GTACTACTTG chr2R:8928079-8928199 43 8.66e-06 TCTTGCCACG CACAGTGG CGTCGCGCAG chr3L:15234625-15234745 36 8.66e-06 ACATAGTGCG CACAGTGG GCCCAAATCG chrX:8491919-8492039 63 8.66e-06 TAGCGGTGCC CACAGTGG CGGCGAGAAA chr3L:16714290-16714410 78 8.66e-06 aacaaacgaa caCAGTGG CCCCTCCGCA chrX:3950226-3950346 30 8.66e-06 AAAGAGCTCG CACAGTGG GTGCGACAAG chrX:11137689-11137809 60 2.16e-05 AAATTGCTTG TACAGTGG AAACACCCAC chr3L:3814573-3814693 82 2.16e-05 CGGCAACAAG TACAGTGG AACACCGCTT chr3R:31805368-31805488 25 2.16e-05 CCCAGCCAGG TACAGTGG GACCAAGGCG chr3L:3544264-3544384 11 2.16e-05 TAAACTCAAA TACAGTGG TCCCTTGAAG chrX:2720287-2720407 69 3.01e-05 GCCAGACGAT CAGAGTGG TTCGATGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19165001-19165121 8.7e-06 13_[+3]_99 chrX:1858946-1859066 8.7e-06 76_[+3]_36 chr2R:8928079-8928199 8.7e-06 42_[+3]_70 chr3L:15234625-15234745 8.7e-06 35_[+3]_77 chrX:8491919-8492039 8.7e-06 62_[+3]_50 chr3L:16714290-16714410 8.7e-06 77_[+3]_35 chrX:3950226-3950346 8.7e-06 29_[+3]_83 chrX:11137689-11137809 2.2e-05 59_[+3]_53 chr3L:3814573-3814693 2.2e-05 81_[+3]_31 chr3R:31805368-31805488 2.2e-05 24_[+3]_88 chr3L:3544264-3544384 2.2e-05 10_[+3]_102 chrX:2720287-2720407 3e-05 68_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YACAGTGG width=8 seqs=12 chr3R:19165001-19165121 ( 14) CACAGTGG 1 chrX:1858946-1859066 ( 77) CACAGTGG 1 chr2R:8928079-8928199 ( 43) CACAGTGG 1 chr3L:15234625-15234745 ( 36) CACAGTGG 1 chrX:8491919-8492039 ( 63) CACAGTGG 1 chr3L:16714290-16714410 ( 78) CACAGTGG 1 chrX:3950226-3950346 ( 30) CACAGTGG 1 chrX:11137689-11137809 ( 60) TACAGTGG 1 chr3L:3814573-3814693 ( 82) TACAGTGG 1 chr3R:31805368-31805488 ( 25) TACAGTGG 1 chr3L:3544264-3544384 ( 11) TACAGTGG 1 chrX:2720287-2720407 ( 69) CAGAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 5.7e+001 -1023 172 -1023 14 176 -1023 -1023 -1023 -1023 217 -126 -1023 176 -1023 -1023 -1023 -1023 -1023 232 -1023 -1023 -1023 -1023 173 -1023 -1023 232 -1023 -1023 -1023 232 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.7e+001 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]ACAGTGG -------------------------------------------------------------------------------- Time 21.17 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGCTG MEME-4 width = 8 sites = 21 llr = 196 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:::::: pos.-specific C a::::8:1 probability G ::a3a::9 matrix T :1:7:2a: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * * * Relative 1.4 *** **** Entropy 1.2 *** **** (13.5 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGCTG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24265251-24265371 60 8.87e-06 tcaaatttaC CAGTGCTG GAAAGCACAT chrX:1477042-1477162 20 8.87e-06 CGAGATAAAC CAGTGCTG TAAAGCGCCG chr3L:8110312-8110432 33 8.87e-06 CTGTCTAGGC CAGTGCTG TGAAGCGCGC chr2R:18660605-18660725 88 8.87e-06 CGCTGCTCTC CAGTGCTG GTTAATTTCC chr3R:29806806-29806926 28 8.87e-06 CAGATGTTTT CAGTGCTG CAGCTTTGGC chrX:5420826-5420946 55 1.47e-05 CATGCACAAA CAGGGCTG CCCACGCTCA chr3L:9899148-9899268 43 1.47e-05 AACTGTTGAC CAGGGCTG GAAACGGCAA chr2R:21295593-21295713 41 1.47e-05 GTAACGCCAC CAGGGCTG CAGACACGCC chr3R:18215451-18215571 9 1.47e-05 CGTAAGAC CAGGGCTG CAACTACGAA chr2R:15542587-15542707 55 2.79e-05 TGATTGGAAG CAGTGTTG GACAGCGCTC chr2R:16202853-16202973 68 2.79e-05 CGCCAGCGAT CAGTGTTG CCAATTTAGC chr2L:12096464-12096584 60 2.79e-05 CTGTGTGGGG CAGTGTTG GAAAACGTGC chr2R:22886487-22886607 81 3.67e-05 CGCCGGCGAC CAGGGTTG GCAAATCGGC chr3L:3225369-3225489 16 3.67e-05 TTGCACGTTT CAGGGTTG TCGCTTCGCA chrX:1380480-1380600 8 5.16e-05 TCTGGGC CAGCGCTG CACAACACTG chr3L:9838628-9838748 86 5.16e-05 AAAATGGGAA CAGTGCTC GCCATACCTA chr2L:1987805-1987925 32 5.16e-05 GAAAGCTCGC CAGTGCTC CCCTTTTGGA chr2L:544458-544578 86 6.07e-05 CTCCGCCATG CTGTGCTG TCCAATCCAA chr2R:6811321-6811441 40 6.07e-05 ATATTTGCGC CTGTGCTG CGAACTCATT chr3L:10691172-10691292 60 8.14e-05 gcagcagtag cagtgcag cggcaTCCTT chr2R:23668841-23668961 34 9.48e-05 TTGAATTTGC CAGTGCTT TTGGTTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24265251-24265371 8.9e-06 59_[+4]_53 chrX:1477042-1477162 8.9e-06 19_[+4]_93 chr3L:8110312-8110432 8.9e-06 32_[+4]_80 chr2R:18660605-18660725 8.9e-06 87_[+4]_25 chr3R:29806806-29806926 8.9e-06 27_[+4]_85 chrX:5420826-5420946 1.5e-05 54_[+4]_58 chr3L:9899148-9899268 1.5e-05 42_[+4]_70 chr2R:21295593-21295713 1.5e-05 40_[+4]_72 chr3R:18215451-18215571 1.5e-05 8_[+4]_104 chr2R:15542587-15542707 2.8e-05 54_[+4]_58 chr2R:16202853-16202973 2.8e-05 67_[+4]_45 chr2L:12096464-12096584 2.8e-05 59_[+4]_53 chr2R:22886487-22886607 3.7e-05 80_[+4]_32 chr3L:3225369-3225489 3.7e-05 15_[+4]_97 chrX:1380480-1380600 5.2e-05 7_[+4]_105 chr3L:9838628-9838748 5.2e-05 85_[+4]_27 chr2L:1987805-1987925 5.2e-05 31_[+4]_81 chr2L:544458-544578 6.1e-05 85_[+4]_27 chr2R:6811321-6811441 6.1e-05 39_[+4]_73 chr3L:10691172-10691292 8.1e-05 59_[+4]_53 chr2R:23668841-23668961 9.5e-05 33_[+4]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGCTG width=8 seqs=21 chr2R:24265251-24265371 ( 60) CAGTGCTG 1 chrX:1477042-1477162 ( 20) CAGTGCTG 1 chr3L:8110312-8110432 ( 33) CAGTGCTG 1 chr2R:18660605-18660725 ( 88) CAGTGCTG 1 chr3R:29806806-29806926 ( 28) CAGTGCTG 1 chrX:5420826-5420946 ( 55) CAGGGCTG 1 chr3L:9899148-9899268 ( 43) CAGGGCTG 1 chr2R:21295593-21295713 ( 41) CAGGGCTG 1 chr3R:18215451-18215571 ( 9) CAGGGCTG 1 chr2R:15542587-15542707 ( 55) CAGTGTTG 1 chr2R:16202853-16202973 ( 68) CAGTGTTG 1 chr2L:12096464-12096584 ( 60) CAGTGTTG 1 chr2R:22886487-22886607 ( 81) CAGGGTTG 1 chr3L:3225369-3225489 ( 16) CAGGGTTG 1 chrX:1380480-1380600 ( 8) CAGCGCTG 1 chr3L:9838628-9838748 ( 86) CAGTGCTC 1 chr2L:1987805-1987925 ( 32) CAGTGCTC 1 chr2L:544458-544578 ( 86) CTGTGCTG 1 chr2R:6811321-6811441 ( 40) CTGTGCTG 1 chr3L:10691172-10691292 ( 60) CAGTGCAG 1 chr2R:23668841-23668961 ( 34) CAGTGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8872 E= 1.0e+003 -1104 230 -1104 -1104 161 -1104 -1104 -166 -1104 -1104 232 -1104 -1104 -209 51 114 -1104 -1104 232 -1104 -1104 191 -1104 -34 -263 -1104 -1104 166 -1104 -109 210 -266 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.0e+003 0.000000 1.000000 0.000000 0.000000 0.904762 0.000000 0.000000 0.095238 0.000000 0.000000 1.000000 0.000000 0.000000 0.047619 0.285714 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.761905 0.000000 0.238095 0.047619 0.000000 0.000000 0.952381 0.000000 0.095238 0.857143 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-4 regular expression -------------------------------------------------------------------------------- CAG[TG]G[CT]TG -------------------------------------------------------------------------------- Time 27.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGGGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 3.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::::::: probability G aa:aaaaa matrix T :::::::: bits 2.3 ** ***** 2.1 ** ***** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19268736-19268856 41 3.78e-06 CGCTGAATTC GGAGGGGG GAAGTTGCCA chr2L:20079076-20079196 21 3.78e-06 CCCTTTAAAA GGAGGGGG GTTTTGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19268736-19268856 3.8e-06 40_[+5]_72 chr2L:20079076-20079196 3.8e-06 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGGGG width=8 seqs=2 chrX:19268736-19268856 ( 41) GGAGGGGG 1 chr2L:20079076-20079196 ( 21) GGAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.2e+004 -765 -765 232 -765 -765 -765 232 -765 175 -765 -765 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGAGGGGG -------------------------------------------------------------------------------- Time 33.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6811321-6811441 8.28e-02 39_[+4(6.07e-05)]_73 chrX:9156375-9156495 9.57e-02 120 chr2L:22982255-22982375 1.07e-01 120 chrX:11391687-11391807 6.07e-01 120 chr2L:20647653-20647773 3.75e-02 67_[+2(5.87e-06)]_45 chr2L:2735120-2735240 3.38e-01 120 chr2L:20079076-20079196 5.83e-03 20_[+5(3.78e-06)]_92 chr2R:20529491-20529611 3.53e-02 120 chr2R:11044602-11044722 9.54e-01 120 chr2L:21102641-21102761 1.62e-01 120 chr3L:2632533-2632653 4.56e-02 75_[+2(8.39e-05)]_37 chr2L:3058880-3059000 3.15e-01 120 chr2L:12096464-12096584 4.22e-02 59_[+4(2.79e-05)]_53 chrX:17578285-17578405 9.27e-01 120 chr2L:8087362-8087482 9.24e-01 120 chr3R:20311110-20311230 6.03e-01 120 chrX:3538908-3539028 3.32e-01 120 chr2L:18441378-18441498 2.61e-01 120 chr3R:31220886-31221006 6.28e-02 120 chr2R:16856176-16856296 5.28e-01 120 chrX:13817559-13817679 8.68e-01 120 chr3L:17847020-17847140 2.10e-02 58_[+1(1.48e-05)]_54 chrX:23010786-23010906 4.35e-01 120 chr3R:26556025-26556145 7.18e-01 120 chr3R:18226787-18226907 7.31e-01 120 chr2R:1264729-1264849 3.28e-02 89_[+2(1.45e-05)]_23 chr2R:10122569-10122689 1.00e+00 120 chr2L:6479742-6479862 3.22e-01 120 chrX:13253242-13253362 5.24e-01 120 chr2L:1987805-1987925 3.22e-02 31_[+4(5.16e-05)]_81 chrX:12611724-12611844 6.14e-01 120 chr3L:16149958-16150078 5.52e-01 120 chr3R:12422710-12422830 1.13e-02 65_[+1(1.48e-05)]_47 chr3R:26056537-26056657 3.95e-02 46_[+1(5.00e-05)]_66 chrX:3950226-3950346 5.80e-03 29_[+3(8.66e-06)]_83 chr2R:18172409-18172529 7.68e-01 120 chrX:20433582-20433702 8.93e-01 120 chr3L:2782125-2782245 6.13e-02 94_[+2(7.81e-05)]_18 chr2L:13784014-13784134 9.32e-03 120 chr2L:16727547-16727667 6.02e-02 120 chrX:3714087-3714207 1.00e+00 120 chr3R:8009260-8009380 3.22e-01 120 chr3L:3544264-3544384 1.93e-02 10_[+3(2.16e-05)]_102 chr2L:16817754-16817874 1.00e+00 120 chr2R:19971535-19971655 4.30e-01 120 chr3R:21118931-21119051 9.59e-03 58_[+2(2.05e-05)]_54 chr2L:13784231-13784351 4.58e-01 120 chr2L:1129643-1129763 1.86e-02 72_[+2(1.45e-05)]_40 chr3R:11460922-11461042 7.31e-02 109_[+2(5.87e-06)]_3 chrX:948261-948381 9.82e-01 120 chr2L:5209893-5210013 8.44e-01 120 chr2R:23997273-23997393 2.71e-01 120 chr2R:11662219-11662339 5.61e-01 120 chr3L:1609708-1609828 9.99e-01 120 chr3L:10866767-10866887 9.45e-01 120 chr3L:12526432-12526552 8.00e-01 120 chr4:670979-671099 5.42e-01 120 chr2L:6919970-6920090 3.04e-03 11_[+2(2.62e-05)]_101 chr3R:28600541-28600661 8.10e-01 120 chr3L:16714290-16714410 1.55e-02 77_[+3(8.66e-06)]_35 chr3L:3770994-3771114 7.02e-01 120 chr3R:18914726-18914846 9.65e-03 57_[+2(1.45e-05)]_55 chr2R:5663798-5663918 4.43e-02 54_[+2(5.87e-06)]_58 chr3R:15963942-15964062 4.64e-01 120 chrX:16781255-16781375 5.20e-01 120 chr3L:166630-166750 7.40e-01 120 chr2R:23062546-23062666 7.99e-01 120 chr2R:21470658-21470778 1.70e-01 120 chr2L:8198919-8199039 7.74e-01 120 chrX:13088240-13088360 8.46e-02 120 chr4:179435-179555 9.26e-01 120 chrX:20434584-20434704 7.45e-01 120 chr2R:17420051-17420171 1.13e-02 98_[+1(2.78e-05)]_14 chr2L:22168539-22168659 2.67e-02 60_[+1(9.19e-05)]_10_[+1(2.78e-05)]_\ 34 chr3L:22277369-22277489 3.74e-01 120 chr2L:5325074-5325194 1.00e+00 120 chr3R:14356774-14356894 6.71e-01 120 chr2R:22373568-22373688 8.43e-01 120 chrX:8491919-8492039 2.85e-02 62_[+3(8.66e-06)]_50 chr3L:3970518-3970638 6.21e-01 120 chr3L:1151790-1151910 9.29e-01 120 chr3L:5182433-5182553 8.21e-02 120 chr3R:13383024-13383144 8.97e-02 120 chr2R:13586452-13586572 9.06e-01 120 chr3R:31805368-31805488 1.47e-04 2_[+2(7.81e-05)]_14_[+3(2.16e-05)]_\ 88 chr2R:20270953-20271073 1.00e+00 120 chr3R:29806806-29806926 6.66e-03 27_[+4(8.87e-06)]_85 chr2R:25183153-25183273 4.52e-01 120 chr2L:8437307-8437427 1.31e-04 52_[+1(8.29e-05)]_28_[+1(2.78e-05)]_\ 24 chr3R:15139559-15139679 3.51e-01 120 chr3L:8411631-8411751 9.97e-01 120 chr2R:17161036-17161156 1.18e-01 120 chr3R:5065153-5065273 5.51e-01 120 chr3L:4193884-4194004 2.53e-03 44_[+1(2.78e-05)]_33_[+2(5.67e-05)]_\ 27 chrX:2720287-2720407 9.00e-02 68_[+3(3.01e-05)]_44 chr3L:3078580-3078700 8.39e-01 120 chr3R:8356900-8357020 3.92e-02 91_[+3(4.28e-05)]_21 chr3R:8784936-8785056 9.98e-01 120 chr3L:4413162-4413282 8.80e-01 120 chr3R:23228792-23228912 9.63e-01 120 chrX:8112865-8112985 9.83e-01 120 chr3R:27557049-27557169 4.38e-01 120 chrX:18405122-18405242 8.78e-02 120 chr2R:14604260-14604380 1.14e-01 120 chr3R:19094847-19094967 1.48e-02 36_[+2(5.87e-06)]_76 chr2R:16202853-16202973 1.27e-01 67_[+4(2.79e-05)]_45 chrX:1240048-1240168 4.13e-01 120 chr2L:544458-544578 1.42e-01 85_[+4(6.07e-05)]_27 chr2R:15532180-15532300 4.20e-01 120 chr3L:17009781-17009901 4.91e-01 120 chr2L:7027048-7027168 2.64e-03 111_[+1(8.79e-06)]_1 chr3L:3225369-3225489 5.99e-02 15_[+4(3.67e-05)]_97 chr2L:10437471-10437591 1.95e-01 120 chr2L:22130009-22130129 1.00e+00 120 chr2L:1177612-1177732 2.77e-01 120 chr3L:16147912-16148032 5.59e-01 120 chr2R:23818403-23818523 1.82e-02 65_[+1(8.79e-06)]_47 chr3L:15563550-15563670 8.25e-01 120 chrX:18366654-18366774 1.14e-01 8_[+3(8.39e-05)]_104 chr3R:10024188-10024308 4.68e-01 120 chr2R:10066605-10066725 8.69e-01 120 chr3L:21321906-21322026 9.86e-01 120 chr3L:8720144-8720264 5.55e-03 120 chr2R:24669221-24669341 6.49e-03 54_[+2(5.67e-05)]_58 chr2R:14247552-14247672 8.83e-01 120 chr4:1030940-1031060 3.63e-01 120 chrX:19348975-19349095 8.64e-01 120 chrX:2073458-2073578 8.13e-04 41_[+3(8.66e-06)]_71 chr3L:9838628-9838748 3.99e-03 29_[+2(5.67e-05)]_48_[+4(5.16e-05)]_\ 27 chrX:1380480-1380600 8.45e-03 7_[+4(5.16e-05)]_2_[+1(2.78e-05)]_\ 95 chr3L:3450505-3450625 1.28e-01 120 chr3L:14776110-14776230 1.92e-03 44_[+2(9.57e-05)]_68 chr2R:15542587-15542707 1.67e-03 54_[+4(2.79e-05)]_32_[+2(5.67e-05)]_\ 18 chrX:3399413-3399533 4.07e-01 120 chr2L:1837843-1837963 9.32e-01 120 chrX:18494273-18494393 7.98e-01 120 chr3R:23358979-23359099 3.39e-01 120 chr3L:20518244-20518364 1.00e+00 120 chr2R:23202146-23202266 9.67e-01 120 chr2R:23668841-23668961 2.78e-01 33_[+4(9.48e-05)]_79 chr2R:7987826-7987946 8.91e-01 120 chr2R:10806712-10806832 7.30e-01 120 chr3R:8564035-8564155 6.68e-01 120 chr3L:17616978-17617098 5.88e-01 120 chr2L:14359125-14359245 7.90e-01 120 chrX:14169213-14169333 6.98e-01 120 chr3R:10331224-10331344 1.31e-01 120 chr2R:17536396-17536516 6.92e-01 120 chr3R:32051795-32051915 6.54e-01 120 chr2R:12274331-12274451 2.23e-02 43_[+2(4.36e-05)]_69 chrX:3862423-3862543 1.04e-01 120 chr3L:199254-199374 1.84e-01 120 chr3L:3814573-3814693 1.51e-03 81_[+3(2.16e-05)]_31 chr3L:15234625-15234745 3.96e-05 35_[+3(8.66e-06)]_77 chr2L:9917924-9918044 6.06e-03 92_[+2(4.36e-05)]_20 chr3R:18215451-18215571 4.93e-02 8_[+4(1.47e-05)]_104 chr3L:16582900-16583020 1.97e-02 49_[+1(1.48e-05)]_63 chr3L:13929290-13929410 2.23e-01 120 chr3L:13964694-13964814 7.89e-03 21_[+2(3.51e-05)]_91 chrX:19146446-19146566 9.81e-01 120 chr3L:1947631-1947751 6.77e-01 120 chrX:5671762-5671882 4.43e-02 120 chr3R:6008403-6008523 3.83e-01 120 chr2R:22641251-22641371 6.37e-02 120 chr2R:5122237-5122357 7.62e-01 120 chr2L:20715128-20715248 9.35e-01 120 chrX:18783651-18783771 6.35e-01 120 chr3R:22025448-22025568 2.07e-03 77_[+1(2.78e-05)]_35 chrX:11715454-11715574 4.84e-03 120 chr2R:18660605-18660725 1.39e-02 87_[+4(8.87e-06)]_25 chr3R:20574845-20574965 1.48e-01 120 chr3R:28599591-28599711 9.96e-01 120 chrX:2591728-2591848 3.16e-01 120 chr3R:10139844-10139964 9.71e-01 120 chr2L:1158190-1158310 8.48e-01 120 chr3R:15472878-15472998 8.32e-01 120 chrX:19268736-19268856 1.81e-02 40_[+5(3.78e-06)]_72 chr3R:16704370-16704490 8.59e-01 120 chrX:8437062-8437182 4.32e-01 120 chr3R:11244179-11244299 2.22e-01 40_[+2(5.67e-05)]_72 chr3L:16544374-16544494 3.99e-01 120 chr2R:12200651-12200771 3.91e-01 120 chr3R:16355521-16355641 3.66e-02 120 chr3L:9456062-9456182 1.88e-02 20_[+1(3.67e-05)]_92 chr4:1051421-1051541 7.53e-01 120 chr2R:8650578-8650698 8.72e-01 120 chr2L:2214098-2214218 9.97e-01 120 chrX:11137689-11137809 9.34e-02 59_[+3(2.16e-05)]_53 chr3L:11429796-11429916 9.94e-01 120 chr3L:8110312-8110432 6.93e-04 32_[+4(8.87e-06)]_27_[+1(3.67e-05)]_\ 45 chr2L:3373424-3373544 4.17e-02 74_[+1(2.78e-05)]_38 chr2R:8947267-8947387 9.00e-02 120 chr2R:12772835-12772955 9.99e-01 120 chr2L:7601999-7602119 9.97e-01 120 chr3L:21821905-21822025 7.23e-03 86_[+2(5.87e-06)]_26 chr3R:12997769-12997889 1.00e+00 120 chr2L:15629945-15630065 2.96e-01 120 chr2R:17062614-17062734 1.25e-01 120 chrX:5665925-5666045 3.16e-01 120 chrX:10600680-10600800 5.22e-01 120 chrX:7901782-7901902 5.82e-02 22_[+1(5.92e-05)]_23_[+1(1.48e-05)]_\ 59 chr3L:7861166-7861286 8.67e-01 120 chr2R:19292138-19292258 4.53e-02 46_[+1(2.78e-05)]_66 chr3R:21161847-21161967 6.59e-02 120 chr3L:17042647-17042767 1.46e-01 120 chrX:3968855-3968975 8.01e-04 [+1(7.39e-05)]_21_[+1(2.78e-05)]_51_\ [+2(9.57e-05)]_24 chr3L:22065803-22065923 3.19e-01 120 chr2R:13008326-13008446 8.33e-01 120 chr2R:6636525-6636645 1.39e-02 1_[+1(1.48e-05)]_111 chr2R:21295593-21295713 3.00e-04 40_[+4(1.47e-05)]_31_[+4(5.16e-05)]_\ 33 chrX:1477042-1477162 3.10e-02 19_[+4(8.87e-06)]_93 chr3R:23679964-23680084 3.40e-01 120 chr3L:12803825-12803945 9.29e-01 120 chr3R:22487176-22487296 8.38e-02 21_[+1(5.92e-05)]_91 chr3R:22628061-22628181 9.68e-01 120 chr3L:10691172-10691292 7.18e-03 39_[+2(4.36e-05)]_1_[+2(4.36e-05)]_\ 3_[+4(8.14e-05)]_53 chr2R:22886487-22886607 2.50e-02 80_[+4(3.67e-05)]_32 chr4:867072-867192 7.27e-01 120 chrX:16834306-16834426 9.82e-01 120 chr2R:14411696-14411816 7.85e-01 120 chr2L:14024802-14024922 8.73e-01 120 chr2L:20881502-20881622 1.92e-01 55_[+2(8.39e-05)]_57 chr2R:8928079-8928199 1.13e-06 2_[+2(9.57e-05)]_12_[+4(9.48e-05)]_\ 12_[+3(8.66e-06)]_57_[+1(1.48e-05)]_5 chr3L:9899148-9899268 6.21e-04 42_[+4(1.47e-05)]_26_[+1(2.78e-05)]_\ 11_[+4(3.67e-05)]_17 chr3R:23176859-23176979 2.93e-01 120 chr2L:3882344-3882464 6.06e-01 120 chrX:12462901-12463021 9.51e-01 120 chr2R:20906647-20906767 3.58e-01 120 chrX:4262745-4262865 4.45e-01 120 chrX:10184781-10184901 9.98e-01 120 chr3R:30280437-30280557 1.95e-01 120 chr2R:19128033-19128153 4.46e-02 120 chr2R:11204394-11204514 9.63e-01 120 chrX:5420826-5420946 2.66e-03 54_[+4(1.47e-05)]_58 chr3L:4186775-4186895 1.51e-01 120 chrX:15739023-15739143 9.98e-01 120 chrX:16102500-16102620 8.89e-01 120 chr3R:25027706-25027826 8.90e-01 120 chr3R:5861590-5861710 9.69e-01 120 chr2R:20832433-20832553 2.69e-01 120 chr2L:3803900-3804020 1.19e-01 101_[+2(6.53e-05)]_11 chrX:1858946-1859066 4.35e-02 76_[+3(8.66e-06)]_36 chr3R:23028655-23028775 3.87e-01 120 chr3L:13486729-13486849 2.60e-01 120 chr3L:3197597-3197717 9.43e-02 14_[+2(5.67e-05)]_98 chr2L:20918886-20919006 2.74e-02 120 chr2R:24265251-24265371 9.59e-05 59_[+4(8.87e-06)]_25_[+1(8.79e-06)]_\ 20 chr3R:21613137-21613257 8.72e-01 120 chr3R:19165001-19165121 1.49e-02 13_[+3(8.66e-06)]_99 chr2L:18859308-18859428 2.94e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************