******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd96Cb.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:6807592-6807712 1.0000 120 chr3R:22220963-22221083 1.0000 120 chr3L:4534055-4534175 1.0000 120 chr3R:18804625-18804745 1.0000 120 chr3L:7522021-7522141 1.0000 120 chr2L:20204767-20204887 1.0000 120 chr2L:18906780-18906900 1.0000 120 chr3R:13548201-13548321 1.0000 120 chr3L:4720613-4720733 1.0000 120 chrX:17762441-17762561 1.0000 120 chr3R:25755009-25755129 1.0000 120 chr2L:20939771-20939891 1.0000 120 chr3L:17113384-17113504 1.0000 120 chr2L:14252590-14252710 1.0000 120 chr3R:22494670-22494790 1.0000 120 chrX:14669348-14669468 1.0000 120 chr3L:16544339-16544459 1.0000 120 chrX:9911842-9911962 1.0000 120 chr3L:17404824-17404944 1.0000 120 chrX:17501678-17501798 1.0000 120 chr2R:23187252-23187372 1.0000 120 chr3L:17226473-17226593 1.0000 120 chr2L:3570001-3570121 1.0000 120 chr3L:10428900-10429020 1.0000 120 chr3L:15494341-15494461 1.0000 120 chr3R:10636165-10636285 1.0000 120 chr2R:11803378-11803498 1.0000 120 chrX:9119418-9119538 1.0000 120 chr3R:13892985-13893105 1.0000 120 chr3L:10391073-10391193 1.0000 120 chrX:3096460-3096580 1.0000 120 chr3L:19074036-19074156 1.0000 120 chrX:3740388-3740508 1.0000 120 chr3R:29004991-29005111 1.0000 120 chr2R:22384499-22384619 1.0000 120 chrX:7095041-7095161 1.0000 120 chr3L:14146515-14146635 1.0000 120 chr3R:13549675-13549795 1.0000 120 chr3L:16697204-16697324 1.0000 120 chr2L:20944510-20944630 1.0000 120 chr2L:3851444-3851564 1.0000 120 chr3L:13403147-13403267 1.0000 120 chr3R:14002216-14002336 1.0000 120 chr3L:4233116-4233236 1.0000 120 chr2L:7966204-7966324 1.0000 120 chr3L:11484623-11484743 1.0000 120 chr2R:19794355-19794475 1.0000 120 chr3R:22328774-22328894 1.0000 120 chr3R:21613002-21613122 1.0000 120 chr3L:12444207-12444327 1.0000 120 chr2R:19924019-19924139 1.0000 120 chr2L:3100968-3101088 1.0000 120 chr2L:14537562-14537682 1.0000 120 chr3R:10449128-10449248 1.0000 120 chr3R:10498691-10498811 1.0000 120 chr3L:9042760-9042880 1.0000 120 chr2L:3675898-3676018 1.0000 120 chr3L:5280163-5280283 1.0000 120 chr2L:19138481-19138601 1.0000 120 chr3R:29581567-29581687 1.0000 120 chr2R:23003212-23003332 1.0000 120 chr3R:13448543-13448663 1.0000 120 chr2L:1214640-1214760 1.0000 120 chr2R:21134039-21134159 1.0000 120 chr2L:18930938-18931058 1.0000 120 chrX:15364651-15364771 1.0000 120 chrX:22488422-22488542 1.0000 120 chr3R:28904318-28904438 1.0000 120 chr3R:21420054-21420174 1.0000 120 chr3L:7953076-7953196 1.0000 120 chr2R:18994137-18994257 1.0000 120 chr3L:12058573-12058693 1.0000 120 chr3R:7591371-7591491 1.0000 120 chr3L:7634890-7635010 1.0000 120 chr3R:14386240-14386360 1.0000 120 chr3R:11872854-11872974 1.0000 120 chr2L:12529130-12529250 1.0000 120 chr2R:18698808-18698928 1.0000 120 chr3R:8964121-8964241 1.0000 120 chr2R:20195230-20195350 1.0000 120 chrX:3455547-3455667 1.0000 120 chr2R:16091951-16092071 1.0000 120 chr2L:14690974-14691094 1.0000 120 chr3R:26900152-26900272 1.0000 120 chrX:12249003-12249123 1.0000 120 chr2L:3435195-3435315 1.0000 120 chr3R:27440707-27440827 1.0000 120 chr2R:10681439-10681559 1.0000 120 chrX:14634847-14634967 1.0000 120 chrX:3745297-3745417 1.0000 120 chr2L:19058988-19059108 1.0000 120 chr3L:11285277-11285397 1.0000 120 chrX:17471725-17471845 1.0000 120 chrX:4581860-4581980 1.0000 120 chr2L:7492058-7492178 1.0000 120 chr3R:30733239-30733359 1.0000 120 chr3R:21837190-21837310 1.0000 120 chr3L:4691898-4692018 1.0000 120 chr2R:14803432-14803552 1.0000 120 chr3R:11663617-11663737 1.0000 120 chrX:11653107-11653227 1.0000 120 chr3R:26444262-26444382 1.0000 120 chr3L:5952256-5952376 1.0000 120 chr3R:15652746-15652866 1.0000 120 chr3L:15693181-15693301 1.0000 120 chrX:12225466-12225586 1.0000 120 chr3L:1083486-1083606 1.0000 120 chr2L:19884609-19884729 1.0000 120 chr3L:905148-905268 1.0000 120 chr3L:12037934-12038054 1.0000 120 chr3R:13446661-13446781 1.0000 120 chrX:20644105-20644225 1.0000 120 chr2L:6819504-6819624 1.0000 120 chrX:11848726-11848846 1.0000 120 chr2L:3841080-3841200 1.0000 120 chr3R:8923041-8923161 1.0000 120 chrX:12937934-12938054 1.0000 120 chr3L:14363246-14363366 1.0000 120 chr3L:6157767-6157887 1.0000 120 chrX:12241179-12241299 1.0000 120 chr2R:22677916-22678036 1.0000 120 chrX:17510231-17510351 1.0000 120 chr2R:21527437-21527557 1.0000 120 chr3R:22878544-22878664 1.0000 120 chr3L:16873256-16873376 1.0000 120 chr2L:10543567-10543687 1.0000 120 chr2L:1646735-1646855 1.0000 120 chr3L:7592243-7592363 1.0000 120 chr3R:23297681-23297801 1.0000 120 chr2L:7295103-7295223 1.0000 120 chr2R:8734608-8734728 1.0000 120 chrX:20509658-20509778 1.0000 120 chrX:8601288-8601408 1.0000 120 chr2R:6220001-6220121 1.0000 120 chr3L:2879901-2880021 1.0000 120 chr3L:15532837-15532957 1.0000 120 chrX:17780387-17780507 1.0000 120 chr3R:13907810-13907930 1.0000 120 chr3R:29690602-29690722 1.0000 120 chr3R:6723917-6724037 1.0000 120 chr3L:1216559-1216679 1.0000 120 chr3R:14077135-14077255 1.0000 120 chr2R:17533769-17533889 1.0000 120 chr3L:1167071-1167191 1.0000 120 chr3R:6241312-6241432 1.0000 120 chrX:14622355-14622475 1.0000 120 chr2L:4915826-4915946 1.0000 120 chrX:14840649-14840769 1.0000 120 chr3R:11852072-11852192 1.0000 120 chr3L:10428237-10428357 1.0000 120 chr2R:19860377-19860497 1.0000 120 chr2R:14971252-14971372 1.0000 120 chr2R:11178610-11178730 1.0000 120 chr3R:25168371-25168491 1.0000 120 chrX:8445047-8445167 1.0000 120 chr3L:16054253-16054373 1.0000 120 chr3R:19113996-19114116 1.0000 120 chr3R:10681727-10681847 1.0000 120 chrX:20631260-20631380 1.0000 120 chr3L:11408870-11408990 1.0000 120 chr3L:16452445-16452565 1.0000 120 chr3L:10767321-10767441 1.0000 120 chr2L:3587398-3587518 1.0000 120 chrX:10825460-10825580 1.0000 120 chr3R:10628419-10628539 1.0000 120 chr3R:17231603-17231723 1.0000 120 chrX:18004335-18004455 1.0000 120 chr2L:14024793-14024913 1.0000 120 chr3L:8445176-8445296 1.0000 120 chrX:2396592-2396712 1.0000 120 chr3R:26892871-26892991 1.0000 120 chr2L:9206552-9206672 1.0000 120 chr3L:6817105-6817225 1.0000 120 chr3R:8849471-8849591 1.0000 120 chr3L:8951182-8951302 1.0000 120 chr2R:8759579-8759699 1.0000 120 chr3L:15691286-15691406 1.0000 120 chr3R:4846932-4847052 1.0000 120 chr3R:21993047-21993167 1.0000 120 chr3R:23921828-23921948 1.0000 120 chr3L:22277358-22277478 1.0000 120 chr3L:14190161-14190281 1.0000 120 chr2R:8045128-8045248 1.0000 120 chr3R:14095523-14095643 1.0000 120 chr2R:6157397-6157517 1.0000 120 chr2R:21364865-21364985 1.0000 120 chr3L:10931574-10931694 1.0000 120 chr3L:3078592-3078712 1.0000 120 chr3L:10206308-10206428 1.0000 120 chr3L:13197656-13197776 1.0000 120 chr2L:7270410-7270530 1.0000 120 chrX:18525048-18525168 1.0000 120 chr3R:19627826-19627946 1.0000 120 chr3R:8955039-8955159 1.0000 120 chr2L:19377575-19377695 1.0000 120 chr3R:19014936-19015056 1.0000 120 chr3L:3380632-3380752 1.0000 120 chr2L:17747264-17747384 1.0000 120 chr3R:23872951-23873071 1.0000 120 chr3R:16771727-16771847 1.0000 120 chr3R:23387070-23387190 1.0000 120 chr3R:22108484-22108604 1.0000 120 chr3L:18114027-18114147 1.0000 120 chr2L:15908574-15908694 1.0000 120 chrX:10573679-10573799 1.0000 120 chr3R:6818710-6818830 1.0000 120 chrX:6615573-6615693 1.0000 120 chrX:16854870-16854990 1.0000 120 chr3L:2159063-2159183 1.0000 120 chrX:5968204-5968324 1.0000 120 chrX:9120952-9121072 1.0000 120 chr3L:772328-772448 1.0000 120 chr3R:21824219-21824339 1.0000 120 chr2R:14576114-14576234 1.0000 120 chrX:13764539-13764659 1.0000 120 chr3L:13917952-13918072 1.0000 120 chr3L:4607845-4607965 1.0000 120 chrX:19225013-19225133 1.0000 120 chr3R:26014384-26014504 1.0000 120 chrX:7571361-7571481 1.0000 120 chr3L:797092-797212 1.0000 120 chr3R:17584188-17584308 1.0000 120 chr3L:9505495-9505615 1.0000 120 chr3R:25174297-25174417 1.0000 120 chr3L:10350817-10350937 1.0000 120 chrX:11081333-11081453 1.0000 120 chr2L:18900006-18900126 1.0000 120 chr3L:20630709-20630829 1.0000 120 chr2L:8471861-8471981 1.0000 120 chr2L:8071796-8071916 1.0000 120 chr3L:10951180-10951300 1.0000 120 chr2L:15442269-15442389 1.0000 120 chr3R:22260332-22260452 1.0000 120 chr3L:18250854-18250974 1.0000 120 chrX:18921084-18921204 1.0000 120 chr3L:11334152-11334272 1.0000 120 chrX:3019750-3019870 1.0000 120 chrX:2166302-2166422 1.0000 120 chrX:19009023-19009143 1.0000 120 chr3L:13189426-13189546 1.0000 120 chrX:10067651-10067771 1.0000 120 chrX:12242526-12242646 1.0000 120 chr2L:12351037-12351157 1.0000 120 chrX:12454527-12454647 1.0000 120 chr2L:20890002-20890122 1.0000 120 chrX:5639219-5639339 1.0000 120 chr2L:9595015-9595135 1.0000 120 chr3L:20517004-20517124 1.0000 120 chrX:10600644-10600764 1.0000 120 chr2R:12727690-12727810 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fd96Cb/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd96Cb.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.361 C 0.141 G 0.138 T 0.36 Background letter frequencies (from file dataset with add-one prior applied): A 0.361 C 0.141 G 0.138 T 0.36 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SWGTGCAY MEME-1 width = 8 sites = 21 llr = 197 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 23::::a: pos.-specific C 5::::a:4 probability G 3:a1a::1 matrix T :7:9:::5 bits 2.9 * ** 2.6 * ** 2.3 * ** 2.0 * ** Relative 1.7 * ** Entropy 1.4 * *** (13.5 bits) 1.1 * ***** 0.9 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CTGTGCAT consensus GA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5952256-5952376 113 4.94e-06 TTCATTTTCA GTGTGCAC chr2R:12727690-12727810 113 1.38e-05 CCATTTCTCT CAGTGCAC chrX:12454527-12454647 99 1.38e-05 TTTTAACCCA CTGTGCAT TCGTGTACCG chrX:2166302-2166422 99 1.38e-05 ACTTTTCCTG CAGTGCAC CTCCTTGCGC chr3R:22108484-22108604 103 1.38e-05 GTATTTTTTC CAGTGCAC AACCCCAACT chr3R:8923041-8923161 68 1.38e-05 CGATTTTTTA CAGTGCAC AAAATTCGCT chr3L:12037934-12038054 112 1.38e-05 CCTTTTCTCT CTGTGCAT C chr3L:4691898-4692018 25 1.38e-05 ATTTTATTAT CTGTGCAT ATTGATTTAC chrX:13764539-13764659 95 2.35e-05 ACTTTTCTCC GTGTGCAT ACCCTTGCTT chrX:20509658-20509778 43 2.35e-05 AAGTAGAAAG GAGTGCAC TCTTTTACTT chr2R:21134039-21134159 98 2.35e-05 TATTTTTTTC GTGTGCAT TTCATAAGTT chr3R:8849471-8849591 5 3.32e-05 TTGC CTGTGCAG CCACTGGAAA chr2L:1214640-1214760 110 3.32e-05 TCCAGGCCCA CTGTGCAG TTC chr3L:9042760-9042880 62 3.67e-05 TAGAATATGG CTGGGCAT CATAGAAATC chr2R:18994137-18994257 13 5.17e-05 CACATCGCTG ATGTGCAC TCAGAAAAAT chr3R:10498691-10498811 32 5.17e-05 TATGCTTAAG GAGTGCAT CTGCATTTAT chr3L:4720613-4720733 1 5.17e-05 . ATGTGCAC GGTGAAGAAA chrX:10600644-10600764 53 5.75e-05 TAGCTTCTAA GTGGGCAT GAAACTAATT chr3L:2879901-2880021 97 6.09e-05 TTTCGAAATT CAGGGCAT TCGCAGTTCG chr3L:1167071-1167191 75 8.60e-05 GTATCTTTTC ATGTGCAT ATCATACGAT chrX:17762441-17762561 87 8.60e-05 CCCAataaat atgtgcat ttttaaagta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5952256-5952376 4.9e-06 112_[+1] chr2R:12727690-12727810 1.4e-05 112_[+1] chrX:12454527-12454647 1.4e-05 98_[+1]_14 chrX:2166302-2166422 1.4e-05 98_[+1]_14 chr3R:22108484-22108604 1.4e-05 102_[+1]_10 chr3R:8923041-8923161 1.4e-05 67_[+1]_45 chr3L:12037934-12038054 1.4e-05 111_[+1]_1 chr3L:4691898-4692018 1.4e-05 24_[+1]_88 chrX:13764539-13764659 2.3e-05 94_[+1]_18 chrX:20509658-20509778 2.3e-05 42_[+1]_70 chr2R:21134039-21134159 2.3e-05 97_[+1]_15 chr3R:8849471-8849591 3.3e-05 4_[+1]_108 chr2L:1214640-1214760 3.3e-05 109_[+1]_3 chr3L:9042760-9042880 3.7e-05 61_[+1]_51 chr2R:18994137-18994257 5.2e-05 12_[+1]_100 chr3R:10498691-10498811 5.2e-05 31_[+1]_81 chr3L:4720613-4720733 5.2e-05 [+1]_112 chrX:10600644-10600764 5.7e-05 52_[+1]_60 chr3L:2879901-2880021 6.1e-05 96_[+1]_16 chr3L:1167071-1167191 8.6e-05 74_[+1]_38 chrX:17762441-17762561 8.6e-05 86_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SWGTGCAY width=8 seqs=21 chr3L:5952256-5952376 ( 113) GTGTGCAC 1 chr2R:12727690-12727810 ( 113) CAGTGCAC 1 chrX:12454527-12454647 ( 99) CTGTGCAT 1 chrX:2166302-2166422 ( 99) CAGTGCAC 1 chr3R:22108484-22108604 ( 103) CAGTGCAC 1 chr3R:8923041-8923161 ( 68) CAGTGCAC 1 chr3L:12037934-12038054 ( 112) CTGTGCAT 1 chr3L:4691898-4692018 ( 25) CTGTGCAT 1 chrX:13764539-13764659 ( 95) GTGTGCAT 1 chrX:20509658-20509778 ( 43) GAGTGCAC 1 chr2R:21134039-21134159 ( 98) GTGTGCAT 1 chr3R:8849471-8849591 ( 5) CTGTGCAG 1 chr2L:1214640-1214760 ( 110) CTGTGCAG 1 chr3L:9042760-9042880 ( 62) CTGGGCAT 1 chr2R:18994137-18994257 ( 13) ATGTGCAC 1 chr3R:10498691-10498811 ( 32) GAGTGCAT 1 chr3L:4720613-4720733 ( 1) ATGTGCAC 1 chrX:10600644-10600764 ( 53) GTGGGCAT 1 chr3L:2879901-2880021 ( 97) CAGGGCAT 1 chr3L:1167071-1167191 ( 75) ATGTGCAT 1 chrX:17762441-17762561 ( 87) ATGTGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 1.9e+003 -92 189 105 -1104 -12 -1104 -1104 89 -1104 -1104 286 -1104 -1104 -1104 5 125 -1104 -1104 286 -1104 -1104 283 -1104 -1104 147 -1104 -1104 -1104 -1104 143 -53 54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.9e+003 0.190476 0.523810 0.285714 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.380952 0.095238 0.523810 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWGTGCAY MEME-1 regular expression -------------------------------------------------------------------------------- [CG][TA]GTGCA[TC] -------------------------------------------------------------------------------- Time 9.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTGRC MEME-2 width = 8 sites = 6 llr = 74 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::5: pos.-specific C :a:a3::a probability G a::::a5: matrix T ::::7::: bits 2.9 ** * * * 2.6 ** * * * 2.3 ** * * * 2.0 ** * * * Relative 1.7 ** * * * Entropy 1.4 **** * * (17.8 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGAC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12241179-12241299 79 3.75e-07 TATCCCCGTT GCACCGGC AAATCCACCT chrX:11653107-11653227 15 1.33e-06 TAAGCGCACT GCACTGGC AGAAAAACGT chrX:17471725-17471845 17 1.33e-06 TTGTTTCAAT GCACTGGC ATTGTGAGCG chr2L:14024793-14024913 45 2.31e-06 TCGAGCAAGA GCACCGAC TGTAGGATAC chr3R:14077135-14077255 11 4.82e-06 ATGTGTAAAT GCACTGAC AAAAACGGGG chr2R:8734608-8734728 52 4.82e-06 TAAATTCCCA GCACTGAC TGAAGAAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12241179-12241299 3.7e-07 78_[+2]_34 chrX:11653107-11653227 1.3e-06 14_[+2]_98 chrX:17471725-17471845 1.3e-06 16_[+2]_96 chr2L:14024793-14024913 2.3e-06 44_[+2]_68 chr3R:14077135-14077255 4.8e-06 10_[+2]_102 chr2R:8734608-8734728 4.8e-06 51_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGRC width=8 seqs=6 chrX:12241179-12241299 ( 79) GCACCGGC 1 chrX:11653107-11653227 ( 15) GCACTGGC 1 chrX:17471725-17471845 ( 17) GCACTGGC 1 chr2L:14024793-14024913 ( 45) GCACCGAC 1 chr3R:14077135-14077255 ( 11) GCACTGAC 1 chr2R:8734608-8734728 ( 52) GCACTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 1.4e+003 -923 -923 286 -923 -923 282 -923 -923 147 -923 -923 -923 -923 282 -923 -923 -923 124 -923 89 -923 -923 286 -923 47 -923 186 -923 -923 282 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGRC MEME-2 regular expression -------------------------------------------------------------------------------- GCAC[TC]G[AG]C -------------------------------------------------------------------------------- Time 15.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGGSA MEME-3 width = 8 sites = 2 llr = 28 E-value = 4.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :a:a::5: probability G a:a:aa5: matrix T :::::::: bits 2.9 ****** 2.6 ****** 2.3 ****** 2.0 ****** Relative 1.7 ******* Entropy 1.4 ******** (20.4 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCGCGGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16771727-16771847 44 7.26e-07 TAGTGGTGAA GCGCGGGA GAACTTTCAA chr3R:17231603-17231723 113 7.26e-07 CGAGTCCGAG GCGCGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16771727-16771847 7.3e-07 43_[+3]_69 chr3R:17231603-17231723 7.3e-07 112_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGGSA width=8 seqs=2 chr3R:16771727-16771847 ( 44) GCGCGGGA 1 chr3R:17231603-17231723 ( 113) GCGCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.4e+003 -765 -765 286 -765 -765 282 -765 -765 -765 -765 286 -765 -765 282 -765 -765 -765 -765 286 -765 -765 -765 286 -765 -765 182 186 -765 146 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGGSA MEME-3 regular expression -------------------------------------------------------------------------------- GCGCGG[CG]A -------------------------------------------------------------------------------- Time 21.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTCAGC MEME-4 width = 8 sites = 4 llr = 52 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C a:a:a::8 probability G :a::::a: matrix T :::a:::3 bits 2.9 *** * * 2.6 *** * * 2.3 *** * * 2.0 *** * * Relative 1.7 *** * ** Entropy 1.4 ******** (18.8 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCTCAGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19225013-19225133 38 9.78e-07 TTATTTTTAA CGCTCAGC ATTTTGGGAA chr3L:7953076-7953196 8 9.78e-07 TATCCTT CGCTCAGC AGCTTTTCGA chr2R:22384499-22384619 111 9.78e-07 TGATTGAAGT CGCTCAGC TT chr2R:14971252-14971372 92 3.48e-06 AATCATCATT CGCTCAGT TTACAAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19225013-19225133 9.8e-07 37_[+4]_75 chr3L:7953076-7953196 9.8e-07 7_[+4]_105 chr2R:22384499-22384619 9.8e-07 110_[+4]_2 chr2R:14971252-14971372 3.5e-06 91_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTCAGC width=8 seqs=4 chrX:19225013-19225133 ( 38) CGCTCAGC 1 chr3L:7953076-7953196 ( 8) CGCTCAGC 1 chr2R:22384499-22384619 ( 111) CGCTCAGC 1 chr2R:14971252-14971372 ( 92) CGCTCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 1.1e+004 -865 282 -865 -865 -865 -865 286 -865 -865 282 -865 -865 -865 -865 -865 147 -865 282 -865 -865 147 -865 -865 -865 -865 -865 286 -865 -865 241 -865 -53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCAGC MEME-4 regular expression -------------------------------------------------------------------------------- CGCTCAG[CT] -------------------------------------------------------------------------------- Time 27.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCSCA MEME-5 width = 8 sites = 2 llr = 26 E-value = 5.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :a::a5a: probability G a::a:5:: matrix T ::a::::: bits 2.9 ** ** * 2.6 ** ** * 2.3 ** ** * 2.0 ** ** * Relative 1.7 ** **** Entropy 1.4 ******** (19.0 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCTGCCCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19113996-19114116 19 1.94e-06 CTAATCCTAA GCTGCCCA CAGTTTTAGA chr2L:12529130-12529250 63 1.94e-06 ATTGCAAAAT GCTGCGCA AATTTTTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19113996-19114116 1.9e-06 18_[+5]_94 chr2L:12529130-12529250 1.9e-06 62_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCSCA width=8 seqs=2 chr3R:19113996-19114116 ( 19) GCTGCCCA 1 chr2L:12529130-12529250 ( 63) GCTGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0628 E= 5.9e+004 -765 -765 286 -765 -765 282 -765 -765 -765 -765 -765 147 -765 -765 286 -765 -765 282 -765 -765 -765 182 186 -765 -765 282 -765 -765 146 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCSCA MEME-5 regular expression -------------------------------------------------------------------------------- GCTGC[CG]CA -------------------------------------------------------------------------------- Time 34.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6807592-6807712 5.32e-01 120 chr3R:22220963-22221083 1.07e-01 120 chr3L:4534055-4534175 3.10e-01 39_[+5(7.34e-05)]_73 chr3R:18804625-18804745 9.98e-01 120 chr3L:7522021-7522141 9.74e-01 120 chr2L:20204767-20204887 4.79e-01 120 chr2L:18906780-18906900 1.87e-01 120 chr3R:13548201-13548321 1.15e-02 34_[+3(8.20e-05)]_78 chr3L:4720613-4720733 3.58e-02 [+1(5.17e-05)]_112 chrX:17762441-17762561 8.27e-02 86_[+1(8.60e-05)]_26 chr3R:25755009-25755129 1.00e+00 120 chr2L:20939771-20939891 9.56e-01 120 chr3L:17113384-17113504 7.34e-01 120 chr2L:14252590-14252710 7.37e-01 120 chr3R:22494670-22494790 3.07e-01 120 chrX:14669348-14669468 1.28e-02 80_[+5(7.34e-05)]_32 chr3L:16544339-16544459 1.65e-01 120 chrX:9911842-9911962 7.66e-01 120 chr3L:17404824-17404944 5.44e-01 120 chrX:17501678-17501798 9.87e-01 120 chr2R:23187252-23187372 9.01e-02 120 chr3L:17226473-17226593 7.74e-01 120 chr2L:3570001-3570121 9.45e-01 120 chr3L:10428900-10429020 9.38e-01 120 chr3L:15494341-15494461 1.00e+00 120 chr3R:10636165-10636285 9.73e-02 [+5(1.38e-05)]_112 chr2R:11803378-11803498 9.72e-02 120 chrX:9119418-9119538 6.71e-01 120 chr3R:13892985-13893105 9.28e-01 120 chr3L:10391073-10391193 8.50e-02 120 chrX:3096460-3096580 8.46e-01 120 chr3L:19074036-19074156 9.99e-01 120 chrX:3740388-3740508 9.59e-01 120 chr3R:29004991-29005111 1.51e-01 120 chr2R:22384499-22384619 3.68e-04 35_[+3(8.20e-05)]_67_[+4(9.78e-07)]_\ 2 chrX:7095041-7095161 2.81e-01 120 chr3L:14146515-14146635 2.17e-01 120 chr3R:13549675-13549795 6.85e-01 120 chr3L:16697204-16697324 5.43e-02 120 chr2L:20944510-20944630 9.66e-01 120 chr2L:3851444-3851564 8.25e-01 120 chr3L:13403147-13403267 2.12e-02 120 chr3R:14002216-14002336 5.03e-01 120 chr3L:4233116-4233236 1.28e-02 97_[+4(4.05e-05)]_15 chr2L:7966204-7966324 1.02e-01 120 chr3L:11484623-11484743 2.51e-01 120 chr2R:19794355-19794475 4.10e-01 120 chr3R:22328774-22328894 8.40e-01 120 chr3R:21613002-21613122 9.42e-01 120 chr3L:12444207-12444327 9.99e-01 120 chr2R:19924019-19924139 9.06e-01 120 chr2L:3100968-3101088 1.18e-01 120 chr2L:14537562-14537682 5.05e-01 120 chr3R:10449128-10449248 5.74e-01 120 chr3R:10498691-10498811 2.15e-02 31_[+1(5.17e-05)]_81 chr3L:9042760-9042880 4.31e-04 61_[+1(3.67e-05)]_51 chr2L:3675898-3676018 9.89e-01 120 chr3L:5280163-5280283 9.79e-01 120 chr2L:19138481-19138601 5.28e-02 120 chr3R:29581567-29581687 2.35e-01 120 chr2R:23003212-23003332 7.30e-03 120 chr3R:13448543-13448663 1.52e-01 120 chr2L:1214640-1214760 3.13e-02 109_[+1(3.32e-05)]_3 chr2R:21134039-21134159 2.23e-01 97_[+1(2.35e-05)]_15 chr2L:18930938-18931058 9.61e-01 120 chrX:15364651-15364771 4.55e-01 120 chrX:22488422-22488542 2.75e-01 120 chr3R:28904318-28904438 9.71e-01 120 chr3R:21420054-21420174 6.76e-01 120 chr3L:7953076-7953196 8.41e-04 7_[+4(9.78e-07)]_105 chr2R:18994137-18994257 9.67e-04 12_[+1(5.17e-05)]_100 chr3L:12058573-12058693 7.61e-01 120 chr3R:7591371-7591491 2.87e-02 120 chr3L:7634890-7635010 1.72e-01 120 chr3R:14386240-14386360 3.20e-01 120 chr3R:11872854-11872974 6.74e-01 120 chr2L:12529130-12529250 8.49e-04 62_[+5(1.94e-06)]_50 chr2R:18698808-18698928 7.75e-01 120 chr3R:8964121-8964241 6.78e-01 120 chr2R:20195230-20195350 4.75e-01 120 chrX:3455547-3455667 7.88e-01 120 chr2R:16091951-16092071 9.93e-01 120 chr2L:14690974-14691094 8.64e-01 120 chr3R:26900152-26900272 7.21e-01 120 chrX:12249003-12249123 2.71e-01 120 chr2L:3435195-3435315 3.75e-02 31_[+2(5.95e-05)]_81 chr3R:27440707-27440827 3.92e-01 120 chr2R:10681439-10681559 3.93e-01 120 chrX:14634847-14634967 9.71e-01 120 chrX:3745297-3745417 8.11e-01 120 chr2L:19058988-19059108 8.07e-02 120 chr3L:11285277-11285397 1.00e+00 120 chrX:17471725-17471845 2.34e-03 16_[+2(1.33e-06)]_96 chrX:4581860-4581980 9.72e-01 120 chr2L:7492058-7492178 2.33e-01 120 chr3R:30733239-30733359 9.53e-01 120 chr3R:21837190-21837310 9.87e-01 120 chr3L:4691898-4692018 6.86e-02 24_[+1(1.38e-05)]_88 chr2R:14803432-14803552 7.69e-01 120 chr3R:11663617-11663737 9.75e-01 120 chrX:11653107-11653227 1.54e-05 14_[+2(1.33e-06)]_98 chr3R:26444262-26444382 6.10e-01 120 chr3L:5952256-5952376 5.02e-02 112_[+1(4.94e-06)] chr3R:15652746-15652866 9.88e-01 120 chr3L:15693181-15693301 3.64e-02 120 chrX:12225466-12225586 1.01e-01 120 chr3L:1083486-1083606 2.32e-02 77_[+4(4.05e-05)]_35 chr2L:19884609-19884729 3.50e-02 120 chr3L:905148-905268 4.74e-02 120 chr3L:12037934-12038054 4.18e-03 111_[+1(1.38e-05)]_1 chr3R:13446661-13446781 6.98e-01 120 chrX:20644105-20644225 2.13e-01 120 chr2L:6819504-6819624 4.01e-01 120 chrX:11848726-11848846 1.65e-01 120 chr2L:3841080-3841200 2.84e-02 120 chr3R:8923041-8923161 1.15e-03 67_[+1(1.38e-05)]_45 chrX:12937934-12938054 1.00e+00 120 chr3L:14363246-14363366 6.21e-02 120 chr3L:6157767-6157887 6.65e-01 120 chrX:12241179-12241299 4.14e-04 78_[+2(3.75e-07)]_34 chr2R:22677916-22678036 9.96e-01 120 chrX:17510231-17510351 8.60e-01 120 chr2R:21527437-21527557 2.25e-01 120 chr3R:22878544-22878664 3.96e-01 120 chr3L:16873256-16873376 1.22e-01 120 chr2L:10543567-10543687 9.84e-01 120 chr2L:1646735-1646855 4.30e-01 120 chr3L:7592243-7592363 3.35e-01 120 chr3R:23297681-23297801 6.30e-01 120 chr2L:7295103-7295223 1.58e-01 120 chr2R:8734608-8734728 8.38e-03 51_[+2(4.82e-06)]_61 chrX:20509658-20509778 7.23e-02 42_[+1(2.35e-05)]_70 chrX:8601288-8601408 2.34e-01 120 chr2R:6220001-6220121 8.92e-01 120 chr3L:2879901-2880021 3.73e-03 96_[+1(6.09e-05)]_16 chr3L:15532837-15532957 4.41e-01 120 chrX:17780387-17780507 9.06e-01 120 chr3R:13907810-13907930 6.59e-01 120 chr3R:29690602-29690722 6.88e-01 120 chr3R:6723917-6724037 7.52e-02 120 chr3L:1216559-1216679 5.49e-02 120 chr3R:14077135-14077255 8.26e-04 10_[+2(4.82e-06)]_102 chr2R:17533769-17533889 8.61e-01 120 chr3L:1167071-1167191 2.03e-01 74_[+1(8.60e-05)]_38 chr3R:6241312-6241432 3.44e-01 120 chrX:14622355-14622475 4.35e-02 120 chr2L:4915826-4915946 9.24e-01 120 chrX:14840649-14840769 9.98e-01 120 chr3R:11852072-11852192 9.76e-01 120 chr3L:10428237-10428357 7.99e-01 120 chr2R:19860377-19860497 1.47e-01 120 chr2R:14971252-14971372 7.66e-03 91_[+4(3.48e-06)]_21 chr2R:11178610-11178730 4.25e-01 120 chr3R:25168371-25168491 4.62e-01 120 chrX:8445047-8445167 1.00e+00 120 chr3L:16054253-16054373 9.96e-01 120 chr3R:19113996-19114116 5.15e-05 18_[+5(1.94e-06)]_94 chr3R:10681727-10681847 9.21e-04 95_[+3(8.20e-05)]_17 chrX:20631260-20631380 9.48e-01 120 chr3L:11408870-11408990 1.88e-01 120 chr3L:16452445-16452565 6.73e-01 120 chr3L:10767321-10767441 8.84e-01 120 chr2L:3587398-3587518 2.20e-02 120 chrX:10825460-10825580 4.19e-01 120 chr3R:10628419-10628539 9.65e-01 120 chr3R:17231603-17231723 8.35e-05 9_[+5(7.34e-05)]_95_[+3(7.26e-07)] chrX:18004335-18004455 8.27e-01 120 chr2L:14024793-14024913 1.14e-02 44_[+2(2.31e-06)]_68 chr3L:8445176-8445296 9.75e-01 120 chrX:2396592-2396712 9.45e-01 120 chr3R:26892871-26892991 2.99e-01 120 chr2L:9206552-9206672 9.68e-01 120 chr3L:6817105-6817225 6.00e-01 120 chr3R:8849471-8849591 4.49e-03 4_[+1(3.32e-05)]_108 chr3L:8951182-8951302 8.57e-01 120 chr2R:8759579-8759699 4.54e-01 120 chr3L:15691286-15691406 4.69e-01 120 chr3R:4846932-4847052 1.55e-01 120 chr3R:21993047-21993167 1.81e-01 120 chr3R:23921828-23921948 1.00e-02 120 chr3L:22277358-22277478 5.02e-01 120 chr3L:14190161-14190281 8.11e-02 120 chr2R:8045128-8045248 8.12e-01 120 chr3R:14095523-14095643 1.04e-01 120 chr2R:6157397-6157517 9.93e-01 120 chr2R:21364865-21364985 8.54e-01 120 chr3L:10931574-10931694 9.91e-01 120 chr3L:3078592-3078712 2.09e-01 120 chr3L:10206308-10206428 7.86e-01 120 chr3L:13197656-13197776 5.80e-01 120 chr2L:7270410-7270530 2.60e-01 120 chrX:18525048-18525168 4.18e-01 120 chr3R:19627826-19627946 3.68e-01 120 chr3R:8955039-8955159 7.99e-01 120 chr2L:19377575-19377695 7.56e-01 120 chr3R:19014936-19015056 9.37e-01 120 chr3L:3380632-3380752 1.20e-01 120 chr2L:17747264-17747384 9.96e-01 120 chr3R:23872951-23873071 6.58e-01 120 chr3R:16771727-16771847 2.28e-03 43_[+3(7.26e-07)]_69 chr3R:23387070-23387190 4.90e-01 120 chr3R:22108484-22108604 1.12e-02 102_[+1(1.38e-05)]_10 chr3L:18114027-18114147 9.98e-01 120 chr2L:15908574-15908694 6.44e-01 120 chrX:10573679-10573799 2.99e-01 120 chr3R:6818710-6818830 9.10e-01 120 chrX:6615573-6615693 2.90e-01 120 chrX:16854870-16854990 8.55e-01 120 chr3L:2159063-2159183 9.62e-01 120 chrX:5968204-5968324 3.89e-01 120 chrX:9120952-9121072 5.78e-01 120 chr3L:772328-772448 3.75e-02 120 chr3R:21824219-21824339 6.66e-01 120 chr2R:14576114-14576234 6.19e-03 82_[+5(9.72e-05)]_30 chrX:13764539-13764659 4.97e-02 20_[+1(8.60e-05)]_66_[+1(2.35e-05)]_\ 18 chr3L:13917952-13918072 1.19e-01 120 chr3L:4607845-4607965 5.18e-02 120 chrX:19225013-19225133 9.04e-04 37_[+4(9.78e-07)]_75 chr3R:26014384-26014504 8.58e-01 120 chrX:7571361-7571481 6.14e-01 120 chr3L:797092-797212 8.03e-01 120 chr3R:17584188-17584308 7.39e-01 120 chr3L:9505495-9505615 9.79e-01 120 chr3R:25174297-25174417 4.53e-02 120 chr3L:10350817-10350937 6.53e-01 120 chrX:11081333-11081453 3.73e-01 120 chr2L:18900006-18900126 1.62e-01 120 chr3L:20630709-20630829 5.70e-01 120 chr2L:8471861-8471981 7.18e-01 120 chr2L:8071796-8071916 9.77e-01 120 chr3L:10951180-10951300 9.99e-01 120 chr2L:15442269-15442389 3.70e-01 120 chr3R:22260332-22260452 8.38e-02 120 chr3L:18250854-18250974 7.03e-01 120 chrX:18921084-18921204 4.56e-01 120 chr3L:11334152-11334272 9.57e-01 120 chrX:3019750-3019870 3.84e-01 120 chrX:2166302-2166422 3.53e-05 52_[+3(3.09e-05)]_38_[+1(1.38e-05)]_\ 14 chrX:19009023-19009143 2.96e-02 120 chr3L:13189426-13189546 4.85e-02 120 chrX:10067651-10067771 1.38e-01 120 chrX:12242526-12242646 8.09e-01 120 chr2L:12351037-12351157 3.94e-01 120 chrX:12454527-12454647 5.52e-03 47_[+1(3.32e-05)]_43_[+1(1.38e-05)]_\ 14 chr2L:20890002-20890122 4.96e-01 120 chrX:5639219-5639339 6.97e-01 120 chr2L:9595015-9595135 6.99e-01 120 chr3L:20517004-20517124 8.74e-01 120 chrX:10600644-10600764 1.11e-01 52_[+1(5.75e-05)]_60 chr2R:12727690-12727810 8.19e-03 112_[+1(1.38e-05)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************