******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/foxo.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:14027081-14027201 1.0000 120 chr3L:17570593-17570713 1.0000 120 chr3L:12791141-12791261 1.0000 120 chrX:1271258-1271378 1.0000 120 chr3L:22823429-22823549 1.0000 120 chr3L:7530826-7530946 1.0000 120 chr2R:23815977-23816097 1.0000 120 chr3L:8518823-8518943 1.0000 120 chrX:15303705-15303825 1.0000 120 chr2R:13994244-13994364 1.0000 120 chr3L:18013239-18013359 1.0000 120 chr2L:6644754-6644874 1.0000 120 chr2L:5001714-5001834 1.0000 120 chr2L:10269860-10269980 1.0000 120 chr2R:14140384-14140504 1.0000 120 chr2L:8004345-8004465 1.0000 120 chr2R:16161160-16161280 1.0000 120 chr2L:7424359-7424479 1.0000 120 chr3R:4187381-4187501 1.0000 120 chr3L:342968-343088 1.0000 120 chr2L:18564077-18564197 1.0000 120 chr2R:22644726-22644846 1.0000 120 chr3L:2490036-2490156 1.0000 120 chr3R:9387846-9387966 1.0000 120 chr3R:14069576-14069696 1.0000 120 chr3R:14025960-14026080 1.0000 120 chr3L:10663238-10663358 1.0000 120 chr3L:21014680-21014800 1.0000 120 chr2L:12513920-12514040 1.0000 120 chr3L:748566-748686 1.0000 120 chr3L:769223-769343 1.0000 120 chr2R:19415004-19415124 1.0000 120 chr3R:24278784-24278904 1.0000 120 chr2R:16154115-16154235 1.0000 120 chr3L:18812394-18812514 1.0000 120 chr2L:5289422-5289542 1.0000 120 chr3L:7801431-7801551 1.0000 120 chr3R:8306263-8306383 1.0000 120 chr2R:17108683-17108803 1.0000 120 chr2L:7954710-7954830 1.0000 120 chr2L:12545822-12545942 1.0000 120 chr2R:12261582-12261702 1.0000 120 chr3R:7793874-7793994 1.0000 120 chr3R:6388721-6388841 1.0000 120 chr3R:21977237-21977357 1.0000 120 chr3L:18112894-18113014 1.0000 120 chr3L:5277162-5277282 1.0000 120 chr2R:10598392-10598512 1.0000 120 chr3R:9675127-9675247 1.0000 120 chr2R:12198910-12199030 1.0000 120 chr3R:20782733-20782853 1.0000 120 chr3L:17962336-17962456 1.0000 120 chr3L:9358882-9359002 1.0000 120 chr3R:12219690-12219810 1.0000 120 chr3R:22527161-22527281 1.0000 120 chr3L:10738396-10738516 1.0000 120 chr3L:7805493-7805613 1.0000 120 chr3R:10084115-10084235 1.0000 120 chr2R:19394656-19394776 1.0000 120 chrX:1276530-1276650 1.0000 120 chr3R:8670153-8670273 1.0000 120 chr3L:11788941-11789061 1.0000 120 chr2L:3787087-3787207 1.0000 120 chr2R:7779644-7779764 1.0000 120 chr2R:18180136-18180256 1.0000 120 chr2L:5978637-5978757 1.0000 120 chr3R:14513669-14513789 1.0000 120 chr3L:20827304-20827424 1.0000 120 chr3L:7792361-7792481 1.0000 120 chr2R:10473628-10473748 1.0000 120 chr2R:20996696-20996816 1.0000 120 chr2R:10568699-10568819 1.0000 120 chr3R:21630488-21630608 1.0000 120 chr3L:10868241-10868361 1.0000 120 chr3R:23941784-23941904 1.0000 120 chr2L:10794160-10794280 1.0000 120 chr2R:6145666-6145786 1.0000 120 chr3L:3420388-3420508 1.0000 120 chr2L:2886695-2886815 1.0000 120 chr3L:20518228-20518348 1.0000 120 chr3L:19171913-19172033 1.0000 120 chr3R:30811459-30811579 1.0000 120 chr2L:8704970-8705090 1.0000 120 chr2L:9237831-9237951 1.0000 120 chr2L:12493683-12493803 1.0000 120 chr2L:21623698-21623818 1.0000 120 chr3L:9447417-9447537 1.0000 120 chr2L:6643498-6643618 1.0000 120 chr2R:6613088-6613208 1.0000 120 chr3L:9381781-9381901 1.0000 120 chr3R:5570932-5571052 1.0000 120 chr2R:19620120-19620240 1.0000 120 chr2R:13042212-13042332 1.0000 120 chr3L:9468042-9468162 1.0000 120 chr2L:7926477-7926597 1.0000 120 chr3L:548464-548584 1.0000 120 chrX:6981715-6981835 1.0000 120 chr2L:21753725-21753845 1.0000 120 chrX:10927353-10927473 1.0000 120 chr3R:13016083-13016203 1.0000 120 chr3R:7967898-7968018 1.0000 120 chr2R:11175611-11175731 1.0000 120 chr2R:14174856-14174976 1.0000 120 chr3L:319390-319510 1.0000 120 chr2R:17461929-17462049 1.0000 120 chr2R:10156212-10156332 1.0000 120 chr2R:12985813-12985933 1.0000 120 chr3L:9675545-9675665 1.0000 120 chr2R:23659104-23659224 1.0000 120 chr3R:19165720-19165840 1.0000 120 chr2L:12007103-12007223 1.0000 120 chr2L:2999198-2999318 1.0000 120 chr2L:13290646-13290766 1.0000 120 chrX:2642531-2642651 1.0000 120 chr2L:8088052-8088172 1.0000 120 chr3R:23223662-23223782 1.0000 120 chr3R:13051453-13051573 1.0000 120 chr3L:3246945-3247065 1.0000 120 chr2R:21056910-21057030 1.0000 120 chr3R:14286387-14286507 1.0000 120 chr2L:72388-72508 1.0000 120 chr3R:20765979-20766099 1.0000 120 chr3R:17119176-17119296 1.0000 120 chrX:5904626-5904746 1.0000 120 chr3R:19603105-19603225 1.0000 120 chr3R:10001466-10001586 1.0000 120 chr3L:14038310-14038430 1.0000 120 chrX:15320492-15320612 1.0000 120 chrX:15811749-15811869 1.0000 120 chr3R:21829601-21829721 1.0000 120 chr3R:10579738-10579858 1.0000 120 chr3L:17950547-17950667 1.0000 120 chr2L:1668639-1668759 1.0000 120 chr3L:14625033-14625153 1.0000 120 chr3R:30280464-30280584 1.0000 120 chr3L:16974979-16975099 1.0000 120 chr3R:16236573-16236693 1.0000 120 chr3L:7993754-7993874 1.0000 120 chr3R:21606706-21606826 1.0000 120 chr2L:3713096-3713216 1.0000 120 chr3L:18061850-18061970 1.0000 120 chr3R:9954796-9954916 1.0000 120 chr3L:16195515-16195635 1.0000 120 chr2L:67151-67271 1.0000 120 chr3L:21026335-21026455 1.0000 120 chr3R:8854912-8855032 1.0000 120 chrX:15834682-15834802 1.0000 120 chr2R:8240915-8241035 1.0000 120 chr3L:13494458-13494578 1.0000 120 chr3R:26980357-26980477 1.0000 120 chr3R:16264120-16264240 1.0000 120 chr3L:17607098-17607218 1.0000 120 chr3R:14057401-14057521 1.0000 120 chr2R:24964266-24964386 1.0000 120 chr2R:21713304-21713424 1.0000 120 chr3L:18800436-18800556 1.0000 120 chr2L:21250705-21250825 1.0000 120 chr2R:6675749-6675869 1.0000 120 chr3L:6218719-6218839 1.0000 120 chr3L:17577605-17577725 1.0000 120 chrX:17489975-17490095 1.0000 120 chr3R:29215068-29215188 1.0000 120 chr3R:9345057-9345177 1.0000 120 chr3R:11156892-11157012 1.0000 120 chr3R:4403773-4403893 1.0000 120 chr3R:26535718-26535838 1.0000 120 chr3R:9928782-9928902 1.0000 120 chr3L:17576528-17576648 1.0000 120 chr3L:2573059-2573179 1.0000 120 chr3R:4810132-4810252 1.0000 120 chr2R:11637476-11637596 1.0000 120 chrX:7299849-7299969 1.0000 120 chrX:8897995-8898115 1.0000 120 chr3L:20730299-20730419 1.0000 120 chr3R:13684367-13684487 1.0000 120 chr3L:18016665-18016785 1.0000 120 chr2L:6324524-6324644 1.0000 120 chr3R:18742605-18742725 1.0000 120 chr2L:10276980-10277100 1.0000 120 chr3R:24549894-24550014 1.0000 120 chr2L:21237826-21237946 1.0000 120 chr2L:423321-423441 1.0000 120 chr2R:6871938-6872058 1.0000 120 chr3R:31713576-31713696 1.0000 120 chr2R:10238352-10238472 1.0000 120 chr3R:30281564-30281684 1.0000 120 chr3R:10588945-10589065 1.0000 120 chrX:796500-796620 1.0000 120 chr2L:9203501-9203621 1.0000 120 chr2L:18563232-18563352 1.0000 120 chr2R:22242998-22243118 1.0000 120 chr3L:22851867-22851987 1.0000 120 chrX:8063289-8063409 1.0000 120 chr3L:18771441-18771561 1.0000 120 chr3L:128430-128550 1.0000 120 chr2R:22641394-22641514 1.0000 120 chr2L:16284544-16284664 1.0000 120 chr2R:17869088-17869208 1.0000 120 chr3R:22447423-22447543 1.0000 120 chr3R:22781594-22781714 1.0000 120 chr3L:1546628-1546748 1.0000 120 chr3L:17907565-17907685 1.0000 120 chr2L:9175340-9175460 1.0000 120 chr2R:13958038-13958158 1.0000 120 chr3L:14756531-14756651 1.0000 120 chr2L:12507719-12507839 1.0000 120 chr2L:16677067-16677187 1.0000 120 chrX:13988961-13989081 1.0000 120 chr2R:12586887-12587007 1.0000 120 chr3R:29210815-29210935 1.0000 120 chr3L:14757903-14758023 1.0000 120 chr2R:6971744-6971864 1.0000 120 chr3L:17590790-17590910 1.0000 120 chr3L:11324605-11324725 1.0000 120 chr2L:222056-222176 1.0000 120 chr3R:25027578-25027698 1.0000 120 chr2R:10564900-10565020 1.0000 120 chr3R:10054475-10054595 1.0000 120 chr2L:2214025-2214145 1.0000 120 chr2R:6132095-6132215 1.0000 120 chr2R:12705064-12705184 1.0000 120 chr3R:14061512-14061632 1.0000 120 chr3L:12410870-12410990 1.0000 120 chr3R:23888722-23888842 1.0000 120 chr3R:9237024-9237144 1.0000 120 chr2R:11614382-11614502 1.0000 120 chr3L:17992370-17992490 1.0000 120 chr2R:7063815-7063935 1.0000 120 chrX:16599952-16600072 1.0000 120 chr3L:22824866-22824986 1.0000 120 chr2L:4811612-4811732 1.0000 120 chr2L:16315165-16315285 1.0000 120 chr3L:15977689-15977809 1.0000 120 chr3R:18917004-18917124 1.0000 120 chr3R:14361790-14361910 1.0000 120 chr3R:21616366-21616486 1.0000 120 chr2R:22737182-22737302 1.0000 120 chr3L:12850053-12850173 1.0000 120 chr3L:16004643-16004763 1.0000 120 chr3L:12693415-12693535 1.0000 120 chr2R:19616297-19616417 1.0000 120 chr3L:19897467-19897587 1.0000 120 chr2R:17458381-17458501 1.0000 120 chrX:3761748-3761868 1.0000 120 chr3R:14625687-14625807 1.0000 120 chr3L:11534356-11534476 1.0000 120 chr3L:5768969-5769089 1.0000 120 chr3L:17502332-17502452 1.0000 120 chr2L:5237410-5237530 1.0000 120 chr2R:9186306-9186426 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_foxo/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/foxo.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.294 C 0.2 G 0.205 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.294 C 0.2 G 0.205 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CKCTCTYT MEME-1 width = 8 sites = 52 llr = 455 E-value = 1.2e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a:a:72 probability G :6:::3:3 matrix T :4:a:736 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * *** Relative 1.4 * *** Entropy 1.2 ***** * (12.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCTCTCT consensus T GTG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12693415-12693535 69 8.86e-06 CCCGTTTGTG CGCTCTCT CGCTCACACA chr3L:17590790-17590910 111 8.86e-06 GGCGCGCTCT CGCTCTCT CG chr3L:1546628-1546748 71 8.86e-06 CCCACGCCTC CGCTCTCT CAACATCTCG chr3L:18016665-18016785 102 8.86e-06 CGCTCTCGAT CGCTCTCT TTGCGGTTTA chr2L:21250705-21250825 97 8.86e-06 CAGCGCTAAG CGCTCTCT CACCATCTCT chr3R:26980357-26980477 86 8.86e-06 CTGTAGATAT CGCTCTCT GTGGAGCGAA chrX:15811749-15811869 104 8.86e-06 ctcgctcggt cgctctct ctctctggc chr3R:14286387-14286507 84 8.86e-06 TCACATTCGC CGCTCTCT CACTCTGTCG chr3L:19171913-19172033 8 8.86e-06 TCTCGTG CGCTCTCT AGCCCTCTCC chr3L:22851867-22851987 74 2.10e-05 CGTTTATTTT CGCTCTCG TACTTCTCAG chr3R:31713576-31713696 71 2.10e-05 CGCTCTCCCT CGCTCTCG CTGCCAGCAG chrX:7299849-7299969 19 2.10e-05 cctgtttggg cgctctcg cttgctcact chr3L:17576528-17576648 64 2.10e-05 GAATGGGGCT CGCTCGCT CGACTCGCTT chr3R:29215068-29215188 47 2.10e-05 GATTCTCTTT CGCTCGCT CTCCCGCTCT chr3R:19165720-19165840 98 2.10e-05 tgttgttgtt cgctcgct cgttcgtttg chr2L:2886695-2886815 69 2.10e-05 TGCACTCTCT CGCTCTCG CAAACTTTTA chr2R:23815977-23816097 81 2.10e-05 GAGCGTTTCG CGCTCTCG CTCATTTGCC chr2R:12705064-12705184 5 3.39e-05 GCAA CTCTCTCT CCTCTCAATC chrX:2642531-2642651 95 3.39e-05 Ttctctctct ctctctct gtctctccgt chr2L:7926477-7926597 8 3.39e-05 GCTAGct ctctctct ctctcactct chr2L:21623698-21623818 15 3.39e-05 CGATATTCGG CTCTCTCT TACTCGATTT chr3L:2490036-2490156 35 3.39e-05 AGCAGGTTTG CTCTCTCT TGAAGAGCGA chr2R:6132095-6132215 70 3.98e-05 ACTCTTTGTC CGCTCTCC GGCACGTATC chr2L:6324524-6324644 34 3.98e-05 AATTTTCGCC CGCTCTCC GATTGTTTTT chr2R:23659104-23659224 80 3.98e-05 TCGCTCTCCG CGCTCTCC GGCTCTCTCC chrX:6981715-6981835 41 3.98e-05 cgcgccattc cgctctcc gttccaAGCC chr3R:22781594-22781714 95 5.72e-05 TTGTCGTTGC CGCTCGCG TATTTTCATT chr2R:24964266-24964386 112 5.72e-05 AAAGAGAAAA CGCTCGCG G chr3L:17607098-17607218 15 5.72e-05 AGCGAGCTTT CGCTCTTT ATTTTACTCC chr2R:13042212-13042332 101 5.72e-05 TGCTGCCGAT CGCTCTTT GATTCAATGA chr2R:6613088-6613208 14 5.72e-05 cctttacgtt cgctcttt cttccagttt chr3L:14756531-14756651 39 7.50e-05 ctacgtctca ctctctcg ttctcCGGTG chr3L:18800436-18800556 113 7.50e-05 TTCTCTTTTG CTCTCGCT chr3R:13051453-13051573 35 7.50e-05 TATATTGGGG CTCTCTCG GAGATACTTA chr3R:20782733-20782853 39 7.50e-05 TTCGCTCTTT CTCTCGCT TGAGTTTTTT chr3L:14757903-14758023 29 7.90e-05 CTTGTTTGTC CGCTCGCC AACGTTGGAT chr3L:19897467-19897587 109 9.71e-05 TTACGTTACT CGCTCTTG GCTC chr2R:6871938-6872058 84 9.71e-05 TGATTTCATT CGCTCGTT TTTGCAACGT chr3L:17570593-17570713 21 9.71e-05 GTTTTTGCTG CGCTCGTT TGTTTTTTGC chr3R:21616366-21616486 60 1.31e-04 CAATCGTGCC CTCTCTTT CTGGCCTGCG chr3R:20765979-20766099 92 1.31e-04 GCACACGCGA CTCTCGCG CGTTCCCTCA chr2L:13290646-13290766 13 1.31e-04 ACTACGCTTG CTCTCTTT TAAGCTCTCT chr3L:17962336-17962456 26 1.31e-04 GCAGCACTGA CTCTCTTT AGAGCTCTTA chr2L:9175340-9175460 106 1.40e-04 CCCAAATTGC CGCTCTTC GCTACTT chr3L:12791141-12791261 3 1.40e-04 GC CGCTCTTC GAAGCTCTCA chr3R:14361790-14361910 84 1.79e-04 TTTCGAATGC CTCTCGTT TTCCCCTTTG chr3R:30281564-30281684 78 1.79e-04 TGTTTATCGC CTCTCGTT TTTTTGTATT chr2R:21713304-21713424 13 1.79e-04 CTCTCATCTT CTCTCGTT TTTTTCGTTG chr3R:30280464-30280584 112 1.79e-04 CAGATTGATA CTCTCGTT C chr3R:7967898-7968018 43 1.79e-04 CTGAGCGATT CTCTCTTG AAGTTCGCGT chr2L:3787087-3787207 7 1.79e-04 GAGTTC CTCTCTTG TGAACTCAGT chrX:8063289-8063409 24 1.98e-04 TTATCGAAAG CTCTCTTC CTTCCGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12693415-12693535 8.9e-06 68_[+1]_44 chr3L:17590790-17590910 8.9e-06 110_[+1]_2 chr3L:1546628-1546748 8.9e-06 70_[+1]_42 chr3L:18016665-18016785 8.9e-06 101_[+1]_11 chr2L:21250705-21250825 8.9e-06 96_[+1]_16 chr3R:26980357-26980477 8.9e-06 85_[+1]_27 chrX:15811749-15811869 8.9e-06 103_[+1]_9 chr3R:14286387-14286507 8.9e-06 83_[+1]_29 chr3L:19171913-19172033 8.9e-06 7_[+1]_105 chr3L:22851867-22851987 2.1e-05 73_[+1]_39 chr3R:31713576-31713696 2.1e-05 70_[+1]_42 chrX:7299849-7299969 2.1e-05 18_[+1]_94 chr3L:17576528-17576648 2.1e-05 63_[+1]_49 chr3R:29215068-29215188 2.1e-05 46_[+1]_66 chr3R:19165720-19165840 2.1e-05 97_[+1]_15 chr2L:2886695-2886815 2.1e-05 68_[+1]_44 chr2R:23815977-23816097 2.1e-05 80_[+1]_32 chr2R:12705064-12705184 3.4e-05 4_[+1]_108 chrX:2642531-2642651 3.4e-05 94_[+1]_18 chr2L:7926477-7926597 3.4e-05 7_[+1]_105 chr2L:21623698-21623818 3.4e-05 14_[+1]_98 chr3L:2490036-2490156 3.4e-05 34_[+1]_78 chr2R:6132095-6132215 4e-05 69_[+1]_43 chr2L:6324524-6324644 4e-05 33_[+1]_79 chr2R:23659104-23659224 4e-05 79_[+1]_33 chrX:6981715-6981835 4e-05 40_[+1]_72 chr3R:22781594-22781714 5.7e-05 94_[+1]_18 chr2R:24964266-24964386 5.7e-05 111_[+1]_1 chr3L:17607098-17607218 5.7e-05 14_[+1]_98 chr2R:13042212-13042332 5.7e-05 100_[+1]_12 chr2R:6613088-6613208 5.7e-05 13_[+1]_99 chr3L:14756531-14756651 7.5e-05 38_[+1]_74 chr3L:18800436-18800556 7.5e-05 112_[+1] chr3R:13051453-13051573 7.5e-05 34_[+1]_78 chr3R:20782733-20782853 7.5e-05 38_[+1]_74 chr3L:14757903-14758023 7.9e-05 28_[+1]_84 chr3L:19897467-19897587 9.7e-05 108_[+1]_4 chr2R:6871938-6872058 9.7e-05 83_[+1]_29 chr3L:17570593-17570713 9.7e-05 20_[+1]_92 chr3R:21616366-21616486 0.00013 59_[+1]_53 chr3R:20765979-20766099 0.00013 91_[+1]_21 chr2L:13290646-13290766 0.00013 12_[+1]_100 chr3L:17962336-17962456 0.00013 25_[+1]_87 chr2L:9175340-9175460 0.00014 105_[+1]_7 chr3L:12791141-12791261 0.00014 2_[+1]_110 chr3R:14361790-14361910 0.00018 83_[+1]_29 chr3R:30281564-30281684 0.00018 77_[+1]_35 chr2R:21713304-21713424 0.00018 12_[+1]_100 chr3R:30280464-30280584 0.00018 111_[+1]_1 chr3R:7967898-7968018 0.00018 42_[+1]_70 chr2L:3787087-3787207 0.00018 6_[+1]_106 chrX:8063289-8063409 0.0002 23_[+1]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKCTCTYT width=8 seqs=52 chr3L:12693415-12693535 ( 69) CGCTCTCT 1 chr3L:17590790-17590910 ( 111) CGCTCTCT 1 chr3L:1546628-1546748 ( 71) CGCTCTCT 1 chr3L:18016665-18016785 ( 102) CGCTCTCT 1 chr2L:21250705-21250825 ( 97) CGCTCTCT 1 chr3R:26980357-26980477 ( 86) CGCTCTCT 1 chrX:15811749-15811869 ( 104) CGCTCTCT 1 chr3R:14286387-14286507 ( 84) CGCTCTCT 1 chr3L:19171913-19172033 ( 8) CGCTCTCT 1 chr3L:22851867-22851987 ( 74) CGCTCTCG 1 chr3R:31713576-31713696 ( 71) CGCTCTCG 1 chrX:7299849-7299969 ( 19) CGCTCTCG 1 chr3L:17576528-17576648 ( 64) CGCTCGCT 1 chr3R:29215068-29215188 ( 47) CGCTCGCT 1 chr3R:19165720-19165840 ( 98) CGCTCGCT 1 chr2L:2886695-2886815 ( 69) CGCTCTCG 1 chr2R:23815977-23816097 ( 81) CGCTCTCG 1 chr2R:12705064-12705184 ( 5) CTCTCTCT 1 chrX:2642531-2642651 ( 95) CTCTCTCT 1 chr2L:7926477-7926597 ( 8) CTCTCTCT 1 chr2L:21623698-21623818 ( 15) CTCTCTCT 1 chr3L:2490036-2490156 ( 35) CTCTCTCT 1 chr2R:6132095-6132215 ( 70) CGCTCTCC 1 chr2L:6324524-6324644 ( 34) CGCTCTCC 1 chr2R:23659104-23659224 ( 80) CGCTCTCC 1 chrX:6981715-6981835 ( 41) CGCTCTCC 1 chr3R:22781594-22781714 ( 95) CGCTCGCG 1 chr2R:24964266-24964386 ( 112) CGCTCGCG 1 chr3L:17607098-17607218 ( 15) CGCTCTTT 1 chr2R:13042212-13042332 ( 101) CGCTCTTT 1 chr2R:6613088-6613208 ( 14) CGCTCTTT 1 chr3L:14756531-14756651 ( 39) CTCTCTCG 1 chr3L:18800436-18800556 ( 113) CTCTCGCT 1 chr3R:13051453-13051573 ( 35) CTCTCTCG 1 chr3R:20782733-20782853 ( 39) CTCTCGCT 1 chr3L:14757903-14758023 ( 29) CGCTCGCC 1 chr3L:19897467-19897587 ( 109) CGCTCTTG 1 chr2R:6871938-6872058 ( 84) CGCTCGTT 1 chr3L:17570593-17570713 ( 21) CGCTCGTT 1 chr3R:21616366-21616486 ( 60) CTCTCTTT 1 chr3R:20765979-20766099 ( 92) CTCTCGCG 1 chr2L:13290646-13290766 ( 13) CTCTCTTT 1 chr3L:17962336-17962456 ( 26) CTCTCTTT 1 chr2L:9175340-9175460 ( 106) CGCTCTTC 1 chr3L:12791141-12791261 ( 3) CGCTCTTC 1 chr3R:14361790-14361910 ( 84) CTCTCGTT 1 chr3R:30281564-30281684 ( 78) CTCTCGTT 1 chr2R:21713304-21713424 ( 13) CTCTCGTT 1 chr3R:30280464-30280584 ( 112) CTCTCGTT 1 chr3R:7967898-7968018 ( 43) CTCTCTTG 1 chr2L:3787087-3787207 ( 7) CTCTCTTG 1 chrX:8063289-8063409 ( 24) CTCTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2004 E= 1.2e-018 -1234 232 -1234 -1234 -1234 -1234 158 36 -1234 232 -1234 -1234 -1234 -1234 -1234 173 -1234 232 -1234 -1234 -1234 -1234 49 124 -1234 171 -1234 20 -1234 -38 28 99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.2e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.615385 0.384615 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.288462 0.711538 0.000000 0.653846 0.000000 0.346154 0.000000 0.153846 0.250000 0.596154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTYT MEME-1 regular expression -------------------------------------------------------------------------------- C[GT]CTC[TG][CT][TG] -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMAAAA MEME-2 width = 8 sites = 84 llr = 661 E-value = 7.6e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa8489aa pos.-specific C :::6:1:: probability G ::2:3::: matrix T :::::::: bits 2.3 2.1 1.9 * * 1.6 ** ** Relative 1.4 ** *** Entropy 1.2 ******** (11.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9186306-9186426 40 3.80e-05 ACTGAACCGA AAACAAAA GGAAAACTTT chrX:3761748-3761868 26 3.80e-05 CAATTGACTT AAACAAAA AGGCAACTGA chr3L:16004643-16004763 80 3.80e-05 ATAGCGCAAA AAACAAAA CGTGTGATTA chr3L:18771441-18771561 3 3.80e-05 ag aaacaaaa aaCTCGTCTT chr3R:24549894-24550014 46 3.80e-05 agtttgagca aaacaaaa aaataaaaat chr2R:11637476-11637596 33 3.80e-05 TCAACCCGAC AAACAAAA TAACGTAAAA chr3L:6218719-6218839 112 3.80e-05 AATCGGAACA AAACAAAA C chr3R:26980357-26980477 9 3.80e-05 CGAAATCA AAACAAAA CTGAAGAAGC chr3L:16195515-16195635 108 3.80e-05 aaaaaaaaaa aaacaaaa ataaa chr3R:17119176-17119296 8 3.80e-05 GAGCGGC AAACAAAA AATAAAACAA chr3R:20765979-20766099 30 3.80e-05 aataatacaa aaacaaaa aATATATAGC chr2R:11175611-11175731 4 3.80e-05 aca aaacaaaa acacaaacga chr3L:9468042-9468162 62 3.80e-05 aaaaagaaac aaacaaaa aaCGAACACA chr2L:12493683-12493803 50 3.80e-05 AATAGGCGAG AAACAAAA TTTACACACA chr2L:10794160-10794280 67 3.80e-05 caagacaaga aaacaaaa GTGGAGCAAC chr2R:10473628-10473748 95 3.80e-05 TGTGATTCAT AAACAAAA AAACATCTTG chr3L:11788941-11789061 58 3.80e-05 ATATAAAAAC AAACAAAA GCGGCGGCAT chr3R:21977237-21977357 68 3.80e-05 agagcaacaa aaacaaaa AGCGGAAACA chr3R:7793874-7793994 36 3.80e-05 GTAACAAAAC AAACAAAA AAGAGAACCG chr2R:17108683-17108803 22 3.80e-05 TCATGTTTAC AAACAAAA TGCTCGACGC chr2L:5289422-5289542 52 3.80e-05 GACGCGATCA AAACAAAA AGCCAAAAAA chr2R:16154115-16154235 10 3.80e-05 taataaacg aaacaaaa aacagaaaaa chr2R:16161160-16161280 3 3.80e-05 AA AAACAAAA TACACGGCAG chr3L:8518823-8518943 19 3.80e-05 GTTAAAACAC AAACAAAA AACTTTATAT chr2R:23815977-23816097 52 3.80e-05 GTAAAAACAA AAACAAAA CGGCGATTTT chrX:1271258-1271378 17 3.80e-05 ACGaaacgaa aaacaaaa ttaacaaaaa chr2R:17869088-17869208 25 6.44e-05 TTGAAATGCA AAACGAAA TTACATGCAA chr2R:24964266-24964386 97 6.44e-05 GTGGTGGTGC AAACGAAA GAGAAAACGC chr3R:21606706-21606826 107 6.44e-05 GACAGAGAGG AAACGAAA GAGAGA chr2L:12545822-12545942 79 6.44e-05 gGAATTAAAT AAACGAAA AAGCGTGCAT chr3L:342968-343088 76 6.44e-05 GAAAGCTTTC AAACGAAA GCGGATACTT chr3R:14027081-14027201 40 6.44e-05 AAACAACAAA AAACGAAA ACAATCAATT chr3L:17502332-17502452 27 1.20e-04 TTAACGATTT AAAAAAAA GCATATGACA chr2R:19616297-19616417 79 1.20e-04 aataaataaa aaaaaaaa tgcgaaaaaa chr3L:12850053-12850173 18 1.20e-04 AGGTATGTAT AAAAAAAA ACTAATTATA chr2R:11614382-11614502 16 1.20e-04 AGGGCGGGCt aaaaaaaa ataaaataaa chrX:13988961-13989081 19 1.20e-04 caTAGAATGC AAAAAAAA AAAAAAGGAG chrX:8063289-8063409 68 1.20e-04 GAGGCCAACA AAAAAAAA CAACAAAAGC chr3L:20730299-20730419 111 1.20e-04 AAAGATCAAC AAAAAAAA GA chr3R:16264120-16264240 101 1.20e-04 TAAAAAAATA AAAAAAAA TTAGCTGTGG chr3L:13494458-13494578 43 1.20e-04 aaaaaaaaag aaaaaaaa GCCCCCAACT chr2L:72388-72508 90 1.20e-04 GTATTCAGCC AAAAAAAA TCTCGTACAT chr3L:9675545-9675665 70 1.20e-04 aaacaaatac aaaaaaaa GAGCGAGCGC chr2R:19620120-19620240 49 1.20e-04 ataacaaaaa aaaaaaaa acaaTCATTT chr2L:8704970-8705090 63 1.20e-04 TAAAAAAGGG AAAAAAAA ACAGGTAAAA chr2R:20996696-20996816 62 1.20e-04 CGAAATAATA AAAAAAAA ACACGCACGC chr2R:22737182-22737302 42 1.47e-04 TCTGGCTATA AAGCAAAA CTGGTTTCGT chr2L:18563232-18563352 49 1.47e-04 AAAATAAACA AAGCAAAA TGCTCAATTC chr2R:12985813-12985933 11 1.47e-04 AAGGCATGCA AAGCAAAA CTCCAAAata chr3R:10084115-10084235 90 1.47e-04 AATTCGCAAA AAGCAAAA GTGAGTTGCA chr3L:5277162-5277282 113 1.47e-04 CAAGTGAGCA AAGCAAAA chr2L:18564077-18564197 51 1.47e-04 ACAAAAACAG AAGCAAAA TTCGCCAAAT chr3R:23888722-23888842 60 2.11e-04 TCGGCTAGAG AAAAGAAA TCCAAATGAA chr2R:13958038-13958158 36 2.11e-04 AGTTTTGCAC AAACACAA CTTATTTGCT chr2R:22242998-22243118 47 2.11e-04 CACAAAAAAT AAAAGAAA ACGCGCAGCC chr2L:9203501-9203621 86 2.11e-04 CTGTGGGCAA AAACACAA AACTGCGACG chrX:15834682-15834802 97 2.11e-04 agagaATTTG AAAAGAAA AGAGGCAGCA chr3R:9954796-9954916 66 2.11e-04 TTGCAATGAC AAAAGAAA AATATCGCAG chr2L:2886695-2886815 19 2.11e-04 CGCCACGCCG AAAAGAAA TTAATTTTGA chr3L:7801431-7801551 104 2.11e-04 ACAGAACATA AAAAGAAA TAGAACAAA chr2R:19415004-19415124 50 2.11e-04 TTAAGGTTTC AAAAGAAA CATTTGGTTT chr2L:6644754-6644874 44 2.11e-04 AAAGCAATAA AAAAGAAA CAACGAAAAA chrX:15303705-15303825 108 2.11e-04 GCCGAAATAC AAACACAA AAATG chrX:1276530-1276650 101 2.30e-04 GAGCGGCGAA AAGCGAAA GCTTCGTGGC chr2R:12198910-12199030 66 2.30e-04 TCAAAATGTA AAGCGAAA ATCTTTGCCA chr2R:7063815-7063935 50 2.69e-04 CATGCGACGT AAGAAAAA TAAATGGGGG chr3L:14756531-14756651 68 2.69e-04 ACTTTGCAAC AAGAAAAA GCTGATAAGC chr3L:20827304-20827424 71 2.69e-04 AGATATATTG AAGAAAAA GTATAATGAA chr3L:17992370-17992490 70 2.87e-04 CTGATCCTTA AAACGCAA TAATCATCGT chr2L:21237826-21237946 100 2.87e-04 AAGGTGAGGA AAACGCAA CAAGAGCGCC chr2R:6871938-6872058 4 3.25e-04 AGA AAAAACAA ATACCATAAA chr3L:7993754-7993874 41 3.25e-04 AAGAAAAATA AAAAACAA GCAGCTACAA chrX:15320492-15320612 73 3.25e-04 CAAAACAGCC AAAAACAA ATAAAAGCAT chr2R:17458381-17458501 36 3.51e-04 CGTACCGTAC AAACAAAC AGACGTGCGG chr3L:10738396-10738516 14 3.51e-04 aagcaaaggc aaacaaac acagcacaaa chr3R:9675127-9675247 26 3.51e-04 CAAACATTGT AAACAAAC TCCATGTTAC chr3L:7530826-7530946 70 3.51e-04 AAATGAAAAC AAACAAAC GAGGCAGACA chr2R:10238352-10238472 76 3.96e-04 agagtaaaga aagcacaa agagagagaa chr2R:22644726-22644846 11 3.96e-04 ATCAACAACA AAGAGAAA AAACAGACAG chr2R:10598392-10598512 104 4.22e-04 TTTGTTTCTC ACACAAAA TGCTTCCGC chr3L:10663238-10663358 30 4.22e-04 AGTATTTCGA ACACAAAA CTAACAGCAT chr2L:1668639-1668759 5 4.48e-04 CGAA AAAAGCAA GCAATAAACA chr3L:22823429-22823549 53 4.48e-04 CGGAGAGCAA AAAAGCAA ATAAAAATTG chr3L:748566-748686 95 5.99e-04 TTTCCCCTTT ACAAAAAA CCGATCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9186306-9186426 3.8e-05 39_[+2]_73 chrX:3761748-3761868 3.8e-05 25_[+2]_87 chr3L:16004643-16004763 3.8e-05 79_[+2]_33 chr3L:18771441-18771561 3.8e-05 2_[+2]_110 chr3R:24549894-24550014 3.8e-05 45_[+2]_67 chr2R:11637476-11637596 3.8e-05 32_[+2]_80 chr3L:6218719-6218839 3.8e-05 111_[+2]_1 chr3R:26980357-26980477 3.8e-05 8_[+2]_104 chr3L:16195515-16195635 3.8e-05 107_[+2]_5 chr3R:17119176-17119296 3.8e-05 7_[+2]_105 chr3R:20765979-20766099 3.8e-05 29_[+2]_83 chr2R:11175611-11175731 3.8e-05 3_[+2]_109 chr3L:9468042-9468162 3.8e-05 61_[+2]_51 chr2L:12493683-12493803 3.8e-05 49_[+2]_63 chr2L:10794160-10794280 3.8e-05 66_[+2]_46 chr2R:10473628-10473748 3.8e-05 94_[+2]_18 chr3L:11788941-11789061 3.8e-05 57_[+2]_55 chr3R:21977237-21977357 3.8e-05 67_[+2]_45 chr3R:7793874-7793994 3.8e-05 35_[+2]_77 chr2R:17108683-17108803 3.8e-05 21_[+2]_91 chr2L:5289422-5289542 3.8e-05 51_[+2]_61 chr2R:16154115-16154235 3.8e-05 9_[+2]_103 chr2R:16161160-16161280 3.8e-05 2_[+2]_110 chr3L:8518823-8518943 3.8e-05 18_[+2]_94 chr2R:23815977-23816097 3.8e-05 51_[+2]_61 chrX:1271258-1271378 3.8e-05 16_[+2]_96 chr2R:17869088-17869208 6.4e-05 24_[+2]_88 chr2R:24964266-24964386 6.4e-05 96_[+2]_16 chr3R:21606706-21606826 6.4e-05 106_[+2]_6 chr2L:12545822-12545942 6.4e-05 78_[+2]_34 chr3L:342968-343088 6.4e-05 75_[+2]_37 chr3R:14027081-14027201 6.4e-05 39_[+2]_73 chr3L:17502332-17502452 0.00012 26_[+2]_86 chr2R:19616297-19616417 0.00012 78_[+2]_34 chr3L:12850053-12850173 0.00012 17_[+2]_95 chr2R:11614382-11614502 0.00012 15_[+2]_97 chrX:13988961-13989081 0.00012 18_[+2]_94 chrX:8063289-8063409 0.00012 67_[+2]_45 chr3L:20730299-20730419 0.00012 110_[+2]_2 chr3R:16264120-16264240 0.00012 100_[+2]_12 chr3L:13494458-13494578 0.00012 42_[+2]_70 chr2L:72388-72508 0.00012 89_[+2]_23 chr3L:9675545-9675665 0.00012 69_[+2]_43 chr2R:19620120-19620240 0.00012 48_[+2]_64 chr2L:8704970-8705090 0.00012 62_[+2]_50 chr2R:20996696-20996816 0.00012 61_[+2]_51 chr2R:22737182-22737302 0.00015 41_[+2]_71 chr2L:18563232-18563352 0.00015 48_[+2]_64 chr2R:12985813-12985933 0.00015 10_[+2]_102 chr3R:10084115-10084235 0.00015 89_[+2]_23 chr3L:5277162-5277282 0.00015 112_[+2] chr2L:18564077-18564197 0.00015 50_[+2]_62 chr3R:23888722-23888842 0.00021 59_[+2]_53 chr2R:13958038-13958158 0.00021 35_[+2]_77 chr2R:22242998-22243118 0.00021 46_[+2]_66 chr2L:9203501-9203621 0.00021 85_[+2]_27 chrX:15834682-15834802 0.00021 96_[+2]_16 chr3R:9954796-9954916 0.00021 65_[+2]_47 chr2L:2886695-2886815 0.00021 18_[+2]_94 chr3L:7801431-7801551 0.00021 103_[+2]_9 chr2R:19415004-19415124 0.00021 49_[+2]_63 chr2L:6644754-6644874 0.00021 43_[+2]_69 chrX:15303705-15303825 0.00021 107_[+2]_5 chrX:1276530-1276650 0.00023 100_[+2]_12 chr2R:12198910-12199030 0.00023 65_[+2]_47 chr2R:7063815-7063935 0.00027 49_[+2]_63 chr3L:14756531-14756651 0.00027 67_[+2]_45 chr3L:20827304-20827424 0.00027 70_[+2]_42 chr3L:17992370-17992490 0.00029 69_[+2]_43 chr2L:21237826-21237946 0.00029 99_[+2]_13 chr2R:6871938-6872058 0.00032 3_[+2]_109 chr3L:7993754-7993874 0.00032 40_[+2]_72 chrX:15320492-15320612 0.00032 72_[+2]_40 chr2R:17458381-17458501 0.00035 35_[+2]_77 chr3L:10738396-10738516 0.00035 13_[+2]_99 chr3R:9675127-9675247 0.00035 25_[+2]_87 chr3L:7530826-7530946 0.00035 69_[+2]_43 chr2R:10238352-10238472 0.0004 75_[+2]_37 chr2R:22644726-22644846 0.0004 10_[+2]_102 chr2R:10598392-10598512 0.00042 103_[+2]_9 chr3L:10663238-10663358 0.00042 29_[+2]_83 chr2L:1668639-1668759 0.00045 4_[+2]_108 chr3L:22823429-22823549 0.00045 52_[+2]_60 chr3L:748566-748686 0.0006 94_[+2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMAAAA width=8 seqs=84 chr2R:9186306-9186426 ( 40) AAACAAAA 1 chrX:3761748-3761868 ( 26) AAACAAAA 1 chr3L:16004643-16004763 ( 80) AAACAAAA 1 chr3L:18771441-18771561 ( 3) AAACAAAA 1 chr3R:24549894-24550014 ( 46) AAACAAAA 1 chr2R:11637476-11637596 ( 33) AAACAAAA 1 chr3L:6218719-6218839 ( 112) AAACAAAA 1 chr3R:26980357-26980477 ( 9) AAACAAAA 1 chr3L:16195515-16195635 ( 108) AAACAAAA 1 chr3R:17119176-17119296 ( 8) AAACAAAA 1 chr3R:20765979-20766099 ( 30) AAACAAAA 1 chr2R:11175611-11175731 ( 4) AAACAAAA 1 chr3L:9468042-9468162 ( 62) AAACAAAA 1 chr2L:12493683-12493803 ( 50) AAACAAAA 1 chr2L:10794160-10794280 ( 67) AAACAAAA 1 chr2R:10473628-10473748 ( 95) AAACAAAA 1 chr3L:11788941-11789061 ( 58) AAACAAAA 1 chr3R:21977237-21977357 ( 68) AAACAAAA 1 chr3R:7793874-7793994 ( 36) AAACAAAA 1 chr2R:17108683-17108803 ( 22) AAACAAAA 1 chr2L:5289422-5289542 ( 52) AAACAAAA 1 chr2R:16154115-16154235 ( 10) AAACAAAA 1 chr2R:16161160-16161280 ( 3) AAACAAAA 1 chr3L:8518823-8518943 ( 19) AAACAAAA 1 chr2R:23815977-23816097 ( 52) AAACAAAA 1 chrX:1271258-1271378 ( 17) AAACAAAA 1 chr2R:17869088-17869208 ( 25) AAACGAAA 1 chr2R:24964266-24964386 ( 97) AAACGAAA 1 chr3R:21606706-21606826 ( 107) AAACGAAA 1 chr2L:12545822-12545942 ( 79) AAACGAAA 1 chr3L:342968-343088 ( 76) AAACGAAA 1 chr3R:14027081-14027201 ( 40) AAACGAAA 1 chr3L:17502332-17502452 ( 27) AAAAAAAA 1 chr2R:19616297-19616417 ( 79) AAAAAAAA 1 chr3L:12850053-12850173 ( 18) AAAAAAAA 1 chr2R:11614382-11614502 ( 16) AAAAAAAA 1 chrX:13988961-13989081 ( 19) AAAAAAAA 1 chrX:8063289-8063409 ( 68) AAAAAAAA 1 chr3L:20730299-20730419 ( 111) AAAAAAAA 1 chr3R:16264120-16264240 ( 101) AAAAAAAA 1 chr3L:13494458-13494578 ( 43) AAAAAAAA 1 chr2L:72388-72508 ( 90) AAAAAAAA 1 chr3L:9675545-9675665 ( 70) AAAAAAAA 1 chr2R:19620120-19620240 ( 49) AAAAAAAA 1 chr2L:8704970-8705090 ( 63) AAAAAAAA 1 chr2R:20996696-20996816 ( 62) AAAAAAAA 1 chr2R:22737182-22737302 ( 42) AAGCAAAA 1 chr2L:18563232-18563352 ( 49) AAGCAAAA 1 chr2R:12985813-12985933 ( 11) AAGCAAAA 1 chr3R:10084115-10084235 ( 90) AAGCAAAA 1 chr3L:5277162-5277282 ( 113) AAGCAAAA 1 chr2L:18564077-18564197 ( 51) AAGCAAAA 1 chr3R:23888722-23888842 ( 60) AAAAGAAA 1 chr2R:13958038-13958158 ( 36) AAACACAA 1 chr2R:22242998-22243118 ( 47) AAAAGAAA 1 chr2L:9203501-9203621 ( 86) AAACACAA 1 chrX:15834682-15834802 ( 97) AAAAGAAA 1 chr3R:9954796-9954916 ( 66) AAAAGAAA 1 chr2L:2886695-2886815 ( 19) AAAAGAAA 1 chr3L:7801431-7801551 ( 104) AAAAGAAA 1 chr2R:19415004-19415124 ( 50) AAAAGAAA 1 chr2L:6644754-6644874 ( 44) AAAAGAAA 1 chrX:15303705-15303825 ( 108) AAACACAA 1 chrX:1276530-1276650 ( 101) AAGCGAAA 1 chr2R:12198910-12199030 ( 66) AAGCGAAA 1 chr2R:7063815-7063935 ( 50) AAGAAAAA 1 chr3L:14756531-14756651 ( 68) AAGAAAAA 1 chr3L:20827304-20827424 ( 71) AAGAAAAA 1 chr3L:17992370-17992490 ( 70) AAACGCAA 1 chr2L:21237826-21237946 ( 100) AAACGCAA 1 chr2R:6871938-6872058 ( 4) AAAAACAA 1 chr3L:7993754-7993874 ( 41) AAAAACAA 1 chrX:15320492-15320612 ( 73) AAAAACAA 1 chr2R:17458381-17458501 ( 36) AAACAAAC 1 chr3L:10738396-10738516 ( 14) AAACAAAC 1 chr3R:9675127-9675247 ( 26) AAACAAAC 1 chr3L:7530826-7530946 ( 70) AAACAAAC 1 chr2R:10238352-10238472 ( 76) AAGCACAA 1 chr2R:22644726-22644846 ( 11) AAGAGAAA 1 chr2R:10598392-10598512 ( 104) ACACAAAA 1 chr3L:10663238-10663358 ( 30) ACACAAAA 1 chr2L:1668639-1668759 ( 5) AAAAGCAA 1 chr3L:22823429-22823549 ( 53) AAAAGCAA 1 chr3L:748566-748686 ( 95) ACAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 7.6e-026 177 -1304 -1304 -1304 171 -249 -1304 -1304 152 -1304 -41 -1304 37 163 -1304 -1304 135 -1304 28 -1304 156 -61 -1304 -1304 177 -1304 -1304 -1304 170 -207 -1304 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 7.6e-026 1.000000 0.000000 0.000000 0.000000 0.964286 0.035714 0.000000 0.000000 0.845238 0.000000 0.154762 0.000000 0.380952 0.619048 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.869048 0.130952 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAA[CA][AG]AAA -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGMG MEME-3 width = 8 sites = 49 llr = 428 E-value = 2.5e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a28:9:4: pos.-specific C :12:1:61 probability G :7:a:a:9 matrix T :::::::: bits 2.3 * * 2.1 * * 1.9 * * * * 1.6 * * * * Relative 1.4 * * * * Entropy 1.2 * ****** (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGCG consensus AC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12693415-12693535 8 8.98e-06 AGAGCAA AGAGAGCG CACGCACACC chr2R:10238352-10238472 42 8.98e-06 agcgaagaaa agagagcg agagaggtgc chr3R:9928782-9928902 52 8.98e-06 GCGAAAATTG AGAGAGCG AGCCGAGTGC chr3L:18061850-18061970 109 8.98e-06 GCTCGGAGAG AGAGAGCG ACTG chr3L:14038310-14038430 108 8.98e-06 agagagagag agagagCG CGCAA chr2L:13290646-13290766 79 8.98e-06 ATTTCGACGA AGAGAGCG AAACGGATTC chr2R:12985813-12985933 91 8.98e-06 TTGTagaggg agagagcg ccagagcaga chr3L:2490036-2490156 97 8.98e-06 CGAGCGAGCA AGAGAGCG TGGGGGAGAG chr2L:5237410-5237530 20 2.22e-05 TCTCGCAAAG AGAGAGAG AGTAGACGGG chr3R:9237024-9237144 110 2.22e-05 ACAGAGTGCG AGAGAGAG CAA chr3L:20730299-20730419 7 2.22e-05 GCTTTG AGAGAGAG AGAAAGCTTC chrX:15834682-15834802 83 2.22e-05 gagcgaatca agagagag aATTTGAAAA chr3L:21026335-21026455 53 2.22e-05 gcagagagtg agagagag gagagaggga chr2R:10568699-10568819 44 2.22e-05 TTTTATGTGC AGAGAGAG TTCTgccgcc chr3L:5277162-5277282 58 2.22e-05 aagagagtag agagagag agaacaaaga chr2L:12545822-12545942 60 2.22e-05 agatggagag agagagag agGAATTAAA chr2R:22737182-22737302 79 2.83e-05 GCCAAAACGA AGCGAGCG AAAAGGAAAA chr3L:2573059-2573179 110 2.83e-05 GCCAGAGATA AGCGAGCG ATG chrX:15811749-15811869 11 2.83e-05 CCGTTGCGAG AGCGAGCG CGAGAGCGCA chr3L:9675545-9675665 79 2.83e-05 caaaaaaaaG AGCGAGCG CGACGTCAAT chr3L:9381781-9381901 62 2.83e-05 ACACTACGAT AGCGAGCG GTTGTATAAA chr3L:22824866-22824986 66 3.44e-05 GTGCGGGAGC AGAGCGCG TATTTAGAAT chr2L:9237831-9237951 1 3.44e-05 . AGAGCGCG AAGAAGCTTC chrX:13988961-13989081 108 4.73e-05 CCTCGCTCCG AAAGAGCG AAAAG chrX:1276530-1276650 88 4.73e-05 GCGACCGCCG AAAGAGCG GCGAAAAGCG chr2R:9186306-9186426 78 5.62e-05 CAAATCCGAA AGCGAGAG CTTTGCGAAA chr3R:26980357-26980477 108 5.62e-05 AGCGAATGAG AGCGAGAG AAAGA chr3L:748566-748686 18 5.62e-05 AAAATTATTG AGCGAGAG TTACTGTTCG chrX:7299849-7299969 58 6.50e-05 TTTGGAGCAG ACAGAGCG ACGTCAGCGA chr3R:5570932-5571052 101 6.50e-05 ATGCCGGCTA ACAGAGCG TTGCGCGGAC chr3L:8518823-8518943 39 6.50e-05 CTTTATATAA ACAGAGCG CCGTCGAAGA chr3R:4810132-4810252 76 8.27e-05 AACAAAGCGC AGAGCGAG TTCCGAGTTG chr3R:26535718-26535838 49 8.27e-05 TGAGCTTTGA AGAGAGCC GGCAACTTTT chr3R:11156892-11157012 12 8.27e-05 AATATATGCG AGAGAGCC TCTCCACTTT chr2R:16161160-16161280 86 8.27e-05 aataaaaagc agagagcc gaaaatcgaa chr3R:18917004-18917124 90 1.02e-04 GCACACATTC AAAGAGAG CTTACTAATA chr2L:222056-222176 15 1.02e-04 AATCAGCCAG AAAGAGAG ACTCAGAAGA chrX:8897995-8898115 94 1.02e-04 tgtgtgtgtg aaagagag ccgcgtgcct chr3R:19165720-19165840 46 1.02e-04 GCCCCCAACA AAAGAGAG TGAGAGAGCA chr2L:21753725-21753845 97 1.02e-04 GATCTAAAAT AAAGAGAG AAAAATGTTC chr3R:21977237-21977357 54 1.02e-04 aacaaaaaaa aaagagag caacaaaaac chr2R:21056910-21057030 12 1.06e-04 CACACCGCCA AGCGCGCG CATTTGTGTG chr3R:21606706-21606826 98 1.27e-04 TGGCCGTGCG ACAGAGAG GAAACGAAAG chr2R:14174856-14174976 23 1.27e-04 ATACGTGGAA AACGAGCG ACAGCAACTG chr2R:11175611-11175731 46 1.27e-04 AGGGGGAAAA ACAGAGAG CTGAAATAAA chr3L:17607098-17607218 1 1.33e-04 . ACCGAGCG AGCTTTCGCT chr2L:72388-72508 109 1.55e-04 CTCGTACATT AAAGCGCG CTGA chr3R:31713576-31713696 16 2.01e-04 GCATAAGGGC AGAGCGCC AACGCAGCGG chr2L:21237826-21237946 110 2.01e-04 AAACGCAACA AGAGCGCC GCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12693415-12693535 9e-06 7_[+3]_105 chr2R:10238352-10238472 9e-06 41_[+3]_71 chr3R:9928782-9928902 9e-06 51_[+3]_61 chr3L:18061850-18061970 9e-06 108_[+3]_4 chr3L:14038310-14038430 9e-06 107_[+3]_5 chr2L:13290646-13290766 9e-06 78_[+3]_34 chr2R:12985813-12985933 9e-06 90_[+3]_22 chr3L:2490036-2490156 9e-06 96_[+3]_16 chr2L:5237410-5237530 2.2e-05 19_[+3]_93 chr3R:9237024-9237144 2.2e-05 109_[+3]_3 chr3L:20730299-20730419 2.2e-05 6_[+3]_106 chrX:15834682-15834802 2.2e-05 82_[+3]_30 chr3L:21026335-21026455 2.2e-05 52_[+3]_60 chr2R:10568699-10568819 2.2e-05 43_[+3]_69 chr3L:5277162-5277282 2.2e-05 57_[+3]_55 chr2L:12545822-12545942 2.2e-05 59_[+3]_53 chr2R:22737182-22737302 2.8e-05 78_[+3]_34 chr3L:2573059-2573179 2.8e-05 109_[+3]_3 chrX:15811749-15811869 2.8e-05 10_[+3]_102 chr3L:9675545-9675665 2.8e-05 78_[+3]_34 chr3L:9381781-9381901 2.8e-05 61_[+3]_51 chr3L:22824866-22824986 3.4e-05 65_[+3]_47 chr2L:9237831-9237951 3.4e-05 [+3]_112 chrX:13988961-13989081 4.7e-05 107_[+3]_5 chrX:1276530-1276650 4.7e-05 87_[+3]_25 chr2R:9186306-9186426 5.6e-05 77_[+3]_35 chr3R:26980357-26980477 5.6e-05 107_[+3]_5 chr3L:748566-748686 5.6e-05 17_[+3]_95 chrX:7299849-7299969 6.5e-05 57_[+3]_55 chr3R:5570932-5571052 6.5e-05 100_[+3]_12 chr3L:8518823-8518943 6.5e-05 38_[+3]_74 chr3R:4810132-4810252 8.3e-05 75_[+3]_37 chr3R:26535718-26535838 8.3e-05 48_[+3]_64 chr3R:11156892-11157012 8.3e-05 11_[+3]_101 chr2R:16161160-16161280 8.3e-05 85_[+3]_27 chr3R:18917004-18917124 0.0001 89_[+3]_23 chr2L:222056-222176 0.0001 14_[+3]_98 chrX:8897995-8898115 0.0001 93_[+3]_19 chr3R:19165720-19165840 0.0001 45_[+3]_67 chr2L:21753725-21753845 0.0001 96_[+3]_16 chr3R:21977237-21977357 0.0001 53_[+3]_59 chr2R:21056910-21057030 0.00011 11_[+3]_101 chr3R:21606706-21606826 0.00013 97_[+3]_15 chr2R:14174856-14174976 0.00013 22_[+3]_90 chr2R:11175611-11175731 0.00013 45_[+3]_67 chr3L:17607098-17607218 0.00013 [+3]_112 chr2L:72388-72508 0.00016 108_[+3]_4 chr3R:31713576-31713696 0.0002 15_[+3]_97 chr2L:21237826-21237946 0.0002 109_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGMG width=8 seqs=49 chr3L:12693415-12693535 ( 8) AGAGAGCG 1 chr2R:10238352-10238472 ( 42) AGAGAGCG 1 chr3R:9928782-9928902 ( 52) AGAGAGCG 1 chr3L:18061850-18061970 ( 109) AGAGAGCG 1 chr3L:14038310-14038430 ( 108) AGAGAGCG 1 chr2L:13290646-13290766 ( 79) AGAGAGCG 1 chr2R:12985813-12985933 ( 91) AGAGAGCG 1 chr3L:2490036-2490156 ( 97) AGAGAGCG 1 chr2L:5237410-5237530 ( 20) AGAGAGAG 1 chr3R:9237024-9237144 ( 110) AGAGAGAG 1 chr3L:20730299-20730419 ( 7) AGAGAGAG 1 chrX:15834682-15834802 ( 83) AGAGAGAG 1 chr3L:21026335-21026455 ( 53) AGAGAGAG 1 chr2R:10568699-10568819 ( 44) AGAGAGAG 1 chr3L:5277162-5277282 ( 58) AGAGAGAG 1 chr2L:12545822-12545942 ( 60) AGAGAGAG 1 chr2R:22737182-22737302 ( 79) AGCGAGCG 1 chr3L:2573059-2573179 ( 110) AGCGAGCG 1 chrX:15811749-15811869 ( 11) AGCGAGCG 1 chr3L:9675545-9675665 ( 79) AGCGAGCG 1 chr3L:9381781-9381901 ( 62) AGCGAGCG 1 chr3L:22824866-22824986 ( 66) AGAGCGCG 1 chr2L:9237831-9237951 ( 1) AGAGCGCG 1 chrX:13988961-13989081 ( 108) AAAGAGCG 1 chrX:1276530-1276650 ( 88) AAAGAGCG 1 chr2R:9186306-9186426 ( 78) AGCGAGAG 1 chr3R:26980357-26980477 ( 108) AGCGAGAG 1 chr3L:748566-748686 ( 18) AGCGAGAG 1 chrX:7299849-7299969 ( 58) ACAGAGCG 1 chr3R:5570932-5571052 ( 101) ACAGAGCG 1 chr3L:8518823-8518943 ( 39) ACAGAGCG 1 chr3R:4810132-4810252 ( 76) AGAGCGAG 1 chr3R:26535718-26535838 ( 49) AGAGAGCC 1 chr3R:11156892-11157012 ( 12) AGAGAGCC 1 chr2R:16161160-16161280 ( 86) AGAGAGCC 1 chr3R:18917004-18917124 ( 90) AAAGAGAG 1 chr2L:222056-222176 ( 15) AAAGAGAG 1 chrX:8897995-8898115 ( 94) AAAGAGAG 1 chr3R:19165720-19165840 ( 46) AAAGAGAG 1 chr2L:21753725-21753845 ( 97) AAAGAGAG 1 chr3R:21977237-21977357 ( 54) AAAGAGAG 1 chr2R:21056910-21057030 ( 12) AGCGCGCG 1 chr3R:21606706-21606826 ( 98) ACAGAGAG 1 chr2R:14174856-14174976 ( 23) AACGAGCG 1 chr2R:11175611-11175731 ( 46) ACAGAGAG 1 chr3L:17607098-17607218 ( 1) ACCGAGCG 1 chr2L:72388-72508 ( 109) AAAGCGCG 1 chr3R:31713576-31713696 ( 16) AGAGCGCC 1 chr2L:21237826-21237946 ( 110) AGAGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 2.5e-015 177 -1226 -1226 -1226 -53 -71 171 -1226 140 16 -1226 -1226 -1226 -1226 228 -1226 154 -49 -1226 -1226 -1226 -1226 228 -1226 47 156 -1226 -1226 -1226 -97 213 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 2.5e-015 1.000000 0.000000 0.000000 0.000000 0.204082 0.122449 0.673469 0.000000 0.775510 0.224490 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.408163 0.591837 0.000000 0.000000 0.000000 0.102041 0.897959 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGMG MEME-3 regular expression -------------------------------------------------------------------------------- A[GA][AC]GAG[CA]G -------------------------------------------------------------------------------- Time 20.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTKTT MEME-4 width = 8 sites = 108 llr = 778 E-value = 7.1e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::1::1: probability G ::3:14:1 matrix T aa898699 bits 2.3 2.1 1.9 1.6 ** Relative 1.4 ** * Entropy 1.2 ***** ** (10.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21616366-21616486 109 1.10e-04 GGTCAGAGCA TTTTTTTT GTTT chrX:16599952-16600072 78 1.10e-04 TTTTTTGGTT TTTTTTTT TACTTACGTT chr3R:14061512-14061632 92 1.10e-04 TTTTTTCTTC TTTTTTTT TTTTGGCCGA chr2R:10564900-10565020 17 1.10e-04 tttCGCCGCC TTTTTGTT CTTGTTGTAT chr3L:11324605-11324725 39 1.10e-04 TCGTGtggtg tttttttt gtattatttt chr3R:29210815-29210935 28 1.10e-04 ttgttttttg tttttttt tttttttttt chr3L:17907565-17907685 47 1.10e-04 ATCTCATCGT TTTTTTTT TAATGCAGAA chr2R:17869088-17869208 6 1.10e-04 GAAAT TTTTTTTT GTTGAAATGC chr2L:16284544-16284664 12 1.10e-04 TCATTTCGGT TTTTTTTT CGCAAATTTG chr2L:423321-423441 86 1.10e-04 TGTGTACAGT TTTTTTTT TTCGAGTGTG chr2L:6324524-6324644 47 1.10e-04 TCTCCGATTG TTTTTGTT TGCCTTAATT chrX:8897995-8898115 32 1.10e-04 TAAAAACCGT TTTTTTTT TCCAACGCTC chr3R:26535718-26535838 68 1.10e-04 GCAACTTTTG TTTTTGTT TGCGACGCCA chr3L:6218719-6218839 74 1.10e-04 CAGCTATTTG TTTTTTTT CTCATTCGCC chr2R:6675749-6675869 11 1.10e-04 AGCCGGCAGA TTTTTGTT TATGTTTATT chr3R:16264120-16264240 24 1.10e-04 CATCGATATA TTTTTTTT AAATGTGTGC chr3L:16974979-16975099 67 1.10e-04 ctttgtttac tttttttt gcatttactc chrX:5904626-5904746 37 1.10e-04 acataTGTAT TTTTTTTT TATTTGTACA chr2L:12007103-12007223 79 1.10e-04 ctgtttttgt tttttgtt gttgATATAA chr2R:6613088-6613208 29 1.10e-04 tttcttccag tttttttt gtttactttt chr2L:12493683-12493803 110 1.10e-04 ttatttcact tttttttt ttt chr3R:30811459-30811579 55 1.10e-04 AAGTACATCG TTTTTGTT TTGAATTATT chr2L:2886695-2886815 52 1.10e-04 TTTCCCTGCT TTTTTGTT GCACTCTCTC chr3R:23941784-23941904 62 1.10e-04 GGGGCGTTAC TTTTTTTT TAGCACTTGA chr3L:10868241-10868361 22 1.10e-04 tttgttacgt tttttgtt gttgttgttt chr2R:10568699-10568819 112 1.10e-04 TTGCGACCGA TTTTTTTT C chr3L:7805493-7805613 55 1.10e-04 AGAGAATCtg tttttgtt tttgtctggt chr3R:22527161-22527281 77 1.10e-04 ACGGCTATTG TTTTTGTT TGGCTGGCGA chr2R:10598392-10598512 80 1.10e-04 tttattttat tttttttt tAGCCTTTTG chr3R:7793874-7793994 88 1.10e-04 ATTTTGTTTT TTTTTTTT AGTGAGCGGA chr2L:7954710-7954830 8 1.10e-04 TCCTCCC TTTTTTTT GTGTGTGCTG chr2L:12513920-12514040 61 1.10e-04 TCATAttttt tttttttt gggggggttt chr3R:14025960-14026080 26 1.10e-04 AATATATATT Tttttgtt ttgcttcgca chr3R:14069576-14069696 82 1.10e-04 tcagttcgtt tttttttt ttCGTATGTG chr2R:14140384-14140504 64 1.10e-04 Ctgtctttga tttttgtt tcttttcgtt chr2L:5001714-5001834 70 1.10e-04 ATAAATAATC TTTTTTTT CGGCGCTGAA chr3L:18013239-18013359 68 1.10e-04 Gttttttttt tttttttt ttttttCAAC chrX:15303705-15303825 64 1.10e-04 CTTGAATTTA TTTTTGTT TTATTCTTTT chr3L:22823429-22823549 88 1.10e-04 TTTGTGGCAA TTTTTGTT GTTGCTCTTG chr3R:14027081-14027201 95 1.10e-04 TTTAGACTGA TTTTTGTT TCTTATTAAA chr3L:11534356-11534476 15 1.86e-04 TGATCTCTGA TTGTTTTT CTGTGTATTA chr2R:17458381-17458501 104 1.86e-04 ATGGGACTGG TTGTTGTT GTACATAAC chr2L:18563232-18563352 102 1.86e-04 GTGATTTTCT TTGTTTTT GACTTTTTAT chr2R:11637476-11637596 5 1.86e-04 cttg ttgttgtt CCAAAGTCAT chr3L:18800436-18800556 61 1.86e-04 gccgttgttg ttgttgtt gctatttctC chr3R:9954796-9954916 99 1.86e-04 AACAAACAAC TTGTTGTT GCTGTTTTCA chr2L:1668639-1668759 41 1.86e-04 GCTTTTTGTC TTGTTTTT GAGCAAATAA chr3R:19165720-19165840 87 1.86e-04 TGTTGCGCTg ttgttgtt gttcgctcgc chr2L:7926477-7926597 56 1.86e-04 GATGTCGCGC TTGTTTTT CTCATTTTTT chr2L:9237831-9237951 28 1.86e-04 CGtgttgcca ttgttgtt cgtcttcgtg chr3L:19171913-19172033 88 1.86e-04 GCCGTTGTCG TTGTTGTT CTTGCCTTGT chr2R:7779644-7779764 45 1.86e-04 GTGCCACGTT TTGTTGTT GGCGCGCTGC chr3R:10084115-10084235 18 1.86e-04 ACCCTTGAAA TTGTTTTT CAGCCTTTTG chr2R:17108683-17108803 5 1.86e-04 CAAA TTGTTTTT CATGTTTACA chr3R:24278784-24278904 54 1.86e-04 TGTGACAACT TTGTTTTT ATTGAGCCGG chr3R:9387846-9387966 4 1.86e-04 CGA TTGTTGTT GTCTCGCTTG chr2L:8004345-8004465 61 1.86e-04 TGATTGGCGG TTGTTTTT TAAATTTAAA chr2R:13994244-13994364 85 1.86e-04 TGTTGTACGC TTGTTTTT TCGGGTTTTT chr2L:2214025-2214145 3 2.60e-04 AC TTTTTTCT GAATGTGGTG chr3L:14757903-14758023 7 2.60e-04 GTACGC TTTTTTCT CCTGCTTGTT chr3L:21026335-21026455 33 2.60e-04 GCTTTTGCTC TTTTTGCT gagcagagag chr3R:14286387-14286507 59 2.60e-04 TATTTCTTGG TTTTTGCT TTGGCTCTCA chr3L:3246945-3247065 23 2.60e-04 ATTAACCACT TTTTTGCT ATATCTATCC chr3L:548464-548584 110 2.60e-04 CCATGGCAAC TTTTTTCT TCT chr3L:12791141-12791261 69 2.60e-04 TGTTGGCGAA TTTTTGCT CATTCGAGAA chr3L:17570593-17570713 12 2.60e-04 TGTTTTTCTG TTTTTGCT GCGCTCGTTT chr3L:19897467-19897587 7 3.35e-04 AGATAG TTTTGTTT CCACTCTCCC chr2L:9175340-9175460 51 3.35e-04 TTGTGCTTAA TTTTGTTT TGCGTTTTGC chr3L:128430-128550 15 3.35e-04 TTCCCCTTAA TTTTGTTT TGTTTTCGCT chr3L:22851867-22851987 9 3.35e-04 GAATGCAG TTTTGTTT TATTTGGCCT chr3R:30280464-30280584 29 3.35e-04 TTGTTATAAG TTTTGTTT AGCTTTTCCT chr3L:14625033-14625153 87 3.35e-04 GTTGCGTGTG TTTTGTTT GGTTTCTGCT chr2L:8088052-8088172 7 3.35e-04 TCTGCA TTTTGTTT TAAATAAAAC chr2L:21753725-21753845 19 3.35e-04 AAACAAGTTG TTTTGGTT CGGTCGTATA chr2L:5978637-5978757 103 3.35e-04 GTTCGTTTCA TTTTGGTT CTGTTCTGTT chr2L:16677067-16677187 67 4.10e-04 TTTGCAGTAC TTTTTTTG CGGTAGTTGT chr3R:30281564-30281684 21 4.10e-04 CTTATCAGCA TTTTTGTG ATGATTTGCG chr3R:18742605-18742725 61 4.10e-04 TGCTGTTCAT TTTTTGTG CCTGTCTTGC chr3R:7967898-7968018 62 4.10e-04 AGTTCGCGTG TTTTTTTG CGAATCTCTG chr3L:21014680-21014800 42 4.10e-04 GTTTTTGCCA TTTTTGTG TGTGTTTTCA chr2L:7424359-7424479 57 4.10e-04 CAGACGTAGC TTTTTTTG GGGAACTTTT chrX:3761748-3761868 81 4.84e-04 TGCAAAAGCc tttctttt cttatcagtt chrX:8063289-8063409 48 4.84e-04 CTTTTTTCCT TTTCTTTT CGGAGGCCAA chr3R:9345057-9345177 37 4.84e-04 ACCGCAGCTG TTTCTTTT GGGGACAGAC chr3R:8854912-8855032 22 4.84e-04 AGACTTTTTC TTTCTTTT GAAGCGAGTT chr3R:21630488-21630608 36 4.84e-04 AAAGTTTCGC TTTCTTTT TGCACATCAT chr3L:7792361-7792481 104 4.84e-04 TATGTTCTGA TTTCTTTT CGTGCACAC chr2L:6644754-6644874 88 4.84e-04 TTATCAGTAA TTTCTGTT ATCGCTGACG chr3R:13016083-13016203 95 5.34e-04 TTGGTTTGGT TTGTtgct gtgctgtgcc chr2R:10473628-10473748 2 5.34e-04 C TTGTTTCT CTGTGGTCTA chr2L:10269860-10269980 56 5.34e-04 ATAAATAAAT TTGTTTCT AACTGATTAA chr3R:14361790-14361910 99 5.86e-04 GTTTTCCCCT TTGTGTTT GAAGCGCTAT chr3R:4810132-4810252 91 5.86e-04 GAGTTCCGAG TTGTGTTT TGGCTCTTCT chr2L:13290646-13290766 30 6.38e-04 TTAAGCTCTC TTGTTTTG AAAATGGCTG chr2R:23815977-23816097 107 6.38e-04 CCGAATGCCT TTGTTTTG CTTGTG chr2R:21713304-21713424 22 7.62e-04 TCTCTCGTTT TTTTCGTT GTGCCAACCG chr2R:24964266-24964386 74 7.62e-04 TGTATCTCGT TTTTCGTT CGGCGGTGGT chr3L:7993754-7993874 89 7.62e-04 AAGAATGAAA TTTTCGTT TGGGGATTTT chr3R:21829601-21829721 101 7.62e-04 CCGTGTGTAT TTGCTTTT GCGCAGACTC chr3R:17119176-17119296 33 7.62e-04 CAAGAGAGCA TTTTCTTT CTCTTTAACA chr2R:12261582-12261702 66 7.62e-04 TGCGGTTATT TTGCTGTT TCGCCTTCGC chr2L:72388-72508 35 8.12e-04 GGCACACGTA TTTTGGCT TTCAGATGCA chr3R:22781594-22781714 68 8.62e-04 CTTCGCCTCT TTTTTTCG GATTTCAGAT chr2L:9203501-9203621 11 8.62e-04 GTTTGTCTTA TTTTTTCG CTTCTGTTGG chr3L:17962336-17962456 96 8.62e-04 TTCGGCAAGC TTTTTTCG CACTTGTAAT chr3R:20782733-20782853 52 8.62e-04 TCGCTTGAGT TTTTTGCG GAACTTTTTG chr3L:1546628-1546748 104 9.63e-04 TGACGCGTCA TTTTGGTG GCGTACTTT chr3L:3420388-3420508 95 1.06e-03 cttcgcttcg tttcgttt cgcttcgtCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21616366-21616486 0.00011 108_[+4]_4 chrX:16599952-16600072 0.00011 77_[+4]_35 chr3R:14061512-14061632 0.00011 91_[+4]_21 chr2R:10564900-10565020 0.00011 16_[+4]_96 chr3L:11324605-11324725 0.00011 38_[+4]_74 chr3R:29210815-29210935 0.00011 27_[+4]_85 chr3L:17907565-17907685 0.00011 46_[+4]_66 chr2R:17869088-17869208 0.00011 5_[+4]_107 chr2L:16284544-16284664 0.00011 11_[+4]_101 chr2L:423321-423441 0.00011 85_[+4]_27 chr2L:6324524-6324644 0.00011 46_[+4]_66 chrX:8897995-8898115 0.00011 31_[+4]_81 chr3R:26535718-26535838 0.00011 67_[+4]_45 chr3L:6218719-6218839 0.00011 73_[+4]_39 chr2R:6675749-6675869 0.00011 10_[+4]_102 chr3R:16264120-16264240 0.00011 23_[+4]_89 chr3L:16974979-16975099 0.00011 66_[+4]_46 chrX:5904626-5904746 0.00011 36_[+4]_76 chr2L:12007103-12007223 0.00011 78_[+4]_34 chr2R:6613088-6613208 0.00011 28_[+4]_84 chr2L:12493683-12493803 0.00011 109_[+4]_3 chr3R:30811459-30811579 0.00011 54_[+4]_58 chr2L:2886695-2886815 0.00011 51_[+4]_61 chr3R:23941784-23941904 0.00011 61_[+4]_51 chr3L:10868241-10868361 0.00011 21_[+4]_91 chr2R:10568699-10568819 0.00011 111_[+4]_1 chr3L:7805493-7805613 0.00011 54_[+4]_58 chr3R:22527161-22527281 0.00011 76_[+4]_36 chr2R:10598392-10598512 0.00011 79_[+4]_33 chr3R:7793874-7793994 0.00011 87_[+4]_25 chr2L:7954710-7954830 0.00011 7_[+4]_105 chr2L:12513920-12514040 0.00011 60_[+4]_52 chr3R:14025960-14026080 0.00011 25_[+4]_87 chr3R:14069576-14069696 0.00011 81_[+4]_31 chr2R:14140384-14140504 0.00011 63_[+4]_49 chr2L:5001714-5001834 0.00011 69_[+4]_43 chr3L:18013239-18013359 0.00011 67_[+4]_45 chrX:15303705-15303825 0.00011 63_[+4]_49 chr3L:22823429-22823549 0.00011 87_[+4]_25 chr3R:14027081-14027201 0.00011 94_[+4]_18 chr3L:11534356-11534476 0.00019 14_[+4]_98 chr2R:17458381-17458501 0.00019 103_[+4]_9 chr2L:18563232-18563352 0.00019 101_[+4]_11 chr2R:11637476-11637596 0.00019 4_[+4]_108 chr3L:18800436-18800556 0.00019 60_[+4]_52 chr3R:9954796-9954916 0.00019 98_[+4]_14 chr2L:1668639-1668759 0.00019 40_[+4]_72 chr3R:19165720-19165840 0.00019 86_[+4]_26 chr2L:7926477-7926597 0.00019 55_[+4]_57 chr2L:9237831-9237951 0.00019 27_[+4]_85 chr3L:19171913-19172033 0.00019 87_[+4]_25 chr2R:7779644-7779764 0.00019 44_[+4]_68 chr3R:10084115-10084235 0.00019 17_[+4]_95 chr2R:17108683-17108803 0.00019 4_[+4]_108 chr3R:24278784-24278904 0.00019 53_[+4]_59 chr3R:9387846-9387966 0.00019 3_[+4]_109 chr2L:8004345-8004465 0.00019 60_[+4]_52 chr2R:13994244-13994364 0.00019 84_[+4]_28 chr2L:2214025-2214145 0.00026 2_[+4]_110 chr3L:14757903-14758023 0.00026 6_[+4]_106 chr3L:21026335-21026455 0.00026 32_[+4]_80 chr3R:14286387-14286507 0.00026 58_[+4]_54 chr3L:3246945-3247065 0.00026 22_[+4]_90 chr3L:548464-548584 0.00026 109_[+4]_3 chr3L:12791141-12791261 0.00026 68_[+4]_44 chr3L:17570593-17570713 0.00026 11_[+4]_101 chr3L:19897467-19897587 0.00034 6_[+4]_106 chr2L:9175340-9175460 0.00034 50_[+4]_62 chr3L:128430-128550 0.00034 14_[+4]_98 chr3L:22851867-22851987 0.00034 8_[+4]_104 chr3R:30280464-30280584 0.00034 28_[+4]_84 chr3L:14625033-14625153 0.00034 86_[+4]_26 chr2L:8088052-8088172 0.00034 6_[+4]_106 chr2L:21753725-21753845 0.00034 18_[+4]_94 chr2L:5978637-5978757 0.00034 102_[+4]_10 chr2L:16677067-16677187 0.00041 66_[+4]_46 chr3R:30281564-30281684 0.00041 20_[+4]_92 chr3R:18742605-18742725 0.00041 60_[+4]_52 chr3R:7967898-7968018 0.00041 61_[+4]_51 chr3L:21014680-21014800 0.00041 41_[+4]_71 chr2L:7424359-7424479 0.00041 56_[+4]_56 chrX:3761748-3761868 0.00048 80_[+4]_32 chrX:8063289-8063409 0.00048 47_[+4]_65 chr3R:9345057-9345177 0.00048 36_[+4]_76 chr3R:8854912-8855032 0.00048 21_[+4]_91 chr3R:21630488-21630608 0.00048 35_[+4]_77 chr3L:7792361-7792481 0.00048 103_[+4]_9 chr2L:6644754-6644874 0.00048 87_[+4]_25 chr3R:13016083-13016203 0.00053 94_[+4]_18 chr2R:10473628-10473748 0.00053 1_[+4]_111 chr2L:10269860-10269980 0.00053 55_[+4]_57 chr3R:14361790-14361910 0.00059 98_[+4]_14 chr3R:4810132-4810252 0.00059 90_[+4]_22 chr2L:13290646-13290766 0.00064 29_[+4]_83 chr2R:23815977-23816097 0.00064 106_[+4]_6 chr2R:21713304-21713424 0.00076 21_[+4]_91 chr2R:24964266-24964386 0.00076 73_[+4]_39 chr3L:7993754-7993874 0.00076 88_[+4]_24 chr3R:21829601-21829721 0.00076 100_[+4]_12 chr3R:17119176-17119296 0.00076 32_[+4]_80 chr2R:12261582-12261702 0.00076 65_[+4]_47 chr2L:72388-72508 0.00081 34_[+4]_78 chr3R:22781594-22781714 0.00086 67_[+4]_45 chr2L:9203501-9203621 0.00086 10_[+4]_102 chr3L:17962336-17962456 0.00086 95_[+4]_17 chr3R:20782733-20782853 0.00086 51_[+4]_61 chr3L:1546628-1546748 0.00096 103_[+4]_9 chr3L:3420388-3420508 0.0011 94_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTKTT width=8 seqs=108 chr3R:21616366-21616486 ( 109) TTTTTTTT 1 chrX:16599952-16600072 ( 78) TTTTTTTT 1 chr3R:14061512-14061632 ( 92) TTTTTTTT 1 chr2R:10564900-10565020 ( 17) TTTTTGTT 1 chr3L:11324605-11324725 ( 39) TTTTTTTT 1 chr3R:29210815-29210935 ( 28) TTTTTTTT 1 chr3L:17907565-17907685 ( 47) TTTTTTTT 1 chr2R:17869088-17869208 ( 6) TTTTTTTT 1 chr2L:16284544-16284664 ( 12) TTTTTTTT 1 chr2L:423321-423441 ( 86) TTTTTTTT 1 chr2L:6324524-6324644 ( 47) TTTTTGTT 1 chrX:8897995-8898115 ( 32) TTTTTTTT 1 chr3R:26535718-26535838 ( 68) TTTTTGTT 1 chr3L:6218719-6218839 ( 74) TTTTTTTT 1 chr2R:6675749-6675869 ( 11) TTTTTGTT 1 chr3R:16264120-16264240 ( 24) TTTTTTTT 1 chr3L:16974979-16975099 ( 67) TTTTTTTT 1 chrX:5904626-5904746 ( 37) TTTTTTTT 1 chr2L:12007103-12007223 ( 79) TTTTTGTT 1 chr2R:6613088-6613208 ( 29) TTTTTTTT 1 chr2L:12493683-12493803 ( 110) TTTTTTTT 1 chr3R:30811459-30811579 ( 55) TTTTTGTT 1 chr2L:2886695-2886815 ( 52) TTTTTGTT 1 chr3R:23941784-23941904 ( 62) TTTTTTTT 1 chr3L:10868241-10868361 ( 22) TTTTTGTT 1 chr2R:10568699-10568819 ( 112) TTTTTTTT 1 chr3L:7805493-7805613 ( 55) TTTTTGTT 1 chr3R:22527161-22527281 ( 77) TTTTTGTT 1 chr2R:10598392-10598512 ( 80) TTTTTTTT 1 chr3R:7793874-7793994 ( 88) TTTTTTTT 1 chr2L:7954710-7954830 ( 8) TTTTTTTT 1 chr2L:12513920-12514040 ( 61) TTTTTTTT 1 chr3R:14025960-14026080 ( 26) TTTTTGTT 1 chr3R:14069576-14069696 ( 82) TTTTTTTT 1 chr2R:14140384-14140504 ( 64) TTTTTGTT 1 chr2L:5001714-5001834 ( 70) TTTTTTTT 1 chr3L:18013239-18013359 ( 68) TTTTTTTT 1 chrX:15303705-15303825 ( 64) TTTTTGTT 1 chr3L:22823429-22823549 ( 88) TTTTTGTT 1 chr3R:14027081-14027201 ( 95) TTTTTGTT 1 chr3L:11534356-11534476 ( 15) TTGTTTTT 1 chr2R:17458381-17458501 ( 104) TTGTTGTT 1 chr2L:18563232-18563352 ( 102) TTGTTTTT 1 chr2R:11637476-11637596 ( 5) TTGTTGTT 1 chr3L:18800436-18800556 ( 61) TTGTTGTT 1 chr3R:9954796-9954916 ( 99) TTGTTGTT 1 chr2L:1668639-1668759 ( 41) TTGTTTTT 1 chr3R:19165720-19165840 ( 87) TTGTTGTT 1 chr2L:7926477-7926597 ( 56) TTGTTTTT 1 chr2L:9237831-9237951 ( 28) TTGTTGTT 1 chr3L:19171913-19172033 ( 88) TTGTTGTT 1 chr2R:7779644-7779764 ( 45) TTGTTGTT 1 chr3R:10084115-10084235 ( 18) TTGTTTTT 1 chr2R:17108683-17108803 ( 5) TTGTTTTT 1 chr3R:24278784-24278904 ( 54) TTGTTTTT 1 chr3R:9387846-9387966 ( 4) TTGTTGTT 1 chr2L:8004345-8004465 ( 61) TTGTTTTT 1 chr2R:13994244-13994364 ( 85) TTGTTTTT 1 chr2L:2214025-2214145 ( 3) TTTTTTCT 1 chr3L:14757903-14758023 ( 7) TTTTTTCT 1 chr3L:21026335-21026455 ( 33) TTTTTGCT 1 chr3R:14286387-14286507 ( 59) TTTTTGCT 1 chr3L:3246945-3247065 ( 23) TTTTTGCT 1 chr3L:548464-548584 ( 110) TTTTTTCT 1 chr3L:12791141-12791261 ( 69) TTTTTGCT 1 chr3L:17570593-17570713 ( 12) TTTTTGCT 1 chr3L:19897467-19897587 ( 7) TTTTGTTT 1 chr2L:9175340-9175460 ( 51) TTTTGTTT 1 chr3L:128430-128550 ( 15) TTTTGTTT 1 chr3L:22851867-22851987 ( 9) TTTTGTTT 1 chr3R:30280464-30280584 ( 29) TTTTGTTT 1 chr3L:14625033-14625153 ( 87) TTTTGTTT 1 chr2L:8088052-8088172 ( 7) TTTTGTTT 1 chr2L:21753725-21753845 ( 19) TTTTGGTT 1 chr2L:5978637-5978757 ( 103) TTTTGGTT 1 chr2L:16677067-16677187 ( 67) TTTTTTTG 1 chr3R:30281564-30281684 ( 21) TTTTTGTG 1 chr3R:18742605-18742725 ( 61) TTTTTGTG 1 chr3R:7967898-7968018 ( 62) TTTTTTTG 1 chr3L:21014680-21014800 ( 42) TTTTTGTG 1 chr2L:7424359-7424479 ( 57) TTTTTTTG 1 chrX:3761748-3761868 ( 81) TTTCTTTT 1 chrX:8063289-8063409 ( 48) TTTCTTTT 1 chr3R:9345057-9345177 ( 37) TTTCTTTT 1 chr3R:8854912-8855032 ( 22) TTTCTTTT 1 chr3R:21630488-21630608 ( 36) TTTCTTTT 1 chr3L:7792361-7792481 ( 104) TTTCTTTT 1 chr2L:6644754-6644874 ( 88) TTTCTGTT 1 chr3R:13016083-13016203 ( 95) TTGTTGCT 1 chr2R:10473628-10473748 ( 2) TTGTTTCT 1 chr2L:10269860-10269980 ( 56) TTGTTTCT 1 chr3R:14361790-14361910 ( 99) TTGTGTTT 1 chr3R:4810132-4810252 ( 91) TTGTGTTT 1 chr2L:13290646-13290766 ( 30) TTGTTTTG 1 chr2R:23815977-23816097 ( 107) TTGTTTTG 1 chr2R:21713304-21713424 ( 22) TTTTCGTT 1 chr2R:24964266-24964386 ( 74) TTTTCGTT 1 chr3L:7993754-7993874 ( 89) TTTTCGTT 1 chr3R:21829601-21829721 ( 101) TTGCTTTT 1 chr3R:17119176-17119296 ( 33) TTTTCTTT 1 chr2R:12261582-12261702 ( 66) TTGCTGTT 1 chr2L:72388-72508 ( 35) TTTTGGCT 1 chr3R:22781594-22781714 ( 68) TTTTTTCG 1 chr2L:9203501-9203621 ( 11) TTTTTTCG 1 chr3L:17962336-17962456 ( 96) TTTTTTCG 1 chr3R:20782733-20782853 ( 52) TTTTTGCG 1 chr3L:1546628-1546748 ( 104) TTTTGGTG 1 chr3L:3420388-3420508 ( 95) TTTCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.67987 E= 7.1e-021 -1340 -1340 -1340 173 -1340 -1340 -1340 173 -1340 -1340 28 132 -1340 -111 -1340 159 -1340 -243 -66 147 -1340 -1340 96 100 -1340 -43 -1340 150 -1340 -1340 -77 155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 7.1e-021 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.092593 0.000000 0.907407 0.000000 0.037037 0.129630 0.833333 0.000000 0.000000 0.398148 0.601852 0.000000 0.148148 0.000000 0.851852 0.000000 0.000000 0.120370 0.879630 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[TG]TT[TG]TT -------------------------------------------------------------------------------- Time 26.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AAYAAAAA MEME-5 width = 8 sites = 47 llr = 380 E-value = 4.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa1a87aa pos.-specific C ::5::3:: probability G ::::2::: matrix T ::4::::: bits 2.3 2.1 1.9 ** * ** 1.6 ** * ** Relative 1.4 ** * ** Entropy 1.2 ** ** ** (11.7 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAAAAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22737182-22737302 111 3.80e-05 ATACAAAAAT AACAAAAA GG chr3R:24549894-24550014 25 3.80e-05 ccaaaaaaat aacaaaaa ctgagtttga chr2R:11637476-11637596 85 3.80e-05 CGGTAGCAGC AACAAAAA CAACGGAACG chr3L:16195515-16195635 26 3.80e-05 AAATGAATGC AACAAAAA AATGTAAAAT chr2R:19620120-19620240 41 3.80e-05 GACaaacaat aacaaaaa aaaaaaaaac chr2L:10794160-10794280 82 3.80e-05 aaaGTGGAGC AACAAAAA CCTGTCACGT chr3R:21977237-21977357 44 3.80e-05 GCGCaaacaa aacaaaaa aaaaagagag chr2L:18564077-18564197 40 3.80e-05 CCAAAACAGG AACAAAAA CAGAAGCAAA chr2R:14140384-14140504 38 3.80e-05 cCGGCCAAAC AACAAAAA TTCTTTCGCt chr2L:10269860-10269980 3 3.80e-05 GG AACAAAAA TGACTTGTTG chrX:1271258-1271378 27 3.80e-05 aaacaaaatt aacaaaaa acattgtaca chr2R:19616297-19616417 58 6.38e-05 aagatgaaaa aacaacaa ataaataaat chr2L:18563232-18563352 14 6.38e-05 ATACGCGGCG AACAACAA GCGCGGCGAA chr2R:6871938-6872058 48 6.38e-05 TCAAGTGCGA AACAACAA TTTCGACTGC chr3R:21606706-21606826 5 6.38e-05 CAGC AACAACAA CGAGCGCAAA chr3L:9675545-9675665 110 6.38e-05 AGCAGAATAC AACAACAA GAA chr3L:5277162-5277282 98 6.38e-05 agCACCGGCA AACAACAA GTGAGCAAAG chr2L:5289422-5289542 1 6.38e-05 . AACAACAA GCCGCCGGAA chr3R:14027081-14027201 31 6.38e-05 TCCACTCGCA AACAACAA AAAACGAAAA chr2R:11614382-11614502 28 1.21e-04 aaaaaaataa aataaaaa ttaaactaca chr2R:6971744-6971864 87 1.21e-04 AAGTCAATTG AATAAAAA ACCAAAAATT chrX:8897995-8898115 20 1.21e-04 ATAAGCGGAC AATAAAAA CCGTTTTTTT chr3R:14057401-14057521 10 1.21e-04 CTAGTGGCG AATAAAAA GCGAATTGGA chr3R:19603105-19603225 43 1.21e-04 AAATAATATT AATAAAAA CAGATCAAAG chr3L:9468042-9468162 92 1.21e-04 GAGGAGACGC AATAAAAA CAGAAACGAA chr3R:5570932-5571052 52 1.21e-04 ACCGATTATG AATAAAAA TATTTCTTGT chr2L:8704970-8705090 51 1.21e-04 ATTCTCGCAA AATAAAAA AGGGAAAAAA chr3R:21630488-21630608 21 1.21e-04 ACCAAGAGCT AATAAAAA GTTTCGCTTT chr3R:10084115-10084235 68 1.21e-04 AAAGCGTCGC AATAAAAA CAGGAATTCG chr2R:12198910-12199030 96 1.21e-04 GAAATCATTC AATAAAAA CATAATTTGT chr3L:18812394-18812514 41 1.21e-04 GCAATAACAA AATAAAAA TGCGTCACAA chr2R:16161160-16161280 76 1.21e-04 aaaaaataaa aataaaaa gcagagagcc chr3L:16004643-16004763 29 1.60e-04 AATCGCGCAA AATAACAA AACGCGTGTG chr2L:6644754-6644874 110 1.60e-04 CTGACGTGAA AATAACAA ATA chr2R:6613088-6613208 86 1.86e-04 ATTAGTGCGA AACAGAAA CGAATTGCTT chr2L:4811612-4811732 65 2.04e-04 CAATAAACTG AACAGCAA TCCCAATCCC chr3R:29215068-29215188 10 2.04e-04 AGCAAAACC AACAGCAA CAACTATTGC chrX:10927353-10927473 30 2.04e-04 cggcagctac aacagcaa caccggcgac chr2R:11175611-11175731 111 2.60e-04 AAACAGAAGA AAAAAAAA AC chr2R:17108683-17108803 83 2.60e-04 CATTCGGCAC AAAAAAAA GAGAACGATC chr2R:16154115-16154235 24 2.60e-04 aaaaaacaga aaaaaaaa ctaaacagaa chr3L:17502332-17502452 57 3.00e-04 TTGATGTTTG AATAGAAA CACAAGATCA chr3R:14625687-14625807 34 3.00e-04 GTAGTGAGAC AATAGAAA TACTAGATAC chr2R:19394656-19394776 82 3.00e-04 CTATTAATTA AATAGAAA TTTTCAGTTT chrX:3761748-3761868 2 3.38e-04 A AAAAACAA CCCAAACAAT chr2R:23815977-23816097 44 3.38e-04 AAAACATGGT AAAAACAA AAACAAAACG chr2R:20996696-20996816 41 4.03e-04 AGCAGGCTCT AAAAGAAA AATCGAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22737182-22737302 3.8e-05 110_[+5]_2 chr3R:24549894-24550014 3.8e-05 24_[+5]_88 chr2R:11637476-11637596 3.8e-05 84_[+5]_28 chr3L:16195515-16195635 3.8e-05 25_[+5]_87 chr2R:19620120-19620240 3.8e-05 40_[+5]_72 chr2L:10794160-10794280 3.8e-05 81_[+5]_31 chr3R:21977237-21977357 3.8e-05 43_[+5]_69 chr2L:18564077-18564197 3.8e-05 39_[+5]_73 chr2R:14140384-14140504 3.8e-05 37_[+5]_75 chr2L:10269860-10269980 3.8e-05 2_[+5]_110 chrX:1271258-1271378 3.8e-05 26_[+5]_86 chr2R:19616297-19616417 6.4e-05 57_[+5]_55 chr2L:18563232-18563352 6.4e-05 13_[+5]_99 chr2R:6871938-6872058 6.4e-05 47_[+5]_65 chr3R:21606706-21606826 6.4e-05 4_[+5]_108 chr3L:9675545-9675665 6.4e-05 109_[+5]_3 chr3L:5277162-5277282 6.4e-05 97_[+5]_15 chr2L:5289422-5289542 6.4e-05 [+5]_112 chr3R:14027081-14027201 6.4e-05 30_[+5]_82 chr2R:11614382-11614502 0.00012 27_[+5]_85 chr2R:6971744-6971864 0.00012 86_[+5]_26 chrX:8897995-8898115 0.00012 19_[+5]_93 chr3R:14057401-14057521 0.00012 9_[+5]_103 chr3R:19603105-19603225 0.00012 42_[+5]_70 chr3L:9468042-9468162 0.00012 91_[+5]_21 chr3R:5570932-5571052 0.00012 51_[+5]_61 chr2L:8704970-8705090 0.00012 50_[+5]_62 chr3R:21630488-21630608 0.00012 20_[+5]_92 chr3R:10084115-10084235 0.00012 67_[+5]_45 chr2R:12198910-12199030 0.00012 95_[+5]_17 chr3L:18812394-18812514 0.00012 40_[+5]_72 chr2R:16161160-16161280 0.00012 75_[+5]_37 chr3L:16004643-16004763 0.00016 28_[+5]_84 chr2L:6644754-6644874 0.00016 109_[+5]_3 chr2R:6613088-6613208 0.00019 85_[+5]_27 chr2L:4811612-4811732 0.0002 64_[+5]_48 chr3R:29215068-29215188 0.0002 9_[+5]_103 chrX:10927353-10927473 0.0002 29_[+5]_83 chr2R:11175611-11175731 0.00026 110_[+5]_2 chr2R:17108683-17108803 0.00026 82_[+5]_30 chr2R:16154115-16154235 0.00026 23_[+5]_89 chr3L:17502332-17502452 0.0003 56_[+5]_56 chr3R:14625687-14625807 0.0003 33_[+5]_79 chr2R:19394656-19394776 0.0003 81_[+5]_31 chrX:3761748-3761868 0.00034 1_[+5]_111 chr2R:23815977-23816097 0.00034 43_[+5]_69 chr2R:20996696-20996816 0.0004 40_[+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAYAAAAA width=8 seqs=47 chr2R:22737182-22737302 ( 111) AACAAAAA 1 chr3R:24549894-24550014 ( 25) AACAAAAA 1 chr2R:11637476-11637596 ( 85) AACAAAAA 1 chr3L:16195515-16195635 ( 26) AACAAAAA 1 chr2R:19620120-19620240 ( 41) AACAAAAA 1 chr2L:10794160-10794280 ( 82) AACAAAAA 1 chr3R:21977237-21977357 ( 44) AACAAAAA 1 chr2L:18564077-18564197 ( 40) AACAAAAA 1 chr2R:14140384-14140504 ( 38) AACAAAAA 1 chr2L:10269860-10269980 ( 3) AACAAAAA 1 chrX:1271258-1271378 ( 27) AACAAAAA 1 chr2R:19616297-19616417 ( 58) AACAACAA 1 chr2L:18563232-18563352 ( 14) AACAACAA 1 chr2R:6871938-6872058 ( 48) AACAACAA 1 chr3R:21606706-21606826 ( 5) AACAACAA 1 chr3L:9675545-9675665 ( 110) AACAACAA 1 chr3L:5277162-5277282 ( 98) AACAACAA 1 chr2L:5289422-5289542 ( 1) AACAACAA 1 chr3R:14027081-14027201 ( 31) AACAACAA 1 chr2R:11614382-11614502 ( 28) AATAAAAA 1 chr2R:6971744-6971864 ( 87) AATAAAAA 1 chrX:8897995-8898115 ( 20) AATAAAAA 1 chr3R:14057401-14057521 ( 10) AATAAAAA 1 chr3R:19603105-19603225 ( 43) AATAAAAA 1 chr3L:9468042-9468162 ( 92) AATAAAAA 1 chr3R:5570932-5571052 ( 52) AATAAAAA 1 chr2L:8704970-8705090 ( 51) AATAAAAA 1 chr3R:21630488-21630608 ( 21) AATAAAAA 1 chr3R:10084115-10084235 ( 68) AATAAAAA 1 chr2R:12198910-12199030 ( 96) AATAAAAA 1 chr3L:18812394-18812514 ( 41) AATAAAAA 1 chr2R:16161160-16161280 ( 76) AATAAAAA 1 chr3L:16004643-16004763 ( 29) AATAACAA 1 chr2L:6644754-6644874 ( 110) AATAACAA 1 chr2R:6613088-6613208 ( 86) AACAGAAA 1 chr2L:4811612-4811732 ( 65) AACAGCAA 1 chr3R:29215068-29215188 ( 10) AACAGCAA 1 chrX:10927353-10927473 ( 30) AACAGCAA 1 chr2R:11175611-11175731 ( 111) AAAAAAAA 1 chr2R:17108683-17108803 ( 83) AAAAAAAA 1 chr2R:16154115-16154235 ( 24) AAAAAAAA 1 chr3L:17502332-17502452 ( 57) AATAGAAA 1 chr3R:14625687-14625807 ( 34) AATAGAAA 1 chr2R:19394656-19394776 ( 82) AATAGAAA 1 chrX:3761748-3761868 ( 2) AAAAACAA 1 chr2R:23815977-23816097 ( 44) AAAAACAA 1 chr2R:20996696-20996816 ( 41) AAAAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 4.5e+000 177 -1220 -1220 -1220 177 -1220 -1220 -1220 -120 129 -1220 35 177 -1220 -1220 -1220 150 -1220 -27 -1220 121 67 -1220 -1220 177 -1220 -1220 -1220 177 -1220 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 4.5e+000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.127660 0.489362 0.000000 0.382979 1.000000 0.000000 0.000000 0.000000 0.829787 0.000000 0.170213 0.000000 0.680851 0.319149 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYAAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AA[CT]AA[AC]AA -------------------------------------------------------------------------------- Time 31.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14027081-14027201 4.49e-04 30_[+5(6.38e-05)]_1_[+2(6.44e-05)]_\ 73 chr3L:17570593-17570713 1.83e-02 20_[+1(9.71e-05)]_92 chr3L:12791141-12791261 5.76e-03 120 chrX:1271258-1271378 2.36e-03 16_[+2(3.80e-05)]_2_[+5(3.80e-05)]_\ 17_[+5(6.38e-05)]_61 chr3L:22823429-22823549 2.28e-03 120 chr3L:7530826-7530946 8.70e-02 120 chr2R:23815977-23816097 1.89e-05 45_[+2(3.80e-05)]_27_[+1(2.10e-05)]_\ 32 chr3L:8518823-8518943 2.98e-04 18_[+2(3.80e-05)]_12_[+3(6.50e-05)]_\ 74 chrX:15303705-15303825 7.42e-03 120 chr2R:13994244-13994364 2.06e-01 120 chr3L:18013239-18013359 1.36e-01 120 chr2L:6644754-6644874 5.59e-03 120 chr2L:5001714-5001834 2.07e-01 120 chr2L:10269860-10269980 7.39e-03 2_[+5(3.80e-05)]_110 chr2R:14140384-14140504 6.46e-04 37_[+5(3.80e-05)]_75 chr2L:8004345-8004465 1.19e-01 120 chr2R:16161160-16161280 8.97e-04 2_[+2(3.80e-05)]_75_[+3(8.27e-05)]_\ 27 chr2L:7424359-7424479 5.64e-01 120 chr3R:4187381-4187501 6.22e-01 120 chr3L:342968-343088 2.04e-02 75_[+2(6.44e-05)]_37 chr2L:18564077-18564197 3.48e-02 39_[+5(3.80e-05)]_73 chr2R:22644726-22644846 3.49e-02 3_[+5(6.38e-05)]_109 chr3L:2490036-2490156 1.35e-03 34_[+1(3.39e-05)]_3_[+3(8.27e-05)]_\ 13_[+1(7.90e-05)]_22_[+3(8.98e-06)]_16 chr3R:9387846-9387966 2.12e-01 120 chr3R:14069576-14069696 2.06e-01 120 chr3R:14025960-14026080 1.60e-01 120 chr3L:10663238-10663358 1.96e-01 120 chr3L:21014680-21014800 1.94e-01 120 chr2L:12513920-12514040 2.61e-01 120 chr3L:748566-748686 1.36e-02 17_[+3(5.62e-05)]_95 chr3L:769223-769343 2.46e-01 120 chr2R:19415004-19415124 5.83e-02 120 chr3R:24278784-24278904 1.27e-01 120 chr2R:16154115-16154235 6.08e-03 9_[+2(3.80e-05)]_103 chr3L:18812394-18812514 1.77e-02 120 chr2L:5289422-5289542 8.37e-03 [+5(6.38e-05)]_43_[+2(3.80e-05)]_61 chr3L:7801431-7801551 5.34e-02 120 chr3R:8306263-8306383 6.30e-01 120 chr2R:17108683-17108803 2.39e-04 21_[+2(3.80e-05)]_91 chr2L:7954710-7954830 2.11e-02 120 chr2L:12545822-12545942 3.47e-03 43_[+3(2.22e-05)]_4_[+3(2.22e-05)]_\ 15_[+2(6.44e-05)]_34 chr2R:12261582-12261702 6.38e-01 120 chr3R:7793874-7793994 3.72e-05 35_[+2(3.80e-05)]_77 chr3R:6388721-6388841 5.93e-01 120 chr3R:21977237-21977357 4.10e-05 37_[+2(3.80e-05)]_22_[+2(3.80e-05)]_\ 45 chr3L:18112894-18113014 7.98e-01 120 chr3L:5277162-5277282 8.35e-04 55_[+3(2.22e-05)]_7_[+3(4.73e-05)]_\ 19_[+5(6.38e-05)]_15 chr2R:10598392-10598512 3.62e-02 120 chr3R:9675127-9675247 3.47e-01 120 chr2R:12198910-12199030 4.54e-02 120 chr3R:20782733-20782853 3.61e-02 30_[+1(5.72e-05)]_[+1(7.50e-05)]_74 chr3L:17962336-17962456 1.43e-01 120 chr3L:9358882-9359002 2.45e-01 120 chr3R:12219690-12219810 6.75e-01 120 chr3R:22527161-22527281 2.37e-01 120 chr3L:10738396-10738516 1.95e-01 120 chr3L:7805493-7805613 2.57e-02 120 chr3R:10084115-10084235 1.58e-03 120 chr2R:19394656-19394776 3.68e-01 120 chrX:1276530-1276650 5.98e-03 87_[+3(4.73e-05)]_25 chr3R:8670153-8670273 8.95e-01 120 chr3L:11788941-11789061 1.20e-02 57_[+2(3.80e-05)]_55 chr2L:3787087-3787207 4.89e-01 120 chr2R:7779644-7779764 2.90e-01 120 chr2R:18180136-18180256 3.60e-01 120 chr2L:5978637-5978757 5.16e-01 120 chr3R:14513669-14513789 2.43e-01 120 chr3L:20827304-20827424 4.48e-02 120 chr3L:7792361-7792481 4.14e-01 120 chr2R:10473628-10473748 9.85e-04 94_[+2(3.80e-05)]_18 chr2R:20996696-20996816 5.45e-03 120 chr2R:10568699-10568819 9.50e-03 43_[+3(2.22e-05)]_69 chr3R:21630488-21630608 4.64e-03 120 chr3L:10868241-10868361 5.25e-01 120 chr3R:23941784-23941904 7.48e-02 120 chr2L:10794160-10794280 5.79e-03 34_[+2(3.80e-05)]_[+5(3.80e-05)]_16_\ [+2(3.80e-05)]_7_[+5(3.80e-05)]_31 chr2R:6145666-6145786 9.60e-01 120 chr3L:3420388-3420508 2.81e-01 120 chr2L:2886695-2886815 1.30e-04 68_[+1(2.10e-05)]_44 chr3L:20518228-20518348 7.52e-01 120 chr3L:19171913-19172033 1.02e-02 7_[+1(8.86e-06)]_105 chr3R:30811459-30811579 4.27e-02 120 chr2L:8704970-8705090 1.47e-02 120 chr2L:9237831-9237951 1.51e-02 [+3(3.44e-05)]_112 chr2L:12493683-12493803 5.47e-04 49_[+2(3.80e-05)]_63 chr2L:21623698-21623818 1.93e-02 14_[+1(3.39e-05)]_98 chr3L:9447417-9447537 9.65e-01 120 chr2L:6643498-6643618 2.20e-01 120 chr2R:6613088-6613208 4.43e-04 13_[+1(5.72e-05)]_99 chr3L:9381781-9381901 4.89e-02 61_[+3(2.83e-05)]_51 chr3R:5570932-5571052 1.22e-02 100_[+3(6.50e-05)]_12 chr2R:19620120-19620240 9.21e-03 40_[+5(3.80e-05)]_72 chr2R:13042212-13042332 1.44e-01 100_[+1(5.72e-05)]_12 chr3L:9468042-9468162 9.34e-03 61_[+2(3.80e-05)]_33_[+2(6.44e-05)]_\ 10 chr2L:7926477-7926597 2.60e-02 5_[+1(3.39e-05)]_107 chr3L:548464-548584 4.25e-01 120 chrX:6981715-6981835 1.23e-01 40_[+1(3.98e-05)]_13_[+1(7.50e-05)]_\ 51 chr2L:21753725-21753845 3.51e-03 120 chrX:10927353-10927473 5.97e-02 120 chr3R:13016083-13016203 6.01e-01 120 chr3R:7967898-7968018 6.92e-02 120 chr2R:11175611-11175731 7.62e-04 3_[+2(3.80e-05)]_4_[+2(6.44e-05)]_\ 97 chr2R:14174856-14174976 2.00e-01 120 chr3L:319390-319510 3.74e-01 120 chr2R:17461929-17462049 1.84e-01 120 chr2R:10156212-10156332 3.31e-01 120 chr2R:12985813-12985933 2.67e-03 90_[+3(8.98e-06)]_22 chr3L:9675545-9675665 6.70e-04 78_[+3(2.83e-05)]_23_[+5(6.38e-05)]_\ 3 chr2R:23659104-23659224 6.68e-03 70_[+1(3.98e-05)]_1_[+1(3.98e-05)]_\ 33 chr3R:19165720-19165840 7.02e-05 97_[+1(2.10e-05)]_15 chr2L:12007103-12007223 2.11e-01 120 chr2L:2999198-2999318 9.65e-02 120 chr2L:13290646-13290766 1.06e-03 78_[+3(8.98e-06)]_34 chrX:2642531-2642651 2.85e-02 86_[+1(3.39e-05)]_[+1(3.39e-05)]_18 chr2L:8088052-8088172 1.86e-01 120 chr3R:23223662-23223782 7.36e-01 120 chr3R:13051453-13051573 3.19e-02 34_[+1(7.50e-05)]_78 chr3L:3246945-3247065 4.42e-01 120 chr2R:21056910-21057030 1.21e-01 120 chr3R:14286387-14286507 5.26e-03 83_[+1(8.86e-06)]_29 chr2L:72388-72508 6.65e-04 120 chr3R:20765979-20766099 2.08e-04 29_[+2(3.80e-05)]_83 chr3R:17119176-17119296 6.37e-05 7_[+2(3.80e-05)]_105 chrX:5904626-5904746 2.35e-01 120 chr3R:19603105-19603225 2.20e-01 120 chr3R:10001466-10001586 8.90e-01 120 chr3L:14038310-14038430 5.92e-02 32_[+3(8.98e-06)]_57_[+3(2.22e-05)]_\ 2_[+3(8.98e-06)]_5 chrX:15320492-15320612 1.20e-01 120 chrX:15811749-15811869 1.62e-03 10_[+3(2.83e-05)]_73_[+1(2.10e-05)]_\ 4_[+1(8.86e-06)]_9 chr3R:21829601-21829721 6.60e-01 120 chr3R:10579738-10579858 9.92e-01 120 chr3L:17950547-17950667 1.87e-01 120 chr2L:1668639-1668759 4.79e-03 120 chr3L:14625033-14625153 1.83e-01 120 chr3R:30280464-30280584 2.62e-02 120 chr3L:16974979-16975099 3.64e-01 120 chr3R:16236573-16236693 5.33e-01 120 chr3L:7993754-7993874 1.19e-02 120 chr3R:21606706-21606826 6.25e-04 4_[+5(6.38e-05)]_94_[+2(6.44e-05)]_\ 6 chr2L:3713096-3713216 5.08e-01 120 chr3L:18061850-18061970 3.44e-02 90_[+3(5.62e-05)]_10_[+3(8.98e-06)]_\ 4 chr3R:9954796-9954916 1.48e-02 120 chr3L:16195515-16195635 8.93e-03 25_[+5(3.80e-05)]_74_[+2(3.80e-05)]_\ 5 chr2L:67151-67271 2.29e-01 120 chr3L:21026335-21026455 4.11e-03 52_[+3(2.22e-05)]_60 chr3R:8854912-8855032 3.59e-01 120 chrX:15834682-15834802 1.28e-03 55_[+3(2.22e-05)]_19_[+3(2.22e-05)]_\ 30 chr2R:8240915-8241035 6.51e-01 120 chr3L:13494458-13494578 2.64e-02 120 chr3R:26980357-26980477 9.84e-06 8_[+2(3.80e-05)]_69_[+1(8.86e-06)]_\ 14_[+3(5.62e-05)]_5 chr3R:16264120-16264240 7.93e-04 120 chr3L:17607098-17607218 2.50e-03 14_[+1(5.72e-05)]_98 chr3R:14057401-14057521 6.17e-02 120 chr2R:24964266-24964386 6.50e-04 96_[+2(6.44e-05)]_7_[+1(5.72e-05)]_\ 1 chr2R:21713304-21713424 1.93e-02 120 chr3L:18800436-18800556 1.04e-02 112_[+1(7.50e-05)] chr2L:21250705-21250825 6.55e-03 96_[+1(8.86e-06)]_16 chr2R:6675749-6675869 4.06e-01 120 chr3L:6218719-6218839 4.49e-03 111_[+2(3.80e-05)]_1 chr3L:17577605-17577725 7.81e-01 120 chrX:17489975-17490095 8.84e-01 120 chr3R:29215068-29215188 3.08e-03 46_[+1(2.10e-05)]_4_[+1(5.72e-05)]_\ 54 chr3R:9345057-9345177 1.23e-01 120 chr3R:11156892-11157012 2.04e-01 11_[+3(8.27e-05)]_101 chr3R:4403773-4403893 9.57e-01 120 chr3R:26535718-26535838 6.86e-03 48_[+3(8.27e-05)]_64 chr3R:9928782-9928902 3.21e-02 28_[+3(8.98e-06)]_15_[+3(8.98e-06)]_\ 61 chr3L:17576528-17576648 4.27e-03 63_[+1(2.10e-05)]_49 chr3L:2573059-2573179 9.90e-02 109_[+3(2.83e-05)]_3 chr3R:4810132-4810252 1.91e-02 75_[+3(8.27e-05)]_37 chr2R:11637476-11637596 1.82e-04 32_[+2(3.80e-05)]_44_[+5(3.80e-05)]_\ 28 chrX:7299849-7299969 5.29e-03 18_[+1(2.10e-05)]_31_[+3(6.50e-05)]_\ 55 chrX:8897995-8898115 5.70e-04 95_[+3(8.27e-05)]_17 chr3L:20730299-20730419 4.42e-04 6_[+3(2.22e-05)]_93_[+5(3.80e-05)]_\ 5 chr3R:13684367-13684487 4.29e-01 120 chr3L:18016665-18016785 1.81e-03 91_[+1(2.10e-05)]_2_[+1(8.86e-06)]_\ 11 chr2L:6324524-6324644 5.88e-03 33_[+1(3.98e-05)]_79 chr3R:18742605-18742725 3.62e-01 120 chr2L:10276980-10277100 1.71e-01 120 chr3R:24549894-24550014 7.57e-03 24_[+5(3.80e-05)]_13_[+2(3.80e-05)]_\ 67 chr2L:21237826-21237946 6.84e-02 120 chr2L:423321-423441 3.23e-01 120 chr2R:6871938-6872058 1.05e-03 47_[+5(6.38e-05)]_28_[+1(9.71e-05)]_\ 29 chr3R:31713576-31713696 1.28e-02 60_[+1(3.98e-05)]_2_[+1(2.10e-05)]_\ 42 chr2R:10238352-10238472 5.93e-03 27_[+3(6.50e-05)]_6_[+3(8.98e-06)]_\ 12_[+3(2.22e-05)]_14_[+3(2.22e-05)]_20_[+3(3.44e-05)]_1 chr3R:30281564-30281684 3.42e-02 120 chr3R:10588945-10589065 9.77e-01 120 chrX:796500-796620 6.89e-02 120 chr2L:9203501-9203621 2.32e-02 120 chr2L:18563232-18563352 1.49e-03 13_[+5(6.38e-05)]_99 chr2R:22242998-22243118 8.91e-02 120 chr3L:22851867-22851987 3.94e-02 73_[+1(2.10e-05)]_39 chrX:8063289-8063409 1.10e-04 63_[+5(3.80e-05)]_2_[+5(6.38e-05)]_\ 39 chr3L:18771441-18771561 2.92e-03 2_[+2(3.80e-05)]_16_[+2(6.44e-05)]_\ 86 chr3L:128430-128550 6.09e-02 120 chr2R:22641394-22641514 8.35e-01 120 chr2L:16284544-16284664 2.53e-01 120 chr2R:17869088-17869208 1.73e-02 24_[+2(6.44e-05)]_88 chr3R:22447423-22447543 8.28e-01 120 chr3R:22781594-22781714 1.71e-02 94_[+1(5.72e-05)]_18 chr3L:1546628-1546748 4.74e-02 70_[+1(8.86e-06)]_42 chr3L:17907565-17907685 1.32e-01 120 chr2L:9175340-9175460 7.90e-02 120 chr2R:13958038-13958158 1.24e-02 120 chr3L:14756531-14756651 5.34e-03 38_[+1(7.50e-05)]_74 chr2L:12507719-12507839 1.64e-02 28_[+3(2.22e-05)]_[+3(2.22e-05)]_76 chr2L:16677067-16677187 3.17e-01 120 chrX:13988961-13989081 1.07e-03 107_[+3(4.73e-05)]_5 chr2R:12586887-12587007 6.69e-01 120 chr3R:29210815-29210935 4.11e-02 120 chr3L:14757903-14758023 3.32e-02 28_[+1(7.90e-05)]_84 chr2R:6971744-6971864 6.89e-02 120 chr3L:17590790-17590910 6.45e-02 [+1(3.39e-05)]_[+1(3.39e-05)]_94_\ [+1(8.86e-06)]_2 chr3L:11324605-11324725 4.73e-01 120 chr2L:222056-222176 1.13e-01 120 chr3R:25027578-25027698 4.44e-01 120 chr2R:10564900-10565020 1.50e-01 120 chr3R:10054475-10054595 6.61e-01 120 chr2L:2214025-2214145 3.01e-01 120 chr2R:6132095-6132215 9.50e-03 69_[+1(3.98e-05)]_43 chr2R:12705064-12705184 9.73e-03 4_[+1(3.39e-05)]_108 chr3R:14061512-14061632 3.19e-01 120 chr3L:12410870-12410990 6.24e-01 120 chr3R:23888722-23888842 1.46e-01 120 chr3R:9237024-9237144 1.51e-02 10_[+3(2.22e-05)]_91_[+3(2.22e-05)]_\ 3 chr2R:11614382-11614502 1.56e-02 120 chr3L:17992370-17992490 2.82e-01 120 chr2R:7063815-7063935 1.22e-01 120 chrX:16599952-16600072 1.85e-01 120 chr3L:22824866-22824986 8.05e-02 65_[+3(3.44e-05)]_47 chr2L:4811612-4811732 2.13e-01 120 chr2L:16315165-16315285 8.49e-01 120 chr3L:15977689-15977809 4.51e-01 120 chr3R:18917004-18917124 6.03e-02 120 chr3R:14361790-14361910 1.17e-01 120 chr3R:21616366-21616486 1.61e-02 120 chr2R:22737182-22737302 1.63e-04 78_[+3(2.83e-05)]_24_[+5(3.80e-05)]_\ 2 chr3L:12850053-12850173 1.20e-02 120 chr3L:16004643-16004763 8.62e-03 79_[+2(3.80e-05)]_33 chr3L:12693415-12693535 1.16e-04 7_[+3(8.98e-06)]_53_[+1(8.86e-06)]_\ 44 chr2R:19616297-19616417 1.90e-02 57_[+5(6.38e-05)]_55 chr3L:19897467-19897587 1.11e-01 108_[+1(9.71e-05)]_4 chr2R:17458381-17458501 7.68e-03 120 chrX:3761748-3761868 3.98e-04 25_[+2(3.80e-05)]_87 chr3R:14625687-14625807 8.28e-02 120 chr3L:11534356-11534476 2.69e-01 120 chr3L:5768969-5769089 2.71e-01 120 chr3L:17502332-17502452 5.42e-02 120 chr2L:5237410-5237530 2.34e-02 17_[+3(2.22e-05)]_95 chr2R:9186306-9186426 2.51e-03 39_[+2(3.80e-05)]_30_[+3(5.62e-05)]_\ 35 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************