******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fkh.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:10354943-10355063 1.0000 120 chr2L:7523693-7523813 1.0000 120 chr3R:15354128-15354248 1.0000 120 chr3R:28569695-28569815 1.0000 120 chr3R:28563690-28563810 1.0000 120 chr3R:28597707-28597827 1.0000 120 chr2R:11534297-11534417 1.0000 120 chrX:16596533-16596653 1.0000 120 chr3R:17803159-17803279 1.0000 120 chr3R:28548592-28548712 1.0000 120 chr2L:789143-789263 1.0000 120 chr3R:28569906-28570026 1.0000 120 chr3R:10135221-10135341 1.0000 120 chr3R:7524346-7524466 1.0000 120 chr3R:17950059-17950179 1.0000 120 chrX:2738794-2738914 1.0000 120 chr3R:18572989-18573109 1.0000 120 chr3L:5180310-5180430 1.0000 120 chr2R:17563528-17563648 1.0000 120 chrX:6547055-6547175 1.0000 120 chrX:11439375-11439495 1.0000 120 chr2R:17852675-17852795 1.0000 120 chr2R:18485739-18485859 1.0000 120 chr3L:8684898-8685018 1.0000 120 chrX:16650196-16650316 1.0000 120 chr3R:28567929-28568049 1.0000 120 chr2L:7678750-7678870 1.0000 120 chr3R:16007286-16007406 1.0000 120 chr3R:21635297-21635417 1.0000 120 chr3R:14005245-14005365 1.0000 120 chrX:7228493-7228613 1.0000 120 chr2L:14506320-14506440 1.0000 120 chr3R:22380054-22380174 1.0000 120 chr2R:6686969-6687089 1.0000 120 chr3R:28550570-28550690 1.0000 120 chr3R:18433058-18433178 1.0000 120 chr3R:8890570-8890690 1.0000 120 chr3R:24601232-24601352 1.0000 120 chr2R:7655302-7655422 1.0000 120 chr2R:13936513-13936633 1.0000 120 chr2L:1502829-1502949 1.0000 120 chr3R:13446171-13446291 1.0000 120 chr3L:11278517-11278637 1.0000 120 chrX:8714356-8714476 1.0000 120 chrX:774492-774612 1.0000 120 chr3R:27920955-27921075 1.0000 120 chr2L:4375754-4375874 1.0000 120 chr3R:28580835-28580955 1.0000 120 chr2R:24133259-24133379 1.0000 120 chrX:1183336-1183456 1.0000 120 chr2R:19631126-19631246 1.0000 120 chrX:18084083-18084203 1.0000 120 chr3L:1140676-1140796 1.0000 120 chr3R:22669125-22669245 1.0000 120 chr2R:22635853-22635973 1.0000 120 chr3R:18779587-18779707 1.0000 120 chr2L:18878552-18878672 1.0000 120 chrX:9012887-9013007 1.0000 120 chr2R:22644643-22644763 1.0000 120 chr2L:7248297-7248417 1.0000 120 chr2L:10435992-10436112 1.0000 120 chr2R:12751569-12751689 1.0000 120 chr3R:28589302-28589422 1.0000 120 chrX:10733228-10733348 1.0000 120 chr3R:31869712-31869832 1.0000 120 chr3L:11686012-11686132 1.0000 120 chr2R:8170196-8170316 1.0000 120 chr3R:27067504-27067624 1.0000 120 chr3R:10052839-10052959 1.0000 120 chr3R:19060318-19060438 1.0000 120 chr3L:10838010-10838130 1.0000 120 chr3R:28568195-28568315 1.0000 120 chr3L:12482417-12482537 1.0000 120 chr2R:18947669-18947789 1.0000 120 chr2R:10068587-10068707 1.0000 120 chr2L:10754756-10754876 1.0000 120 chr3R:23747577-23747697 1.0000 120 chr2R:18178602-18178722 1.0000 120 chr2R:9950245-9950365 1.0000 120 chr3R:17965554-17965674 1.0000 120 chr3R:23126379-23126499 1.0000 120 chrX:18363577-18363697 1.0000 120 chrX:694496-694616 1.0000 120 chr3R:30062128-30062248 1.0000 120 chr2L:18556533-18556653 1.0000 120 chr3L:18866179-18866299 1.0000 120 chr3L:15631189-15631309 1.0000 120 chr2R:21640440-21640560 1.0000 120 chr3L:11004140-11004260 1.0000 120 chr3L:8873200-8873320 1.0000 120 chr3L:19559306-19559426 1.0000 120 chr3R:23119990-23120110 1.0000 120 chrX:9885481-9885601 1.0000 120 chr2L:14396363-14396483 1.0000 120 chr3R:5306259-5306379 1.0000 120 chr2L:18965406-18965526 1.0000 120 chr2R:22180446-22180566 1.0000 120 chr3L:9024986-9025106 1.0000 120 chr3L:7841721-7841841 1.0000 120 chrX:20483298-20483418 1.0000 120 chr3L:2433475-2433595 1.0000 120 chr3R:15407244-15407364 1.0000 120 chr3L:16166640-16166760 1.0000 120 chr2R:15951878-15951998 1.0000 120 chr2R:24981173-24981293 1.0000 120 chrX:16828748-16828868 1.0000 120 chr3R:30345616-30345736 1.0000 120 chr3R:21066620-21066740 1.0000 120 chr3R:11640057-11640177 1.0000 120 chrX:18374570-18374690 1.0000 120 chr3L:10341826-10341946 1.0000 120 chr3L:19979759-19979879 1.0000 120 chr2R:15601986-15602106 1.0000 120 chr3R:23178312-23178432 1.0000 120 chr2R:15474215-15474335 1.0000 120 chr2L:106640-106760 1.0000 120 chrX:10364694-10364814 1.0000 120 chr2R:25005695-25005815 1.0000 120 chrX:6708939-6709059 1.0000 120 chr3L:8834645-8834765 1.0000 120 chr2R:18334335-18334455 1.0000 120 chr3L:18002248-18002368 1.0000 120 chr3R:27695167-27695287 1.0000 120 chr2L:12030243-12030363 1.0000 120 chrX:6706716-6706836 1.0000 120 chr3R:11437663-11437783 1.0000 120 chr2L:5228804-5228924 1.0000 120 chr3R:13990196-13990316 1.0000 120 chr3R:28563890-28564010 1.0000 120 chr3L:139920-140040 1.0000 120 chr3R:28558890-28559010 1.0000 120 chr3L:8690944-8691064 1.0000 120 chr3R:9219532-9219652 1.0000 120 chr2R:21480511-21480631 1.0000 120 chr3R:30915400-30915520 1.0000 120 chr2L:14635384-14635504 1.0000 120 chr2R:10151183-10151303 1.0000 120 chr2L:5525876-5525996 1.0000 120 chr2L:1931856-1931976 1.0000 120 chr3R:30006015-30006135 1.0000 120 chr3R:19056982-19057102 1.0000 120 chr3R:26934646-26934766 1.0000 120 chr3R:14769144-14769264 1.0000 120 chr3L:20241708-20241828 1.0000 120 chr3L:7349433-7349553 1.0000 120 chr3L:9209752-9209872 1.0000 120 chr3L:1000097-1000217 1.0000 120 chrX:1901847-1901967 1.0000 120 chr2R:21303137-21303257 1.0000 120 chr3L:6830509-6830629 1.0000 120 chr2L:16540863-16540983 1.0000 120 chr3R:20827109-20827229 1.0000 120 chr3L:20449794-20449914 1.0000 120 chrX:15496810-15496930 1.0000 120 chrX:10385022-10385142 1.0000 120 chr3L:15648038-15648158 1.0000 120 chr3L:6556376-6556496 1.0000 120 chr3R:12699845-12699965 1.0000 120 chr3R:25544098-25544218 1.0000 120 chr2L:10266660-10266780 1.0000 120 chr3L:15632767-15632887 1.0000 120 chr3L:16359937-16360057 1.0000 120 chr3R:22618400-22618520 1.0000 120 chr2L:10472363-10472483 1.0000 120 chr2R:18436202-18436322 1.0000 120 chr3L:22894982-22895102 1.0000 120 chr3R:31271175-31271295 1.0000 120 chr3R:28588522-28588642 1.0000 120 chr2R:17693701-17693821 1.0000 120 chr3R:23302317-23302437 1.0000 120 chr3R:17945911-17946031 1.0000 120 chr2L:16530980-16531100 1.0000 120 chr3R:31758926-31759046 1.0000 120 chrX:13632812-13632932 1.0000 120 chr3L:16889684-16889804 1.0000 120 chr3R:14472711-14472831 1.0000 120 chr2R:12034496-12034616 1.0000 120 chr3L:13397759-13397879 1.0000 120 chr3R:9516574-9516694 1.0000 120 chr3L:5141856-5141976 1.0000 120 chr3L:20537830-20537950 1.0000 120 chr3L:7806988-7807108 1.0000 120 chr3L:18144716-18144836 1.0000 120 chr3R:11236164-11236284 1.0000 120 chr3R:25448855-25448975 1.0000 120 chr3R:9918957-9919077 1.0000 120 chr3L:6840034-6840154 1.0000 120 chr2L:20968933-20969053 1.0000 120 chr2R:11266010-11266130 1.0000 120 chr3R:14032579-14032699 1.0000 120 chr3R:30537063-30537183 1.0000 120 chr3L:8514845-8514965 1.0000 120 chr3R:22756432-22756552 1.0000 120 chr2R:14526828-14526948 1.0000 120 chr2R:18613048-18613168 1.0000 120 chr3L:21201401-21201521 1.0000 120 chr3L:6958275-6958395 1.0000 120 chr3R:6818336-6818456 1.0000 120 chr2R:10018958-10019078 1.0000 120 chr2R:17781888-17782008 1.0000 120 chr2R:17109252-17109372 1.0000 120 chr2L:9189436-9189556 1.0000 120 chr2L:11038276-11038396 1.0000 120 chr3R:20551623-20551743 1.0000 120 chr3L:12116440-12116560 1.0000 120 chr2R:14898315-14898435 1.0000 120 chr2R:10874272-10874392 1.0000 120 chrX:17852616-17852736 1.0000 120 chr2R:9463904-9464024 1.0000 120 chr3L:409873-409993 1.0000 120 chr3R:29077694-29077814 1.0000 120 chr3L:17005081-17005201 1.0000 120 chr2R:9404568-9404688 1.0000 120 chr2L:19412099-19412219 1.0000 120 chr2R:23402256-23402376 1.0000 120 chr2L:11990807-11990927 1.0000 120 chr2R:18602377-18602497 1.0000 120 chr2R:11646068-11646188 1.0000 120 chr2R:16591609-16591729 1.0000 120 chr2L:815884-816004 1.0000 120 chrX:7204802-7204922 1.0000 120 chrX:16917558-16917678 1.0000 120 chr2R:15568849-15568969 1.0000 120 chrX:5621999-5622119 1.0000 120 chr3L:14056969-14057089 1.0000 120 chrX:7967644-7967764 1.0000 120 chr3L:2439140-2439260 1.0000 120 chrX:9500819-9500939 1.0000 120 chrX:5768750-5768870 1.0000 120 chr2L:5721028-5721148 1.0000 120 chr3R:9056813-9056933 1.0000 120 chr3R:29049458-29049578 1.0000 120 chr3L:835587-835707 1.0000 120 chr2L:14495584-14495704 1.0000 120 chr2L:21324500-21324620 1.0000 120 chr3R:30012771-30012891 1.0000 120 chrX:16104758-16104878 1.0000 120 chr3R:12383933-12384053 1.0000 120 chr2L:14398690-14398810 1.0000 120 chrX:6253884-6254004 1.0000 120 chr2R:7729961-7730081 1.0000 120 chr3R:20915883-20916003 1.0000 120 chr3R:29724913-29725033 1.0000 120 chr3R:23121047-23121167 1.0000 120 chr3R:10514796-10514916 1.0000 120 chr3L:10845899-10846019 1.0000 120 chrX:19375599-19375719 1.0000 120 chr3R:18445578-18445698 1.0000 120 chr2L:8361308-8361428 1.0000 120 chr3L:14657637-14657757 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fkh/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fkh.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.278 C 0.214 G 0.217 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.278 C 0.214 G 0.217 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DRYAAAYA MEME-1 width = 8 sites = 135 llr = 1003 E-value = 5.1e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 34:aaa:a pos.-specific C 1:6:::6: probability G 36:::::: matrix T 3:4:::4: bits 2.2 2.0 1.8 *** * 1.6 *** * Relative 1.3 *** * Entropy 1.1 ******* (10.7 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel AGCAAACA consensus GAT T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10845899-10846019 59 2.94e-05 AAATTCTATT AGCAAACA AATTTACTGA chr3R:10514796-10514916 9 2.94e-05 GCCAAATG GGCAAACA AATGCCAACG chr3R:20915883-20916003 61 2.94e-05 CAAAACACAA AGCAAACA AAATGAAATA chr3R:30012771-30012891 86 2.94e-05 GGCATTACAT GGCAAACA TGTCGATTCG chr2R:11646068-11646188 11 2.94e-05 CGGCGGAGCT GGCAAACA TACTCGGTTC chr3R:29077694-29077814 41 2.94e-05 ATTATGCTAA AGCAAACA CAATTTGTAA chr3R:13990196-13990316 93 2.94e-05 TACAGGGGTA GGCAAACA AAGTAAACAT chr3R:21066620-21066740 96 2.94e-05 AGCATAGAAA GGCAAACA TGTATTTTCA chr3R:15407244-15407364 1 2.94e-05 . AGCAAACA TTGCGGAGGG chr3R:23119990-23120110 16 2.94e-05 CAATTGGAAG AGCAAACA GCGCTTTAAT chr3L:19559306-19559426 25 2.94e-05 GCGACAGAAA GGCAAACA AAACTTTTGA chr2L:18556533-18556653 37 2.94e-05 GTTACCATAA GGCAAACA AATGAATATA chrX:1183336-1183456 95 2.94e-05 GGGGACAGTG AGCAAACA AACACACCTT chr2L:4375754-4375874 3 2.94e-05 TG GGCAAACA CAGACCGCCG chrX:6253884-6254004 62 4.67e-05 TCCACACATA TGCAAACA CTCGAAATTA chr2L:14398690-14398810 16 4.67e-05 GAGCTGTGTA TGCAAACA TTTGTTTTTC chr3L:17005081-17005201 110 4.67e-05 TTGAGACCAA TGCAAACA GAC chr3R:31271175-31271295 105 4.67e-05 TGAATAAACA TGCAAACA AATTACTT chr3R:20827109-20827229 69 4.67e-05 TGTTGCTCTG TGCAAACA AACCAACCCC chr3R:26934646-26934766 80 4.67e-05 GTGTGCGAAA TGCAAACA GTTGCCACAT chr3L:8834645-8834765 63 4.67e-05 TGGAAGTAAG TGCAAACA ATAAAAAAAG chr3R:28589302-28589422 89 4.67e-05 TTTATCTTTG TGCAAACA CGGGAAAGCA chr2R:12751569-12751689 92 4.67e-05 TAACATAAAA TGCAAACA CACACACGAT chr2R:18485739-18485859 17 4.67e-05 CAGACACACA TGCAAACA CACGGTCGCT chr3L:5180310-5180430 81 4.67e-05 GTGTCCCCAG TGCAAACA AAACGCCTAC chr2L:8361308-8361428 30 8.43e-05 ATCTTAATCA AACAAACA TTGTCGTTTC chr3R:20551623-20551743 35 8.43e-05 AATTGCGATA AACAAACA TTTATCAAAG chr3L:5141856-5141976 85 8.43e-05 AAATACGCAT GACAAACA AACCGCAAAA chr2R:18436202-18436322 68 8.43e-05 ACGAAGCCAA AACAAACA GAAATACACA chr2L:16540863-16540983 84 8.43e-05 AACGAGGAGA GACAAACA CAACTGTAAC chr3L:10341826-10341946 47 8.43e-05 GTGAGGCGTA GACAAACA TTGGCGAAAC chr3L:9024986-9025106 81 8.43e-05 TGCAAACGGC GACAAACA GCTGAAGAAA chrX:9885481-9885601 39 8.43e-05 CGAACATAAA GACAAACA TCATCGTACC chr3L:18866179-18866299 43 8.43e-05 AAATGCCATA AACAAACA CAAAAAATGG chr3R:31869712-31869832 112 8.43e-05 CGCATAGAAA AACAAACA T chr2L:18878552-18878672 93 8.43e-05 AAAATCAACA AACAAACA AAACTCGCCT chr2R:19631126-19631246 43 8.43e-05 ACAAACAACA AACAAACA ACAACTCGAT chrX:6547055-6547175 61 8.43e-05 GTGGCTTGTA AACAAACA AACGGATCTT chr3R:7524346-7524466 74 8.43e-05 AACTAGTGTA AACAAACA AATTGACGCG chr3R:28563690-28563810 81 8.43e-05 GAACGACAAC GACAAACA TGTCGAGATA chr3R:29724913-29725033 27 1.64e-04 GGCACACAGT GGTAAACA AACTATTATT chr2R:7729961-7730081 112 1.64e-04 TTAATTCGCG GGTAAACA C chrX:16917558-16917678 68 1.64e-04 CAAATGGCCT GGCAAATA TTGACTCCCG chr3R:11236164-11236284 71 1.64e-04 ACATGCACTT AGTAAACA GACAACAGCT chr3R:23302317-23302437 43 1.64e-04 AAACCTCTCA GGTAAACA ACTACAACGA chr2L:1931856-1931976 80 1.64e-04 TTTTTATTTA AGCAAATA TTATCGCGAC chr3R:27695167-27695287 76 1.64e-04 GGACCAGGAA AGTAAACA AAACATGGAA chr2R:18334335-18334455 103 1.64e-04 TTCACACCTA AGCAAATA ACTTAAACAT chr3R:30345616-30345736 77 1.64e-04 TAATTAGCTG AGTAAACA AAATACAGGG chr2R:15951878-15951998 59 1.64e-04 CGCTCGCATG GGTAAACA ATTATATACT chr2L:14396363-14396483 42 1.64e-04 AAGAGTCTCT GGCaaata aaaataaagt chr2R:18947669-18947789 26 1.64e-04 TGTGTACGAA AGCAAATA GAAAAGAGAG chr3R:18779587-18779707 55 1.64e-04 ATAATGCCAA AGCAAATA CTAGGGTGTC chr2R:7655302-7655422 61 1.64e-04 GCCTTAACAG GGTAAACA CAGCTGTTTT chr2R:6686969-6687089 33 1.64e-04 GCATAATTTG AGTAAACA AGCCAGCATA chrX:7228493-7228613 105 1.64e-04 GGGGACAGTA GGCAAATA AAACCAAA chr2L:7678750-7678870 52 1.64e-04 GAAATCTTTG GGCAAATA TTTGCCAATT chrX:16650196-16650316 100 1.64e-04 AAAGCTTTTT GGCAAATA TCAATGAAAA chr3R:18572989-18573109 66 1.64e-04 GGGTACAGAT GGTAAACA AACGGGGAAC chr2L:789143-789263 22 1.64e-04 CAGCTCAGAG GGTAAACA TGATAAGCCG chr3R:17803159-17803279 47 1.64e-04 GTTTCCGCCA AGTAAACA AAGTTGGACT chr3R:28569695-28569815 20 1.64e-04 GTTTGCGCAA AGCAAATA TTTTACAAAT chr3R:15354128-15354248 87 1.64e-04 AATAATAATG AGCAAATA ACACAGCTAG chr2L:21324500-21324620 64 1.99e-04 TATTCGCCAA CGCAAACA ACTTTTGCGT chr3L:7806988-7807108 9 1.99e-04 ATCGTAGA TACAAACA ACCGTTGTCC chr2R:22180446-22180566 42 1.99e-04 CTGAGATCTG TACAAACA CTTTAAACCG chrX:694496-694616 25 1.99e-04 ACATAAAATG TACAAACA TCCCCGTACC chr2R:8170196-8170316 36 1.99e-04 TATACTCCCG CGCAAACA AACGGGCACA chr3L:835587-835707 78 2.46e-04 ATAAAACATA TGTAAACA AAAGTGAAAT chr3L:8514845-8514965 37 2.46e-04 AATGAAAATA TGTAAACA AATGGAAGCT chr3L:16889684-16889804 85 2.46e-04 GTATTTTTAG TGCAAATA TACAAATTTG chr2L:10266660-10266780 65 2.46e-04 GTCGCACCGA TGTAAACA GAGTTTTTCG chr2L:5525876-5525996 66 2.46e-04 ACGCCTAAAA TGTAAACA TGTCGGATTT chr3L:12482417-12482537 71 2.46e-04 ATACGTTCGG TGTAAACA AACCGCAGTA chrX:18084083-18084203 74 2.46e-04 TTGGCGGCAC TGCAAATA CCCTTACCCG chr3R:27920955-27921075 97 2.46e-04 AAACGAAATT TGTAAACA TCCAATTGGT chr3R:13446171-13446291 10 2.46e-04 ATATGAGTA TGCAAATA GGCTTAAAGC chr2L:1502829-1502949 59 2.46e-04 CATGCTAAAA TGTAAACA ATGCAAATGA chr2R:13936513-13936633 84 2.46e-04 AAGGGCTCTG TGCAAATA AAGGAATTAG chr3R:22380054-22380174 88 2.46e-04 ACAAACCCAT TGTAAACA ACTTCGAAAA chr2R:11534297-11534417 53 2.46e-04 CTAAGTGCAG TGCAAATA TTTGCAGGCA chr3R:29049458-29049578 80 3.48e-04 GCACATCCAA AACAAATA AATAATTCGT chr3L:2439140-2439260 37 3.48e-04 aatcaacaaa aacaaata accgacaaaa chr2L:815884-816004 23 3.48e-04 TGCACCACAA AATAAACA AATCTTGCCA chr2L:11990807-11990927 112 3.48e-04 TCACTCTAGG GATAAACA A chr2R:9463904-9464024 17 3.48e-04 TTTACACATA AACAAATA TTTGTGCTCA chr2R:14526828-14526948 42 3.48e-04 ATGTATGTGT AACAAATA ACAACAAATT chr3R:9918957-9919077 1 3.48e-04 . AATAAACA GCCGCAAAAT chr2R:17693701-17693821 49 3.48e-04 TTTTGGGAAC GACAAATA TTGAAATTCG chr3L:22894982-22895102 104 3.48e-04 TAGGTAGATA AATAAACA ATAAATGCC chr2R:21303137-21303257 60 3.48e-04 TTGTTCAAAT AACAAATA AGGCAATCTG chrX:1901847-1901967 64 3.48e-04 AAACAATATA AATAAACA AAAAATAATC chr2R:10151183-10151303 76 3.48e-04 ATAGAGTGAG AATAAACA GAATTAAAAT chr2R:21480511-21480631 64 3.48e-04 GAGCGGGGGT AATAAACA AAACGTTTAC chr3R:9219532-9219652 81 3.48e-04 GAAATCTCTT AACAAATA TTTGGCGTAT chr3R:28563890-28564010 14 3.48e-04 TTTTTTCGCT GATAAACA AGATGGAGTT chrX:16828748-16828868 16 3.48e-04 TTAATAATAC AATAAACA TTTGATAAAC chr3L:15631189-15631309 74 3.48e-04 GTATGTGCTA AACAAATA CTGGCTGAAA chr3R:23126379-23126499 96 3.48e-04 ACTGTTCGTA AATAAACA ATTTGATATA chr3R:22669125-22669245 97 3.48e-04 ATGGCTGAAA AATAAACA TTGGGAAGGA chr2R:24133259-24133379 19 3.48e-04 CGTTATTATT AACAAATA TTACGCTATC chr3R:24601232-24601352 73 3.48e-04 GCTATCATTA AACAAATA ATAAATGCTT chr3R:18445578-18445698 76 4.03e-04 agggtagaac ggtAAATA CCTTCGCTTT chr3R:23121047-23121167 33 4.03e-04 ACTTCCACTA AGTAAATA ACTTTCAGTG chr3R:9056813-9056933 95 4.03e-04 TGGTTTGCTG GGTAAATA GTGAAACCAA chrX:7967644-7967764 39 4.03e-04 CCGTTTATTT GGTAAATA CGCAAGTGTA chr2R:18613048-18613168 71 4.03e-04 TGAAGAATTA AGTAAATA ATGGATATAT chr3R:25448855-25448975 80 4.03e-04 TAGAATGGTG AGTAAATA ATATTTAATT chr3L:13397759-13397879 52 4.03e-04 AAACCAGCTA GGTAAATA TCTCGGCCCA chr3R:31758926-31759046 38 4.03e-04 TTTTGACAGG GGTAAATA ATCGGGCTGG chr3R:11640057-11640177 54 4.03e-04 AAACAAAAAA GGTAAATA AAAGAGTGGG chr3L:7841721-7841841 29 4.03e-04 TGGCGGATAG GGTAAATA GACAAAGTAG chr2L:9189436-9189556 79 4.19e-04 AAGTCCAGTC CACAAACA GAAAGAATTT chr3L:1000097-1000217 29 4.19e-04 CGTAACTAAA CACAAACA CACATGCACA chr2L:106640-106760 79 4.19e-04 TTTGTTTTTT CACAAACA TCTGTTTATC chrX:19375599-19375719 71 5.14e-04 CAATGTAAAA CGCAAATA TTAACACGGC chr3R:22756432-22756552 15 5.14e-04 GGCCATATAA CGTAAACA GTTTTAAATT chr3R:12699845-12699965 14 5.14e-04 TGAGCTACTA TATAAACA AAGTGATAAG chrX:10364694-10364814 3 5.14e-04 CA TATAAACA GTACAGCGTC chr3L:11004140-11004260 63 5.14e-04 CTTGCGCTTG CGCAAATA CTAATAAAAT chr2R:21640440-21640560 55 5.14e-04 CTCGGCGCTT CGCAAATA ATACTCGTTC chr3R:19060318-19060438 81 5.14e-04 GAACTGAATG CGTAAACA CAATCGGGCC chrX:8714356-8714476 17 5.14e-04 AGTATCCAAA TACAAATA AAAATAAGCG chr3L:6958275-6958395 110 5.46e-04 CAGTTGGAAA TGtaaata aat chr3R:28597707-28597827 69 5.46e-04 GAGTAAATTG TGTAAATA TTTGCGCTCG chr3L:20449794-20449914 28 6.15e-04 CGGCGCCTTC GATAAATA TACACAAGCC chr3R:23178312-23178432 41 6.15e-04 CGGGGTATCT GATAAATA GGAACTGGCA chr3R:14032579-14032699 24 6.59e-04 CGCTCACGCA CACAAATA AAGAGAGCGG chr3L:15632767-15632887 49 6.59e-04 TGATTTGTTG CACAAATA TTGATCGTTG chr3R:30537063-30537183 112 7.24e-04 TGCTGGGGTA TATAAATA A chr2R:12034496-12034616 98 7.24e-04 TTCTCGCGTT TATAAATA GTTGAAGTTC chr2L:12030243-12030363 14 7.24e-04 AAACAAAACA TATAAATA TCTGACGTAG chr2L:10435992-10436112 24 7.24e-04 CCTTCACTAA CGTAAATA GAATCAATAG chr2R:17563528-17563648 71 7.24e-04 TCACACTTTT TATAAATA TTGATTTTTC chr3R:9516574-9516694 23 7.54e-04 GTGTAGCGTA CATAAATA TTTATCTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10845899-10846019 2.9e-05 58_[+1]_54 chr3R:10514796-10514916 2.9e-05 8_[+1]_104 chr3R:20915883-20916003 2.9e-05 60_[+1]_52 chr3R:30012771-30012891 2.9e-05 85_[+1]_27 chr2R:11646068-11646188 2.9e-05 10_[+1]_102 chr3R:29077694-29077814 2.9e-05 40_[+1]_72 chr3R:13990196-13990316 2.9e-05 92_[+1]_20 chr3R:21066620-21066740 2.9e-05 95_[+1]_17 chr3R:15407244-15407364 2.9e-05 [+1]_112 chr3R:23119990-23120110 2.9e-05 15_[+1]_97 chr3L:19559306-19559426 2.9e-05 24_[+1]_88 chr2L:18556533-18556653 2.9e-05 36_[+1]_76 chrX:1183336-1183456 2.9e-05 94_[+1]_18 chr2L:4375754-4375874 2.9e-05 2_[+1]_110 chrX:6253884-6254004 4.7e-05 61_[+1]_51 chr2L:14398690-14398810 4.7e-05 15_[+1]_97 chr3L:17005081-17005201 4.7e-05 109_[+1]_3 chr3R:31271175-31271295 4.7e-05 104_[+1]_8 chr3R:20827109-20827229 4.7e-05 68_[+1]_44 chr3R:26934646-26934766 4.7e-05 79_[+1]_33 chr3L:8834645-8834765 4.7e-05 62_[+1]_50 chr3R:28589302-28589422 4.7e-05 88_[+1]_24 chr2R:12751569-12751689 4.7e-05 91_[+1]_21 chr2R:18485739-18485859 4.7e-05 16_[+1]_96 chr3L:5180310-5180430 4.7e-05 80_[+1]_32 chr2L:8361308-8361428 8.4e-05 29_[+1]_83 chr3R:20551623-20551743 8.4e-05 34_[+1]_78 chr3L:5141856-5141976 8.4e-05 84_[+1]_28 chr2R:18436202-18436322 8.4e-05 67_[+1]_45 chr2L:16540863-16540983 8.4e-05 83_[+1]_29 chr3L:10341826-10341946 8.4e-05 46_[+1]_66 chr3L:9024986-9025106 8.4e-05 80_[+1]_32 chrX:9885481-9885601 8.4e-05 38_[+1]_74 chr3L:18866179-18866299 8.4e-05 42_[+1]_70 chr3R:31869712-31869832 8.4e-05 111_[+1]_1 chr2L:18878552-18878672 8.4e-05 92_[+1]_20 chr2R:19631126-19631246 8.4e-05 42_[+1]_70 chrX:6547055-6547175 8.4e-05 60_[+1]_52 chr3R:7524346-7524466 8.4e-05 73_[+1]_39 chr3R:28563690-28563810 8.4e-05 80_[+1]_32 chr3R:29724913-29725033 0.00016 26_[+1]_86 chr2R:7729961-7730081 0.00016 111_[+1]_1 chrX:16917558-16917678 0.00016 67_[+1]_45 chr3R:11236164-11236284 0.00016 70_[+1]_42 chr3R:23302317-23302437 0.00016 42_[+1]_70 chr2L:1931856-1931976 0.00016 79_[+1]_33 chr3R:27695167-27695287 0.00016 75_[+1]_37 chr2R:18334335-18334455 0.00016 102_[+1]_10 chr3R:30345616-30345736 0.00016 76_[+1]_36 chr2R:15951878-15951998 0.00016 58_[+1]_54 chr2L:14396363-14396483 0.00016 41_[+1]_71 chr2R:18947669-18947789 0.00016 25_[+1]_87 chr3R:18779587-18779707 0.00016 54_[+1]_58 chr2R:7655302-7655422 0.00016 60_[+1]_52 chr2R:6686969-6687089 0.00016 32_[+1]_80 chrX:7228493-7228613 0.00016 104_[+1]_8 chr2L:7678750-7678870 0.00016 51_[+1]_61 chrX:16650196-16650316 0.00016 99_[+1]_13 chr3R:18572989-18573109 0.00016 65_[+1]_47 chr2L:789143-789263 0.00016 21_[+1]_91 chr3R:17803159-17803279 0.00016 46_[+1]_66 chr3R:28569695-28569815 0.00016 19_[+1]_93 chr3R:15354128-15354248 0.00016 86_[+1]_26 chr2L:21324500-21324620 0.0002 63_[+1]_49 chr3L:7806988-7807108 0.0002 8_[+1]_104 chr2R:22180446-22180566 0.0002 41_[+1]_71 chrX:694496-694616 0.0002 24_[+1]_88 chr2R:8170196-8170316 0.0002 35_[+1]_77 chr3L:835587-835707 0.00025 77_[+1]_35 chr3L:8514845-8514965 0.00025 36_[+1]_76 chr3L:16889684-16889804 0.00025 84_[+1]_28 chr2L:10266660-10266780 0.00025 64_[+1]_48 chr2L:5525876-5525996 0.00025 65_[+1]_47 chr3L:12482417-12482537 0.00025 70_[+1]_42 chrX:18084083-18084203 0.00025 73_[+1]_39 chr3R:27920955-27921075 0.00025 96_[+1]_16 chr3R:13446171-13446291 0.00025 9_[+1]_103 chr2L:1502829-1502949 0.00025 58_[+1]_54 chr2R:13936513-13936633 0.00025 83_[+1]_29 chr3R:22380054-22380174 0.00025 87_[+1]_25 chr2R:11534297-11534417 0.00025 52_[+1]_60 chr3R:29049458-29049578 0.00035 79_[+1]_33 chr3L:2439140-2439260 0.00035 36_[+1]_76 chr2L:815884-816004 0.00035 22_[+1]_90 chr2L:11990807-11990927 0.00035 111_[+1]_1 chr2R:9463904-9464024 0.00035 16_[+1]_96 chr2R:14526828-14526948 0.00035 41_[+1]_71 chr3R:9918957-9919077 0.00035 [+1]_112 chr2R:17693701-17693821 0.00035 48_[+1]_64 chr3L:22894982-22895102 0.00035 103_[+1]_9 chr2R:21303137-21303257 0.00035 59_[+1]_53 chrX:1901847-1901967 0.00035 63_[+1]_49 chr2R:10151183-10151303 0.00035 75_[+1]_37 chr2R:21480511-21480631 0.00035 63_[+1]_49 chr3R:9219532-9219652 0.00035 80_[+1]_32 chr3R:28563890-28564010 0.00035 13_[+1]_99 chrX:16828748-16828868 0.00035 15_[+1]_97 chr3L:15631189-15631309 0.00035 73_[+1]_39 chr3R:23126379-23126499 0.00035 95_[+1]_17 chr3R:22669125-22669245 0.00035 96_[+1]_16 chr2R:24133259-24133379 0.00035 18_[+1]_94 chr3R:24601232-24601352 0.00035 72_[+1]_40 chr3R:18445578-18445698 0.0004 75_[+1]_37 chr3R:23121047-23121167 0.0004 32_[+1]_80 chr3R:9056813-9056933 0.0004 94_[+1]_18 chrX:7967644-7967764 0.0004 38_[+1]_74 chr2R:18613048-18613168 0.0004 70_[+1]_42 chr3R:25448855-25448975 0.0004 79_[+1]_33 chr3L:13397759-13397879 0.0004 51_[+1]_61 chr3R:31758926-31759046 0.0004 37_[+1]_75 chr3R:11640057-11640177 0.0004 53_[+1]_59 chr3L:7841721-7841841 0.0004 28_[+1]_84 chr2L:9189436-9189556 0.00042 78_[+1]_34 chr3L:1000097-1000217 0.00042 28_[+1]_84 chr2L:106640-106760 0.00042 78_[+1]_34 chrX:19375599-19375719 0.00051 70_[+1]_42 chr3R:22756432-22756552 0.00051 14_[+1]_98 chr3R:12699845-12699965 0.00051 13_[+1]_99 chrX:10364694-10364814 0.00051 2_[+1]_110 chr3L:11004140-11004260 0.00051 62_[+1]_50 chr2R:21640440-21640560 0.00051 54_[+1]_58 chr3R:19060318-19060438 0.00051 80_[+1]_32 chrX:8714356-8714476 0.00051 16_[+1]_96 chr3L:6958275-6958395 0.00055 109_[+1]_3 chr3R:28597707-28597827 0.00055 68_[+1]_44 chr3L:20449794-20449914 0.00062 27_[+1]_85 chr3R:23178312-23178432 0.00062 40_[+1]_72 chr3R:14032579-14032699 0.00066 23_[+1]_89 chr3L:15632767-15632887 0.00066 48_[+1]_64 chr3R:30537063-30537183 0.00072 111_[+1]_1 chr2R:12034496-12034616 0.00072 97_[+1]_15 chr2L:12030243-12030363 0.00072 13_[+1]_99 chr2L:10435992-10436112 0.00072 23_[+1]_89 chr2R:17563528-17563648 0.00072 70_[+1]_42 chr3R:9516574-9516694 0.00075 22_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DRYAAAYA width=8 seqs=135 chr3L:10845899-10846019 ( 59) AGCAAACA 1 chr3R:10514796-10514916 ( 9) GGCAAACA 1 chr3R:20915883-20916003 ( 61) AGCAAACA 1 chr3R:30012771-30012891 ( 86) GGCAAACA 1 chr2R:11646068-11646188 ( 11) GGCAAACA 1 chr3R:29077694-29077814 ( 41) AGCAAACA 1 chr3R:13990196-13990316 ( 93) GGCAAACA 1 chr3R:21066620-21066740 ( 96) GGCAAACA 1 chr3R:15407244-15407364 ( 1) AGCAAACA 1 chr3R:23119990-23120110 ( 16) AGCAAACA 1 chr3L:19559306-19559426 ( 25) GGCAAACA 1 chr2L:18556533-18556653 ( 37) GGCAAACA 1 chrX:1183336-1183456 ( 95) AGCAAACA 1 chr2L:4375754-4375874 ( 3) GGCAAACA 1 chrX:6253884-6254004 ( 62) TGCAAACA 1 chr2L:14398690-14398810 ( 16) TGCAAACA 1 chr3L:17005081-17005201 ( 110) TGCAAACA 1 chr3R:31271175-31271295 ( 105) TGCAAACA 1 chr3R:20827109-20827229 ( 69) TGCAAACA 1 chr3R:26934646-26934766 ( 80) TGCAAACA 1 chr3L:8834645-8834765 ( 63) TGCAAACA 1 chr3R:28589302-28589422 ( 89) TGCAAACA 1 chr2R:12751569-12751689 ( 92) TGCAAACA 1 chr2R:18485739-18485859 ( 17) TGCAAACA 1 chr3L:5180310-5180430 ( 81) TGCAAACA 1 chr2L:8361308-8361428 ( 30) AACAAACA 1 chr3R:20551623-20551743 ( 35) AACAAACA 1 chr3L:5141856-5141976 ( 85) GACAAACA 1 chr2R:18436202-18436322 ( 68) AACAAACA 1 chr2L:16540863-16540983 ( 84) GACAAACA 1 chr3L:10341826-10341946 ( 47) GACAAACA 1 chr3L:9024986-9025106 ( 81) GACAAACA 1 chrX:9885481-9885601 ( 39) GACAAACA 1 chr3L:18866179-18866299 ( 43) AACAAACA 1 chr3R:31869712-31869832 ( 112) AACAAACA 1 chr2L:18878552-18878672 ( 93) AACAAACA 1 chr2R:19631126-19631246 ( 43) AACAAACA 1 chrX:6547055-6547175 ( 61) AACAAACA 1 chr3R:7524346-7524466 ( 74) AACAAACA 1 chr3R:28563690-28563810 ( 81) GACAAACA 1 chr3R:29724913-29725033 ( 27) GGTAAACA 1 chr2R:7729961-7730081 ( 112) GGTAAACA 1 chrX:16917558-16917678 ( 68) GGCAAATA 1 chr3R:11236164-11236284 ( 71) AGTAAACA 1 chr3R:23302317-23302437 ( 43) GGTAAACA 1 chr2L:1931856-1931976 ( 80) AGCAAATA 1 chr3R:27695167-27695287 ( 76) AGTAAACA 1 chr2R:18334335-18334455 ( 103) AGCAAATA 1 chr3R:30345616-30345736 ( 77) AGTAAACA 1 chr2R:15951878-15951998 ( 59) GGTAAACA 1 chr2L:14396363-14396483 ( 42) GGCAAATA 1 chr2R:18947669-18947789 ( 26) AGCAAATA 1 chr3R:18779587-18779707 ( 55) AGCAAATA 1 chr2R:7655302-7655422 ( 61) GGTAAACA 1 chr2R:6686969-6687089 ( 33) AGTAAACA 1 chrX:7228493-7228613 ( 105) GGCAAATA 1 chr2L:7678750-7678870 ( 52) GGCAAATA 1 chrX:16650196-16650316 ( 100) GGCAAATA 1 chr3R:18572989-18573109 ( 66) GGTAAACA 1 chr2L:789143-789263 ( 22) GGTAAACA 1 chr3R:17803159-17803279 ( 47) AGTAAACA 1 chr3R:28569695-28569815 ( 20) AGCAAATA 1 chr3R:15354128-15354248 ( 87) AGCAAATA 1 chr2L:21324500-21324620 ( 64) CGCAAACA 1 chr3L:7806988-7807108 ( 9) TACAAACA 1 chr2R:22180446-22180566 ( 42) TACAAACA 1 chrX:694496-694616 ( 25) TACAAACA 1 chr2R:8170196-8170316 ( 36) CGCAAACA 1 chr3L:835587-835707 ( 78) TGTAAACA 1 chr3L:8514845-8514965 ( 37) TGTAAACA 1 chr3L:16889684-16889804 ( 85) TGCAAATA 1 chr2L:10266660-10266780 ( 65) TGTAAACA 1 chr2L:5525876-5525996 ( 66) TGTAAACA 1 chr3L:12482417-12482537 ( 71) TGTAAACA 1 chrX:18084083-18084203 ( 74) TGCAAATA 1 chr3R:27920955-27921075 ( 97) TGTAAACA 1 chr3R:13446171-13446291 ( 10) TGCAAATA 1 chr2L:1502829-1502949 ( 59) TGTAAACA 1 chr2R:13936513-13936633 ( 84) TGCAAATA 1 chr3R:22380054-22380174 ( 88) TGTAAACA 1 chr2R:11534297-11534417 ( 53) TGCAAATA 1 chr3R:29049458-29049578 ( 80) AACAAATA 1 chr3L:2439140-2439260 ( 37) AACAAATA 1 chr2L:815884-816004 ( 23) AATAAACA 1 chr2L:11990807-11990927 ( 112) GATAAACA 1 chr2R:9463904-9464024 ( 17) AACAAATA 1 chr2R:14526828-14526948 ( 42) AACAAATA 1 chr3R:9918957-9919077 ( 1) AATAAACA 1 chr2R:17693701-17693821 ( 49) GACAAATA 1 chr3L:22894982-22895102 ( 104) AATAAACA 1 chr2R:21303137-21303257 ( 60) AACAAATA 1 chrX:1901847-1901967 ( 64) AATAAACA 1 chr2R:10151183-10151303 ( 76) AATAAACA 1 chr2R:21480511-21480631 ( 64) AATAAACA 1 chr3R:9219532-9219652 ( 81) AACAAATA 1 chr3R:28563890-28564010 ( 14) GATAAACA 1 chrX:16828748-16828868 ( 16) AATAAACA 1 chr3L:15631189-15631309 ( 74) AACAAATA 1 chr3R:23126379-23126499 ( 96) AATAAACA 1 chr3R:22669125-22669245 ( 97) AATAAACA 1 chr2R:24133259-24133379 ( 19) AACAAATA 1 chr3R:24601232-24601352 ( 73) AACAAATA 1 chr3R:18445578-18445698 ( 76) GGTAAATA 1 chr3R:23121047-23121167 ( 33) AGTAAATA 1 chr3R:9056813-9056933 ( 95) GGTAAATA 1 chrX:7967644-7967764 ( 39) GGTAAATA 1 chr2R:18613048-18613168 ( 71) AGTAAATA 1 chr3R:25448855-25448975 ( 80) AGTAAATA 1 chr3L:13397759-13397879 ( 52) GGTAAATA 1 chr3R:31758926-31759046 ( 38) GGTAAATA 1 chr3R:11640057-11640177 ( 54) GGTAAATA 1 chr3L:7841721-7841841 ( 29) GGTAAATA 1 chr2L:9189436-9189556 ( 79) CACAAACA 1 chr3L:1000097-1000217 ( 29) CACAAACA 1 chr2L:106640-106760 ( 79) CACAAACA 1 chrX:19375599-19375719 ( 71) CGCAAATA 1 chr3R:22756432-22756552 ( 15) CGTAAACA 1 chr3R:12699845-12699965 ( 14) TATAAACA 1 chrX:10364694-10364814 ( 3) TATAAACA 1 chr3L:11004140-11004260 ( 63) CGCAAATA 1 chr2R:21640440-21640560 ( 55) CGCAAATA 1 chr3R:19060318-19060438 ( 81) CGTAAACA 1 chrX:8714356-8714476 ( 17) TACAAATA 1 chr3L:6958275-6958395 ( 110) TGTAAATA 1 chr3R:28597707-28597827 ( 69) TGTAAATA 1 chr3L:20449794-20449914 ( 28) GATAAATA 1 chr3R:23178312-23178432 ( 41) GATAAATA 1 chr3R:14032579-14032699 ( 24) CACAAATA 1 chr3L:15632767-15632887 ( 49) CACAAATA 1 chr3R:30537063-30537183 ( 112) TATAAATA 1 chr2R:12034496-12034616 ( 98) TATAAATA 1 chr2L:12030243-12030363 ( 14) TATAAATA 1 chr2L:10435992-10436112 ( 24) CGTAAATA 1 chr2R:17563528-17563648 ( 71) TATAAATA 1 chr3R:9516574-9516694 ( 23) CATAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.72248 E= 5.1e-063 33 -105 37 -13 53 -1372 147 -1372 -1372 147 -1372 49 185 -1372 -1372 -1372 185 -1372 -1372 -1372 185 -1372 -1372 -1372 -1372 152 -1372 40 185 -1372 -1372 -1372 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 135 E= 5.1e-063 0.348148 0.103704 0.281481 0.266667 0.400000 0.000000 0.600000 0.000000 0.000000 0.592593 0.000000 0.407407 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.614815 0.000000 0.385185 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DRYAAAYA MEME-1 regular expression -------------------------------------------------------------------------------- [AGT][GA][CT]AAA[CT]A -------------------------------------------------------------------------------- Time 8.27 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTRCH MEME-2 width = 8 sites = 164 llr = 1116 E-value = 2.2e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::5:3 pos.-specific C ::::::73 probability G :7:115:: matrix T a:a99:34 bits 2.2 2.0 1.8 * * 1.6 * * * Relative 1.3 * *** * Entropy 1.1 ***** * (9.8 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGTTTACT consensus A GTA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2439140-2439260 79 5.66e-05 GTTTCCACAG TGTTTGCT GGGCGAGCCG chr3L:14056969-14057089 96 5.66e-05 ATATTGTGTT TGTTTGCC ATTTCGGTGG chr2L:19412099-19412219 61 5.66e-05 AAAATAATGT TGTTTGCA TTCCTCTCGC chr2R:17109252-17109372 92 5.66e-05 ATCTGACAGC TGTTTGCT GTTTTTTCAT chr2R:17781888-17782008 113 5.66e-05 TTTTTGAATT TGTTTGCT chr2R:10018958-10019078 84 5.66e-05 TGACTTTTGA TGTTTGCC TGTGGGCAAC chr2R:14526828-14526948 18 5.66e-05 AATGTACATG TGTTTGCC GCCGCAATGT chr3R:22756432-22756552 40 5.66e-05 ATTACAAAAC TGTTTGCA CCCAGATTCC chr3R:9918957-9919077 80 5.66e-05 TTGTTGGCCA TGTTTGCC TGTATTTACT chr3R:25448855-25448975 108 5.66e-05 GCTGCGCAAA TGTTTGCA CAAAA chrX:13632812-13632932 73 5.66e-05 GTAGATGGGG TGTTTGCC TTGTTGTGCG chr3R:31758926-31759046 4 5.66e-05 CAG TGTTTGCC TTTGCATAAT chr2L:16530980-16531100 66 5.66e-05 TGTGTTTAGT TGTTTGCT TTTGTTGTTT chr2L:16540863-16540983 55 5.66e-05 TAGGAAGTTT TGTTTGCA GTGCGCACAG chr3L:6830509-6830629 70 5.66e-05 TTTTTATTAC TGTTTGCC CGCCCTGGCC chr3R:30006015-30006135 96 5.66e-05 CATCCGCAAT TGTTTGCA TTAGGTCTGG chr2L:5228804-5228924 73 5.66e-05 TTGCCGTTGT TGTTTGCA CACTCCACGC chr3L:19979759-19979879 42 5.66e-05 CCCTTATTTG TGTTTGCT TTTCTACTGC chr3L:16166640-16166760 44 5.66e-05 CTCTCGTCTG TGTTTGCT TTTTTTGGCA chr3R:5306259-5306379 98 5.66e-05 TATCTCTGTT TGTTTGCC TTGGCTTTCG chr3R:30062128-30062248 69 5.66e-05 CTTTCCGTGC TGTTTGCC AAACTAATCC chr3R:17965554-17965674 50 5.66e-05 ttgtttgttc tgtttgCC TTGCGGTTGC chr3R:27067504-27067624 15 5.66e-05 GTGAGAGTTT TGTTTGCA GTTCATCAAC chr3L:1140676-1140796 75 5.66e-05 CTGCCTGCGT TGTTTGCC CATTCGTTCA chr3L:11278517-11278637 14 5.66e-05 GTGCGAGGAG TGTTTGCT TATCTCGGCT chr3L:8684898-8685018 14 5.66e-05 TGCGCGGCTG TGTTTGCT TAACTGGCTG chr2R:17852675-17852795 52 5.66e-05 TCCAGGTGTG TGTTTGCA TACGAATTTT chr3R:17950059-17950179 105 5.66e-05 AAACTTGAAC TGTTTGCC TATCGGTA chr3R:28569906-28570026 103 5.66e-05 TTTACCAATT TGTTTGCT CGACTAATAA chr3R:28597707-28597827 11 5.66e-05 GTGTGTGGTG TGTTTGCC ATCGTTTTTG chr3R:9056813-9056933 3 1.29e-04 AG TGTTTACC TTAAGAATCC chr2L:5721028-5721148 48 1.29e-04 ATGGTGCGTT TGTTTACA TTCACAAAAG chr2R:15568849-15568969 6 1.29e-04 CACTT TGTTTACA AAACATTGCA chr2R:18602377-18602497 79 1.29e-04 TTTACTCCAG TGTTTACT CTACCCAAAT chr2R:14898315-14898435 79 1.29e-04 GCAACGACAT TGTTTACC TTTTCAGTTA chr3L:12116440-12116560 95 1.29e-04 CCAAATATCT TGTTTACC TATCCCACAT chr2L:9189436-9189556 7 1.29e-04 ATTTCT TGTTTACA TTTCGCTCTC chr2L:20968933-20969053 43 1.29e-04 GGCGGGCCAA TGTTTACA CACACGCTCA chr3R:28588522-28588642 67 1.29e-04 ATTGCGCGCG TGTTTACC ATAGAAAACA chr2L:10472363-10472483 27 1.29e-04 TACTTGTACG TGTTTACA AATTGTCTTG chr3R:22618400-22618520 32 1.29e-04 GGTTTTGGGT TGTTTACC TACCCAAACT chr3L:15632767-15632887 106 1.29e-04 ATATCTCTGC TGTTTACT GTTTTGC chr3L:15648038-15648158 98 1.29e-04 GGCCGAGTTT TGTTTACC AGTGAGAGGT chrX:10385022-10385142 61 1.29e-04 ATTCGTTTGG TGTTTACT TTAGGTAAAT chr3R:19056982-19057102 33 1.29e-04 AGCGGCAGCT TGTTTACC ATTCCCCCCC chr3L:139920-140040 65 1.29e-04 TTTACTTATG TGTTTACT TTCGGTGATG chr2R:25005695-25005815 64 1.29e-04 GGGGGGGGGC TGTTTACT TAGTTTCATC chr2R:24981173-24981293 70 1.29e-04 CGTTGCCAAG TGTTTACC CAGAACTTGA chr2R:10068587-10068707 95 1.29e-04 CGTCAACAAA TGTTTACA ATATTTAATT chr3R:10052839-10052959 6 1.29e-04 ACTTT TGTTTACA TTTTATGTTT chr2R:8170196-8170316 62 1.29e-04 CACTACTTTT TGTTTACA TTAAACTTCG chr2L:18878552-18878672 68 1.29e-04 CTCATTAAAA TGTTTACA GCGCTCAAAA chr2R:22635853-22635973 38 1.29e-04 TTTTTGGCCT TGTTTACC TTTTGCTGTG chrX:8714356-8714476 43 1.29e-04 CGGACAAGTT TGTTTACC GCGTTTTGTT chr3R:28550570-28550690 58 1.29e-04 TGTCTCTCTC TGTTTACA CGCCCAGTTT chrX:2738794-2738914 22 1.29e-04 TAAGTTGTTT TGTTTACC CGCAGCGATG chr3R:7524346-7524466 101 1.29e-04 GATTTATTTT TGTTTACA CGATCACCGA chr3R:10135221-10135341 91 1.29e-04 TCCTGTCATT TGTTTACT TTAGGAATTA chr3R:28548592-28548712 38 1.29e-04 TGGGTTTCAC TGTTTACA CACATTAGAG chr3R:17803159-17803279 67 1.29e-04 GTTGGACTTC TGTTTACA GAATAATCTA chr3L:10354943-10355063 64 1.29e-04 CCCGCGCGTT TGTTTACT TTGTCTAACT chrX:5621999-5622119 31 2.02e-04 CCTTCCAGCG TATTTGCT TTATCAATGA chr2L:11990807-11990927 89 2.02e-04 TGCACTGCAG TATTTGCA GACGGTCACT chr2R:11266010-11266130 84 2.02e-04 TCAACAACTT TATTTGCC ATTGAACAGG chr3L:6840034-6840154 79 2.02e-04 TTTAAATTAT TATTTGCC TTTGTGTTGC chr3R:14472711-14472831 66 2.02e-04 TATTTATTTG TATTTGCT TATCAGCGGC chr3R:27695167-27695287 22 2.02e-04 AAAAACGTTC TATTTGCA GTGTGACCAT chrX:16828748-16828868 93 2.02e-04 GAAAATCAAA TATTTGCT AAGCATTTCT chr3L:2433475-2433595 19 2.02e-04 ACTATACTAC TATTTGCC CACTTGAGAT chr2R:9950245-9950365 54 2.02e-04 ATTATTGATT TATTTGCT TAGCTGCTTT chr2L:10754756-10754876 54 2.02e-04 TTAATGCTAA TATTTGCC AGCTAATTTG chrX:10733228-10733348 13 2.02e-04 GCTGACGAAT TATTTGCC AAAGATATGA chrX:1183336-1183456 65 2.02e-04 CTAGACTGTT TATTTGCA CAGCGCCAAA chr2R:7729961-7730081 51 2.94e-04 AATCTATAAA TATTTACA TTCTAATTGT chrX:9500819-9500939 42 2.94e-04 ACGATTTGAA TATTTACA TAAACGATTC chr3L:409873-409993 44 2.94e-04 CCTGCTTACT TATTTACT TTTGTCTTCT chrX:17852616-17852736 19 2.94e-04 AATATTTATT TATTTACA TTTAATTTTT chr3R:14032579-14032699 50 2.94e-04 GGAGCCTCAC TATTTACT TTGATCACCA chr2L:14635384-14635504 55 2.94e-04 TGCTGTCAAA TATTTACT CAAGTGTTTC chr2R:18334335-18334455 5 2.94e-04 ATAA TATTTACC AAATCTAAGC chrX:18374570-18374690 54 2.94e-04 TAATGATTAA TATTTACA ATAATTTAAG chrX:20483298-20483418 64 2.94e-04 CTTGCTTATT TATTTACC GAGTgggcgg chr3L:9024986-9025106 61 2.94e-04 AAAGCTTAAA TATTTACA GTTGCAAACG chr3R:8890570-8890690 53 2.94e-04 TTGCTCACCT TATTTACA ATAGTTTATA chr3R:22380054-22380174 24 2.94e-04 CGATAACCAG TATTTACC GATGACGCTT chrX:16650196-16650316 71 2.94e-04 AAACTATTTA TATTTACA TAGCGTACAA chr3L:14657637-14657757 18 3.71e-04 CTGGCTGATT TGTTTGTT TTGGCCGCTG chr3R:30012771-30012891 43 3.71e-04 TGATAATGAA TGTTTGTA AATAAATAAC chrX:7204802-7204922 92 3.71e-04 CACACCTGTC TGTTTGTC GATCGCCGCT chr2R:10874272-10874392 112 3.71e-04 ATGGGAGCGC TGTTTGTA C chr3L:21201401-21201521 13 3.71e-04 GTAGTTTGTT TGTTTGTT TGTTTTCAGC chr3R:9516574-9516694 101 3.71e-04 ATTAATTGTT TGTTTGTC TGCTCTTAGC chr3L:9209752-9209872 60 3.71e-04 TGATTTCGAG TGTTTGTT TATCGGTTTA chr3R:14769144-14769264 15 3.71e-04 ATAGTTTAGT TGTTTGTC TTGCCATATA chr3R:28558890-28559010 34 3.71e-04 CGAAGTTGCT TGTTTGTT GTTTTTATGG chr2R:15601986-15602106 91 3.71e-04 CTTGAATGAA tgtttgta tgtgtgtgtg chr2L:18965406-18965526 25 3.71e-04 AGATTAGGTT TGTTTGTC CCGATTTATT chr3R:23747577-23747697 72 3.71e-04 CCATCGGCAT TGTTTGTT CCCTCCCCGA chr3R:18433058-18433178 112 3.71e-04 ATGTTGATAT TGTTTGTT T chr3R:16007286-16007406 34 3.71e-04 CGGCTCTTTC TGTTTGTT GTTGACTTGA chr3R:30537063-30537183 24 4.70e-04 AATCGAAATA TGTTTATA TAATTGAAAA chr2R:12034496-12034616 80 4.70e-04 ACTCGCACTT TGTTTATA TTCTCGCGTT chr2L:106640-106760 89 4.70e-04 CACAAACATC TGTTTATC GCCCTATCTG chr3R:23178312-23178432 66 4.70e-04 GCATACCAAT TGTTTATA GCTACCAGAC chr2R:21640440-21640560 32 4.70e-04 ATAACAACAT TGTTTATT TTGCGCTCGG chrX:18363577-18363697 49 4.70e-04 TGGATGGGCG TGTTTATC TAAGCGCTTG chr2R:22644643-22644763 79 4.70e-04 AACCGAGCGT TGTTTATC AACAACAAAG chrX:11439375-11439495 8 4.70e-04 CTTGTTT TGTTTATT ATTCGTGCGC chrX:6547055-6547175 1 4.70e-04 . TGTTTATA CGCCTATTTA chr2R:23402256-23402376 93 5.12e-04 GTGGCAGCGC TGTGTGCT GCAACGGTTT chrX:15496810-15496930 90 5.12e-04 TAGACGATTG TGTGTGCT GTGTGTATTT chr3R:13990196-13990316 25 5.12e-04 AGTGCGAGTA TGTGTGCA CGTTAAGCGC chr2R:15951878-15951998 76 5.12e-04 AATTATATAC TGTGTGCA CAAGTGTCTG chr3R:11236164-11236284 45 5.66e-04 GTTTAGCCAG TGTGTACA CACCACGCAC chr3L:6556376-6556496 63 5.66e-04 GCGCCACTCT TGTGTACA CTTTTTTTCT chr2L:14506320-14506440 40 5.66e-04 TTGAATCTAG TGTGTACT TAGGAACTAG chr3R:28569695-28569815 107 5.66e-04 CTCTACTCCG TGTGTACA CATGTA chr3R:31271175-31271295 47 7.07e-04 TTTTGGCCAG TATTTGTT TTACGTCTAC chr3R:25544098-25544218 68 7.07e-04 TGTGAAGTTT TATTTGTC AATCAACTGT chr3L:7349433-7349553 113 7.07e-04 GCAGAGTCTG TATTTGTA chr2R:18178602-18178722 99 7.07e-04 AGCTGCGAAC TATTTGTT CAGCAATTAA chr2R:18947669-18947789 88 7.07e-04 AAACAGTGTA TATTTGTA TTTGTTAAAC chr2L:7248297-7248417 59 7.07e-04 GGGCGTTCTC TATTTGTT GATCAATATT chr2L:7523693-7523813 8 7.07e-04 TGGCGTC TGTTGGCT CAGCTGCTGC chr2L:8361308-8361428 104 8.87e-04 GTCGACGTAC TATTTATT TTTTAGTGG chr3R:12383933-12384053 104 8.87e-04 GATATTTAAA TATTTATT ATTTGAAGA chrX:5768750-5768870 27 8.87e-04 TTTATAGTCA TGTTGACT CAATCCGAGT chr2L:11038276-11038396 4 8.87e-04 CAC TGTTGACT TTTTCCACTT chr3R:17945911-17946031 37 8.87e-04 TGTATGGCTT TATTTATT TTAGCCAAGT chr3L:8690944-8691064 45 8.87e-04 AGGCCACCGA TGTTGACA ATTCACACCC chr3R:21066620-21066740 63 8.87e-04 GGCTGCCTTT TGTTGACT TTCTACTTTG chr3L:19559306-19559426 45 8.87e-04 ACTTTTGACA TATTTATA TATCCATAAC chr3L:8873200-8873320 34 8.87e-04 TTTCGCCATT TGTTGACT TAATTGTTAT chr3L:18866179-18866299 88 8.87e-04 ACAAAGTAAA TATTTATA TTACAATCCG chr2L:18556533-18556653 60 8.87e-04 ATATATACAA TATTTATT TGAAATTCTG chrX:694496-694616 62 8.87e-04 CACTCTTGAT TGTTGACT CTTTTAAAAA chr3L:11686012-11686132 47 8.87e-04 TTCTGCATTA TATTTATT TAGGCACCGC chr3R:27920955-27921075 59 8.87e-04 tttctgtatt tatttata ttttttttta chr3R:24601232-24601352 103 8.87e-04 TTTGGCATAA TATTTATT TTGCGCGCCT chrX:7228493-7228613 25 8.87e-04 TCCTCGtttt tatttatt tttttttttt chr2L:815884-816004 102 9.63e-04 AGCACTCGAC TGTTTTCA AGCCAAGCCC chrX:10364694-10364814 44 9.63e-04 TTAGGTACTT TGTTTTCC TAGAGCAAAT chr3R:18779587-18779707 88 9.63e-04 TTTCGCCAGG TGTTTTCA TTTTATACGC chr2L:789143-789263 107 9.63e-04 ACCTTTTGCT TGTTTTCC AAATTA chr2R:24133259-24133379 57 9.79e-04 TCTTCTTGCT TGTTTGCG TTGACAAATC chr2R:17693701-17693821 81 1.03e-03 CTATTTTGCA TATGTGCT TTATAAAGCC chr3R:28563890-28564010 48 1.03e-03 TTAGGTTAAT TATGTGCT AAAGTGTGGG chrX:6708939-6709059 26 1.03e-03 TTTATTTTCG TATGTGCC TGTGTGTGTA chr3L:15631189-15631309 65 1.03e-03 GTACGTGTGG TATGTGCT AAACAAATAC chr3R:19060318-19060438 24 1.05e-03 CCCATTAAAT TGTTTACG TAATCCATTT chr2R:12751569-12751689 64 1.12e-03 TAAATACGGG TATGTACT ACGAAATCAA chr2R:10151183-10151303 36 1.18e-03 tgtgtgagtg tgtgtgtA ATTGCGCATA chr3L:7806988-7807108 66 1.31e-03 ACATATAATA TGTGTATA TAGCTACATT chr3L:16889684-16889804 72 1.31e-03 TCAAAGGCTT TGTGTATT TTTAGTGCAA chr2R:9404568-9404688 65 1.38e-03 AGACCCTCCC TATTGACT TATGATACGA chr2L:10435992-10436112 53 1.38e-03 CGCTTAAAAA TATTGACA TTGCATTTAG chr3R:14005245-14005365 62 1.38e-03 GCTCTCTGGC TATTGACC GAGCGCCGAA chr2R:11646068-11646188 93 1.53e-03 TCTTTCTCTT TATTTTCA CAGCTGGCGT chr3L:8514845-8514965 8 1.53e-03 ATTTTGA TATTTTCA AAATAAACAC chr3L:20537830-20537950 70 1.53e-03 GCTCCCAAGC TATTTTCA GCATTAATCA chr3L:1000097-1000217 59 1.53e-03 ATGGTTCTAC TGTTGGTT TTACTAAATT chr3R:6818336-6818456 15 1.55e-03 ATCATCTAAA TATTTGCG TTTATTTTGT chr2L:14398690-14398810 26 1.75e-03 TGCAAACATT TGTTTTTC GTCGCCGCAT chr3L:18002248-18002368 37 1.88e-03 TTGGTTTATC TATGTGTT TGAGTATCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2439140-2439260 5.7e-05 78_[+2]_34 chr3L:14056969-14057089 5.7e-05 95_[+2]_17 chr2L:19412099-19412219 5.7e-05 60_[+2]_52 chr2R:17109252-17109372 5.7e-05 91_[+2]_21 chr2R:17781888-17782008 5.7e-05 112_[+2] chr2R:10018958-10019078 5.7e-05 83_[+2]_29 chr2R:14526828-14526948 5.7e-05 17_[+2]_95 chr3R:22756432-22756552 5.7e-05 39_[+2]_73 chr3R:9918957-9919077 5.7e-05 79_[+2]_33 chr3R:25448855-25448975 5.7e-05 107_[+2]_5 chrX:13632812-13632932 5.7e-05 72_[+2]_40 chr3R:31758926-31759046 5.7e-05 3_[+2]_109 chr2L:16530980-16531100 5.7e-05 65_[+2]_47 chr2L:16540863-16540983 5.7e-05 54_[+2]_58 chr3L:6830509-6830629 5.7e-05 69_[+2]_43 chr3R:30006015-30006135 5.7e-05 95_[+2]_17 chr2L:5228804-5228924 5.7e-05 72_[+2]_40 chr3L:19979759-19979879 5.7e-05 41_[+2]_71 chr3L:16166640-16166760 5.7e-05 43_[+2]_69 chr3R:5306259-5306379 5.7e-05 97_[+2]_15 chr3R:30062128-30062248 5.7e-05 68_[+2]_44 chr3R:17965554-17965674 5.7e-05 49_[+2]_63 chr3R:27067504-27067624 5.7e-05 14_[+2]_98 chr3L:1140676-1140796 5.7e-05 74_[+2]_38 chr3L:11278517-11278637 5.7e-05 13_[+2]_99 chr3L:8684898-8685018 5.7e-05 13_[+2]_99 chr2R:17852675-17852795 5.7e-05 51_[+2]_61 chr3R:17950059-17950179 5.7e-05 104_[+2]_8 chr3R:28569906-28570026 5.7e-05 102_[+2]_10 chr3R:28597707-28597827 5.7e-05 10_[+2]_102 chr3R:9056813-9056933 0.00013 2_[+2]_110 chr2L:5721028-5721148 0.00013 47_[+2]_65 chr2R:15568849-15568969 0.00013 5_[+2]_107 chr2R:18602377-18602497 0.00013 78_[+2]_34 chr2R:14898315-14898435 0.00013 78_[+2]_34 chr3L:12116440-12116560 0.00013 94_[+2]_18 chr2L:9189436-9189556 0.00013 6_[+2]_106 chr2L:20968933-20969053 0.00013 42_[+2]_70 chr3R:28588522-28588642 0.00013 66_[+2]_46 chr2L:10472363-10472483 0.00013 26_[+2]_86 chr3R:22618400-22618520 0.00013 31_[+2]_81 chr3L:15632767-15632887 0.00013 105_[+2]_7 chr3L:15648038-15648158 0.00013 97_[+2]_15 chrX:10385022-10385142 0.00013 60_[+2]_52 chr3R:19056982-19057102 0.00013 32_[+2]_80 chr3L:139920-140040 0.00013 64_[+2]_48 chr2R:25005695-25005815 0.00013 63_[+2]_49 chr2R:24981173-24981293 0.00013 69_[+2]_43 chr2R:10068587-10068707 0.00013 94_[+2]_18 chr3R:10052839-10052959 0.00013 5_[+2]_107 chr2R:8170196-8170316 0.00013 61_[+2]_51 chr2L:18878552-18878672 0.00013 67_[+2]_45 chr2R:22635853-22635973 0.00013 37_[+2]_75 chrX:8714356-8714476 0.00013 42_[+2]_70 chr3R:28550570-28550690 0.00013 57_[+2]_55 chrX:2738794-2738914 0.00013 21_[+2]_91 chr3R:7524346-7524466 0.00013 100_[+2]_12 chr3R:10135221-10135341 0.00013 90_[+2]_22 chr3R:28548592-28548712 0.00013 37_[+2]_75 chr3R:17803159-17803279 0.00013 66_[+2]_46 chr3L:10354943-10355063 0.00013 63_[+2]_49 chrX:5621999-5622119 0.0002 30_[+2]_82 chr2L:11990807-11990927 0.0002 88_[+2]_24 chr2R:11266010-11266130 0.0002 83_[+2]_29 chr3L:6840034-6840154 0.0002 78_[+2]_34 chr3R:14472711-14472831 0.0002 65_[+2]_47 chr3R:27695167-27695287 0.0002 21_[+2]_91 chrX:16828748-16828868 0.0002 92_[+2]_20 chr3L:2433475-2433595 0.0002 18_[+2]_94 chr2R:9950245-9950365 0.0002 53_[+2]_59 chr2L:10754756-10754876 0.0002 53_[+2]_59 chrX:10733228-10733348 0.0002 12_[+2]_100 chrX:1183336-1183456 0.0002 64_[+2]_48 chr2R:7729961-7730081 0.00029 50_[+2]_62 chrX:9500819-9500939 0.00029 41_[+2]_71 chr3L:409873-409993 0.00029 43_[+2]_69 chrX:17852616-17852736 0.00029 18_[+2]_94 chr3R:14032579-14032699 0.00029 49_[+2]_63 chr2L:14635384-14635504 0.00029 54_[+2]_58 chr2R:18334335-18334455 0.00029 4_[+2]_108 chrX:18374570-18374690 0.00029 53_[+2]_59 chrX:20483298-20483418 0.00029 63_[+2]_49 chr3L:9024986-9025106 0.00029 60_[+2]_52 chr3R:8890570-8890690 0.00029 52_[+2]_60 chr3R:22380054-22380174 0.00029 23_[+2]_89 chrX:16650196-16650316 0.00029 70_[+2]_42 chr3L:14657637-14657757 0.00037 17_[+2]_95 chr3R:30012771-30012891 0.00037 42_[+2]_70 chrX:7204802-7204922 0.00037 91_[+2]_21 chr2R:10874272-10874392 0.00037 111_[+2]_1 chr3L:21201401-21201521 0.00037 12_[+2]_100 chr3R:9516574-9516694 0.00037 100_[+2]_12 chr3L:9209752-9209872 0.00037 59_[+2]_53 chr3R:14769144-14769264 0.00037 14_[+2]_98 chr3R:28558890-28559010 0.00037 33_[+2]_79 chr2R:15601986-15602106 0.00037 90_[+2]_22 chr2L:18965406-18965526 0.00037 24_[+2]_88 chr3R:23747577-23747697 0.00037 71_[+2]_41 chr3R:18433058-18433178 0.00037 111_[+2]_1 chr3R:16007286-16007406 0.00037 33_[+2]_79 chr3R:30537063-30537183 0.00047 23_[+2]_89 chr2R:12034496-12034616 0.00047 79_[+2]_33 chr2L:106640-106760 0.00047 88_[+2]_24 chr3R:23178312-23178432 0.00047 65_[+2]_47 chr2R:21640440-21640560 0.00047 31_[+2]_81 chrX:18363577-18363697 0.00047 48_[+2]_64 chr2R:22644643-22644763 0.00047 78_[+2]_34 chrX:11439375-11439495 0.00047 7_[+2]_105 chrX:6547055-6547175 0.00047 [+2]_112 chr2R:23402256-23402376 0.00051 92_[+2]_20 chrX:15496810-15496930 0.00051 89_[+2]_23 chr3R:13990196-13990316 0.00051 24_[+2]_88 chr2R:15951878-15951998 0.00051 75_[+2]_37 chr3R:11236164-11236284 0.00057 44_[+2]_68 chr3L:6556376-6556496 0.00057 62_[+2]_50 chr2L:14506320-14506440 0.00057 39_[+2]_73 chr3R:28569695-28569815 0.00057 106_[+2]_6 chr3R:31271175-31271295 0.00071 46_[+2]_66 chr3R:25544098-25544218 0.00071 67_[+2]_45 chr3L:7349433-7349553 0.00071 112_[+2] chr2R:18178602-18178722 0.00071 98_[+2]_14 chr2R:18947669-18947789 0.00071 87_[+2]_25 chr2L:7248297-7248417 0.00071 58_[+2]_54 chr2L:7523693-7523813 0.00071 7_[+2]_105 chr2L:8361308-8361428 0.00089 103_[+2]_9 chr3R:12383933-12384053 0.00089 103_[+2]_9 chrX:5768750-5768870 0.00089 26_[+2]_86 chr2L:11038276-11038396 0.00089 3_[+2]_109 chr3R:17945911-17946031 0.00089 36_[+2]_76 chr3L:8690944-8691064 0.00089 44_[+2]_68 chr3R:21066620-21066740 0.00089 62_[+2]_50 chr3L:19559306-19559426 0.00089 44_[+2]_68 chr3L:8873200-8873320 0.00089 33_[+2]_79 chr3L:18866179-18866299 0.00089 87_[+2]_25 chr2L:18556533-18556653 0.00089 59_[+2]_53 chrX:694496-694616 0.00089 61_[+2]_51 chr3L:11686012-11686132 0.00089 46_[+2]_66 chr3R:27920955-27921075 0.00089 58_[+2]_54 chr3R:24601232-24601352 0.00089 102_[+2]_10 chrX:7228493-7228613 0.00089 24_[+2]_88 chr2L:815884-816004 0.00096 101_[+2]_11 chrX:10364694-10364814 0.00096 43_[+2]_69 chr3R:18779587-18779707 0.00096 87_[+2]_25 chr2L:789143-789263 0.00096 106_[+2]_6 chr2R:24133259-24133379 0.00098 56_[+2]_56 chr2R:17693701-17693821 0.001 80_[+2]_32 chr3R:28563890-28564010 0.001 47_[+2]_65 chrX:6708939-6709059 0.001 25_[+2]_87 chr3L:15631189-15631309 0.001 64_[+2]_48 chr3R:19060318-19060438 0.0011 23_[+2]_89 chr2R:12751569-12751689 0.0011 63_[+2]_49 chr2R:10151183-10151303 0.0012 35_[+2]_77 chr3L:7806988-7807108 0.0013 65_[+2]_47 chr3L:16889684-16889804 0.0013 71_[+2]_41 chr2R:9404568-9404688 0.0014 64_[+2]_48 chr2L:10435992-10436112 0.0014 52_[+2]_60 chr3R:14005245-14005365 0.0014 61_[+2]_51 chr2R:11646068-11646188 0.0015 92_[+2]_20 chr3L:8514845-8514965 0.0015 7_[+2]_105 chr3L:20537830-20537950 0.0015 69_[+2]_43 chr3L:1000097-1000217 0.0015 58_[+2]_54 chr3R:6818336-6818456 0.0016 14_[+2]_98 chr2L:14398690-14398810 0.0018 25_[+2]_87 chr3L:18002248-18002368 0.0019 36_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTRCH width=8 seqs=164 chr3L:2439140-2439260 ( 79) TGTTTGCT 1 chr3L:14056969-14057089 ( 96) TGTTTGCC 1 chr2L:19412099-19412219 ( 61) TGTTTGCA 1 chr2R:17109252-17109372 ( 92) TGTTTGCT 1 chr2R:17781888-17782008 ( 113) TGTTTGCT 1 chr2R:10018958-10019078 ( 84) TGTTTGCC 1 chr2R:14526828-14526948 ( 18) TGTTTGCC 1 chr3R:22756432-22756552 ( 40) TGTTTGCA 1 chr3R:9918957-9919077 ( 80) TGTTTGCC 1 chr3R:25448855-25448975 ( 108) TGTTTGCA 1 chrX:13632812-13632932 ( 73) TGTTTGCC 1 chr3R:31758926-31759046 ( 4) TGTTTGCC 1 chr2L:16530980-16531100 ( 66) TGTTTGCT 1 chr2L:16540863-16540983 ( 55) TGTTTGCA 1 chr3L:6830509-6830629 ( 70) TGTTTGCC 1 chr3R:30006015-30006135 ( 96) TGTTTGCA 1 chr2L:5228804-5228924 ( 73) TGTTTGCA 1 chr3L:19979759-19979879 ( 42) TGTTTGCT 1 chr3L:16166640-16166760 ( 44) TGTTTGCT 1 chr3R:5306259-5306379 ( 98) TGTTTGCC 1 chr3R:30062128-30062248 ( 69) TGTTTGCC 1 chr3R:17965554-17965674 ( 50) TGTTTGCC 1 chr3R:27067504-27067624 ( 15) TGTTTGCA 1 chr3L:1140676-1140796 ( 75) TGTTTGCC 1 chr3L:11278517-11278637 ( 14) TGTTTGCT 1 chr3L:8684898-8685018 ( 14) TGTTTGCT 1 chr2R:17852675-17852795 ( 52) TGTTTGCA 1 chr3R:17950059-17950179 ( 105) TGTTTGCC 1 chr3R:28569906-28570026 ( 103) TGTTTGCT 1 chr3R:28597707-28597827 ( 11) TGTTTGCC 1 chr3R:9056813-9056933 ( 3) TGTTTACC 1 chr2L:5721028-5721148 ( 48) TGTTTACA 1 chr2R:15568849-15568969 ( 6) TGTTTACA 1 chr2R:18602377-18602497 ( 79) TGTTTACT 1 chr2R:14898315-14898435 ( 79) TGTTTACC 1 chr3L:12116440-12116560 ( 95) TGTTTACC 1 chr2L:9189436-9189556 ( 7) TGTTTACA 1 chr2L:20968933-20969053 ( 43) TGTTTACA 1 chr3R:28588522-28588642 ( 67) TGTTTACC 1 chr2L:10472363-10472483 ( 27) TGTTTACA 1 chr3R:22618400-22618520 ( 32) TGTTTACC 1 chr3L:15632767-15632887 ( 106) TGTTTACT 1 chr3L:15648038-15648158 ( 98) TGTTTACC 1 chrX:10385022-10385142 ( 61) TGTTTACT 1 chr3R:19056982-19057102 ( 33) TGTTTACC 1 chr3L:139920-140040 ( 65) TGTTTACT 1 chr2R:25005695-25005815 ( 64) TGTTTACT 1 chr2R:24981173-24981293 ( 70) TGTTTACC 1 chr2R:10068587-10068707 ( 95) TGTTTACA 1 chr3R:10052839-10052959 ( 6) TGTTTACA 1 chr2R:8170196-8170316 ( 62) TGTTTACA 1 chr2L:18878552-18878672 ( 68) TGTTTACA 1 chr2R:22635853-22635973 ( 38) TGTTTACC 1 chrX:8714356-8714476 ( 43) TGTTTACC 1 chr3R:28550570-28550690 ( 58) TGTTTACA 1 chrX:2738794-2738914 ( 22) TGTTTACC 1 chr3R:7524346-7524466 ( 101) TGTTTACA 1 chr3R:10135221-10135341 ( 91) TGTTTACT 1 chr3R:28548592-28548712 ( 38) TGTTTACA 1 chr3R:17803159-17803279 ( 67) TGTTTACA 1 chr3L:10354943-10355063 ( 64) TGTTTACT 1 chrX:5621999-5622119 ( 31) TATTTGCT 1 chr2L:11990807-11990927 ( 89) TATTTGCA 1 chr2R:11266010-11266130 ( 84) TATTTGCC 1 chr3L:6840034-6840154 ( 79) TATTTGCC 1 chr3R:14472711-14472831 ( 66) TATTTGCT 1 chr3R:27695167-27695287 ( 22) TATTTGCA 1 chrX:16828748-16828868 ( 93) TATTTGCT 1 chr3L:2433475-2433595 ( 19) TATTTGCC 1 chr2R:9950245-9950365 ( 54) TATTTGCT 1 chr2L:10754756-10754876 ( 54) TATTTGCC 1 chrX:10733228-10733348 ( 13) TATTTGCC 1 chrX:1183336-1183456 ( 65) TATTTGCA 1 chr2R:7729961-7730081 ( 51) TATTTACA 1 chrX:9500819-9500939 ( 42) TATTTACA 1 chr3L:409873-409993 ( 44) TATTTACT 1 chrX:17852616-17852736 ( 19) TATTTACA 1 chr3R:14032579-14032699 ( 50) TATTTACT 1 chr2L:14635384-14635504 ( 55) TATTTACT 1 chr2R:18334335-18334455 ( 5) TATTTACC 1 chrX:18374570-18374690 ( 54) TATTTACA 1 chrX:20483298-20483418 ( 64) TATTTACC 1 chr3L:9024986-9025106 ( 61) TATTTACA 1 chr3R:8890570-8890690 ( 53) TATTTACA 1 chr3R:22380054-22380174 ( 24) TATTTACC 1 chrX:16650196-16650316 ( 71) TATTTACA 1 chr3L:14657637-14657757 ( 18) TGTTTGTT 1 chr3R:30012771-30012891 ( 43) TGTTTGTA 1 chrX:7204802-7204922 ( 92) TGTTTGTC 1 chr2R:10874272-10874392 ( 112) TGTTTGTA 1 chr3L:21201401-21201521 ( 13) TGTTTGTT 1 chr3R:9516574-9516694 ( 101) TGTTTGTC 1 chr3L:9209752-9209872 ( 60) TGTTTGTT 1 chr3R:14769144-14769264 ( 15) TGTTTGTC 1 chr3R:28558890-28559010 ( 34) TGTTTGTT 1 chr2R:15601986-15602106 ( 91) TGTTTGTA 1 chr2L:18965406-18965526 ( 25) TGTTTGTC 1 chr3R:23747577-23747697 ( 72) TGTTTGTT 1 chr3R:18433058-18433178 ( 112) TGTTTGTT 1 chr3R:16007286-16007406 ( 34) TGTTTGTT 1 chr3R:30537063-30537183 ( 24) TGTTTATA 1 chr2R:12034496-12034616 ( 80) TGTTTATA 1 chr2L:106640-106760 ( 89) TGTTTATC 1 chr3R:23178312-23178432 ( 66) TGTTTATA 1 chr2R:21640440-21640560 ( 32) TGTTTATT 1 chrX:18363577-18363697 ( 49) TGTTTATC 1 chr2R:22644643-22644763 ( 79) TGTTTATC 1 chrX:11439375-11439495 ( 8) TGTTTATT 1 chrX:6547055-6547175 ( 1) TGTTTATA 1 chr2R:23402256-23402376 ( 93) TGTGTGCT 1 chrX:15496810-15496930 ( 90) TGTGTGCT 1 chr3R:13990196-13990316 ( 25) TGTGTGCA 1 chr2R:15951878-15951998 ( 76) TGTGTGCA 1 chr3R:11236164-11236284 ( 45) TGTGTACA 1 chr3L:6556376-6556496 ( 63) TGTGTACA 1 chr2L:14506320-14506440 ( 40) TGTGTACT 1 chr3R:28569695-28569815 ( 107) TGTGTACA 1 chr3R:31271175-31271295 ( 47) TATTTGTT 1 chr3R:25544098-25544218 ( 68) TATTTGTC 1 chr3L:7349433-7349553 ( 113) TATTTGTA 1 chr2R:18178602-18178722 ( 99) TATTTGTT 1 chr2R:18947669-18947789 ( 88) TATTTGTA 1 chr2L:7248297-7248417 ( 59) TATTTGTT 1 chr2L:7523693-7523813 ( 8) TGTTGGCT 1 chr2L:8361308-8361428 ( 104) TATTTATT 1 chr3R:12383933-12384053 ( 104) TATTTATT 1 chrX:5768750-5768870 ( 27) TGTTGACT 1 chr2L:11038276-11038396 ( 4) TGTTGACT 1 chr3R:17945911-17946031 ( 37) TATTTATT 1 chr3L:8690944-8691064 ( 45) TGTTGACA 1 chr3R:21066620-21066740 ( 63) TGTTGACT 1 chr3L:19559306-19559426 ( 45) TATTTATA 1 chr3L:8873200-8873320 ( 34) TGTTGACT 1 chr3L:18866179-18866299 ( 88) TATTTATA 1 chr2L:18556533-18556653 ( 60) TATTTATT 1 chrX:694496-694616 ( 62) TGTTGACT 1 chr3L:11686012-11686132 ( 47) TATTTATT 1 chr3R:27920955-27921075 ( 59) TATTTATA 1 chr3R:24601232-24601352 ( 103) TATTTATT 1 chrX:7228493-7228613 ( 25) TATTTATT 1 chr2L:815884-816004 ( 102) TGTTTTCA 1 chrX:10364694-10364814 ( 44) TGTTTTCC 1 chr3R:18779587-18779707 ( 88) TGTTTTCA 1 chr2L:789143-789263 ( 107) TGTTTTCC 1 chr2R:24133259-24133379 ( 57) TGTTTGCG 1 chr2R:17693701-17693821 ( 81) TATGTGCT 1 chr3R:28563890-28564010 ( 48) TATGTGCT 1 chrX:6708939-6709059 ( 26) TATGTGCC 1 chr3L:15631189-15631309 ( 65) TATGTGCT 1 chr3R:19060318-19060438 ( 24) TGTTTACG 1 chr2R:12751569-12751689 ( 64) TATGTACT 1 chr2R:10151183-10151303 ( 36) TGTGTGTA 1 chr3L:7806988-7807108 ( 66) TGTGTATA 1 chr3L:16889684-16889804 ( 72) TGTGTATT 1 chr2R:9404568-9404688 ( 65) TATTGACT 1 chr2L:10435992-10436112 ( 53) TATTGACA 1 chr3R:14005245-14005365 ( 62) TATTGACC 1 chr2R:11646068-11646188 ( 93) TATTTTCA 1 chr3L:8514845-8514965 ( 8) TATTTTCA 1 chr3L:20537830-20537950 ( 70) TATTTTCA 1 chr3L:1000097-1000217 ( 59) TGTTGGTT 1 chr3R:6818336-6818456 ( 15) TATTTGCG 1 chr2L:14398690-14398810 ( 26) TGTTTTTC 1 chr3L:18002248-18002368 ( 37) TATGTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.38935 E= 2.2e-055 -1400 -1400 -1400 178 25 -1400 163 -1400 -1400 -1400 -1400 178 -1400 -1400 -107 162 -1400 -1400 -169 168 81 -1400 109 -258 -1400 176 -1400 -8 32 36 -357 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 164 E= 2.2e-055 0.000000 0.000000 0.000000 1.000000 0.329268 0.000000 0.670732 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.103659 0.896341 0.000000 0.000000 0.067073 0.932927 0.487805 0.000000 0.463415 0.048780 0.000000 0.725610 0.000000 0.274390 0.347561 0.274390 0.018293 0.359756 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCH MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]TTT[AG][CT][TAC] -------------------------------------------------------------------------------- Time 14.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GGMGGGGG MEME-3 width = 8 sites = 25 llr = 242 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::4::::: pos.-specific C ::4:2:2: probability G aa2a7a8a matrix T ::::1::: bits 2.2 ** * * * 2.0 ** * * * 1.8 ** * * * 1.6 ** * * * Relative 1.3 ** * *** Entropy 1.1 ** ***** (14.0 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGGG consensus C C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7967644-7967764 79 1.11e-05 GGTACAGGGT GGAGGGGG CAAAGTAAAA chr3L:6840034-6840154 113 1.11e-05 TAACTTGGCA GGCGGGGG chr2R:12034496-12034616 23 1.11e-05 TCCCCGGTGT GGCGGGGG TGGGAATTCA chr2L:12030243-12030363 84 1.11e-05 CGTCGACTGC GGCGGGGG TGATCTAATA chrX:20483298-20483418 113 1.11e-05 tggggtgatg ggaggggg chr3L:11278517-11278637 80 1.11e-05 CACGGTATGG GGCGGGGG GGCGTGCCAG chr2R:18485739-18485859 95 1.11e-05 GTGGACGGGG GGCGGGGG CGTCAGCGAC chrX:11439375-11439495 62 1.11e-05 GTTACGGGGG GGAGGGGG GAGTGGCGGA chrX:16596533-16596653 40 1.11e-05 AACGTATTTT GGAGGGGG GGAGAGGAGA chr2R:11534297-11534417 12 1.11e-05 CGTCCAAACG GGAGGGGG GGTCGGCCAA chr2R:25005695-25005815 55 1.61e-05 GTGTGAAAGG GGGGGGGG CTGTTTACTT chr3L:10341826-10341946 7 1.61e-05 AGAATG GGGGGGGG GCTTGTCTTT chr2R:16591609-16591729 107 2.71e-05 GGTGTCGACT GGCGGGCG GTTCAA chrX:18363577-18363697 23 2.71e-05 GTCGTGTGTG GGCGGGCG TGTGGTGGTG chr3L:10838010-10838130 21 2.71e-05 CGGAGACGAT GGAGGGCG AAGATTTGGA chr3R:31869712-31869832 34 2.71e-05 TGAGCGGTCG GGCGGGCG GTAAAGTAAA chr3R:15407244-15407364 48 3.81e-05 TCCGCCGGCC GGAGCGGG AACAAACGAA chr2R:10068587-10068707 4 3.81e-05 TCC GGCGCGGG ATTGGTGTCC chrX:774492-774612 59 3.81e-05 CACTGCAGTG GGAGCGGG ACGGTGTATC chr2R:15951878-15951998 98 4.29e-05 TGTCTGGAGA GGGGGGCG ATCCGAATCC chr2L:7248297-7248417 46 4.29e-05 TGGCTCCAAA GGGGGGCG TTCTCTATTT chr3R:28563890-28564010 83 4.77e-05 ACGAGAAAAG GGGGCGGG GAACGGGTGT chr3R:30012771-30012891 2 6.27e-05 A GGAGTGGG AGCGCTTATT chrX:5621999-5622119 107 6.27e-05 ATGCTGTGTG GGAGTGGG AGGGAG chr3L:20537830-20537950 38 6.27e-05 ATCGGCTTTT GGAGTGGG TACAAGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7967644-7967764 1.1e-05 78_[+3]_34 chr3L:6840034-6840154 1.1e-05 112_[+3] chr2R:12034496-12034616 1.1e-05 22_[+3]_90 chr2L:12030243-12030363 1.1e-05 83_[+3]_29 chrX:20483298-20483418 1.1e-05 112_[+3] chr3L:11278517-11278637 1.1e-05 79_[+3]_33 chr2R:18485739-18485859 1.1e-05 94_[+3]_18 chrX:11439375-11439495 1.1e-05 61_[+3]_51 chrX:16596533-16596653 1.1e-05 39_[+3]_73 chr2R:11534297-11534417 1.1e-05 11_[+3]_101 chr2R:25005695-25005815 1.6e-05 54_[+3]_58 chr3L:10341826-10341946 1.6e-05 6_[+3]_106 chr2R:16591609-16591729 2.7e-05 106_[+3]_6 chrX:18363577-18363697 2.7e-05 22_[+3]_90 chr3L:10838010-10838130 2.7e-05 20_[+3]_92 chr3R:31869712-31869832 2.7e-05 33_[+3]_79 chr3R:15407244-15407364 3.8e-05 47_[+3]_65 chr2R:10068587-10068707 3.8e-05 3_[+3]_109 chrX:774492-774612 3.8e-05 58_[+3]_54 chr2R:15951878-15951998 4.3e-05 97_[+3]_15 chr2L:7248297-7248417 4.3e-05 45_[+3]_67 chr3R:28563890-28564010 4.8e-05 82_[+3]_30 chr3R:30012771-30012891 6.3e-05 1_[+3]_111 chrX:5621999-5622119 6.3e-05 106_[+3]_6 chr3L:20537830-20537950 6.3e-05 37_[+3]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGMGGGGG width=8 seqs=25 chrX:7967644-7967764 ( 79) GGAGGGGG 1 chr3L:6840034-6840154 ( 113) GGCGGGGG 1 chr2R:12034496-12034616 ( 23) GGCGGGGG 1 chr2L:12030243-12030363 ( 84) GGCGGGGG 1 chrX:20483298-20483418 ( 113) GGAGGGGG 1 chr3L:11278517-11278637 ( 80) GGCGGGGG 1 chr2R:18485739-18485859 ( 95) GGCGGGGG 1 chrX:11439375-11439495 ( 62) GGAGGGGG 1 chrX:16596533-16596653 ( 40) GGAGGGGG 1 chr2R:11534297-11534417 ( 12) GGAGGGGG 1 chr2R:25005695-25005815 ( 55) GGGGGGGG 1 chr3L:10341826-10341946 ( 7) GGGGGGGG 1 chr2R:16591609-16591729 ( 107) GGCGGGCG 1 chrX:18363577-18363697 ( 23) GGCGGGCG 1 chr3L:10838010-10838130 ( 21) GGAGGGCG 1 chr3R:31869712-31869832 ( 34) GGCGGGCG 1 chr3R:15407244-15407364 ( 48) GGAGCGGG 1 chr2R:10068587-10068707 ( 4) GGCGCGGG 1 chrX:774492-774612 ( 59) GGAGCGGG 1 chr2R:15951878-15951998 ( 98) GGGGGGCG 1 chr2L:7248297-7248417 ( 46) GGGGGGCG 1 chr3R:28563890-28564010 ( 83) GGGGCGGG 1 chr3R:30012771-30012891 ( 2) GGAGTGGG 1 chrX:5621999-5622119 ( 107) GGAGTGGG 1 chr3L:20537830-20537950 ( 38) GGAGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 2.5e-004 -1129 -1129 220 -1129 -1129 -1129 220 -1129 66 75 -12 -1129 -1129 -1129 220 -1129 -1129 -42 173 -128 -1129 -1129 220 -1129 -1129 16 181 -1129 -1129 -1129 220 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.440000 0.360000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.160000 0.720000 0.120000 0.000000 0.000000 1.000000 0.000000 0.000000 0.240000 0.760000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGGGGG MEME-3 regular expression -------------------------------------------------------------------------------- GG[ACG]GGG[GC]G -------------------------------------------------------------------------------- Time 20.06 secs. ******************************************************************************** ******************************************************************************** MOTIF SCACMCAC MEME-4 width = 8 sites = 15 llr = 148 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:a:7:a: pos.-specific C 5a:a3a:a probability G 3::::::: matrix T :::::::: bits 2.2 * * * * 2.0 * * * * 1.8 *** *** 1.6 *** *** Relative 1.3 *** *** Entropy 1.1 ******* (14.3 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACACAC consensus G C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9463904-9464024 112 9.64e-06 GCCTTCTCTT CCACACAC T chr3L:12116440-12116560 78 9.64e-06 CCGAGTACAG CCACACAC CAAATATCTT chr2L:21324500-21324620 4 2.68e-05 ACC GCACACAC AGTCACCGCA chr2R:11646068-11646188 65 2.68e-05 TAACTCTTCA GCACACAC ACTCTCTCTC chr2R:10874272-10874392 14 2.68e-05 AAATCAACAT GCACACAC TGACACCAAG chr2R:10018958-10019078 16 2.68e-05 TAACCGCCCC CCACCCAC CACTCCGGTG chr3L:16889684-16889804 50 2.68e-05 GGCACACCAA CCACCCAC TCACTCAAAG chr3R:20827109-20827229 100 2.68e-05 CCCACCGCAC CCACCCAC GACCACTCGC chrX:9012887-9013007 9 2.68e-05 TGTATTAA GCACACAC GCACACTAAT chr3L:8684898-8685018 94 2.68e-05 gctccccgca ccacccac ttccgccgcc chr2L:789143-789263 60 2.68e-05 CGAGGTGTTA CCACCCAC CACCCCGCTC chr3R:28569695-28569815 84 2.68e-05 ATTTCCCTCG GCACACAC ATAAACTCTA chr3R:9918957-9919077 52 4.69e-05 ACCTACACAA ACACACAC CTTTAGGTAC chr2R:18436202-18436322 81 4.69e-05 AAACAGAAAT ACACACAC ATTATATGAA chr3L:16359937-16360057 94 4.69e-05 TGGGCAAAAA ACACACAC AACAAGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9463904-9464024 9.6e-06 111_[+4]_1 chr3L:12116440-12116560 9.6e-06 77_[+4]_35 chr2L:21324500-21324620 2.7e-05 3_[+4]_109 chr2R:11646068-11646188 2.7e-05 64_[+4]_48 chr2R:10874272-10874392 2.7e-05 13_[+4]_99 chr2R:10018958-10019078 2.7e-05 15_[+4]_97 chr3L:16889684-16889804 2.7e-05 49_[+4]_63 chr3R:20827109-20827229 2.7e-05 99_[+4]_13 chrX:9012887-9013007 2.7e-05 8_[+4]_104 chr3L:8684898-8685018 2.7e-05 93_[+4]_19 chr2L:789143-789263 2.7e-05 59_[+4]_53 chr3R:28569695-28569815 2.7e-05 83_[+4]_29 chr3R:9918957-9919077 4.7e-05 51_[+4]_61 chr2R:18436202-18436322 4.7e-05 80_[+4]_32 chr3L:16359937-16360057 4.7e-05 93_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACMCAC width=8 seqs=15 chr2R:9463904-9464024 ( 112) CCACACAC 1 chr3L:12116440-12116560 ( 78) CCACACAC 1 chr2L:21324500-21324620 ( 4) GCACACAC 1 chr2R:11646068-11646188 ( 65) GCACACAC 1 chr2R:10874272-10874392 ( 14) GCACACAC 1 chr2R:10018958-10019078 ( 16) CCACCCAC 1 chr3L:16889684-16889804 ( 50) CCACCCAC 1 chr3R:20827109-20827229 ( 100) CCACCCAC 1 chrX:9012887-9013007 ( 9) GCACACAC 1 chr3L:8684898-8685018 ( 94) CCACCCAC 1 chr2L:789143-789263 ( 60) CCACCCAC 1 chr3R:28569695-28569815 ( 84) GCACACAC 1 chr3R:9918957-9919077 ( 52) ACACACAC 1 chr2R:18436202-18436322 ( 81) ACACACAC 1 chr3L:16359937-16360057 ( 94) ACACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 2.0e+003 -47 112 62 -1055 -1055 222 -1055 -1055 185 -1055 -1055 -1055 -1055 222 -1055 -1055 126 64 -1055 -1055 -1055 222 -1055 -1055 185 -1055 -1055 -1055 -1055 222 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.0e+003 0.200000 0.466667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACMCAC MEME-4 regular expression -------------------------------------------------------------------------------- [CGA]CAC[AC]CAC -------------------------------------------------------------------------------- Time 25.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCSCC MEME-5 width = 8 sites = 2 llr = 23 E-value = 5.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaa5aa probability G :::::5:: matrix T :::::::: bits 2.2 ***** ** 2.0 ***** ** 1.8 ***** ** 1.6 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26934646-26934766 2 8.86e-06 T CCCCCCCC ACCACTCTTC chr3R:30915400-30915520 37 8.86e-06 TATCACCTGG CCCCCGCC ATCTCCGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26934646-26934766 8.9e-06 1_[+5]_111 chr3R:30915400-30915520 8.9e-06 36_[+5]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCSCC width=8 seqs=2 chr3R:26934646-26934766 ( 2) CCCCCCCC 1 chr3R:30915400-30915520 ( 37) CCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.1e+004 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 122 120 -765 -765 222 -765 -765 -765 222 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCSCC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCC[CG]CC -------------------------------------------------------------------------------- Time 31.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10354943-10355063 1.33e-01 120 chr2L:7523693-7523813 2.94e-01 120 chr3R:15354128-15354248 2.89e-01 120 chr3R:28569695-28569815 1.91e-03 83_[+4(2.68e-05)]_29 chr3R:28563690-28563810 3.74e-02 80_[+1(8.43e-05)]_32 chr3R:28597707-28597827 3.11e-02 10_[+2(5.66e-05)]_102 chr2R:11534297-11534417 6.07e-05 11_[+3(1.11e-05)]_101 chrX:16596533-16596653 2.38e-02 39_[+3(1.11e-05)]_73 chr3R:17803159-17803279 7.67e-02 120 chr3R:28548592-28548712 5.43e-02 120 chr2L:789143-789263 3.81e-04 59_[+4(2.68e-05)]_53 chr3R:28569906-28570026 1.97e-01 102_[+2(5.66e-05)]_10 chr3R:10135221-10135341 1.45e-03 120 chr3R:7524346-7524466 8.02e-05 73_[+1(8.43e-05)]_39 chr3R:17950059-17950179 1.41e-01 104_[+2(5.66e-05)]_8 chrX:2738794-2738914 3.13e-01 120 chr3R:18572989-18573109 3.33e-01 120 chr3L:5180310-5180430 1.26e-01 80_[+1(4.67e-05)]_32 chr2R:17563528-17563648 1.50e-01 120 chrX:6547055-6547175 9.50e-02 60_[+1(8.43e-05)]_52 chrX:11439375-11439495 2.22e-02 61_[+3(1.11e-05)]_51 chr2R:17852675-17852795 8.61e-02 51_[+2(5.66e-05)]_61 chr2R:18485739-18485859 1.19e-03 [+1(8.43e-05)]_8_[+1(4.67e-05)]_70_\ [+3(1.11e-05)]_18 chr3L:8684898-8685018 9.68e-04 13_[+2(5.66e-05)]_72_[+4(2.68e-05)]_\ 19 chrX:16650196-16650316 1.14e-01 120 chr3R:28567929-28568049 3.57e-01 120 chr2L:7678750-7678870 2.19e-02 120 chr3R:16007286-16007406 3.66e-01 120 chr3R:21635297-21635417 2.37e-01 120 chr3R:14005245-14005365 8.31e-01 120 chrX:7228493-7228613 7.44e-02 120 chr2L:14506320-14506440 3.65e-01 120 chr3R:22380054-22380174 9.47e-02 120 chr2R:6686969-6687089 2.31e-01 120 chr3R:28550570-28550690 4.38e-02 120 chr3R:18433058-18433178 3.66e-02 120 chr3R:8890570-8890690 8.45e-02 120 chr3R:24601232-24601352 8.53e-02 120 chr2R:7655302-7655422 2.66e-01 120 chr2R:13936513-13936633 7.45e-02 120 chr2L:1502829-1502949 3.78e-01 120 chr3R:13446171-13446291 3.64e-01 120 chr3L:11278517-11278637 5.29e-04 13_[+2(5.66e-05)]_58_[+3(1.11e-05)]_\ 12_[+3(9.97e-05)]_13 chrX:8714356-8714476 3.08e-02 120 chrX:774492-774612 9.20e-02 58_[+3(3.81e-05)]_54 chr3R:27920955-27921075 4.39e-02 120 chr2L:4375754-4375874 3.11e-02 2_[+1(2.94e-05)]_110 chr3R:28580835-28580955 9.23e-01 120 chr2R:24133259-24133379 2.36e-01 120 chrX:1183336-1183456 8.48e-03 94_[+1(2.94e-05)]_18 chr2R:19631126-19631246 4.18e-02 38_[+1(8.43e-05)]_74 chrX:18084083-18084203 2.17e-02 120 chr3L:1140676-1140796 2.66e-01 74_[+2(5.66e-05)]_38 chr3R:22669125-22669245 1.34e-01 120 chr2R:22635853-22635973 4.10e-01 120 chr3R:18779587-18779707 9.34e-02 120 chr2L:18878552-18878672 8.38e-03 88_[+1(8.43e-05)]_24 chrX:9012887-9013007 6.11e-04 8_[+4(2.68e-05)]_42_[+3(1.61e-05)]_\ 54 chr2R:22644643-22644763 4.32e-01 120 chr2L:7248297-7248417 8.24e-02 45_[+3(4.29e-05)]_67 chr2L:10435992-10436112 3.36e-01 120 chr2R:12751569-12751689 8.52e-04 91_[+1(4.67e-05)]_21 chr3R:28589302-28589422 3.44e-02 88_[+1(4.67e-05)]_24 chrX:10733228-10733348 4.25e-01 120 chr3R:31869712-31869832 1.72e-02 33_[+3(2.71e-05)]_70_[+1(8.43e-05)]_\ 1 chr3L:11686012-11686132 1.54e-02 111_[+5(8.86e-06)]_1 chr2R:8170196-8170316 2.80e-02 120 chr3R:27067504-27067624 2.01e-01 14_[+2(5.66e-05)]_98 chr3R:10052839-10052959 4.67e-01 120 chr3R:19060318-19060438 8.10e-02 120 chr3L:10838010-10838130 9.55e-02 20_[+3(2.71e-05)]_92 chr3R:28568195-28568315 5.48e-01 120 chr3L:12482417-12482537 5.87e-02 120 chr2R:18947669-18947789 1.82e-01 120 chr2R:10068587-10068707 1.98e-02 3_[+3(3.81e-05)]_109 chr2L:10754756-10754876 2.75e-01 120 chr3R:23747577-23747697 4.68e-03 104_[+5(2.06e-05)]_8 chr2R:18178602-18178722 6.93e-02 120 chr2R:9950245-9950365 5.39e-02 120 chr3R:17965554-17965674 3.96e-01 49_[+2(5.66e-05)]_63 chr3R:23126379-23126499 3.31e-01 120 chrX:18363577-18363697 6.12e-02 22_[+3(2.71e-05)]_39_[+3(3.81e-05)]_\ 43 chrX:694496-694616 5.71e-02 120 chr3R:30062128-30062248 1.68e-01 68_[+2(5.66e-05)]_44 chr2L:18556533-18556653 1.58e-02 36_[+1(2.94e-05)]_76 chr3L:18866179-18866299 4.77e-02 42_[+1(8.43e-05)]_70 chr3L:15631189-15631309 2.02e-01 120 chr2R:21640440-21640560 2.71e-01 120 chr3L:11004140-11004260 2.20e-02 106_[+4(2.68e-05)]_6 chr3L:8873200-8873320 7.60e-02 120 chr3L:19559306-19559426 7.90e-03 24_[+1(2.94e-05)]_88 chr3R:23119990-23120110 1.81e-02 15_[+1(2.94e-05)]_97 chrX:9885481-9885601 6.54e-02 38_[+1(8.43e-05)]_74 chr2L:14396363-14396483 2.35e-01 120 chr3R:5306259-5306379 6.46e-03 97_[+2(5.66e-05)]_15 chr2L:18965406-18965526 3.56e-01 120 chr2R:22180446-22180566 1.11e-01 120 chr3L:9024986-9025106 2.78e-02 80_[+1(8.43e-05)]_32 chr3L:7841721-7841841 5.89e-02 120 chrX:20483298-20483418 5.96e-04 112_[+3(1.11e-05)] chr3L:2433475-2433595 1.37e-01 120 chr3R:15407244-15407364 3.85e-03 [+1(2.94e-05)]_39_[+3(3.81e-05)]_65 chr3L:16166640-16166760 6.22e-02 43_[+2(5.66e-05)]_69 chr2R:15951878-15951998 1.71e-03 97_[+3(4.29e-05)]_15 chr2R:24981173-24981293 1.68e-01 120 chrX:16828748-16828868 5.97e-02 120 chr3R:30345616-30345736 4.17e-01 120 chr3R:21066620-21066740 1.24e-02 95_[+1(2.94e-05)]_17 chr3R:11640057-11640177 8.81e-02 120 chrX:18374570-18374690 1.36e-01 120 chr3L:10341826-10341946 8.37e-03 5_[+3(1.61e-05)]_33_[+1(8.43e-05)]_\ 66 chr3L:19979759-19979879 3.08e-01 41_[+2(5.66e-05)]_71 chr2R:15601986-15602106 3.47e-01 120 chr3R:23178312-23178432 3.35e-02 120 chr2R:15474215-15474335 2.75e-01 120 chr2L:106640-106760 9.28e-02 120 chrX:10364694-10364814 2.12e-01 120 chr2R:25005695-25005815 1.88e-02 52_[+3(1.61e-05)]_60 chrX:6708939-6709059 9.18e-01 120 chr3L:8834645-8834765 5.06e-02 62_[+1(4.67e-05)]_50 chr2R:18334335-18334455 3.98e-02 120 chr3L:18002248-18002368 5.29e-01 120 chr3R:27695167-27695287 4.13e-02 120 chr2L:12030243-12030363 1.72e-02 83_[+3(1.11e-05)]_29 chrX:6706716-6706836 3.23e-01 120 chr3R:11437663-11437783 4.87e-01 120 chr2L:5228804-5228924 6.32e-03 72_[+2(5.66e-05)]_40 chr3R:13990196-13990316 4.81e-03 92_[+1(2.94e-05)]_20 chr3R:28563890-28564010 1.80e-02 82_[+3(4.77e-05)]_30 chr3L:139920-140040 2.97e-01 120 chr3R:28558890-28559010 1.04e-02 120 chr3L:8690944-8691064 2.61e-01 120 chr3R:9219532-9219652 7.36e-02 120 chr2R:21480511-21480631 1.61e-01 120 chr3R:30915400-30915520 6.02e-03 36_[+5(8.86e-06)]_76 chr2L:14635384-14635504 1.75e-01 120 chr2R:10151183-10151303 6.53e-02 120 chr2L:5525876-5525996 4.14e-01 120 chr2L:1931856-1931976 1.25e-01 120 chr3R:30006015-30006135 9.26e-02 95_[+2(5.66e-05)]_17 chr3R:19056982-19057102 6.53e-02 120 chr3R:26934646-26934766 1.82e-04 1_[+5(8.86e-06)]_70_[+1(4.67e-05)]_\ 33 chr3R:14769144-14769264 5.77e-01 120 chr3L:20241708-20241828 9.72e-01 120 chr3L:7349433-7349553 2.54e-03 8_[+5(8.86e-06)]_33_[+5(2.06e-05)]_\ 63 chr3L:9209752-9209872 2.48e-02 98_[+4(6.97e-05)]_14 chr3L:1000097-1000217 1.65e-01 120 chrX:1901847-1901967 5.08e-01 120 chr2R:21303137-21303257 3.55e-01 120 chr3L:6830509-6830629 1.97e-02 69_[+2(5.66e-05)]_43 chr2L:16540863-16540983 7.81e-04 54_[+2(5.66e-05)]_21_[+1(8.43e-05)]_\ 29 chr3R:20827109-20827229 1.01e-03 68_[+1(4.67e-05)]_23_[+4(2.68e-05)]_\ 13 chr3L:20449794-20449914 5.93e-01 120 chrX:15496810-15496930 3.19e-02 120 chrX:10385022-10385142 2.50e-01 120 chr3L:15648038-15648158 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2.89e-01 120 chr3L:5141856-5141976 2.72e-01 84_[+1(8.43e-05)]_28 chr3L:20537830-20537950 5.66e-02 37_[+3(6.27e-05)]_75 chr3L:7806988-7807108 2.12e-01 120 chr3L:18144716-18144836 8.12e-01 120 chr3R:11236164-11236284 1.08e-02 54_[+4(8.73e-05)]_58 chr3R:25448855-25448975 5.99e-02 107_[+2(5.66e-05)]_5 chr3R:9918957-9919077 3.03e-04 51_[+4(4.69e-05)]_20_[+2(5.66e-05)]_\ 33 chr3L:6840034-6840154 4.80e-03 112_[+3(1.11e-05)] chr2L:20968933-20969053 2.52e-03 47_[+4(4.69e-05)]_65 chr2R:11266010-11266130 4.39e-01 120 chr3R:14032579-14032699 4.19e-02 120 chr3R:30537063-30537183 2.28e-01 120 chr3L:8514845-8514965 3.08e-01 120 chr3R:22756432-22756552 1.49e-02 39_[+2(5.66e-05)]_73 chr2R:14526828-14526948 3.66e-02 17_[+2(5.66e-05)]_95 chr2R:18613048-18613168 3.64e-01 120 chr3L:21201401-21201521 7.13e-01 120 chr3L:6958275-6958395 6.61e-01 120 chr3R:6818336-6818456 5.34e-01 120 chr2R:10018958-10019078 1.48e-04 12_[+5(2.06e-05)]_63_[+2(5.66e-05)]_\ 29 chr2R:17781888-17782008 2.05e-01 112_[+2(5.66e-05)] 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chr2R:15568849-15568969 2.51e-01 120 chrX:5621999-5622119 4.95e-03 106_[+3(6.27e-05)]_6 chr3L:14056969-14057089 1.17e-01 95_[+2(5.66e-05)]_17 chrX:7967644-7967764 1.14e-02 78_[+3(1.11e-05)]_34 chr3L:2439140-2439260 3.04e-02 78_[+2(5.66e-05)]_34 chrX:9500819-9500939 4.89e-01 120 chrX:5768750-5768870 5.05e-01 120 chr2L:5721028-5721148 2.95e-01 120 chr3R:9056813-9056933 3.33e-02 120 chr3R:29049458-29049578 4.36e-01 120 chr3L:835587-835707 1.87e-01 120 chr2L:14495584-14495704 4.91e-01 120 chr2L:21324500-21324620 1.85e-02 3_[+4(2.68e-05)]_109 chr3R:30012771-30012891 9.70e-04 1_[+3(6.27e-05)]_76_[+1(2.94e-05)]_\ 27 chrX:16104758-16104878 4.91e-01 120 chr3R:12383933-12384053 4.86e-01 120 chr2L:14398690-14398810 1.23e-01 15_[+1(4.67e-05)]_97 chrX:6253884-6254004 2.51e-02 61_[+1(4.67e-05)]_51 chr2R:7729961-7730081 4.68e-02 120 chr3R:20915883-20916003 1.70e-02 60_[+1(2.94e-05)]_52 chr3R:29724913-29725033 8.92e-02 120 chr3R:23121047-23121167 4.90e-01 120 chr3R:10514796-10514916 4.93e-02 8_[+1(2.94e-05)]_104 chr3L:10845899-10846019 8.42e-04 58_[+1(2.94e-05)]_54 chrX:19375599-19375719 2.12e-01 120 chr3R:18445578-18445698 1.01e-02 120 chr2L:8361308-8361428 3.21e-02 29_[+1(8.43e-05)]_83 chr3L:14657637-14657757 6.64e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************