******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ftz-f1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:18057172-18057292 1.0000 120 chr2R:11668547-11668667 1.0000 120 chr2L:1634619-1634739 1.0000 120 chr3L:2499250-2499370 1.0000 120 chrX:9897741-9897861 1.0000 120 chr3L:18798982-18799102 1.0000 120 chr3L:8682070-8682190 1.0000 120 chrX:10369407-10369527 1.0000 120 chr3L:9423606-9423726 1.0000 120 chr2R:17402145-17402265 1.0000 120 chrX:623494-623614 1.0000 120 chr3L:17476652-17476772 1.0000 120 chr3L:17605009-17605129 1.0000 120 chr2L:19402814-19402934 1.0000 120 chr3R:31603364-31603484 1.0000 120 chr3R:5860869-5860989 1.0000 120 chr2L:13459136-13459256 1.0000 120 chr3L:3407614-3407734 1.0000 120 chr3R:18733732-18733852 1.0000 120 chr3L:18061380-18061500 1.0000 120 chr3L:13866423-13866543 1.0000 120 chr3L:17615428-17615548 1.0000 120 chrX:17090530-17090650 1.0000 120 chr3L:17924485-17924605 1.0000 120 chr3R:16627003-16627123 1.0000 120 chr2R:16331957-16332077 1.0000 120 chr3R:16147240-16147360 1.0000 120 chr3R:12561295-12561415 1.0000 120 chr3L:18795983-18796103 1.0000 120 chr3L:17928283-17928403 1.0000 120 chrX:16767003-16767123 1.0000 120 chr3R:9437850-9437970 1.0000 120 chr2L:1632069-1632189 1.0000 120 chr3L:5632569-5632689 1.0000 120 chr3R:16068348-16068468 1.0000 120 chr3L:9889300-9889420 1.0000 120 chr3R:31039012-31039132 1.0000 120 chr2L:1218582-1218702 1.0000 120 chr2R:16572447-16572567 1.0000 120 chr3L:632245-632365 1.0000 120 chr3L:21219322-21219442 1.0000 120 chr2R:21365540-21365660 1.0000 120 chr3L:17966298-17966418 1.0000 120 chr3R:13972766-13972886 1.0000 120 chr3R:28897999-28898119 1.0000 120 chr3L:13019380-13019500 1.0000 120 chr2R:18535954-18536074 1.0000 120 chr2L:1638299-1638419 1.0000 120 chr2L:15003935-15004055 1.0000 120 chr3R:4650268-4650388 1.0000 120 chr3L:5808670-5808790 1.0000 120 chrX:9878252-9878372 1.0000 120 chr3L:22733692-22733812 1.0000 120 chr3R:15136928-15137048 1.0000 120 chr2R:24956180-24956300 1.0000 120 chr3R:9433909-9434029 1.0000 120 chr2R:22925638-22925758 1.0000 120 chr2L:14027975-14028095 1.0000 120 chr2L:15035614-15035734 1.0000 120 chr3R:27609798-27609918 1.0000 120 chr3R:31604734-31604854 1.0000 120 chr3R:29993031-29993151 1.0000 120 chr3R:9626389-9626509 1.0000 120 chr3R:26463160-26463280 1.0000 120 chrX:1287578-1287698 1.0000 120 chr3L:11112525-11112645 1.0000 120 chrX:15643256-15643376 1.0000 120 chr3L:5607982-5608102 1.0000 120 chr2R:10282482-10282602 1.0000 120 chr3L:18782798-18782918 1.0000 120 chr2R:17695402-17695522 1.0000 120 chr2L:5742562-5742682 1.0000 120 chr3L:15587638-15587758 1.0000 120 chrX:2625097-2625217 1.0000 120 chr3R:27153995-27154115 1.0000 120 chr3R:9527633-9527753 1.0000 120 chr2R:12597076-12597196 1.0000 120 chr3L:18046825-18046945 1.0000 120 chr3R:22524998-22525118 1.0000 120 chr3L:9846165-9846285 1.0000 120 chr3R:14434341-14434461 1.0000 120 chr3L:18305930-18306050 1.0000 120 chr2R:9550984-9551104 1.0000 120 chr3R:19902462-19902582 1.0000 120 chr3L:2888283-2888403 1.0000 120 chr2R:11628885-11629005 1.0000 120 chrX:16696799-16696919 1.0000 120 chr3R:6383520-6383640 1.0000 120 chrX:19527613-19527733 1.0000 120 chr3L:9431960-9432080 1.0000 120 chr3L:21031070-21031190 1.0000 120 chr3L:649539-649659 1.0000 120 chr2L:9244414-9244534 1.0000 120 chr3R:29116938-29117058 1.0000 120 chr2R:19126248-19126368 1.0000 120 chr2L:2731788-2731908 1.0000 120 chr3L:455329-455449 1.0000 120 chr3L:17916156-17916276 1.0000 120 chr3L:1204384-1204504 1.0000 120 chr2L:6565092-6565212 1.0000 120 chr3L:9850267-9850387 1.0000 120 chr3R:6419259-6419379 1.0000 120 chr3R:16218421-16218541 1.0000 120 chr3L:7871483-7871603 1.0000 120 chrX:1262639-1262759 1.0000 120 chr3R:30483519-30483639 1.0000 120 chr3R:22598888-22599008 1.0000 120 chr3R:26955698-26955818 1.0000 120 chr3R:20168137-20168257 1.0000 120 chr3R:4228512-4228632 1.0000 120 chr3L:20731572-20731692 1.0000 120 chr2R:16583105-16583225 1.0000 120 chr2L:5975175-5975295 1.0000 120 chr3L:12203554-12203674 1.0000 120 chr2L:12052875-12052995 1.0000 120 chr2R:7053707-7053827 1.0000 120 chr3L:6193842-6193962 1.0000 120 chr2L:13014329-13014449 1.0000 120 chr2R:23982469-23982589 1.0000 120 chr2L:483535-483655 1.0000 120 chr3L:21261107-21261227 1.0000 120 chr3L:20777633-20777753 1.0000 120 chr3L:17964103-17964223 1.0000 120 chr3R:23220081-23220201 1.0000 120 chr3R:10356078-10356198 1.0000 120 chr3R:7498618-7498738 1.0000 120 chrX:3399973-3400093 1.0000 120 chr3L:14558116-14558236 1.0000 120 chr3R:21624659-21624779 1.0000 120 chr2L:21234435-21234555 1.0000 120 chr3L:20398979-20399099 1.0000 120 chr3L:2157592-2157712 1.0000 120 chr2L:6773754-6773874 1.0000 120 chr2R:20256783-20256903 1.0000 120 chr3R:12700617-12700737 1.0000 120 chr3R:24026658-24026778 1.0000 120 chr3R:26907093-26907213 1.0000 120 chr2R:10528682-10528802 1.0000 120 chr3L:16780459-16780579 1.0000 120 chrX:2638973-2639093 1.0000 120 chr2R:20236185-20236305 1.0000 120 chr3L:17622291-17622411 1.0000 120 chr2R:15846893-15847013 1.0000 120 chr2R:16582066-16582186 1.0000 120 chr3L:109289-109409 1.0000 120 chr3L:12411452-12411572 1.0000 120 chr2R:20939279-20939399 1.0000 120 chr3R:24799042-24799162 1.0000 120 chr2R:24583239-24583359 1.0000 120 chr3L:19649542-19649662 1.0000 120 chr3R:14798973-14799093 1.0000 120 chr3L:16056629-16056749 1.0000 120 chr3R:14013920-14014040 1.0000 120 chr3L:17921579-17921699 1.0000 120 chr2L:1629339-1629459 1.0000 120 chr2L:18657766-18657886 1.0000 120 chr2L:4905510-4905630 1.0000 120 chr3R:4988298-4988418 1.0000 120 chr3R:7122321-7122441 1.0000 120 chr2R:13500490-13500610 1.0000 120 chrX:2049023-2049143 1.0000 120 chr3L:8101944-8102064 1.0000 120 chr2R:18691949-18692069 1.0000 120 chrX:2175507-2175627 1.0000 120 chr3R:30091846-30091966 1.0000 120 chr3R:13998735-13998855 1.0000 120 chr3L:5802371-5802491 1.0000 120 chr3L:3733204-3733324 1.0000 120 chr3R:16074279-16074399 1.0000 120 chr2L:12488873-12488993 1.0000 120 chr3L:140110-140230 1.0000 120 chr2L:8298638-8298758 1.0000 120 chr2L:18818563-18818683 1.0000 120 chr2L:126071-126191 1.0000 120 chrX:2303076-2303196 1.0000 120 chrX:11515566-11515686 1.0000 120 chrX:5427394-5427514 1.0000 120 chr2R:9272985-9273105 1.0000 120 chrX:18055958-18056078 1.0000 120 chr2R:12034384-12034504 1.0000 120 chr2L:10469083-10469203 1.0000 120 chr3L:14547273-14547393 1.0000 120 chr2L:5147549-5147669 1.0000 120 chr3L:13230454-13230574 1.0000 120 chr2R:6813814-6813934 1.0000 120 chr3R:5355372-5355492 1.0000 120 chr2R:14426259-14426379 1.0000 120 chr3L:6707332-6707452 1.0000 120 chr2L:8171689-8171809 1.0000 120 chr3L:12494598-12494718 1.0000 120 chr2R:7063088-7063208 1.0000 120 chr2L:13179331-13179451 1.0000 120 chr3R:15305272-15305392 1.0000 120 chrX:13374641-13374761 1.0000 120 chr2R:13587501-13587621 1.0000 120 chr3L:16309121-16309241 1.0000 120 chr2R:9401704-9401824 1.0000 120 chr3R:26594005-26594125 1.0000 120 chr2R:17459603-17459723 1.0000 120 chr3R:16873503-16873623 1.0000 120 chrX:10534678-10534798 1.0000 120 chr3R:21702877-21702997 1.0000 120 chr3L:5780252-5780372 1.0000 120 chr3L:16028785-16028905 1.0000 120 chr3R:26981898-26982018 1.0000 120 chrX:9580670-9580790 1.0000 120 chr2R:8648802-8648922 1.0000 120 chr3L:18015670-18015790 1.0000 120 chr2R:12748306-12748426 1.0000 120 chr3L:1394959-1395079 1.0000 120 chr3L:2583625-2583745 1.0000 120 chr2R:21605189-21605309 1.0000 120 chrX:15048852-15048972 1.0000 120 chr3L:17958319-17958439 1.0000 120 chr3R:27130637-27130757 1.0000 120 chr2L:13803399-13803519 1.0000 120 chrX:2029449-2029569 1.0000 120 chr3L:18998030-18998150 1.0000 120 chr2L:20399441-20399561 1.0000 120 chr2R:22073101-22073221 1.0000 120 chr3R:14014683-14014803 1.0000 120 chrX:2089095-2089215 1.0000 120 chr3L:11628388-11628508 1.0000 120 chr3L:9128760-9128880 1.0000 120 chr3L:3426354-3426474 1.0000 120 chr2R:21721095-21721215 1.0000 120 chr2L:12503138-12503258 1.0000 120 chr3L:16610990-16611110 1.0000 120 chr3R:10778380-10778500 1.0000 120 chr2R:18547327-18547447 1.0000 120 chr3L:3613100-3613220 1.0000 120 chr3R:4458824-4458944 1.0000 120 chr2R:15424442-15424562 1.0000 120 chr3L:17930050-17930170 1.0000 120 chrX:13210588-13210708 1.0000 120 chr3L:18869601-18869721 1.0000 120 chr2R:9831514-9831634 1.0000 120 chr3L:1202843-1202963 1.0000 120 chr2R:6867883-6868003 1.0000 120 chr3R:26332328-26332448 1.0000 120 chrX:11869344-11869464 1.0000 120 chrX:13394877-13394997 1.0000 120 chrX:15068711-15068831 1.0000 120 chr3L:17922241-17922361 1.0000 120 chrX:18063522-18063642 1.0000 120 chr2R:7953263-7953383 1.0000 120 chr3L:18034617-18034737 1.0000 120 chr3L:21417447-21417567 1.0000 120 chr3L:8628598-8628718 1.0000 120 chr3R:25304243-25304363 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ftz-f1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ftz-f1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.256 G 0.255 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.244 C 0.256 G 0.255 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAAGGYCR MEME-1 width = 8 sites = 109 llr = 849 E-value = 9.1e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8a::::6 pos.-specific C 7::::3a: probability G 32:9a1:3 matrix T :::1:6:: bits 2.0 * * 1.8 * * * 1.6 * * * 1.4 **** * Relative 1.2 **** * Entropy 1.0 ***** * (11.2 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGGTCA consensus G C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5355372-5355492 107 1.51e-05 CCCCTCCGGC CAAGGTCA TCGGCC chrX:5427394-5427514 59 1.51e-05 GTCATTTGGC CAAGGTCA CGCGTCGCGT chr2R:18691949-18692069 30 1.51e-05 ATGAAAACCC CAAGGTCA AAAACTAGAC chr3L:17921579-17921699 80 1.51e-05 GGTTTATGGC CAAGGTCA AGGACGCGCC chr2L:13014329-13014449 58 1.51e-05 TCTCGCGAGC CAAGGTCA AGTAGGAGCG chr3R:4228512-4228632 48 1.51e-05 CCTCCCGCGC CAAGGTCA GCGTTGACTC chr3R:26955698-26955818 36 1.51e-05 CTCAGAGGTC CAAGGTCA CTGAATGCCT chr2L:6565092-6565212 73 1.51e-05 CTGACCAGCT CAAGGTCA TTTCTTATCT chr2R:12597076-12597196 37 1.51e-05 TGAAAAGACG CAAGGTCA ATTACTGTCG chr3R:27609798-27609918 56 1.51e-05 GCGTTGCTGC CAAGGTCA TTACATTTAG chrX:9878252-9878372 85 1.51e-05 AGCAATGGAC CAAGGTCA GAAGGTTATC chr2L:1632069-1632189 97 1.51e-05 AGCGATTCCC CAAGGTCA CGGGTGGAAG chr2R:17402145-17402265 49 1.51e-05 GTGGGAAAGT CAAGGTCA GCCCATCCCC chr3L:9423606-9423726 108 1.51e-05 AGTTGGCGGC CAAGGTCA TCCAG chr3L:18798982-18799102 21 1.51e-05 TAGGTTAATG CAAGGTCA GGTTGAAGGT chrX:9897741-9897861 57 1.51e-05 TCCCCCGCCT CAAGGTCA TCCGCCGGTT chr3L:8628598-8628718 97 4.67e-05 AGACACTTGC CAAGGTCG CAATTTGATG chr3L:21417447-21417567 102 4.67e-05 AGTTCAAGAT CAAGGTCG TACGATTTCC chrX:13394877-13394997 57 4.67e-05 AAGGGAACAA CAAGGTCG AATATCCGGA chrX:11869344-11869464 77 4.67e-05 GAAAATGGGC CAAGGCCA GTGGGTGGTG chr2R:21721095-21721215 73 4.67e-05 CGTCACGCAA CAAGGTCG TCGCACCGCC chr3R:27130637-27130757 22 4.67e-05 ATAAATTGAG CAAGGCCA TGCGTAAATG chr2R:21605189-21605309 83 4.67e-05 CGATGCGTGG CAAGGTCG TTTCGTTTAT chr2R:9272985-9273105 104 4.67e-05 AAACCGAAAA CAAGGTCG CCAGCCATA chr2L:8298638-8298758 24 4.67e-05 TCTGCAGAGG CAAGGCCA TAAATCTATT chr2R:23982469-23982589 99 4.67e-05 CGAACTGCTG CAAGGTCG AAGTTAACGC chr3R:29116938-29117058 24 4.67e-05 TGATGGCCAT CAAGGCCA AGCGAAAGCA chr3L:21031070-21031190 38 4.67e-05 CTTGGCACCT CAAGGTCG CCGTCTTTAT chr3L:18305930-18306050 56 4.67e-05 CAACTGGCTT CAAGGTCG TGCCGGCCGG chr3R:22524998-22525118 44 4.67e-05 GTGCTTCCAC CAAGGCCA AGCCGCACTG chr3R:9527633-9527753 78 4.67e-05 AAATTGATCT CAAGGTCG AGTCGACGGA chr3R:26463160-26463280 64 4.67e-05 GCCACCCACT CAAGGTCG TTGGGGGTCA chr3R:31604734-31604854 60 4.67e-05 GCCCGCAATT CAAGGTCG CCCACCCACC chr3L:22733692-22733812 23 4.67e-05 TTTTACTGGT CAAGGCCA GGTACTAAAT chr2L:15003935-15004055 76 4.67e-05 GTGGGCTGCC CAAGGTCG AAATGTGGCA chrX:17090530-17090650 81 4.67e-05 CATCTATTTT CAAGGCCA GGGACAGGGT chr3L:13866423-13866543 94 4.67e-05 GAATTCAAGG CAAGGTCG CAGGCTCACG chr2L:19402814-19402934 46 4.67e-05 ACACATGTGT CAAGGCCA GCAAACTGAC chr3L:8682070-8682190 61 4.67e-05 ACACAGACGG CAAGGTCG TTTCGTCTGG chrX:18063522-18063642 22 6.18e-05 AGCGAGCTTT GAAGGTCA GGCGGCAGGC chr2R:18547327-18547447 45 6.18e-05 CTTGGGTGCC GAAGGTCA CGATTGATAA chr3R:30091846-30091966 43 6.18e-05 CCTTCCGATG GAAGGTCA GCTCCTCGCA chr3L:1204384-1204504 105 6.18e-05 CCGTTCTGCT GAAGGTCA TTTGCACA chr2R:24956180-24956300 63 6.18e-05 TTTTAGCCAT GAAGGTCA TGCCCAGGTG chr3L:13230454-13230574 59 7.83e-05 CCGAAAACGC CAAGGCCG AAGCCGAAAA chr3L:12203554-12203674 35 7.83e-05 CGTTGGAGTG CAAGGCCG TTTTAAATCA chr3L:18046825-18046945 11 7.83e-05 cacacacaca caAGGCCG CAGTGTTGAC chr2L:5742562-5742682 11 7.83e-05 TTTTCGTGTT CAAGGCCG CGCGCTGGCG chr2R:16572447-16572567 59 7.83e-05 TGGGCGGCGC CAAGGCCG CTGGCCGGGA chr3R:14014683-14014803 24 1.10e-04 AGCGAGACAG GAAGGCCA GAAAGAGAGA chr3L:2583625-2583745 81 1.10e-04 ACCGAGAGGA GAAGGCCA AACAGAAATA chr3L:16309121-16309241 97 1.10e-04 GTCTGCGGTA GAAGGCCA ACGGAGGCGG chr3L:12494598-12494718 106 1.10e-04 AAACGCAGAC GAAGGTCG AGAGAAA chr3L:3733204-3733324 74 1.10e-04 GCGATTGGGT GAAGGTCG TCTGAGGAAT chr2L:18657766-18657886 59 1.10e-04 TCGATATTCC GAAGGCCA TTCGAGGATT chr2L:12052875-12052995 54 1.10e-04 TGGGCACCAT GAAGGCCA GCGGTCCGAA chr3L:5808670-5808790 79 1.10e-04 CCAATCGGAG GAAGGCCA CAGTTAGGGG chr3R:31039012-31039132 101 1.10e-04 AAATGTCTGT GAAGGTCG AGCAGTCAGT chr3R:5860869-5860989 85 1.10e-04 AGGTGGAACA GAAGGTCG ATAATACGAC chr3R:30483519-30483639 66 1.26e-04 TCAGGAAGTT CGAGGTCA GGTGGTAAAC chrX:623494-623614 74 1.26e-04 CCTCCTCCAC CGAGGTCA AGTAATCTCG chr2R:8648802-8648922 51 1.42e-04 TGCCGACGCT GAAGGCCG ACATCGGCAG chr3R:15305272-15305392 45 1.42e-04 CCGAGGAGGA GAAGGCCG CCCTGgaggc chr3L:17476652-17476772 85 1.42e-04 AATTGTTTTC GAAGGCCG GGTGAACTGG chrX:15068711-15068831 79 1.90e-04 AATGTGTGTG CGAGGCCA GCCAAATTGA chr3R:26332328-26332448 82 1.90e-04 GAAAGTGGGT CAATGTCA GCTCGGCGCT chr3L:17930050-17930170 15 1.90e-04 gtggCATTGG CAATGTCA AAGGCAAGGC chr3L:11628388-11628508 86 1.90e-04 CGGTCATTGT CGAGGCCA CGGTCAAGCA chr3L:14547273-14547393 20 1.90e-04 GTAGCGGCGC CGAGGCCA TTCGCTCCAG chr3R:7122321-7122441 107 1.90e-04 AATAATCTCT CAATGTCA AGGTAA chr2L:21234435-21234555 18 1.90e-04 ACGGGTTTGG CAATGTCA ATAGGGCAGC chr3R:21624659-21624779 94 1.90e-04 CTTCGGCGGA CGAGGCCA CAAATTTTTA chr3L:649539-649659 91 1.90e-04 ACCCACTTGG CGAGGTCG CATTCGAGTT chr3R:27153995-27154115 112 1.90e-04 TTGCCAGTGG CAATGTCA A chr3L:18061380-18061500 17 1.90e-04 AGGACGAAGA CGAGGTCG CGGCCGAAGG chr3R:18733732-18733852 28 1.90e-04 TCACCTTGCC CGAGGCCA TCTCGACAAC chr2L:1634619-1634739 77 1.90e-04 GGAACTTCTG CGAGGCCA TAGTGCGTGT chr3L:16610990-16611110 49 2.05e-04 GTCCACTGGT CAAGGGCA TCGTACATGT chr3L:8101944-8102064 77 2.05e-04 GGCCCGTTCG CAAGGGCA TCTTCCGCTC chrX:19527613-19527733 113 2.05e-04 GCAAACCGCC CAAGGGCA chr2L:1218582-1218702 16 2.05e-04 TCGCCCTTTC CAAGGGCA GCGGGTTCAA chr3L:1394959-1395079 56 2.36e-04 TGGCGAGAGT CAAGGTCT TTGCGTCGTG chr2R:7063088-7063208 64 2.36e-04 AGTTAATATT GGAGGTCA CCTGGCCACT chr3L:109289-109409 48 2.36e-04 CATTCGACTG GGAGGTCA TCTGTCCGCC chr3L:2157592-2157712 57 2.36e-04 TAGTCCAGCT GGAGGTCA CGGCCCAGAG chr3R:23220081-23220201 49 2.36e-04 TGAACTTGTT CAAGGTCT CTCGCGAGCA chrX:2089095-2089215 34 2.84e-04 ACTTATATTC CAATGCCA GCCGGCGAAG chr2R:9401704-9401824 11 2.84e-04 AATTCTAGCT CAATGCCA CACTTGCAAC chr3R:22598888-22599008 68 2.84e-04 AATAAGGCGC CAATGTCG TCCCACGTTG chr2L:8171689-8171809 26 3.00e-04 TTTGTTTGCC CAAGGGCG GCGGGATGGT chr2R:7053707-7053827 68 3.00e-04 CTTGGCTGGC CAAGGGCG GTGCATAAAT chr3L:17605009-17605129 106 3.00e-04 CTTTGCCGCC CAAGGGCG TAACGAA chrX:10534678-10534798 21 3.79e-04 CTATAGAGCT CAAGGCCT TAGCAATCCA chrX:13374641-13374761 99 3.79e-04 ACCCCTTTCT CAAGGACA CCTGTTGGAA chr3R:10356078-10356198 47 3.79e-04 TGCTCCGCTT CAAGGACA CCTTGACATT chr3L:17964103-17964223 19 3.79e-04 AAATCGTCGG GGAGGTCG CCGCCTATAG chr3L:9846165-9846285 85 3.79e-04 TAATAAACGG CAAGGCCT TGATAAGCGC chr2L:15035614-15035734 90 3.79e-04 AGGCCGAGGC GGAGGCCA AGTCGAATGG chr2L:14027975-14028095 40 3.79e-04 TGGTGGCCGC GGAGGCCA AGGCGAGACC chr3R:16068348-16068468 103 3.79e-04 TTCAAAATTT GGAGGCCA AATGAATTTT chr2R:6867883-6868003 84 4.40e-04 TTTTTGGCCA CAAGGTGA GCCCCGGAGG chr2L:1629339-1629459 92 4.40e-04 ATGAACTTTT CAAGGTGA AACTAGAAAG chr3R:24799042-24799162 27 4.40e-04 GGCCTGGGCC GAAGGTCT CCGGCGGCTC chrX:16767003-16767123 39 4.40e-04 GCAGCAACAC CAAGGTGA CATCACTGTG chr3R:25304243-25304363 75 5.03e-04 GCAATGAGCT GGAGGCCG CGGTCAAGGT chr3R:26981898-26982018 24 5.03e-04 TTAGAAATTC GAATGTCG TACTGCGAAA chrX:16696799-16696919 1 5.03e-04 . GAATGTCG GCGGGCCTGC chr3R:9626389-9626509 33 5.03e-04 TGTCCGCAGC GAATGCCA AGCCCAAGCT chr3R:16147240-16147360 102 5.03e-04 ACCCATCGCT CAAGGACG AGGCGTAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5355372-5355492 1.5e-05 106_[+1]_6 chrX:5427394-5427514 1.5e-05 58_[+1]_54 chr2R:18691949-18692069 1.5e-05 29_[+1]_83 chr3L:17921579-17921699 1.5e-05 79_[+1]_33 chr2L:13014329-13014449 1.5e-05 57_[+1]_55 chr3R:4228512-4228632 1.5e-05 47_[+1]_65 chr3R:26955698-26955818 1.5e-05 35_[+1]_77 chr2L:6565092-6565212 1.5e-05 72_[+1]_40 chr2R:12597076-12597196 1.5e-05 36_[+1]_76 chr3R:27609798-27609918 1.5e-05 55_[+1]_57 chrX:9878252-9878372 1.5e-05 84_[+1]_28 chr2L:1632069-1632189 1.5e-05 96_[+1]_16 chr2R:17402145-17402265 1.5e-05 48_[+1]_64 chr3L:9423606-9423726 1.5e-05 107_[+1]_5 chr3L:18798982-18799102 1.5e-05 20_[+1]_92 chrX:9897741-9897861 1.5e-05 56_[+1]_56 chr3L:8628598-8628718 4.7e-05 96_[+1]_16 chr3L:21417447-21417567 4.7e-05 101_[+1]_11 chrX:13394877-13394997 4.7e-05 56_[+1]_56 chrX:11869344-11869464 4.7e-05 76_[+1]_36 chr2R:21721095-21721215 4.7e-05 72_[+1]_40 chr3R:27130637-27130757 4.7e-05 21_[+1]_91 chr2R:21605189-21605309 4.7e-05 82_[+1]_30 chr2R:9272985-9273105 4.7e-05 103_[+1]_9 chr2L:8298638-8298758 4.7e-05 23_[+1]_89 chr2R:23982469-23982589 4.7e-05 98_[+1]_14 chr3R:29116938-29117058 4.7e-05 23_[+1]_89 chr3L:21031070-21031190 4.7e-05 37_[+1]_75 chr3L:18305930-18306050 4.7e-05 55_[+1]_57 chr3R:22524998-22525118 4.7e-05 43_[+1]_69 chr3R:9527633-9527753 4.7e-05 77_[+1]_35 chr3R:26463160-26463280 4.7e-05 63_[+1]_49 chr3R:31604734-31604854 4.7e-05 59_[+1]_53 chr3L:22733692-22733812 4.7e-05 22_[+1]_90 chr2L:15003935-15004055 4.7e-05 75_[+1]_37 chrX:17090530-17090650 4.7e-05 80_[+1]_32 chr3L:13866423-13866543 4.7e-05 93_[+1]_19 chr2L:19402814-19402934 4.7e-05 45_[+1]_67 chr3L:8682070-8682190 4.7e-05 60_[+1]_52 chrX:18063522-18063642 6.2e-05 21_[+1]_91 chr2R:18547327-18547447 6.2e-05 44_[+1]_68 chr3R:30091846-30091966 6.2e-05 42_[+1]_70 chr3L:1204384-1204504 6.2e-05 104_[+1]_8 chr2R:24956180-24956300 6.2e-05 62_[+1]_50 chr3L:13230454-13230574 7.8e-05 58_[+1]_54 chr3L:12203554-12203674 7.8e-05 34_[+1]_78 chr3L:18046825-18046945 7.8e-05 10_[+1]_102 chr2L:5742562-5742682 7.8e-05 10_[+1]_102 chr2R:16572447-16572567 7.8e-05 58_[+1]_54 chr3R:14014683-14014803 0.00011 23_[+1]_89 chr3L:2583625-2583745 0.00011 80_[+1]_32 chr3L:16309121-16309241 0.00011 96_[+1]_16 chr3L:12494598-12494718 0.00011 105_[+1]_7 chr3L:3733204-3733324 0.00011 73_[+1]_39 chr2L:18657766-18657886 0.00011 58_[+1]_54 chr2L:12052875-12052995 0.00011 53_[+1]_59 chr3L:5808670-5808790 0.00011 78_[+1]_34 chr3R:31039012-31039132 0.00011 100_[+1]_12 chr3R:5860869-5860989 0.00011 84_[+1]_28 chr3R:30483519-30483639 0.00013 65_[+1]_47 chrX:623494-623614 0.00013 73_[+1]_39 chr2R:8648802-8648922 0.00014 50_[+1]_62 chr3R:15305272-15305392 0.00014 44_[+1]_68 chr3L:17476652-17476772 0.00014 84_[+1]_28 chrX:15068711-15068831 0.00019 78_[+1]_34 chr3R:26332328-26332448 0.00019 81_[+1]_31 chr3L:17930050-17930170 0.00019 14_[+1]_98 chr3L:11628388-11628508 0.00019 85_[+1]_27 chr3L:14547273-14547393 0.00019 19_[+1]_93 chr3R:7122321-7122441 0.00019 106_[+1]_6 chr2L:21234435-21234555 0.00019 17_[+1]_95 chr3R:21624659-21624779 0.00019 93_[+1]_19 chr3L:649539-649659 0.00019 90_[+1]_22 chr3R:27153995-27154115 0.00019 111_[+1]_1 chr3L:18061380-18061500 0.00019 16_[+1]_96 chr3R:18733732-18733852 0.00019 27_[+1]_85 chr2L:1634619-1634739 0.00019 76_[+1]_36 chr3L:16610990-16611110 0.00021 48_[+1]_64 chr3L:8101944-8102064 0.00021 76_[+1]_36 chrX:19527613-19527733 0.00021 112_[+1] chr2L:1218582-1218702 0.00021 15_[+1]_97 chr3L:1394959-1395079 0.00024 55_[+1]_57 chr2R:7063088-7063208 0.00024 63_[+1]_49 chr3L:109289-109409 0.00024 47_[+1]_65 chr3L:2157592-2157712 0.00024 56_[+1]_56 chr3R:23220081-23220201 0.00024 48_[+1]_64 chrX:2089095-2089215 0.00028 33_[+1]_79 chr2R:9401704-9401824 0.00028 10_[+1]_102 chr3R:22598888-22599008 0.00028 67_[+1]_45 chr2L:8171689-8171809 0.0003 25_[+1]_87 chr2R:7053707-7053827 0.0003 67_[+1]_45 chr3L:17605009-17605129 0.0003 105_[+1]_7 chrX:10534678-10534798 0.00038 20_[+1]_92 chrX:13374641-13374761 0.00038 98_[+1]_14 chr3R:10356078-10356198 0.00038 46_[+1]_66 chr3L:17964103-17964223 0.00038 18_[+1]_94 chr3L:9846165-9846285 0.00038 84_[+1]_28 chr2L:15035614-15035734 0.00038 89_[+1]_23 chr2L:14027975-14028095 0.00038 39_[+1]_73 chr3R:16068348-16068468 0.00038 102_[+1]_10 chr2R:6867883-6868003 0.00044 83_[+1]_29 chr2L:1629339-1629459 0.00044 91_[+1]_21 chr3R:24799042-24799162 0.00044 26_[+1]_86 chrX:16767003-16767123 0.00044 38_[+1]_74 chr3R:25304243-25304363 0.0005 74_[+1]_38 chr3R:26981898-26982018 0.0005 23_[+1]_89 chrX:16696799-16696919 0.0005 [+1]_112 chr3R:9626389-9626509 0.0005 32_[+1]_80 chr3R:16147240-16147360 0.0005 101_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGGYCR width=8 seqs=109 chr3R:5355372-5355492 ( 107) CAAGGTCA 1 chrX:5427394-5427514 ( 59) CAAGGTCA 1 chr2R:18691949-18692069 ( 30) CAAGGTCA 1 chr3L:17921579-17921699 ( 80) CAAGGTCA 1 chr2L:13014329-13014449 ( 58) CAAGGTCA 1 chr3R:4228512-4228632 ( 48) CAAGGTCA 1 chr3R:26955698-26955818 ( 36) CAAGGTCA 1 chr2L:6565092-6565212 ( 73) CAAGGTCA 1 chr2R:12597076-12597196 ( 37) CAAGGTCA 1 chr3R:27609798-27609918 ( 56) CAAGGTCA 1 chrX:9878252-9878372 ( 85) CAAGGTCA 1 chr2L:1632069-1632189 ( 97) CAAGGTCA 1 chr2R:17402145-17402265 ( 49) CAAGGTCA 1 chr3L:9423606-9423726 ( 108) CAAGGTCA 1 chr3L:18798982-18799102 ( 21) CAAGGTCA 1 chrX:9897741-9897861 ( 57) CAAGGTCA 1 chr3L:8628598-8628718 ( 97) CAAGGTCG 1 chr3L:21417447-21417567 ( 102) CAAGGTCG 1 chrX:13394877-13394997 ( 57) CAAGGTCG 1 chrX:11869344-11869464 ( 77) CAAGGCCA 1 chr2R:21721095-21721215 ( 73) CAAGGTCG 1 chr3R:27130637-27130757 ( 22) CAAGGCCA 1 chr2R:21605189-21605309 ( 83) CAAGGTCG 1 chr2R:9272985-9273105 ( 104) CAAGGTCG 1 chr2L:8298638-8298758 ( 24) CAAGGCCA 1 chr2R:23982469-23982589 ( 99) CAAGGTCG 1 chr3R:29116938-29117058 ( 24) CAAGGCCA 1 chr3L:21031070-21031190 ( 38) CAAGGTCG 1 chr3L:18305930-18306050 ( 56) CAAGGTCG 1 chr3R:22524998-22525118 ( 44) CAAGGCCA 1 chr3R:9527633-9527753 ( 78) CAAGGTCG 1 chr3R:26463160-26463280 ( 64) CAAGGTCG 1 chr3R:31604734-31604854 ( 60) CAAGGTCG 1 chr3L:22733692-22733812 ( 23) CAAGGCCA 1 chr2L:15003935-15004055 ( 76) CAAGGTCG 1 chrX:17090530-17090650 ( 81) CAAGGCCA 1 chr3L:13866423-13866543 ( 94) CAAGGTCG 1 chr2L:19402814-19402934 ( 46) CAAGGCCA 1 chr3L:8682070-8682190 ( 61) CAAGGTCG 1 chrX:18063522-18063642 ( 22) GAAGGTCA 1 chr2R:18547327-18547447 ( 45) GAAGGTCA 1 chr3R:30091846-30091966 ( 43) GAAGGTCA 1 chr3L:1204384-1204504 ( 105) GAAGGTCA 1 chr2R:24956180-24956300 ( 63) GAAGGTCA 1 chr3L:13230454-13230574 ( 59) CAAGGCCG 1 chr3L:12203554-12203674 ( 35) CAAGGCCG 1 chr3L:18046825-18046945 ( 11) CAAGGCCG 1 chr2L:5742562-5742682 ( 11) CAAGGCCG 1 chr2R:16572447-16572567 ( 59) CAAGGCCG 1 chr3R:14014683-14014803 ( 24) GAAGGCCA 1 chr3L:2583625-2583745 ( 81) GAAGGCCA 1 chr3L:16309121-16309241 ( 97) GAAGGCCA 1 chr3L:12494598-12494718 ( 106) GAAGGTCG 1 chr3L:3733204-3733324 ( 74) GAAGGTCG 1 chr2L:18657766-18657886 ( 59) GAAGGCCA 1 chr2L:12052875-12052995 ( 54) GAAGGCCA 1 chr3L:5808670-5808790 ( 79) GAAGGCCA 1 chr3R:31039012-31039132 ( 101) GAAGGTCG 1 chr3R:5860869-5860989 ( 85) GAAGGTCG 1 chr3R:30483519-30483639 ( 66) CGAGGTCA 1 chrX:623494-623614 ( 74) CGAGGTCA 1 chr2R:8648802-8648922 ( 51) GAAGGCCG 1 chr3R:15305272-15305392 ( 45) GAAGGCCG 1 chr3L:17476652-17476772 ( 85) GAAGGCCG 1 chrX:15068711-15068831 ( 79) CGAGGCCA 1 chr3R:26332328-26332448 ( 82) CAATGTCA 1 chr3L:17930050-17930170 ( 15) CAATGTCA 1 chr3L:11628388-11628508 ( 86) CGAGGCCA 1 chr3L:14547273-14547393 ( 20) CGAGGCCA 1 chr3R:7122321-7122441 ( 107) CAATGTCA 1 chr2L:21234435-21234555 ( 18) CAATGTCA 1 chr3R:21624659-21624779 ( 94) CGAGGCCA 1 chr3L:649539-649659 ( 91) CGAGGTCG 1 chr3R:27153995-27154115 ( 112) CAATGTCA 1 chr3L:18061380-18061500 ( 17) CGAGGTCG 1 chr3R:18733732-18733852 ( 28) CGAGGCCA 1 chr2L:1634619-1634739 ( 77) CGAGGCCA 1 chr3L:16610990-16611110 ( 49) CAAGGGCA 1 chr3L:8101944-8102064 ( 77) CAAGGGCA 1 chrX:19527613-19527733 ( 113) CAAGGGCA 1 chr2L:1218582-1218702 ( 16) CAAGGGCA 1 chr3L:1394959-1395079 ( 56) CAAGGTCT 1 chr2R:7063088-7063208 ( 64) GGAGGTCA 1 chr3L:109289-109409 ( 48) GGAGGTCA 1 chr3L:2157592-2157712 ( 57) GGAGGTCA 1 chr3R:23220081-23220201 ( 49) CAAGGTCT 1 chrX:2089095-2089215 ( 34) CAATGCCA 1 chr2R:9401704-9401824 ( 11) CAATGCCA 1 chr3R:22598888-22599008 ( 68) CAATGTCG 1 chr2L:8171689-8171809 ( 26) CAAGGGCG 1 chr2R:7053707-7053827 ( 68) CAAGGGCG 1 chr3L:17605009-17605129 ( 106) CAAGGGCG 1 chrX:10534678-10534798 ( 21) CAAGGCCT 1 chrX:13374641-13374761 ( 99) CAAGGACA 1 chr3R:10356078-10356198 ( 47) CAAGGACA 1 chr3L:17964103-17964223 ( 19) GGAGGTCG 1 chr3L:9846165-9846285 ( 85) CAAGGCCT 1 chr2L:15035614-15035734 ( 90) GGAGGCCA 1 chr2L:14027975-14028095 ( 40) GGAGGCCA 1 chr3R:16068348-16068468 ( 103) GGAGGCCA 1 chr2R:6867883-6868003 ( 84) CAAGGTGA 1 chr2L:1629339-1629459 ( 92) CAAGGTGA 1 chr3R:24799042-24799162 ( 27) GAAGGTCT 1 chrX:16767003-16767123 ( 39) CAAGGTGA 1 chr3R:25304243-25304363 ( 75) GGAGGCCG 1 chr3R:26981898-26982018 ( 24) GAATGTCG 1 chrX:16696799-16696919 ( 1) GAATGTCG 1 chr3R:9626389-9626509 ( 33) GAATGCCA 1 chr3R:16147240-16147360 ( 102) CAAGGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.6715 E= 9.1e-051 -1341 150 11 -1341 177 -1341 -63 -1341 203 -1341 -1341 -1341 -1341 -1341 182 -128 -1341 -1341 197 -1341 -315 41 -199 122 -1341 192 -321 -1341 131 -1341 45 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 109 E= 9.1e-051 0.000000 0.724771 0.275229 0.000000 0.834862 0.000000 0.165138 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.899083 0.100917 0.000000 0.000000 1.000000 0.000000 0.027523 0.339450 0.064220 0.568807 0.000000 0.972477 0.027523 0.000000 0.605505 0.000000 0.348624 0.045872 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGYCR MEME-1 regular expression -------------------------------------------------------------------------------- [CG]AAGG[TC]C[AG] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GACCTTGA MEME-2 width = 8 sites = 88 llr = 684 E-value = 8.3e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 27:1:::7 pos.-specific C 1:a8::1: probability G 83::::93 matrix T :::1aa:: bits 2.0 * * 1.8 * ** 1.6 * ** 1.4 * *** Relative 1.2 ***** Entropy 1.0 ******* (11.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACCTTGA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18869601-18869721 61 1.51e-05 AAAGTTGCGA GACCTTGA AAAGTCCCAA chr3L:17958319-17958439 102 1.51e-05 CGCTACGCTT GACCTTGA GCTTTAGAAC chrX:9580670-9580790 51 1.51e-05 ATACGTCGGT GACCTTGA CGAAGTTTAT chr2L:4905510-4905630 62 1.51e-05 GCTATCCGAC GACCTTGA CACAAAGACC chr2R:24583239-24583359 62 1.51e-05 AACTCGCAGT GACCTTGA AGCGGGCACA chr2R:10528682-10528802 51 1.51e-05 TAATTTAGCC GACCTTGA ACTTGAACGA chr3R:26907093-26907213 65 1.51e-05 GATTTGGAAC GACCTTGA GCCTTTTGTG chr3R:16218421-16218541 53 1.51e-05 GACAAGCGGC GACCTTGA ACAATTTACT chr3L:17916156-17916276 48 1.51e-05 GAGACGCGGC GACCTTGA GCAGCCTCCT chrX:2625097-2625217 88 1.51e-05 TTTTCGCACT GACCTTGA GCGGCGGCCA chr2L:5742562-5742682 47 1.51e-05 TACAATAGGC GACCTTGA AGCTGCGACT chr3L:13866423-13866543 66 1.51e-05 GATGCCGCCT GACCTTGA CAGCCAGAGC chr3R:5860869-5860989 8 1.51e-05 TTGCAGC GACCTTGA AAATGCTTGT chr2L:19402814-19402934 67 1.51e-05 AACTGACACT GACCTTGA CACGAggtct chr3L:3613100-3613220 58 3.09e-05 GCATCTTGGT GACCTTGG ACGAGGACCA chrX:2029449-2029569 101 3.09e-05 GTACCGCTGC GACCTTGG CAGTGAGAGC chr3R:27153995-27154115 24 3.09e-05 AGCTGATGTC GACCTTGG GCATGGCGTT chr3L:11112525-11112645 102 3.09e-05 CGGTGATGTT GACCTTGG TGGGGCAGTC chr3R:4650268-4650388 73 3.09e-05 CCACTCTGTT GACCTTGG GCAGATGGCA chr3L:17928283-17928403 104 3.09e-05 GACGAGCTGT GACCTTGG CGCACACCT chr2R:9831514-9831634 85 4.67e-05 TCGACCAATT GGCCTTGA AATAGCTGTT chr3L:16780459-16780579 29 4.67e-05 CGCCCCCCGT GGCCTTGA ACTCGACAGA chr3R:4228512-4228632 23 4.67e-05 AGTGCCCGCT GGCCTTGA CGCACCGCCT chr2L:2731788-2731908 49 4.67e-05 CAGCCCAGTT GGCCTTGA GTTCGGATTC chrX:1287578-1287698 68 4.67e-05 AGCAACCTGT GGCCTTGA CAGCGCCCGT chr3L:17615428-17615548 61 4.67e-05 TGGGGCCGGG GGCCTTGA ACCTCAATGT chr3L:17930050-17930170 54 6.11e-05 AACAGCCTTT AACCTTGA ACTTCACCGT chr3L:5780252-5780372 69 6.11e-05 TCTTGACCTT AACCTTGA GTTCCACATC chr2R:14426259-14426379 48 6.11e-05 AAGCTGCCTC AACCTTGA CCGTCATTCG chrX:2303076-2303196 34 6.11e-05 AAATAAACAC AACCTTGA ATAATGCCAA chrX:2638973-2639093 30 6.11e-05 TGACGCTTTT AACCTTGA TGGATTCGCT chr2L:5975175-5975295 21 6.11e-05 TTATGGCAAT AACCTTGA GCTTGTGGAT chr3R:6383520-6383640 49 6.11e-05 CAAAAAGGAA AACCTTGA AACCACACTC chr2L:1638299-1638419 36 6.11e-05 CCCTGAACAT AACCTTGA GTTGGGCTGA chr3L:5632569-5632689 48 6.11e-05 AAGGCAGAAA AACCTTGA CTTTGACTTT chr3R:9437850-9437970 19 6.11e-05 GGCAAAACGT AACCTTGA AAAGCGATTT chr2L:13459136-13459256 91 6.11e-05 TCAATACTAG AACCTTGA GTTTTCGAAA chrX:9897741-9897861 4 6.11e-05 CGC AACCTTGA CTTTCATACC chr2L:483535-483655 45 9.28e-05 GGGCATAGAC GACCTTCA GTCGGGATTG chr2R:7053707-7053827 33 9.28e-05 ATTCCATGCC GGCCTTGG CCACATATTT chr3L:9850267-9850387 58 9.28e-05 AAGCCAAATT GGCCTTGG CCAAAAGTGG chr2L:9244414-9244534 79 9.28e-05 CGGCATCATT GGCCTTGG CGGCGGGGGC chr3L:21031070-21031190 25 9.28e-05 GCCACGTTTC GGCCTTGG CACCTCAAGG chr3R:14434341-14434461 30 9.28e-05 CAGCGGGCTT GACCTTCA GCGCTGGCCC chr3R:29993031-29993151 8 9.28e-05 ACTGGAT GACCTTCA GCATTAGCAT chr3L:9889300-9889420 49 9.28e-05 TCAATTTGGC GGCCTTGG GCTACAGCAA chr2R:13587501-13587621 81 1.07e-04 TGGCTGGGGC GACATTGA CATTGAAATT chr3L:5802371-5802491 57 1.07e-04 ATTATGCGGT GACATTGA TTCTTGGGGC chr2L:18657766-18657886 25 1.07e-04 ATACAAACTT GACATTGA ACTTGCCGCT chr2R:20256783-20256903 1 1.07e-04 . GACATTGA TAACAGGGGG chr3R:10356078-10356198 59 1.07e-04 AGGACACCTT GACATTGA ACTCCCTCTC chr3L:18046825-18046945 74 1.07e-04 TTTTGGCATT GACATTGA AAACTGAAGT chr2L:1634619-1634739 61 1.22e-04 GTAACCCCCC AACCTTGG AACTTCTGCG chr3L:18057172-18057292 88 1.22e-04 TATATCTCGC AACCTTGG CAATGCTGAA chrX:15048852-15048972 35 1.83e-04 AGATAAGAAA CACCTTGA AAGATAAGGC chr2L:12488873-12488993 101 1.83e-04 GCGCCTCTTT CACCTTGA AATCAACATT chr2R:13500490-13500610 90 1.83e-04 GCACACACTT GACCTTCG GGCGGCGATA chr3L:16056629-16056749 21 1.83e-04 GCCGCTGGCT GACTTTGA TTTTTCATGT chr3R:14798973-14799093 108 1.83e-04 CATGGCCATG GACTTTGA CGAGA chr3R:12700617-12700737 29 1.83e-04 TGTGACCTCC GACCTTCG TGCGTGGCCC chrX:1262639-1262759 13 1.83e-04 TCGACTGGGC GACCTTCG GCGACTTCTC chr2R:16331957-16332077 31 1.83e-04 TTTCAGGGGC GACCTTCG ACCAACGCAA chr3L:17924485-17924605 40 1.83e-04 CCTTCGACGA CACCTTGA CTTCAATTTT chr3L:2499250-2499370 23 1.83e-04 GGGGAATGAT CACCTTGA ACTGTTCTGG chr3R:14014683-14014803 52 2.14e-04 GAAAGAGAAA GACATTGG CTAGCAACAG chr2L:8298638-8298758 92 2.29e-04 CGCCCCTCGA GGCATTGA CCGTGGAACA chr3L:8101944-8102064 10 2.29e-04 GCCGACTTT GGCATTGA AATACCTGCC chr3L:18998030-18998150 21 2.45e-04 TCATCAATTT GCCCTTGA GGGGGCGTTG chr3R:6419259-6419379 37 2.45e-04 AGCATTGTCT GCCCTTGA TTTTATCGAT chr3R:20168137-20168257 77 2.75e-04 TTTTGATTGC AGCCTTGG CAGCTGTTTT chr3R:26594005-26594125 45 3.50e-04 CGTTGCTGTT GACCCTGA AAAATATTGG chr3L:14547273-14547393 100 3.50e-04 TGCTGACTGG GACCCTGA CCCTGGACCG chrX:11515566-11515686 40 3.50e-04 TTTTATGGAC TACCTTGA ACGACCTTGC chr2L:18818563-18818683 112 3.50e-04 TTACAATTCT TACCTTGA A chr3L:649539-649659 66 3.50e-04 CGTGCTGATC GACCCTGA ATGAAAGACC chr2L:20399441-20399561 77 3.97e-04 ATGTGGTGAC GGCCTTCG AGGGAAGCGG chr2R:12748306-12748426 19 3.97e-04 TTAACAAGTT GGCTTTGA TCGAGATTGG chr3R:21702877-21702997 52 3.97e-04 CGGCCGAAAG CGCCTTGA CAAACAATTA chr3R:16873503-16873623 71 3.97e-04 TTTGGGTCTT GGCCTTCG TTGAGCACAA chr2R:17459603-17459723 11 3.97e-04 GCATTCCAAG GGCTTTGA AACACTGGCG chr3R:7122321-7122441 27 3.97e-04 TTTACAACTT GGCCTTCG AAGCGAGAGC chr3R:23220081-23220201 28 3.97e-04 CAGACGAAAT GGCTTTGA ACTTGAACTT chr2L:15035614-15035734 57 3.97e-04 GGAAGCAACT GGCCTTCG ATTGGCCCAC chr2R:22925638-22925758 102 3.97e-04 TTTCAAGCTC GGCCTTCG AAAGCGAGAA chr3L:20398979-20399099 63 4.27e-04 CAGAGTCAGG GACATTCA CCGCACTGTG chr3R:13972766-13972886 7 4.27e-04 TGATTT GGCATTGG GGCCTCAAGc chr3L:19649542-19649662 42 4.44e-04 ACACGCCCTC GCCCTTGG TCAGGGCCAC chr2R:6813814-6813934 6 4.88e-04 GCCGT GACCTTGT ACCGGTTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18869601-18869721 1.5e-05 60_[+2]_52 chr3L:17958319-17958439 1.5e-05 101_[+2]_11 chrX:9580670-9580790 1.5e-05 50_[+2]_62 chr2L:4905510-4905630 1.5e-05 61_[+2]_51 chr2R:24583239-24583359 1.5e-05 61_[+2]_51 chr2R:10528682-10528802 1.5e-05 50_[+2]_62 chr3R:26907093-26907213 1.5e-05 64_[+2]_48 chr3R:16218421-16218541 1.5e-05 52_[+2]_60 chr3L:17916156-17916276 1.5e-05 47_[+2]_65 chrX:2625097-2625217 1.5e-05 87_[+2]_25 chr2L:5742562-5742682 1.5e-05 46_[+2]_66 chr3L:13866423-13866543 1.5e-05 65_[+2]_47 chr3R:5860869-5860989 1.5e-05 7_[+2]_105 chr2L:19402814-19402934 1.5e-05 66_[+2]_46 chr3L:3613100-3613220 3.1e-05 57_[+2]_55 chrX:2029449-2029569 3.1e-05 100_[+2]_12 chr3R:27153995-27154115 3.1e-05 23_[+2]_89 chr3L:11112525-11112645 3.1e-05 101_[+2]_11 chr3R:4650268-4650388 3.1e-05 72_[+2]_40 chr3L:17928283-17928403 3.1e-05 103_[+2]_9 chr2R:9831514-9831634 4.7e-05 84_[+2]_28 chr3L:16780459-16780579 4.7e-05 28_[+2]_84 chr3R:4228512-4228632 4.7e-05 22_[+2]_90 chr2L:2731788-2731908 4.7e-05 48_[+2]_64 chrX:1287578-1287698 4.7e-05 67_[+2]_45 chr3L:17615428-17615548 4.7e-05 60_[+2]_52 chr3L:17930050-17930170 6.1e-05 53_[+2]_59 chr3L:5780252-5780372 6.1e-05 68_[+2]_44 chr2R:14426259-14426379 6.1e-05 47_[+2]_65 chrX:2303076-2303196 6.1e-05 33_[+2]_79 chrX:2638973-2639093 6.1e-05 29_[+2]_83 chr2L:5975175-5975295 6.1e-05 20_[+2]_92 chr3R:6383520-6383640 6.1e-05 48_[+2]_64 chr2L:1638299-1638419 6.1e-05 35_[+2]_77 chr3L:5632569-5632689 6.1e-05 47_[+2]_65 chr3R:9437850-9437970 6.1e-05 18_[+2]_94 chr2L:13459136-13459256 6.1e-05 90_[+2]_22 chrX:9897741-9897861 6.1e-05 3_[+2]_109 chr2L:483535-483655 9.3e-05 44_[+2]_68 chr2R:7053707-7053827 9.3e-05 32_[+2]_80 chr3L:9850267-9850387 9.3e-05 57_[+2]_55 chr2L:9244414-9244534 9.3e-05 78_[+2]_34 chr3L:21031070-21031190 9.3e-05 24_[+2]_88 chr3R:14434341-14434461 9.3e-05 29_[+2]_83 chr3R:29993031-29993151 9.3e-05 7_[+2]_105 chr3L:9889300-9889420 9.3e-05 48_[+2]_64 chr2R:13587501-13587621 0.00011 80_[+2]_32 chr3L:5802371-5802491 0.00011 56_[+2]_56 chr2L:18657766-18657886 0.00011 24_[+2]_88 chr2R:20256783-20256903 0.00011 [+2]_112 chr3R:10356078-10356198 0.00011 58_[+2]_54 chr3L:18046825-18046945 0.00011 73_[+2]_39 chr2L:1634619-1634739 0.00012 60_[+2]_52 chr3L:18057172-18057292 0.00012 87_[+2]_25 chrX:15048852-15048972 0.00018 34_[+2]_78 chr2L:12488873-12488993 0.00018 100_[+2]_12 chr2R:13500490-13500610 0.00018 89_[+2]_23 chr3L:16056629-16056749 0.00018 20_[+2]_92 chr3R:14798973-14799093 0.00018 107_[+2]_5 chr3R:12700617-12700737 0.00018 28_[+2]_84 chrX:1262639-1262759 0.00018 12_[+2]_100 chr2R:16331957-16332077 0.00018 30_[+2]_82 chr3L:17924485-17924605 0.00018 39_[+2]_73 chr3L:2499250-2499370 0.00018 22_[+2]_90 chr3R:14014683-14014803 0.00021 51_[+2]_61 chr2L:8298638-8298758 0.00023 91_[+2]_21 chr3L:8101944-8102064 0.00023 9_[+2]_103 chr3L:18998030-18998150 0.00024 20_[+2]_92 chr3R:6419259-6419379 0.00024 36_[+2]_76 chr3R:20168137-20168257 0.00027 76_[+2]_36 chr3R:26594005-26594125 0.00035 44_[+2]_68 chr3L:14547273-14547393 0.00035 99_[+2]_13 chrX:11515566-11515686 0.00035 39_[+2]_73 chr2L:18818563-18818683 0.00035 111_[+2]_1 chr3L:649539-649659 0.00035 65_[+2]_47 chr2L:20399441-20399561 0.0004 76_[+2]_36 chr2R:12748306-12748426 0.0004 18_[+2]_94 chr3R:21702877-21702997 0.0004 51_[+2]_61 chr3R:16873503-16873623 0.0004 70_[+2]_42 chr2R:17459603-17459723 0.0004 10_[+2]_102 chr3R:7122321-7122441 0.0004 26_[+2]_86 chr3R:23220081-23220201 0.0004 27_[+2]_85 chr2L:15035614-15035734 0.0004 56_[+2]_56 chr2R:22925638-22925758 0.0004 101_[+2]_11 chr3L:20398979-20399099 0.00043 62_[+2]_50 chr3R:13972766-13972886 0.00043 6_[+2]_106 chr3L:19649542-19649662 0.00044 41_[+2]_71 chr2R:6813814-6813934 0.00049 5_[+2]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACCTTGA width=8 seqs=88 chr3L:18869601-18869721 ( 61) GACCTTGA 1 chr3L:17958319-17958439 ( 102) GACCTTGA 1 chrX:9580670-9580790 ( 51) GACCTTGA 1 chr2L:4905510-4905630 ( 62) GACCTTGA 1 chr2R:24583239-24583359 ( 62) GACCTTGA 1 chr2R:10528682-10528802 ( 51) GACCTTGA 1 chr3R:26907093-26907213 ( 65) GACCTTGA 1 chr3R:16218421-16218541 ( 53) GACCTTGA 1 chr3L:17916156-17916276 ( 48) GACCTTGA 1 chrX:2625097-2625217 ( 88) GACCTTGA 1 chr2L:5742562-5742682 ( 47) GACCTTGA 1 chr3L:13866423-13866543 ( 66) GACCTTGA 1 chr3R:5860869-5860989 ( 8) GACCTTGA 1 chr2L:19402814-19402934 ( 67) GACCTTGA 1 chr3L:3613100-3613220 ( 58) GACCTTGG 1 chrX:2029449-2029569 ( 101) GACCTTGG 1 chr3R:27153995-27154115 ( 24) GACCTTGG 1 chr3L:11112525-11112645 ( 102) GACCTTGG 1 chr3R:4650268-4650388 ( 73) GACCTTGG 1 chr3L:17928283-17928403 ( 104) GACCTTGG 1 chr2R:9831514-9831634 ( 85) GGCCTTGA 1 chr3L:16780459-16780579 ( 29) GGCCTTGA 1 chr3R:4228512-4228632 ( 23) GGCCTTGA 1 chr2L:2731788-2731908 ( 49) GGCCTTGA 1 chrX:1287578-1287698 ( 68) GGCCTTGA 1 chr3L:17615428-17615548 ( 61) GGCCTTGA 1 chr3L:17930050-17930170 ( 54) AACCTTGA 1 chr3L:5780252-5780372 ( 69) AACCTTGA 1 chr2R:14426259-14426379 ( 48) AACCTTGA 1 chrX:2303076-2303196 ( 34) AACCTTGA 1 chrX:2638973-2639093 ( 30) AACCTTGA 1 chr2L:5975175-5975295 ( 21) AACCTTGA 1 chr3R:6383520-6383640 ( 49) AACCTTGA 1 chr2L:1638299-1638419 ( 36) AACCTTGA 1 chr3L:5632569-5632689 ( 48) AACCTTGA 1 chr3R:9437850-9437970 ( 19) AACCTTGA 1 chr2L:13459136-13459256 ( 91) AACCTTGA 1 chrX:9897741-9897861 ( 4) AACCTTGA 1 chr2L:483535-483655 ( 45) GACCTTCA 1 chr2R:7053707-7053827 ( 33) GGCCTTGG 1 chr3L:9850267-9850387 ( 58) GGCCTTGG 1 chr2L:9244414-9244534 ( 79) GGCCTTGG 1 chr3L:21031070-21031190 ( 25) GGCCTTGG 1 chr3R:14434341-14434461 ( 30) GACCTTCA 1 chr3R:29993031-29993151 ( 8) GACCTTCA 1 chr3L:9889300-9889420 ( 49) GGCCTTGG 1 chr2R:13587501-13587621 ( 81) GACATTGA 1 chr3L:5802371-5802491 ( 57) GACATTGA 1 chr2L:18657766-18657886 ( 25) GACATTGA 1 chr2R:20256783-20256903 ( 1) GACATTGA 1 chr3R:10356078-10356198 ( 59) GACATTGA 1 chr3L:18046825-18046945 ( 74) GACATTGA 1 chr2L:1634619-1634739 ( 61) AACCTTGG 1 chr3L:18057172-18057292 ( 88) AACCTTGG 1 chrX:15048852-15048972 ( 35) CACCTTGA 1 chr2L:12488873-12488993 ( 101) CACCTTGA 1 chr2R:13500490-13500610 ( 90) GACCTTCG 1 chr3L:16056629-16056749 ( 21) GACTTTGA 1 chr3R:14798973-14799093 ( 108) GACTTTGA 1 chr3R:12700617-12700737 ( 29) GACCTTCG 1 chrX:1262639-1262759 ( 13) GACCTTCG 1 chr2R:16331957-16332077 ( 31) GACCTTCG 1 chr3L:17924485-17924605 ( 40) CACCTTGA 1 chr3L:2499250-2499370 ( 23) CACCTTGA 1 chr3R:14014683-14014803 ( 52) GACATTGG 1 chr2L:8298638-8298758 ( 92) GGCATTGA 1 chr3L:8101944-8102064 ( 10) GGCATTGA 1 chr3L:18998030-18998150 ( 21) GCCCTTGA 1 chr3R:6419259-6419379 ( 37) GCCCTTGA 1 chr3R:20168137-20168257 ( 77) AGCCTTGG 1 chr3R:26594005-26594125 ( 45) GACCCTGA 1 chr3L:14547273-14547393 ( 100) GACCCTGA 1 chrX:11515566-11515686 ( 40) TACCTTGA 1 chr2L:18818563-18818683 ( 112) TACCTTGA 1 chr3L:649539-649659 ( 66) GACCCTGA 1 chr2L:20399441-20399561 ( 77) GGCCTTCG 1 chr2R:12748306-12748426 ( 19) GGCTTTGA 1 chr3R:21702877-21702997 ( 52) CGCCTTGA 1 chr3R:16873503-16873623 ( 71) GGCCTTCG 1 chr2R:17459603-17459723 ( 11) GGCTTTGA 1 chr3R:7122321-7122441 ( 27) GGCCTTCG 1 chr3R:23220081-23220201 ( 28) GGCTTTGA 1 chr2L:15035614-15035734 ( 57) GGCCTTCG 1 chr2R:22925638-22925758 ( 102) GGCCTTCG 1 chr3L:20398979-20399099 ( 63) GACATTCA 1 chr3R:13972766-13972886 ( 7) GGCATTGG 1 chr3L:19649542-19649662 ( 42) GCCCTTGG 1 chr2R:6813814-6813934 ( 6) GACCTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3508 E= 8.3e-027 -52 -217 156 -342 150 -291 10 -1310 -1310 196 -1310 -1310 -97 167 -1310 -210 -1310 -291 -1310 198 -1310 -1310 -1310 203 -1310 -79 174 -1310 150 -1310 21 -442 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 8.3e-027 0.170455 0.056818 0.750000 0.022727 0.693182 0.034091 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.818182 0.000000 0.056818 0.000000 0.034091 0.000000 0.965909 0.000000 0.000000 0.000000 1.000000 0.000000 0.147727 0.852273 0.000000 0.693182 0.000000 0.295455 0.011364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACCTTGA MEME-2 regular expression -------------------------------------------------------------------------------- G[AG]CCTTG[AG] -------------------------------------------------------------------------------- Time 13.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAAAAA MEME-3 width = 8 sites = 27 llr = 253 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9a1aa99a pos.-specific C 1:7::1:: probability G ::1::::: matrix T ::::::1: bits 2.0 * ** * 1.8 * ** * 1.6 * ** ** 1.4 ** ***** Relative 1.2 ** ***** Entropy 1.0 ** ***** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10778380-10778500 83 1.32e-05 CTAATCGGCG AACAAAAA TGTCATTGAG chr3L:2583625-2583745 100 1.32e-05 ACAGAAATAA AACAAAAA TAAAAACAAC chr2R:12748306-12748426 112 1.32e-05 AAAAAAAAAA AACAAAAA G chr3L:3733204-3733324 34 1.32e-05 AAAAGAATAA AACAAAAA AATGCCGAAA chr3R:14013920-14014040 67 1.32e-05 TAAAGGTACC AACAAAAA CAACAAAAGC chr3R:24026658-24026778 33 1.32e-05 ACAGCGAAAA AACAAAAA TTCAGCCAAC chr3L:1204384-1204504 40 1.32e-05 GAAAACAGCA AACAAAAA ACACAGAACG chr3L:2888283-2888403 52 1.32e-05 GTAGGAGCCA AACAAAAA GTGTCTTGAA chr3R:27153995-27154115 4 1.32e-05 ATA AACAAAAA GCAGCTGATG chr3L:5607982-5608102 51 1.32e-05 TCATTTATGC AACAAAAA AATGATAAAG chrX:13394877-13394997 17 2.57e-05 AACAATCCCA AAAAAAAA ACCCTTCAAG chrX:11515566-11515686 3 2.57e-05 GG AAAAAAAA GCCACAACAA chr3R:31604734-31604854 78 2.57e-05 CCCACCCACC AAAAAAAA CCCGTTCCAA chr2R:22925638-22925758 73 2.57e-05 CTGACCCCCA AAAAAAAA CAAAACTAAC chr3L:16028785-16028905 94 3.96e-05 GCGTATGATT AACAACAA TTTCTTGCCA chr3L:22733692-22733812 51 3.96e-05 TTAAAACTGA AACAACAA TTGTTGTTCT chr3L:2499250-2499370 102 3.96e-05 AAGTTTACCC AACAACAA ACAAAATGTG chr2L:1634619-1634739 6 3.96e-05 TACAC AACAACAA AACGAATGAA chr3L:140110-140230 69 5.27e-05 AATTAAGGTG AAGAAAAA GGCCAGGCAT chr2R:18691949-18692069 7 5.27e-05 GCGATA AAGAAAAA TAGAAATGAA chr2R:10528682-10528802 1 5.27e-05 . AAGAAAAA ATTCACAACC chrX:2303076-2303196 70 7.97e-05 GCGCATATCA AACAAATA TCTAGAGGCT chr2R:20939279-20939399 90 7.97e-05 AGACATCTCA CACAAAAA TACATACATA chr2R:15846893-15847013 25 7.97e-05 TACCCGTACC AACAAATA GAAGTGTAGC chr3L:12203554-12203674 89 7.97e-05 GTGGGTTACA AACAAATA AAAATAAATT chr3L:9431960-9432080 101 7.97e-05 ACTGCCCACA CACAAAAA GATTCTCgag chr3L:18057172-18057292 34 7.97e-05 GCTGAATACA CACAAAAA ATTAACACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10778380-10778500 1.3e-05 82_[+3]_30 chr3L:2583625-2583745 1.3e-05 99_[+3]_13 chr2R:12748306-12748426 1.3e-05 111_[+3]_1 chr3L:3733204-3733324 1.3e-05 33_[+3]_79 chr3R:14013920-14014040 1.3e-05 66_[+3]_46 chr3R:24026658-24026778 1.3e-05 32_[+3]_80 chr3L:1204384-1204504 1.3e-05 39_[+3]_73 chr3L:2888283-2888403 1.3e-05 51_[+3]_61 chr3R:27153995-27154115 1.3e-05 3_[+3]_109 chr3L:5607982-5608102 1.3e-05 50_[+3]_62 chrX:13394877-13394997 2.6e-05 16_[+3]_96 chrX:11515566-11515686 2.6e-05 2_[+3]_110 chr3R:31604734-31604854 2.6e-05 77_[+3]_35 chr2R:22925638-22925758 2.6e-05 72_[+3]_40 chr3L:16028785-16028905 4e-05 93_[+3]_19 chr3L:22733692-22733812 4e-05 50_[+3]_62 chr3L:2499250-2499370 4e-05 101_[+3]_11 chr2L:1634619-1634739 4e-05 5_[+3]_107 chr3L:140110-140230 5.3e-05 68_[+3]_44 chr2R:18691949-18692069 5.3e-05 6_[+3]_106 chr2R:10528682-10528802 5.3e-05 [+3]_112 chrX:2303076-2303196 8e-05 69_[+3]_43 chr2R:20939279-20939399 8e-05 89_[+3]_23 chr2R:15846893-15847013 8e-05 24_[+3]_88 chr3L:12203554-12203674 8e-05 88_[+3]_24 chr3L:9431960-9432080 8e-05 100_[+3]_12 chr3L:18057172-18057292 8e-05 33_[+3]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAAAAA width=8 seqs=27 chr3R:10778380-10778500 ( 83) AACAAAAA 1 chr3L:2583625-2583745 ( 100) AACAAAAA 1 chr2R:12748306-12748426 ( 112) AACAAAAA 1 chr3L:3733204-3733324 ( 34) AACAAAAA 1 chr3R:14013920-14014040 ( 67) AACAAAAA 1 chr3R:24026658-24026778 ( 33) AACAAAAA 1 chr3L:1204384-1204504 ( 40) AACAAAAA 1 chr3L:2888283-2888403 ( 52) AACAAAAA 1 chr3R:27153995-27154115 ( 4) AACAAAAA 1 chr3L:5607982-5608102 ( 51) AACAAAAA 1 chrX:13394877-13394997 ( 17) AAAAAAAA 1 chrX:11515566-11515686 ( 3) AAAAAAAA 1 chr3R:31604734-31604854 ( 78) AAAAAAAA 1 chr2R:22925638-22925758 ( 73) AAAAAAAA 1 chr3L:16028785-16028905 ( 94) AACAACAA 1 chr3L:22733692-22733812 ( 51) AACAACAA 1 chr3L:2499250-2499370 ( 102) AACAACAA 1 chr2L:1634619-1634739 ( 6) AACAACAA 1 chr3L:140110-140230 ( 69) AAGAAAAA 1 chr2R:18691949-18692069 ( 7) AAGAAAAA 1 chr2R:10528682-10528802 ( 1) AAGAAAAA 1 chrX:2303076-2303196 ( 70) AACAAATA 1 chr2R:20939279-20939399 ( 90) CACAAAAA 1 chr2R:15846893-15847013 ( 25) AACAAATA 1 chr3L:12203554-12203674 ( 89) AACAAATA 1 chr3L:9431960-9432080 ( 101) CACAAAAA 1 chr3L:18057172-18057292 ( 34) CACAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 1.0e-002 186 -120 -1140 -1140 203 -1140 -1140 -1140 -72 153 -120 -1140 203 -1140 -1140 -1140 203 -1140 -1140 -1140 180 -79 -1140 -1140 186 -1140 -1140 -114 203 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.0e-002 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.148148 0.740741 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.851852 0.148148 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAAAA MEME-3 regular expression -------------------------------------------------------------------------------- AACAAAAA -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKTTGTT MEME-4 width = 8 sites = 69 llr = 517 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1:1:: pos.-specific C :1:2:::: probability G :241:6:: matrix T a665a3aa bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 * * ** Entropy 1.0 * * * ** (10.8 bits) 0.8 *** * ** 0.6 *** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel TTTTTGTT consensus GGC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20731572-20731692 32 1.31e-05 TTTTTTCACT TTTTTGTT TACACTAAGA chrX:1262639-1262759 61 1.31e-05 ggcttttggc tttttgtt tctggctttc chr3L:18782798-18782918 8 1.31e-05 ttttttt tttttGTT ATTTCTGTAG chr2L:1638299-1638419 110 1.31e-05 GATTCGTTAA TTTTTGTT CAT chr3L:5780252-5780372 112 2.69e-05 GATTCGTGTA TTGTTGTT C chr3R:14013920-14014040 14 2.69e-05 gttgttgttc ttgttgtt actgctgctg chr2R:10528682-10528802 81 2.69e-05 GCTTCGGGCA TTGTTGTT CTTTCTGATT chr3L:649539-649659 15 2.69e-05 CGCGCTTGTT TTGTTGTT TGCTCAAGTG chrX:16696799-16696919 26 2.69e-05 TGCACTAGCA TTGTTGTT ATATAAACAC chr3L:22733692-22733812 59 2.69e-05 GAAACAACAA TTGTTGTT CTAAAAGATT chr3L:17924485-17924605 112 2.69e-05 gcaagtatcg ttgttgtt g chr3L:17605009-17605129 67 2.69e-05 TGTAGGGTGC TTGTTGTT GCTTTTACAG chrX:18063522-18063642 93 3.94e-05 GCCTTTCCCT TTTTTTTT GCCGGTCGCG chrX:9580670-9580790 5 3.94e-05 GTTT TTTTTTTT CGAAGGCAGC chr2R:17459603-17459723 105 3.94e-05 TGTTTCCCAT TTTTTTTT TCTTCGGA chr2L:12488873-12488993 19 3.94e-05 TATTAAGTTC TTTTTTTT CTTTTCACGT chr2L:1629339-1629459 46 3.94e-05 TGTGCAAGTT TTTTTTTT TGGACTTGGG chrX:3399973-3400093 113 3.94e-05 tctttttttc tttttttt chr3L:8682070-8682190 103 3.94e-05 tttttttttt tttttttt ttGGTTGTAT chr3L:1204384-1204504 1 5.32e-05 . TTTCTGTT TCTGTTTGAG chr2L:2731788-2731908 29 5.32e-05 TCAATCCGAG TTTCTGTT TCCAGCCCAG chr3L:2499250-2499370 43 5.32e-05 TGTTCTGGAA TTTCTGTT CGCCGCGCAA chr3L:18015670-18015790 61 6.69e-05 tgtaCATACA TGTTTGTT GCTTCTGATT chr2L:8171689-8171809 14 6.69e-05 TAGCTGAATC TGTTTGTT TGCCCAAGGG chr3R:16074279-16074399 15 6.69e-05 GTGTGTTTTG TGTTTGTT TAGGAATTTA chr3L:109289-109409 112 8.00e-05 GTAGTTATGG TTGTTTTT G chr3R:26594005-26594125 37 1.20e-04 TGCGTTTGCG TTGCTGTT GACCCTGAAA chrX:13374641-13374761 19 1.20e-04 CCTTTTCATT TTTTTATT CGCGCTTGAA chr2L:5147549-5147669 2 1.20e-04 T TTTATGTT TGTCAAATAT chr3R:16218421-16218541 109 1.20e-04 GCCCCACGAC TTGCTGTT GTTG chr3L:18305930-18306050 31 1.20e-04 CGGCAAAAGC TTTTTATT TCTCACCCAA chr3R:27153995-27154115 40 1.20e-04 GGGCATGGCG TTTTTATT CCATAAATAT chr3R:28897999-28898119 23 1.20e-04 TGTTAACGCT TTTTTATT ATATTTATAT chr3R:5860869-5860989 25 1.20e-04 AAAATGCTTG TTTATGTT TGCCACGACT chr2R:9831514-9831634 33 1.48e-04 GTATTTGCTA TTTGTGTT AGTATTATTT chr3R:10356078-10356198 26 1.48e-04 AGGTCAGTGT TTTGTGTT TTCTGCTCCG chr2L:5742562-5742682 30 1.75e-04 GCGCTGGCGC TTTCTTTT ACAATAGGCG chr3L:8628598-8628718 109 2.15e-04 AGGTCGCAAT TTGATGTT TGGC chr3L:18998030-18998150 59 2.15e-04 ACCTCTCAGC TGTTTTTT CACGCGGTTT chr3L:17966298-17966418 40 2.15e-04 CTTGTTCTCG TTGTTATT GTAAATTTTG chr2R:6867883-6868003 68 2.58e-04 CTTTCTACGC TGTCTGTT TTTGGCCACA chr2L:20399441-20399561 6 2.58e-04 ACATG TTGGTGTT GGCTGGCATG chr2R:9401704-9401824 57 2.58e-04 AAAGTATGCG TCGTTGTT TCCTTACCCC chr3L:12494598-12494718 51 2.58e-04 TCGAATGTGT TTGGTGTT GTCATTTCGT chr3L:14558116-14558236 1 2.58e-04 . TCGTTGTT TCTCCTCGAA chr3L:6193842-6193962 26 2.58e-04 CAACAGCAGA TGTCTGTT TGCGGGTGTG chr3R:20168137-20168257 94 2.85e-04 GCAGCTGTTT TTGCTTTT ACCCTAGGTG chr2R:16331957-16332077 16 2.85e-04 ATGTATATAT TTTATTTT CAGGGGCGAC chr2L:8298638-8298758 70 3.24e-04 GGCGTGCGAA TCTTTTTT GCAGCGCCCC chr3L:3733204-3733324 100 3.24e-04 ATAGTTTGTA TCTTTTTT TCCTCCTCCC chr2L:12503138-12503258 79 3.52e-04 GCCCTTTCTA TGGTTTTT AGCCATGCCA chr3L:13230454-13230574 31 3.52e-04 AAGCTCCCAC TCTCTGTT GTTATCAGGC chr2R:12034384-12034504 109 3.94e-04 GATTTCCATT TGTTTATT TCTG chr2R:20939279-20939399 108 3.94e-04 TACATACATA TGTATGTT CGATC chr3R:6383520-6383640 107 4.09e-04 tgcgcgtgtt tgtgtgtt ggtggg chr3R:27609798-27609918 37 4.09e-04 TGAGTGGCAA TGTGTGTT AGCGTTGCTG chr3R:9437850-9437970 104 4.09e-04 tgtatgtgcg tgtgtgtT CGTTTGAAA chr3L:17615428-17615548 86 4.09e-04 TGTGCCGAAT TGTGTGTT GTGGGGGCAG chr3R:12561295-12561415 80 4.22e-04 CGCTTTTCCG TTGATTTT CCGTAGCTTT chr3R:26955698-26955818 91 4.89e-04 TTGTTACCCA TTTATATT CGCACTTTGC chr3L:5607982-5608102 88 4.89e-04 TTCGGGTTTG TTTATATT GTGTCTCACC chrX:15643256-15643376 45 4.89e-04 CATTTGTATC TTTATATT TGGGTAGCTT chr2R:13587501-13587621 46 5.44e-04 GAGGATTTTC TCGCTGTT TGGACAGGTT chr2R:24956180-24956300 8 5.44e-04 GCCGCAG TCGCTGTT TAGGGGAACA chr2L:15003935-15004055 109 5.44e-04 GTTTATTCGA TCGCTGTT GGAC chr3R:18733732-18733852 89 5.44e-04 GCCATGGCCA TCGCTGTT GGTCTTTGTG chr3L:9128760-9128880 9 6.56e-04 AAAGGTGT TGGCTTTT TCAGAAGTTC chr3L:455329-455449 52 6.56e-04 AGCTGTGGAA TGGCTTTT ATGGCCATCA chr3L:20398979-20399099 97 7.26e-04 AAAATTCGGC TCGTTATT TGGTTGTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20731572-20731692 1.3e-05 31_[+4]_81 chrX:1262639-1262759 1.3e-05 60_[+4]_52 chr3L:18782798-18782918 1.3e-05 7_[+4]_105 chr2L:1638299-1638419 1.3e-05 109_[+4]_3 chr3L:5780252-5780372 2.7e-05 111_[+4]_1 chr3R:14013920-14014040 2.7e-05 13_[+4]_99 chr2R:10528682-10528802 2.7e-05 80_[+4]_32 chr3L:649539-649659 2.7e-05 14_[+4]_98 chrX:16696799-16696919 2.7e-05 25_[+4]_87 chr3L:22733692-22733812 2.7e-05 58_[+4]_54 chr3L:17924485-17924605 2.7e-05 111_[+4]_1 chr3L:17605009-17605129 2.7e-05 66_[+4]_46 chrX:18063522-18063642 3.9e-05 92_[+4]_20 chrX:9580670-9580790 3.9e-05 4_[+4]_108 chr2R:17459603-17459723 3.9e-05 104_[+4]_8 chr2L:12488873-12488993 3.9e-05 18_[+4]_94 chr2L:1629339-1629459 3.9e-05 45_[+4]_67 chrX:3399973-3400093 3.9e-05 112_[+4] chr3L:8682070-8682190 3.9e-05 102_[+4]_10 chr3L:1204384-1204504 5.3e-05 [+4]_112 chr2L:2731788-2731908 5.3e-05 28_[+4]_84 chr3L:2499250-2499370 5.3e-05 42_[+4]_70 chr3L:18015670-18015790 6.7e-05 60_[+4]_52 chr2L:8171689-8171809 6.7e-05 13_[+4]_99 chr3R:16074279-16074399 6.7e-05 14_[+4]_98 chr3L:109289-109409 8e-05 111_[+4]_1 chr3R:26594005-26594125 0.00012 36_[+4]_76 chrX:13374641-13374761 0.00012 18_[+4]_94 chr2L:5147549-5147669 0.00012 1_[+4]_111 chr3R:16218421-16218541 0.00012 108_[+4]_4 chr3L:18305930-18306050 0.00012 30_[+4]_82 chr3R:27153995-27154115 0.00012 39_[+4]_73 chr3R:28897999-28898119 0.00012 22_[+4]_90 chr3R:5860869-5860989 0.00012 24_[+4]_88 chr2R:9831514-9831634 0.00015 32_[+4]_80 chr3R:10356078-10356198 0.00015 25_[+4]_87 chr2L:5742562-5742682 0.00018 29_[+4]_83 chr3L:8628598-8628718 0.00022 108_[+4]_4 chr3L:18998030-18998150 0.00022 58_[+4]_54 chr3L:17966298-17966418 0.00022 39_[+4]_73 chr2R:6867883-6868003 0.00026 67_[+4]_45 chr2L:20399441-20399561 0.00026 5_[+4]_107 chr2R:9401704-9401824 0.00026 56_[+4]_56 chr3L:12494598-12494718 0.00026 50_[+4]_62 chr3L:14558116-14558236 0.00026 [+4]_112 chr3L:6193842-6193962 0.00026 25_[+4]_87 chr3R:20168137-20168257 0.00028 93_[+4]_19 chr2R:16331957-16332077 0.00028 15_[+4]_97 chr2L:8298638-8298758 0.00032 69_[+4]_43 chr3L:3733204-3733324 0.00032 99_[+4]_13 chr2L:12503138-12503258 0.00035 78_[+4]_34 chr3L:13230454-13230574 0.00035 30_[+4]_82 chr2R:12034384-12034504 0.00039 108_[+4]_4 chr2R:20939279-20939399 0.00039 107_[+4]_5 chr3R:6383520-6383640 0.00041 106_[+4]_6 chr3R:27609798-27609918 0.00041 36_[+4]_76 chr3R:9437850-9437970 0.00041 103_[+4]_9 chr3L:17615428-17615548 0.00041 85_[+4]_27 chr3R:12561295-12561415 0.00042 79_[+4]_33 chr3R:26955698-26955818 0.00049 90_[+4]_22 chr3L:5607982-5608102 0.00049 87_[+4]_25 chrX:15643256-15643376 0.00049 44_[+4]_68 chr2R:13587501-13587621 0.00054 45_[+4]_67 chr2R:24956180-24956300 0.00054 7_[+4]_105 chr2L:15003935-15004055 0.00054 108_[+4]_4 chr3R:18733732-18733852 0.00054 88_[+4]_24 chr3L:9128760-9128880 0.00066 8_[+4]_104 chr3L:455329-455449 0.00066 51_[+4]_61 chr3L:20398979-20399099 0.00073 96_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKTTGTT width=8 seqs=69 chr3L:20731572-20731692 ( 32) TTTTTGTT 1 chrX:1262639-1262759 ( 61) TTTTTGTT 1 chr3L:18782798-18782918 ( 8) TTTTTGTT 1 chr2L:1638299-1638419 ( 110) TTTTTGTT 1 chr3L:5780252-5780372 ( 112) TTGTTGTT 1 chr3R:14013920-14014040 ( 14) TTGTTGTT 1 chr2R:10528682-10528802 ( 81) TTGTTGTT 1 chr3L:649539-649659 ( 15) TTGTTGTT 1 chrX:16696799-16696919 ( 26) TTGTTGTT 1 chr3L:22733692-22733812 ( 59) TTGTTGTT 1 chr3L:17924485-17924605 ( 112) TTGTTGTT 1 chr3L:17605009-17605129 ( 67) TTGTTGTT 1 chrX:18063522-18063642 ( 93) TTTTTTTT 1 chrX:9580670-9580790 ( 5) TTTTTTTT 1 chr2R:17459603-17459723 ( 105) TTTTTTTT 1 chr2L:12488873-12488993 ( 19) TTTTTTTT 1 chr2L:1629339-1629459 ( 46) TTTTTTTT 1 chrX:3399973-3400093 ( 113) TTTTTTTT 1 chr3L:8682070-8682190 ( 103) TTTTTTTT 1 chr3L:1204384-1204504 ( 1) TTTCTGTT 1 chr2L:2731788-2731908 ( 29) TTTCTGTT 1 chr3L:2499250-2499370 ( 43) TTTCTGTT 1 chr3L:18015670-18015790 ( 61) TGTTTGTT 1 chr2L:8171689-8171809 ( 14) TGTTTGTT 1 chr3R:16074279-16074399 ( 15) TGTTTGTT 1 chr3L:109289-109409 ( 112) TTGTTTTT 1 chr3R:26594005-26594125 ( 37) TTGCTGTT 1 chrX:13374641-13374761 ( 19) TTTTTATT 1 chr2L:5147549-5147669 ( 2) TTTATGTT 1 chr3R:16218421-16218541 ( 109) TTGCTGTT 1 chr3L:18305930-18306050 ( 31) TTTTTATT 1 chr3R:27153995-27154115 ( 40) TTTTTATT 1 chr3R:28897999-28898119 ( 23) TTTTTATT 1 chr3R:5860869-5860989 ( 25) TTTATGTT 1 chr2R:9831514-9831634 ( 33) TTTGTGTT 1 chr3R:10356078-10356198 ( 26) TTTGTGTT 1 chr2L:5742562-5742682 ( 30) TTTCTTTT 1 chr3L:8628598-8628718 ( 109) TTGATGTT 1 chr3L:18998030-18998150 ( 59) TGTTTTTT 1 chr3L:17966298-17966418 ( 40) TTGTTATT 1 chr2R:6867883-6868003 ( 68) TGTCTGTT 1 chr2L:20399441-20399561 ( 6) TTGGTGTT 1 chr2R:9401704-9401824 ( 57) TCGTTGTT 1 chr3L:12494598-12494718 ( 51) TTGGTGTT 1 chr3L:14558116-14558236 ( 1) TCGTTGTT 1 chr3L:6193842-6193962 ( 26) TGTCTGTT 1 chr3R:20168137-20168257 ( 94) TTGCTTTT 1 chr2R:16331957-16332077 ( 16) TTTATTTT 1 chr2L:8298638-8298758 ( 70) TCTTTTTT 1 chr3L:3733204-3733324 ( 100) TCTTTTTT 1 chr2L:12503138-12503258 ( 79) TGGTTTTT 1 chr3L:13230454-13230574 ( 31) TCTCTGTT 1 chr2R:12034384-12034504 ( 109) TGTTTATT 1 chr2R:20939279-20939399 ( 108) TGTATGTT 1 chr3R:6383520-6383640 ( 107) TGTGTGTT 1 chr3R:27609798-27609918 ( 37) TGTGTGTT 1 chr3R:9437850-9437970 ( 104) TGTGTGTT 1 chr3L:17615428-17615548 ( 86) TGTGTGTT 1 chr3R:12561295-12561415 ( 80) TTGATTTT 1 chr3R:26955698-26955818 ( 91) TTTATATT 1 chr3L:5607982-5608102 ( 88) TTTATATT 1 chrX:15643256-15643376 ( 45) TTTATATT 1 chr2R:13587501-13587621 ( 46) TCGCTGTT 1 chr2R:24956180-24956300 ( 8) TCGCTGTT 1 chr2L:15003935-15004055 ( 109) TCGCTGTT 1 chr3R:18733732-18733852 ( 89) TCGCTGTT 1 chr3L:9128760-9128880 ( 9) TGGCTTTT 1 chr3L:455329-455449 ( 52) TGGCTTTT 1 chr3L:20398979-20399099 ( 97) TCGTTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4486 E= 2.1e-001 -1275 -1275 -1275 203 -1275 -82 -23 138 -1275 -1275 62 132 -90 -14 -114 109 -1275 -1275 -1275 203 -75 -1275 122 9 -1275 -1275 -1275 203 -1275 -1275 -1275 203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.1e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.144928 0.217391 0.637681 0.000000 0.000000 0.391304 0.608696 0.130435 0.231884 0.115942 0.521739 0.000000 0.000000 0.000000 1.000000 0.144928 0.000000 0.594203 0.260870 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTGTT MEME-4 regular expression -------------------------------------------------------------------------------- T[TG][TG][TC]T[GT]TT -------------------------------------------------------------------------------- Time 25.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-5 width = 8 sites = 26 llr = 231 E-value = 9.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C 1:::1::: probability G :a2a2a:a matrix T 9:8:5:a: bits 2.0 * *** 1.8 * * *** 1.6 ** * *** 1.4 ** * *** Relative 1.2 **** *** Entropy 1.0 **** *** (12.8 bits) 0.8 **** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15068711-15068831 71 1.50e-05 CAAGGCCCAA TGTGTGTG CGAGGCCAGC chr3L:17958319-17958439 66 1.50e-05 CCGATGCTTG TGTGTGTG TGCTTTCATT chr3L:12203554-12203674 72 1.50e-05 ATTTGGGGTG TGTGTGTG TGGGTTACAA chr3R:6383520-6383640 91 1.50e-05 TCAAGgtgtg tgtgtgtg cgcgtgtttg chr2R:11628885-11629005 61 1.50e-05 ATTTTCTTTG TGTGTGTG TGCGTGTTTG chr3R:27153995-27154115 65 1.50e-05 TATATGCATA TGTGTGTG TTTGTGGGTG chr3R:27609798-27609918 17 1.50e-05 CCACTGCGGG TGTGTGTG TGTGAGTGGC chr2R:16331957-16332077 106 1.50e-05 TACGCTGgtg tgtgtgtg tatctgt chr3L:18034617-18034737 11 4.56e-05 AATAGAGTAA TGTGGGTG AGGTCAATAC chr2R:7953263-7953383 31 4.56e-05 CAGACGCTTA TGTGAGTG ATGCTGATGA chrX:2638973-2639093 87 4.56e-05 TGTGTGGATG TGTGGGTG GTGCAGAAGT chr3L:6193842-6193962 40 4.56e-05 TGTTTGCGGG TGTGGGTG CAAAATGCCC chr2L:5975175-5975295 110 4.56e-05 TGAAAATTTG TGTGAGTG TGT chr3R:19902462-19902582 48 4.56e-05 ATCAGATGCG TGTGAGTG CGTGAATGTA chr2R:22925638-22925758 34 4.56e-05 CGCAAGTGAG TGTGAGTG CGAGTGAGAG chr3L:12411452-12411572 95 6.13e-05 TTTTTCCCGG TGGGTGTG ACGGGGTGTG chrX:17090530-17090650 58 6.13e-05 TATGGACTCA TGGGTGTG CTATCCATCT chr3L:20398979-20399099 109 7.70e-05 GTTATTTGGT TGTGCGTG TGTG chr3L:18305930-18306050 110 7.70e-05 TCTTCATTTT TGTGCGTG CGA chr3R:4458824-4458944 90 1.09e-04 TGGTCGGAAC TGGGAGTG GCGGTATGGG chr2L:18657766-18657886 89 1.09e-04 TGGCGACAGT TGGGGGTG ACATTAAATA chr3R:31039012-31039132 65 1.09e-04 gagatgggga tgggggtg gacatATCAC chrX:13210588-13210708 110 1.25e-04 CTAAACTCAG CGTGTGTG CAC chr2R:18547327-18547447 96 1.25e-04 TCCAACGAGG CGTGTGTG GCCTCCAAGT chr2L:9244414-9244534 35 1.41e-04 CCGGCGATGA TGGGCGTG GGCGGCATGG chr3R:9437850-9437970 94 1.56e-04 tgtgtgtatg tgtatgtg cgtgtgtgtT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15068711-15068831 1.5e-05 70_[+5]_42 chr3L:17958319-17958439 1.5e-05 65_[+5]_47 chr3L:12203554-12203674 1.5e-05 71_[+5]_41 chr3R:6383520-6383640 1.5e-05 90_[+5]_22 chr2R:11628885-11629005 1.5e-05 60_[+5]_52 chr3R:27153995-27154115 1.5e-05 64_[+5]_48 chr3R:27609798-27609918 1.5e-05 16_[+5]_96 chr2R:16331957-16332077 1.5e-05 105_[+5]_7 chr3L:18034617-18034737 4.6e-05 10_[+5]_102 chr2R:7953263-7953383 4.6e-05 30_[+5]_82 chrX:2638973-2639093 4.6e-05 86_[+5]_26 chr3L:6193842-6193962 4.6e-05 39_[+5]_73 chr2L:5975175-5975295 4.6e-05 109_[+5]_3 chr3R:19902462-19902582 4.6e-05 47_[+5]_65 chr2R:22925638-22925758 4.6e-05 33_[+5]_79 chr3L:12411452-12411572 6.1e-05 94_[+5]_18 chrX:17090530-17090650 6.1e-05 57_[+5]_55 chr3L:20398979-20399099 7.7e-05 108_[+5]_4 chr3L:18305930-18306050 7.7e-05 109_[+5]_3 chr3R:4458824-4458944 0.00011 89_[+5]_23 chr2L:18657766-18657886 0.00011 88_[+5]_24 chr3R:31039012-31039132 0.00011 64_[+5]_48 chrX:13210588-13210708 0.00012 109_[+5]_3 chr2R:18547327-18547447 0.00012 95_[+5]_17 chr2L:9244414-9244534 0.00014 34_[+5]_78 chr3R:9437850-9437970 0.00016 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=26 chrX:15068711-15068831 ( 71) TGTGTGTG 1 chr3L:17958319-17958439 ( 66) TGTGTGTG 1 chr3L:12203554-12203674 ( 72) TGTGTGTG 1 chr3R:6383520-6383640 ( 91) TGTGTGTG 1 chr2R:11628885-11629005 ( 61) TGTGTGTG 1 chr3R:27153995-27154115 ( 65) TGTGTGTG 1 chr3R:27609798-27609918 ( 17) TGTGTGTG 1 chr2R:16331957-16332077 ( 106) TGTGTGTG 1 chr3L:18034617-18034737 ( 11) TGTGGGTG 1 chr2R:7953263-7953383 ( 31) TGTGAGTG 1 chrX:2638973-2639093 ( 87) TGTGGGTG 1 chr3L:6193842-6193962 ( 40) TGTGGGTG 1 chr2L:5975175-5975295 ( 110) TGTGAGTG 1 chr3R:19902462-19902582 ( 48) TGTGAGTG 1 chr2R:22925638-22925758 ( 34) TGTGAGTG 1 chr3L:12411452-12411572 ( 95) TGGGTGTG 1 chrX:17090530-17090650 ( 58) TGGGTGTG 1 chr3L:20398979-20399099 ( 109) TGTGCGTG 1 chr3L:18305930-18306050 ( 110) TGTGCGTG 1 chr3R:4458824-4458944 ( 90) TGGGAGTG 1 chr2L:18657766-18657886 ( 89) TGGGGGTG 1 chr3R:31039012-31039132 ( 65) TGGGGGTG 1 chrX:13210588-13210708 ( 110) CGTGTGTG 1 chr2R:18547327-18547447 ( 96) CGTGTGTG 1 chr2L:9244414-9244534 ( 35) TGGGCGTG 1 chr3R:9437850-9437970 ( 94) TGTATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 9.0e+003 -1134 -173 -1134 192 -1134 -1134 197 -1134 -1134 -1134 -14 165 -266 -1134 191 -1134 -34 -115 -41 103 -1134 -1134 197 -1134 -1134 -1134 -1134 203 -1134 -1134 197 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 9.0e+003 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.769231 0.038462 0.000000 0.961538 0.000000 0.192308 0.115385 0.192308 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- TG[TG]GTGTG -------------------------------------------------------------------------------- Time 31.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18057172-18057292 2.57e-02 33_[+3(7.97e-05)]_79 chr2R:11668547-11668667 5.19e-01 120 chr2L:1634619-1634739 2.36e-04 5_[+3(3.96e-05)]_107 chr3L:2499250-2499370 2.60e-04 42_[+4(5.32e-05)]_51_[+3(3.96e-05)]_\ 11 chrX:9897741-9897861 3.95e-04 3_[+2(6.11e-05)]_45_[+1(1.51e-05)]_\ 56 chr3L:18798982-18799102 6.10e-02 20_[+1(1.51e-05)]_4_[+1(6.18e-05)]_\ 51_[+1(1.51e-05)]_21 chr3L:8682070-8682190 8.03e-03 60_[+1(4.67e-05)]_20_[+4(3.94e-05)]_\ [+4(3.94e-05)]_[+4(3.94e-05)]_8 chrX:10369407-10369527 2.62e-01 120 chr3L:9423606-9423726 1.16e-01 107_[+1(1.51e-05)]_5 chr2R:17402145-17402265 2.93e-02 48_[+1(1.51e-05)]_64 chrX:623494-623614 2.02e-01 120 chr3L:17476652-17476772 4.67e-03 120 chr3L:17605009-17605129 3.50e-02 66_[+4(2.69e-05)]_46 chr2L:19402814-19402934 5.17e-05 45_[+1(4.67e-05)]_13_[+2(1.51e-05)]_\ 46 chr3R:31603364-31603484 6.10e-01 120 chr3R:5860869-5860989 3.85e-04 7_[+2(1.51e-05)]_105 chr2L:13459136-13459256 1.15e-01 90_[+2(6.11e-05)]_22 chr3L:3407614-3407734 3.76e-02 120 chr3R:18733732-18733852 7.24e-02 120 chr3L:18061380-18061500 3.05e-01 120 chr3L:13866423-13866543 6.95e-03 65_[+2(1.51e-05)]_20_[+1(4.67e-05)]_\ 19 chr3L:17615428-17615548 8.19e-03 60_[+2(4.67e-05)]_52 chrX:17090530-17090650 3.80e-03 57_[+5(6.13e-05)]_15_[+1(4.67e-05)]_\ 32 chr3L:17924485-17924605 1.20e-02 111_[+4(2.69e-05)]_1 chr3R:16627003-16627123 6.30e-01 120 chr2R:16331957-16332077 5.13e-05 103_[+5(1.50e-05)]_9 chr3R:16147240-16147360 1.04e-01 120 chr3R:12561295-12561415 5.25e-01 120 chr3L:18795983-18796103 7.61e-01 120 chr3L:17928283-17928403 1.05e-01 103_[+2(3.09e-05)]_9 chrX:16767003-16767123 2.38e-01 120 chr3R:9437850-9437970 9.27e-04 18_[+2(6.11e-05)]_71_[+5(7.70e-05)]_\ 15 chr2L:1632069-1632189 3.17e-02 96_[+1(1.51e-05)]_16 chr3L:5632569-5632689 3.71e-02 47_[+2(6.11e-05)]_65 chr3R:16068348-16068468 7.19e-02 120 chr3L:9889300-9889420 9.28e-02 48_[+2(9.28e-05)]_64 chr3R:31039012-31039132 2.47e-02 120 chr2L:1218582-1218702 4.16e-01 120 chr2R:16572447-16572567 5.09e-02 58_[+1(7.83e-05)]_54 chr3L:632245-632365 1.43e-01 120 chr3L:21219322-21219442 1.70e-01 120 chr2R:21365540-21365660 9.49e-01 120 chr3L:17966298-17966418 1.00e-01 120 chr3R:13972766-13972886 1.42e-01 120 chr3R:28897999-28898119 1.43e-01 120 chr3L:13019380-13019500 6.05e-01 120 chr2R:18535954-18536074 4.85e-01 120 chr2L:1638299-1638419 1.57e-04 35_[+2(6.11e-05)]_33_[+4(2.69e-05)]_\ 25_[+4(1.31e-05)]_3 chr2L:15003935-15004055 3.09e-02 75_[+1(4.67e-05)]_37 chr3R:4650268-4650388 1.28e-01 72_[+2(3.09e-05)]_40 chr3L:5808670-5808790 1.41e-01 120 chrX:9878252-9878372 1.64e-01 84_[+1(1.51e-05)]_28 chr3L:22733692-22733812 2.43e-04 22_[+1(4.67e-05)]_20_[+3(3.96e-05)]_\ [+4(2.69e-05)]_54 chr3R:15136928-15137048 4.88e-01 120 chr2R:24956180-24956300 3.55e-03 62_[+1(6.18e-05)]_50 chr3R:9433909-9434029 5.81e-01 120 chr2R:22925638-22925758 6.09e-04 33_[+5(4.56e-05)]_30_[+3(2.57e-05)]_\ 41 chr2L:14027975-14028095 2.85e-01 120 chr2L:15035614-15035734 1.70e-01 120 chr3R:27609798-27609918 3.94e-04 16_[+5(1.50e-05)]_[+5(4.56e-05)]_23_\ [+1(1.51e-05)]_57 chr3R:31604734-31604854 1.93e-03 59_[+1(4.67e-05)]_10_[+3(2.57e-05)]_\ 35 chr3R:29993031-29993151 8.91e-02 7_[+2(9.28e-05)]_105 chr3R:9626389-9626509 1.22e-01 120 chr3R:26463160-26463280 1.24e-01 63_[+1(4.67e-05)]_49 chrX:1287578-1287698 4.75e-02 67_[+2(4.67e-05)]_45 chr3L:11112525-11112645 2.42e-02 101_[+2(3.09e-05)]_11 chrX:15643256-15643376 1.73e-01 120 chr3L:5607982-5608102 1.59e-02 50_[+3(1.32e-05)]_62 chr2R:10282482-10282602 9.84e-01 120 chr3L:18782798-18782918 8.72e-02 7_[+4(1.31e-05)]_105 chr2R:17695402-17695522 8.12e-01 120 chr2L:5742562-5742682 6.83e-05 10_[+1(7.83e-05)]_28_[+2(1.51e-05)]_\ 66 chr3L:15587638-15587758 2.97e-01 120 chrX:2625097-2625217 1.13e-01 87_[+2(1.51e-05)]_25 chr3R:27153995-27154115 6.22e-08 3_[+3(1.32e-05)]_12_[+2(3.09e-05)]_\ 33_[+5(1.50e-05)]_2_[+5(4.56e-05)]_38 chr3R:9527633-9527753 8.44e-02 77_[+1(4.67e-05)]_35 chr2R:12597076-12597196 8.86e-02 36_[+1(1.51e-05)]_76 chr3L:18046825-18046945 3.56e-03 10_[+1(7.83e-05)]_102 chr3R:22524998-22525118 6.67e-02 20_[+1(6.18e-05)]_15_[+1(4.67e-05)]_\ 69 chr3L:9846165-9846285 2.77e-02 87_[+2(4.67e-05)]_25 chr3R:14434341-14434461 2.84e-01 29_[+2(9.28e-05)]_83 chr3L:18305930-18306050 3.53e-04 55_[+1(4.67e-05)]_46_[+5(7.70e-05)]_\ 3 chr2R:9550984-9551104 1.98e-01 120 chr3R:19902462-19902582 5.99e-02 47_[+5(4.56e-05)]_65 chr3L:2888283-2888403 6.91e-02 51_[+3(1.32e-05)]_61 chr2R:11628885-11629005 5.87e-04 58_[+5(1.50e-05)]_[+5(7.70e-05)]_46 chrX:16696799-16696919 1.69e-02 25_[+4(2.69e-05)]_87 chr3R:6383520-6383640 6.06e-05 48_[+2(6.11e-05)]_30_[+5(1.50e-05)]_\ 26 chrX:19527613-19527733 6.08e-01 120 chr3L:9431960-9432080 1.34e-01 100_[+3(7.97e-05)]_12 chr3L:21031070-21031190 1.99e-02 24_[+2(9.28e-05)]_5_[+1(4.67e-05)]_\ 75 chr3L:649539-649659 2.61e-03 14_[+4(2.69e-05)]_98 chr2L:9244414-9244534 3.90e-02 78_[+2(9.28e-05)]_34 chr3R:29116938-29117058 1.65e-01 23_[+1(4.67e-05)]_89 chr2R:19126248-19126368 4.95e-01 120 chr2L:2731788-2731908 6.26e-03 28_[+4(5.32e-05)]_12_[+2(4.67e-05)]_\ 64 chr3L:455329-455449 3.18e-01 120 chr3L:17916156-17916276 5.87e-02 47_[+2(1.51e-05)]_65 chr3L:1204384-1204504 9.03e-05 [+4(5.32e-05)]_31_[+3(1.32e-05)]_57_\ [+1(6.18e-05)]_8 chr2L:6565092-6565212 1.50e-02 72_[+1(1.51e-05)]_40 chr3L:9850267-9850387 3.06e-01 57_[+2(9.28e-05)]_55 chr3R:6419259-6419379 1.26e-01 120 chr3R:16218421-16218541 1.32e-02 52_[+2(1.51e-05)]_60 chr3L:7871483-7871603 7.69e-01 120 chrX:1262639-1262759 1.67e-02 60_[+4(1.31e-05)]_52 chr3R:30483519-30483639 8.98e-02 120 chr3R:22598888-22599008 2.84e-01 120 chr3R:26955698-26955818 2.51e-02 35_[+1(1.51e-05)]_77 chr3R:20168137-20168257 5.80e-02 120 chr3R:4228512-4228632 3.53e-03 22_[+2(4.67e-05)]_17_[+1(1.51e-05)]_\ 65 chr3L:20731572-20731692 2.35e-02 31_[+4(1.31e-05)]_81 chr2R:16583105-16583225 4.94e-01 120 chr2L:5975175-5975295 8.78e-03 20_[+2(6.11e-05)]_81_[+5(4.56e-05)]_\ 3 chr3L:12203554-12203674 2.00e-04 34_[+1(7.83e-05)]_27_[+5(1.50e-05)]_\ 11_[+3(7.97e-05)]_24 chr2L:12052875-12052995 1.30e-01 120 chr2R:7053707-7053827 2.75e-02 32_[+2(9.28e-05)]_80 chr3L:6193842-6193962 1.19e-02 39_[+5(4.56e-05)]_13_[+5(7.70e-05)]_\ 52 chr2L:13014329-13014449 7.42e-02 57_[+1(1.51e-05)]_55 chr2R:23982469-23982589 6.19e-02 98_[+1(4.67e-05)]_14 chr2L:483535-483655 1.89e-01 44_[+2(9.28e-05)]_68 chr3L:21261107-21261227 4.48e-01 120 chr3L:20777633-20777753 6.99e-02 120 chr3L:17964103-17964223 2.23e-01 120 chr3R:23220081-23220201 4.61e-02 120 chr3R:10356078-10356198 6.82e-03 120 chr3R:7498618-7498738 9.12e-01 120 chrX:3399973-3400093 1.06e-01 112_[+4(3.94e-05)] chr3L:14558116-14558236 3.40e-01 120 chr3R:21624659-21624779 5.97e-02 120 chr2L:21234435-21234555 2.63e-01 120 chr3L:20398979-20399099 7.69e-03 108_[+5(7.70e-05)]_4 chr3L:2157592-2157712 3.78e-01 120 chr2L:6773754-6773874 5.74e-01 120 chr2R:20256783-20256903 1.40e-01 120 chr3R:12700617-12700737 4.99e-02 120 chr3R:24026658-24026778 1.32e-01 32_[+3(1.32e-05)]_80 chr3R:26907093-26907213 1.50e-01 64_[+2(1.51e-05)]_48 chr2R:10528682-10528802 1.31e-04 [+3(5.27e-05)]_42_[+2(1.51e-05)]_22_\ [+4(2.69e-05)]_32 chr3L:16780459-16780579 1.33e-01 28_[+2(4.67e-05)]_84 chrX:2638973-2639093 1.27e-03 29_[+2(6.11e-05)]_49_[+5(4.56e-05)]_\ 26 chr2R:20236185-20236305 1.84e-01 120 chr3L:17622291-17622411 9.51e-01 120 chr2R:15846893-15847013 1.51e-01 24_[+3(7.97e-05)]_88 chr2R:16582066-16582186 2.85e-01 120 chr3L:109289-109409 2.40e-02 111_[+4(8.00e-05)]_1 chr3L:12411452-12411572 9.01e-02 94_[+5(6.13e-05)]_18 chr2R:20939279-20939399 2.70e-02 89_[+3(7.97e-05)]_23 chr3R:24799042-24799162 3.76e-01 120 chr2R:24583239-24583359 1.57e-02 61_[+2(1.51e-05)]_51 chr3L:19649542-19649662 7.02e-02 120 chr3R:14798973-14799093 2.33e-02 120 chr3L:16056629-16056749 2.07e-02 120 chr3R:14013920-14014040 3.67e-03 4_[+4(2.69e-05)]_1_[+4(2.69e-05)]_\ 45_[+3(1.32e-05)]_46 chr3L:17921579-17921699 3.98e-03 79_[+1(1.51e-05)]_33 chr2L:1629339-1629459 9.35e-03 43_[+4(3.94e-05)]_69 chr2L:18657766-18657886 4.89e-04 120 chr2L:4905510-4905630 5.70e-03 61_[+2(1.51e-05)]_51 chr3R:4988298-4988418 3.62e-01 120 chr3R:7122321-7122441 5.95e-03 120 chr2R:13500490-13500610 4.06e-01 120 chrX:2049023-2049143 2.73e-01 120 chr3L:8101944-8102064 3.56e-02 120 chr2R:18691949-18692069 9.59e-03 6_[+3(5.27e-05)]_15_[+1(1.51e-05)]_\ 83 chrX:2175507-2175627 1.72e-01 120 chr3R:30091846-30091966 2.60e-01 42_[+1(6.18e-05)]_70 chr3R:13998735-13998855 4.03e-01 120 chr3L:5802371-5802491 2.85e-01 120 chr3L:3733204-3733324 1.14e-03 33_[+3(1.32e-05)]_79 chr3R:16074279-16074399 1.25e-02 14_[+4(6.69e-05)]_98 chr2L:12488873-12488993 1.33e-02 18_[+4(3.94e-05)]_94 chr3L:140110-140230 2.60e-02 68_[+3(5.27e-05)]_44 chr2L:8298638-8298758 2.30e-04 23_[+1(4.67e-05)]_89 chr2L:18818563-18818683 7.48e-02 120 chr2L:126071-126191 7.32e-01 120 chrX:2303076-2303196 4.91e-03 33_[+2(6.11e-05)]_28_[+3(7.97e-05)]_\ 43 chrX:11515566-11515686 2.30e-02 2_[+3(2.57e-05)]_5_[+3(3.96e-05)]_\ 97 chrX:5427394-5427514 1.37e-01 58_[+1(1.51e-05)]_54 chr2R:9272985-9273105 1.21e-01 103_[+1(4.67e-05)]_9 chrX:18055958-18056078 4.62e-01 120 chr2R:12034384-12034504 2.37e-01 120 chr2L:10469083-10469203 7.09e-01 120 chr3L:14547273-14547393 7.11e-02 120 chr2L:5147549-5147669 8.22e-02 120 chr3L:13230454-13230574 6.19e-02 58_[+1(7.83e-05)]_54 chr2R:6813814-6813934 5.13e-01 120 chr3R:5355372-5355492 2.19e-02 106_[+1(1.51e-05)]_6 chr2R:14426259-14426379 1.61e-01 47_[+2(6.11e-05)]_65 chr3L:6707332-6707452 9.06e-01 120 chr2L:8171689-8171809 6.23e-03 13_[+4(6.69e-05)]_99 chr3L:12494598-12494718 1.82e-02 120 chr2R:7063088-7063208 3.49e-01 120 chr2L:13179331-13179451 9.79e-01 120 chr3R:15305272-15305392 3.54e-01 120 chrX:13374641-13374761 3.15e-02 120 chr2R:13587501-13587621 2.71e-02 120 chr3L:16309121-16309241 5.02e-02 120 chr2R:9401704-9401824 2.16e-02 120 chr3R:26594005-26594125 3.49e-02 120 chr2R:17459603-17459723 6.23e-03 80_[+4(3.94e-05)]_15_[+4(3.94e-05)]_\ 9 chr3R:16873503-16873623 1.05e-01 120 chrX:10534678-10534798 3.86e-01 120 chr3R:21702877-21702997 5.24e-02 120 chr3L:5780252-5780372 1.87e-03 68_[+2(6.11e-05)]_35_[+4(2.69e-05)]_\ 1 chr3L:16028785-16028905 3.62e-02 93_[+3(3.96e-05)]_19 chr3R:26981898-26982018 4.11e-01 120 chrX:9580670-9580790 2.06e-03 1_[+4(3.94e-05)]_41_[+2(1.51e-05)]_\ 62 chr2R:8648802-8648922 1.31e-01 120 chr3L:18015670-18015790 7.19e-02 60_[+4(6.69e-05)]_52 chr2R:12748306-12748426 1.74e-03 101_[+3(2.57e-05)]_2_[+3(1.32e-05)]_\ 1 chr3L:1394959-1395079 2.49e-01 120 chr3L:2583625-2583745 6.50e-03 99_[+3(1.32e-05)]_1_[+3(9.29e-05)]_\ 4 chr2R:21605189-21605309 6.13e-03 82_[+1(4.67e-05)]_30 chrX:15048852-15048972 1.88e-01 120 chr3L:17958319-17958439 2.51e-03 63_[+5(1.50e-05)]_30_[+2(1.51e-05)]_\ 11 chr3R:27130637-27130757 1.76e-01 21_[+1(4.67e-05)]_91 chr2L:13803399-13803519 4.91e-01 120 chrX:2029449-2029569 4.86e-02 67_[+2(3.09e-05)]_3_[+2(3.09e-05)]_\ 14_[+2(3.09e-05)]_12 chr3L:18998030-18998150 9.50e-02 120 chr2L:20399441-20399561 2.77e-03 120 chr2R:22073101-22073221 1.42e-01 120 chr3R:14014683-14014803 5.19e-03 120 chrX:2089095-2089215 5.25e-01 120 chr3L:11628388-11628508 4.72e-01 120 chr3L:9128760-9128880 2.27e-01 120 chr3L:3426354-3426474 3.69e-01 120 chr2R:21721095-21721215 3.17e-02 72_[+1(4.67e-05)]_40 chr2L:12503138-12503258 3.04e-02 120 chr3L:16610990-16611110 1.50e-01 120 chr3R:10778380-10778500 3.63e-02 82_[+3(1.32e-05)]_30 chr2R:18547327-18547447 1.66e-02 44_[+1(6.18e-05)]_68 chr3L:3613100-3613220 1.39e-01 57_[+2(3.09e-05)]_55 chr3R:4458824-4458944 6.85e-02 120 chr2R:15424442-15424562 4.93e-01 120 chr3L:17930050-17930170 9.64e-03 53_[+2(6.11e-05)]_59 chrX:13210588-13210708 2.79e-02 120 chr3L:18869601-18869721 4.22e-02 60_[+2(1.51e-05)]_52 chr2R:9831514-9831634 1.95e-02 84_[+2(4.67e-05)]_28 chr3L:1202843-1202963 5.24e-02 120 chr2R:6867883-6868003 3.22e-02 120 chr3R:26332328-26332448 1.25e-01 120 chrX:11869344-11869464 2.33e-02 76_[+1(4.67e-05)]_36 chrX:13394877-13394997 1.14e-03 15_[+3(2.57e-05)]_28_[+3(3.96e-05)]_\ 61 chrX:15068711-15068831 1.80e-03 70_[+5(1.50e-05)]_42 chr3L:17922241-17922361 6.78e-01 120 chrX:18063522-18063642 1.72e-03 21_[+1(6.18e-05)]_62_[+4(3.94e-05)]_\ 21 chr2R:7953263-7953383 3.96e-02 30_[+5(4.56e-05)]_82 chr3L:18034617-18034737 4.23e-02 10_[+5(4.56e-05)]_102 chr3L:21417447-21417567 1.76e-01 101_[+1(4.67e-05)]_11 chr3L:8628598-8628718 1.70e-02 13_[+1(4.67e-05)]_75_[+1(4.67e-05)]_\ 16 chr3R:25304243-25304363 2.43e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************