******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd85E.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:12809-12929 1.0000 120 chrM:5967-6087 1.0000 120 chrM:4675-4795 1.0000 120 chrM:7083-7203 1.0000 120 chrM:2123-2243 1.0000 120 chr2R:22729326-22729446 1.0000 120 chrX:8410545-8410665 1.0000 120 chrM:13266-13386 1.0000 120 chrM:11248-11368 1.0000 120 chrM:12197-12317 1.0000 120 chr2R:8143486-8143606 1.0000 120 chr3R:11614588-11614708 1.0000 120 chr2R:14482534-14482654 1.0000 120 chr3R:4307810-4307930 1.0000 120 chr3R:28861417-28861537 1.0000 120 chr3L:1458089-1458209 1.0000 120 chr3L:16042684-16042804 1.0000 120 chrX:10585537-10585657 1.0000 120 chr2R:16210423-16210543 1.0000 120 chr2L:2203012-2203132 1.0000 120 chrM:5075-5195 1.0000 120 chr2L:16536695-16536815 1.0000 120 chrM:1574-1694 1.0000 120 chr3R:6812465-6812585 1.0000 120 chr3L:2490108-2490228 1.0000 120 chr2R:19463546-19463666 1.0000 120 chrX:10927322-10927442 1.0000 120 chr3R:5612536-5612656 1.0000 120 chrX:263896-264016 1.0000 120 chr3R:20782798-20782918 1.0000 120 chr3R:11977169-11977289 1.0000 120 chr3R:24218750-24218870 1.0000 120 chr3L:3035437-3035557 1.0000 120 chrX:14134097-14134217 1.0000 120 chr2R:7758869-7758989 1.0000 120 chr3L:7804810-7804930 1.0000 120 chr2R:21202899-21203019 1.0000 120 chrM:2715-2835 1.0000 120 chrX:4175999-4176119 1.0000 120 chr2L:1568827-1568947 1.0000 120 chr3R:30461711-30461831 1.0000 120 chr2R:24813773-24813893 1.0000 120 chr3R:10133687-10133807 1.0000 120 chr2R:14031568-14031688 1.0000 120 chr2L:2432974-2433094 1.0000 120 chr3L:12490180-12490300 1.0000 120 chr3L:7528731-7528851 1.0000 120 chrM:7418-7538 1.0000 120 chr3R:10826904-10827024 1.0000 120 chr3R:29291056-29291176 1.0000 120 chrM:14260-14380 1.0000 120 chr3R:21599701-21599821 1.0000 120 chrM:7620-7740 1.0000 120 chrX:2469994-2470114 1.0000 120 chr2R:11194127-11194247 1.0000 120 chr2L:12543247-12543367 1.0000 120 chr2R:19467393-19467513 1.0000 120 chr2R:24685062-24685182 1.0000 120 chr3L:7993991-7994111 1.0000 120 chr3L:10332192-10332312 1.0000 120 chr3L:18013249-18013369 1.0000 120 chrX:2545451-2545571 1.0000 120 chr2L:14248060-14248180 1.0000 120 chr3L:10709332-10709452 1.0000 120 chr2L:20083543-20083663 1.0000 120 chr2L:20821586-20821706 1.0000 120 chr3L:3400833-3400953 1.0000 120 chr3L:8518937-8519057 1.0000 120 chrM:3495-3615 1.0000 120 chr3R:9350673-9350793 1.0000 120 chr3R:10109300-10109420 1.0000 120 chr3L:17612090-17612210 1.0000 120 chr2R:10474723-10474843 1.0000 120 chr3L:16153992-16154112 1.0000 120 chr2L:4797764-4797884 1.0000 120 chr3L:10736973-10737093 1.0000 120 chr3L:12058564-12058684 1.0000 120 chr2L:9176825-9176945 1.0000 120 chr3R:24595614-24595734 1.0000 120 chr3L:21918749-21918869 1.0000 120 chr2R:17462187-17462307 1.0000 120 chr3R:31680039-31680159 1.0000 120 chr2L:19576840-19576960 1.0000 120 chrM:10684-10804 1.0000 120 chr3L:9468020-9468140 1.0000 120 chr3R:29758437-29758557 1.0000 120 chr2R:10603846-10603966 1.0000 120 chr2R:10238495-10238615 1.0000 120 chr3L:7528947-7529067 1.0000 120 chrM:5336-5456 1.0000 120 chrX:11558575-11558695 1.0000 120 chrX:17495470-17495590 1.0000 120 chr3R:6405513-6405633 1.0000 120 chr3L:21224810-21224930 1.0000 120 chr3L:10928869-10928989 1.0000 120 chr2L:18468679-18468799 1.0000 120 chr2R:20831777-20831897 1.0000 120 chr2L:21142308-21142428 1.0000 120 chr3L:13263889-13264009 1.0000 120 chr2R:6632404-6632524 1.0000 120 chr3L:21894905-21895025 1.0000 120 chr3R:14007726-14007846 1.0000 120 chr3R:15293642-15293762 1.0000 120 chr3L:16218100-16218220 1.0000 120 chr3R:10889364-10889484 1.0000 120 chr3L:16037836-16037956 1.0000 120 chr3R:14292494-14292614 1.0000 120 chr3R:9158052-9158172 1.0000 120 chr3L:9125205-9125325 1.0000 120 chr2R:14986967-14987087 1.0000 120 chr3R:23221962-23222082 1.0000 120 chrX:17878777-17878897 1.0000 120 chr2R:10568699-10568819 1.0000 120 chr3R:29682194-29682314 1.0000 120 chr3R:11937589-11937709 1.0000 120 chr3R:21348953-21349073 1.0000 120 chr2R:7623085-7623205 1.0000 120 chr3R:22781599-22781719 1.0000 120 chrX:15834717-15834837 1.0000 120 chr3L:15258548-15258668 1.0000 120 chr2L:12513923-12514043 1.0000 120 chr3R:11153978-11154098 1.0000 120 chr3R:8969004-8969124 1.0000 120 chrM:1782-1902 1.0000 120 chr3R:22140254-22140374 1.0000 120 chr3R:26230088-26230208 1.0000 120 chr3L:10365042-10365162 1.0000 120 chr3L:9551308-9551428 1.0000 120 chr2R:21646782-21646902 1.0000 120 chr2L:7611711-7611831 1.0000 120 chr3R:29088207-29088327 1.0000 120 chr2R:23659165-23659285 1.0000 120 chr3R:30387099-30387219 1.0000 120 chrX:12007038-12007158 1.0000 120 chr3L:17973120-17973240 1.0000 120 chrM:8663-8783 1.0000 120 chr3L:388324-388444 1.0000 120 chr2R:10772016-10772136 1.0000 120 chr2R:24955710-24955830 1.0000 120 chr3L:20188248-20188368 1.0000 120 chr2R:14140752-14140872 1.0000 120 chr2L:11155831-11155951 1.0000 120 chr3R:31991861-31991981 1.0000 120 chr3L:2831767-2831887 1.0000 120 chr2R:12535166-12535286 1.0000 120 chr3R:16526796-16526916 1.0000 120 chr2L:6472323-6472443 1.0000 120 chr3L:6457999-6458119 1.0000 120 chr3R:7491597-7491717 1.0000 120 chr3R:24031370-24031490 1.0000 120 chr2R:10227987-10228107 1.0000 120 chrM:10893-11013 1.0000 120 chr3L:11707926-11708046 1.0000 120 chr3R:20634738-20634858 1.0000 120 chr3R:11647000-11647120 1.0000 120 chr2R:17717317-17717437 1.0000 120 chr3R:30466000-30466120 1.0000 120 chr2L:18341105-18341225 1.0000 120 chr3R:8029623-8029743 1.0000 120 chr2L:4348682-4348802 1.0000 120 chr2R:13461323-13461443 1.0000 120 chrX:12890439-12890559 1.0000 120 chrX:21592169-21592289 1.0000 120 chr2R:21713290-21713410 1.0000 120 chr3R:21875183-21875303 1.0000 120 chrX:15852972-15853092 1.0000 120 chr2L:13165762-13165882 1.0000 120 chr2L:9705923-9706043 1.0000 120 chrX:12654347-12654467 1.0000 120 chr2R:19616306-19616426 1.0000 120 chr3L:833334-833454 1.0000 120 chr3R:4471466-4471586 1.0000 120 chr3L:10742970-10743090 1.0000 120 chr3R:20780172-20780292 1.0000 120 chrX:9078436-9078556 1.0000 120 chrX:3841132-3841252 1.0000 120 chr2L:7985179-7985299 1.0000 120 chr2R:7745272-7745392 1.0000 120 chr2R:11033654-11033774 1.0000 120 chr3R:9417801-9417921 1.0000 120 chr3R:18787339-18787459 1.0000 120 chr2L:2804709-2804829 1.0000 120 chr3L:17961926-17962046 1.0000 120 chr3L:10675859-10675979 1.0000 120 chr2R:15134274-15134394 1.0000 120 chr3R:24047298-24047418 1.0000 120 chr2L:21899475-21899595 1.0000 120 chr3R:23963070-23963190 1.0000 120 chr3L:11298426-11298546 1.0000 120 chr2R:21546449-21546569 1.0000 120 chr2L:16406671-16406791 1.0000 120 chrX:3672193-3672313 1.0000 120 chr3R:31724947-31725067 1.0000 120 chrX:14897827-14897947 1.0000 120 chr2R:14928155-14928275 1.0000 120 chr3L:14622482-14622602 1.0000 120 chr3L:21008928-21009048 1.0000 120 chr2L:18146722-18146842 1.0000 120 chr3R:11566969-11567089 1.0000 120 chr3L:15209041-15209161 1.0000 120 chr2L:10842447-10842567 1.0000 120 chr2L:20802330-20802450 1.0000 120 chr3L:8912417-8912537 1.0000 120 chr2R:18799551-18799671 1.0000 120 chr2R:19849239-19849359 1.0000 120 chr2L:20912997-20913117 1.0000 120 chr3L:7264159-7264279 1.0000 120 chr3L:9614859-9614979 1.0000 120 chr3R:8858059-8858179 1.0000 120 chr2R:10477911-10478031 1.0000 120 chr2R:20996726-20996846 1.0000 120 chr2R:9692013-9692133 1.0000 120 chrX:14953156-14953276 1.0000 120 chr2R:24275568-24275688 1.0000 120 chr2R:8666068-8666188 1.0000 120 chr2R:17604648-17604768 1.0000 120 chr3R:6397765-6397885 1.0000 120 chrX:6059296-6059416 1.0000 120 chr2L:3580771-3580891 1.0000 120 chr3R:23486862-23486982 1.0000 120 chr3R:9056517-9056637 1.0000 120 chr3L:17608676-17608796 1.0000 120 chr2R:14494808-14494928 1.0000 120 chrX:2042235-2042355 1.0000 120 chr3L:17563600-17563720 1.0000 120 chr3R:5086871-5086991 1.0000 120 chr2R:24543467-24543587 1.0000 120 chr2L:10276634-10276754 1.0000 120 chr2R:15676008-15676128 1.0000 120 chr2R:23666872-23666992 1.0000 120 chr2R:24896070-24896190 1.0000 120 chr2R:10437930-10438050 1.0000 120 chr3R:21345213-21345333 1.0000 120 chr3L:16800126-16800246 1.0000 120 chr3L:14755380-14755500 1.0000 120 chr2L:18372199-18372319 1.0000 120 chr2L:868341-868461 1.0000 120 chr2L:8083561-8083681 1.0000 120 chr2R:10558196-10558316 1.0000 120 chr3L:16052563-16052683 1.0000 120 chr2L:8361716-8361836 1.0000 120 chr3R:19165814-19165934 1.0000 120 chrX:2289338-2289458 1.0000 120 chr3L:16195554-16195674 1.0000 120 chrX:15811771-15811891 1.0000 120 chrX:9251404-9251524 1.0000 120 chr2L:5305583-5305703 1.0000 120 chrX:16968144-16968264 1.0000 120 chr3R:21972243-21972363 1.0000 120 chr3L:16915936-16916056 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fd85E/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd85E.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.211 G 0.211 T 0.289 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.211 G 0.211 T 0.289 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGAGAGCG MEME-1 width = 8 sites = 56 llr = 496 E-value = 5.6e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 918:a:31 pos.-specific C 1:1:::7: probability G 19:a:a:9 matrix T ::1::::: bits 2.2 * 2.0 * * * 1.8 *** * 1.6 * *** * Relative 1.3 * *** * Entropy 1.1 ** ***** (12.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16052563-16052683 13 1.01e-05 agagagagag agagagcg cgaaagggag chr2R:23666872-23666992 102 1.01e-05 AGCCGTGCCC AGAGAGCG CATGAGCATC chr2R:15676008-15676128 24 1.01e-05 GTCGGTAGAC AGAGAGCG AGAGAGCAGA chr2R:10477911-10478031 71 1.01e-05 AGCAACAAGG AGAGAGCG TGCCCCGTTA chrX:3672193-3672313 111 1.01e-05 agggagagag agagagCG CA chr2L:21899475-21899595 55 1.01e-05 GCGCTGCACG AGAGAGCG TTCAATTGGG chr2R:7745272-7745392 97 1.01e-05 GAAACTATAT AGAGAGCG AAAGCTCTCT chr3R:11647000-11647120 110 1.01e-05 TTTCAGAGAA AGAGAGCG CCG chr3L:11707926-11708046 76 1.01e-05 AAGCagagag agagagcg cgcgagagag chr2R:10227987-10228107 90 1.01e-05 ggagacagcg agagagcg caagagagag chr2R:7623085-7623205 25 1.01e-05 GCAAGAATAC AGAGAGCG GCGAGAGAGA chrX:17878777-17878897 35 1.01e-05 TGTGCGAGCG AGAGAGCG CGCAAGTTCA chr2L:12543247-12543367 92 1.01e-05 GGGAGCTGCA AGAGAGCG AGAGCAGCCT chr3R:10133687-10133807 37 1.01e-05 AGCGAAAGGA AGAGAGCG AGTGCAGCCG chr3L:2490108-2490228 25 1.01e-05 CGAGCGAGCA AGAGAGCG TGGGGGAGAG chr2R:16210423-16210543 13 1.01e-05 TGATCAAAAG AGAGAGCG AAAAACCAGC chr2R:22729326-22729446 104 1.01e-05 TGGGAAACTC AGAGAGCG ACTCACACG chr2L:868341-868461 90 2.39e-05 tgcgacagag agagagag ggagagaaag chr2R:10437930-10438050 81 2.39e-05 GAACGAAGCG AGAGAGAG CAGCTAAATT chr2R:8666068-8666188 27 2.39e-05 CTATAGAGGC AGAGAGAG TCAAAGAGAG chr2R:18799551-18799671 26 2.39e-05 CCAGCGGGCC AGAGAGAG ATGGGTGGTA chr3L:21008928-21009048 84 2.39e-05 ACGTTTTTAA AGAGAGAG GTGGAAAGTC chr3R:24047298-24047418 71 2.39e-05 acacacacgc aGAGAGAG GCGTCTTGCG chrX:15834717-15834837 25 2.39e-05 cgagggagag agagagag agtgagagcg chr3R:11937589-11937709 19 2.39e-05 GACGACAATA AGAGAGAG GGGGCGATGT chr2R:10568699-10568819 44 2.39e-05 TTTTATGTGC AGAGAGAG TTCTgccgcc chr2R:6632404-6632524 71 2.39e-05 gagagcagca agagagag tgagattgag chrX:263896-264016 1 2.39e-05 . AGAGAGAG TTATGCTACT chr3R:5612536-5612656 23 2.39e-05 agcgagagag agagagag aggagaggag chr2R:10558196-10558316 20 5.25e-05 tgtgtTAGTG AGCGAGCG TAGAAGCAGA chr3L:14755380-14755500 38 5.25e-05 CAAGAGCAAC AAAGAGCG ACCGCCATGT chr2L:3580771-3580891 83 5.25e-05 TCGCTCCCTG CGAGAGCG GATGAGAGCG chr3R:23963070-23963190 24 5.25e-05 CGGGACGCAG CGAGAGCG CCAGGCGGAG chr3L:10675859-10675979 56 5.25e-05 GTTTATATTC AAAGAGCG CCATCTCCCT chr2L:13165762-13165882 94 5.25e-05 ACGGACGAGG CGAGAGCG CAAAGCGGAG chr3R:30387099-30387219 4 5.25e-05 TGC AAAGAGCG CCTTGAAATG chr3R:24218750-24218870 7 5.25e-05 TAGCCA AGCGAGCG GCAGACTGAA chr2L:10276634-10276754 55 7.00e-05 aattGTTTAC AGTGAGCG GTGTTtacat chr3R:29682194-29682314 57 7.00e-05 GCCGTTTGGT GGAGAGCG GGAAACTCGG chr3L:9125205-9125325 6 7.00e-05 TAAGC GGAGAGCG GCGGCAACGG chrX:8410545-8410665 52 7.00e-05 AGAGCAGGCG GGAGAGCG AGTAGCGGCA chrX:16968144-16968264 70 1.23e-04 AGCAAAAAAA AAAGAGAG ACGGAGCGCA chr2R:24896070-24896190 30 1.23e-04 AGGAGTATCA AGAGAGCA CCATAATATA chr3L:17563600-17563720 101 1.23e-04 CACATCGCAC AGAGAGCA ACGCACGCTG chr3L:17612090-17612210 18 1.23e-04 aaacaaAGCG CGAGAGAG CAAGATGGAG chr3L:8518937-8519057 48 1.23e-04 GCCAAAGGTA AGAGAGCA AGCAAAACCA chr3L:10332192-10332312 107 1.23e-04 CCGACCGAAG AAAGAGAG GTGCAT chr3L:17973120-17973240 52 1.47e-04 TTCAAAAGAA AGTGAGAG CACTTTGACA chrX:12007038-12007158 2 1.47e-04 g agtgagag cgagGTGTTG chr3R:22140254-22140374 84 1.54e-04 AGTGATGATG AGGGAGCG AAGTGAGGGG chrX:2042235-2042355 78 1.68e-04 CAGCGTGGTG AGAAAGCG ATTGCGGGGG chr2L:6472323-6472443 99 1.68e-04 AATCTGTTTC AGAAAGCG AAAGAGAAAC chrX:2289338-2289458 62 2.23e-04 TGATTATTTC AACGAGCG CAACGttttc chr3L:9614859-9614979 16 2.23e-04 aGTTTCACTC AACGAGCG ATGATCGTTG chr3L:16800126-16800246 61 2.69e-04 CTCACAAGCG AATGAGCG ACGTTCGAGC chr2R:20996726-20996846 109 3.10e-04 aatgtgtgtg tgagagag tgAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16052563-16052683 1e-05 12_[+1]_100 chr2R:23666872-23666992 1e-05 101_[+1]_11 chr2R:15676008-15676128 1e-05 23_[+1]_89 chr2R:10477911-10478031 1e-05 70_[+1]_42 chrX:3672193-3672313 1e-05 110_[+1]_2 chr2L:21899475-21899595 1e-05 54_[+1]_58 chr2R:7745272-7745392 1e-05 96_[+1]_16 chr3R:11647000-11647120 1e-05 109_[+1]_3 chr3L:11707926-11708046 1e-05 75_[+1]_37 chr2R:10227987-10228107 1e-05 89_[+1]_23 chr2R:7623085-7623205 1e-05 24_[+1]_88 chrX:17878777-17878897 1e-05 34_[+1]_78 chr2L:12543247-12543367 1e-05 91_[+1]_21 chr3R:10133687-10133807 1e-05 36_[+1]_76 chr3L:2490108-2490228 1e-05 24_[+1]_88 chr2R:16210423-16210543 1e-05 12_[+1]_100 chr2R:22729326-22729446 1e-05 103_[+1]_9 chr2L:868341-868461 2.4e-05 89_[+1]_23 chr2R:10437930-10438050 2.4e-05 80_[+1]_32 chr2R:8666068-8666188 2.4e-05 26_[+1]_86 chr2R:18799551-18799671 2.4e-05 25_[+1]_87 chr3L:21008928-21009048 2.4e-05 83_[+1]_29 chr3R:24047298-24047418 2.4e-05 70_[+1]_42 chrX:15834717-15834837 2.4e-05 24_[+1]_88 chr3R:11937589-11937709 2.4e-05 18_[+1]_94 chr2R:10568699-10568819 2.4e-05 43_[+1]_69 chr2R:6632404-6632524 2.4e-05 70_[+1]_42 chrX:263896-264016 2.4e-05 [+1]_112 chr3R:5612536-5612656 2.4e-05 22_[+1]_90 chr2R:10558196-10558316 5.2e-05 19_[+1]_93 chr3L:14755380-14755500 5.2e-05 37_[+1]_75 chr2L:3580771-3580891 5.2e-05 82_[+1]_30 chr3R:23963070-23963190 5.2e-05 23_[+1]_89 chr3L:10675859-10675979 5.2e-05 55_[+1]_57 chr2L:13165762-13165882 5.2e-05 93_[+1]_19 chr3R:30387099-30387219 5.2e-05 3_[+1]_109 chr3R:24218750-24218870 5.2e-05 6_[+1]_106 chr2L:10276634-10276754 7e-05 54_[+1]_58 chr3R:29682194-29682314 7e-05 56_[+1]_56 chr3L:9125205-9125325 7e-05 5_[+1]_107 chrX:8410545-8410665 7e-05 51_[+1]_61 chrX:16968144-16968264 0.00012 69_[+1]_43 chr2R:24896070-24896190 0.00012 29_[+1]_83 chr3L:17563600-17563720 0.00012 100_[+1]_12 chr3L:17612090-17612210 0.00012 17_[+1]_95 chr3L:8518937-8519057 0.00012 47_[+1]_65 chr3L:10332192-10332312 0.00012 106_[+1]_6 chr3L:17973120-17973240 0.00015 51_[+1]_61 chrX:12007038-12007158 0.00015 1_[+1]_111 chr3R:22140254-22140374 0.00015 83_[+1]_29 chrX:2042235-2042355 0.00017 77_[+1]_35 chr2L:6472323-6472443 0.00017 98_[+1]_14 chrX:2289338-2289458 0.00022 61_[+1]_51 chr3L:9614859-9614979 0.00022 15_[+1]_97 chr3L:16800126-16800246 0.00027 60_[+1]_52 chr2R:20996726-20996846 0.00031 108_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGCG width=8 seqs=56 chr3L:16052563-16052683 ( 13) AGAGAGCG 1 chr2R:23666872-23666992 ( 102) AGAGAGCG 1 chr2R:15676008-15676128 ( 24) AGAGAGCG 1 chr2R:10477911-10478031 ( 71) AGAGAGCG 1 chrX:3672193-3672313 ( 111) AGAGAGCG 1 chr2L:21899475-21899595 ( 55) AGAGAGCG 1 chr2R:7745272-7745392 ( 97) AGAGAGCG 1 chr3R:11647000-11647120 ( 110) AGAGAGCG 1 chr3L:11707926-11708046 ( 76) AGAGAGCG 1 chr2R:10227987-10228107 ( 90) AGAGAGCG 1 chr2R:7623085-7623205 ( 25) AGAGAGCG 1 chrX:17878777-17878897 ( 35) AGAGAGCG 1 chr2L:12543247-12543367 ( 92) AGAGAGCG 1 chr3R:10133687-10133807 ( 37) AGAGAGCG 1 chr3L:2490108-2490228 ( 25) AGAGAGCG 1 chr2R:16210423-16210543 ( 13) AGAGAGCG 1 chr2R:22729326-22729446 ( 104) AGAGAGCG 1 chr2L:868341-868461 ( 90) AGAGAGAG 1 chr2R:10437930-10438050 ( 81) AGAGAGAG 1 chr2R:8666068-8666188 ( 27) AGAGAGAG 1 chr2R:18799551-18799671 ( 26) AGAGAGAG 1 chr3L:21008928-21009048 ( 84) AGAGAGAG 1 chr3R:24047298-24047418 ( 71) AGAGAGAG 1 chrX:15834717-15834837 ( 25) AGAGAGAG 1 chr3R:11937589-11937709 ( 19) AGAGAGAG 1 chr2R:10568699-10568819 ( 44) AGAGAGAG 1 chr2R:6632404-6632524 ( 71) AGAGAGAG 1 chrX:263896-264016 ( 1) AGAGAGAG 1 chr3R:5612536-5612656 ( 23) AGAGAGAG 1 chr2R:10558196-10558316 ( 20) AGCGAGCG 1 chr3L:14755380-14755500 ( 38) AAAGAGCG 1 chr2L:3580771-3580891 ( 83) CGAGAGCG 1 chr3R:23963070-23963190 ( 24) CGAGAGCG 1 chr3L:10675859-10675979 ( 56) AAAGAGCG 1 chr2L:13165762-13165882 ( 94) CGAGAGCG 1 chr3R:30387099-30387219 ( 4) AAAGAGCG 1 chr3R:24218750-24218870 ( 7) AGCGAGCG 1 chr2L:10276634-10276754 ( 55) AGTGAGCG 1 chr3R:29682194-29682314 ( 57) GGAGAGCG 1 chr3L:9125205-9125325 ( 6) GGAGAGCG 1 chrX:8410545-8410665 ( 52) GGAGAGCG 1 chrX:16968144-16968264 ( 70) AAAGAGAG 1 chr2R:24896070-24896190 ( 30) AGAGAGCA 1 chr3L:17563600-17563720 ( 101) AGAGAGCA 1 chr3L:17612090-17612210 ( 18) CGAGAGAG 1 chr3L:8518937-8519057 ( 48) AGAGAGCA 1 chr3L:10332192-10332312 ( 107) AAAGAGAG 1 chr3L:17973120-17973240 ( 52) AGTGAGAG 1 chrX:12007038-12007158 ( 2) AGTGAGAG 1 chr3R:22140254-22140374 ( 84) AGGGAGCG 1 chrX:2042235-2042355 ( 78) AGAAAGCG 1 chr2L:6472323-6472443 ( 99) AGAAAGCG 1 chrX:2289338-2289458 ( 62) AACGAGCG 1 chr3L:9614859-9614979 ( 16) AACGAGCG 1 chr3L:16800126-16800246 ( 61) AATGAGCG 1 chr2R:20996726-20996846 ( 109) TGAGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1998 E= 5.6e-026 157 -156 -197 -401 -102 -1245 203 -1245 154 -156 -356 -202 -302 -1245 220 -1245 179 -1245 -1245 -1245 -1245 -1245 225 -1245 15 169 -1245 -1245 -243 -1245 217 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 5.6e-026 0.857143 0.071429 0.053571 0.017857 0.142857 0.000000 0.857143 0.000000 0.839286 0.071429 0.017857 0.071429 0.035714 0.000000 0.964286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.321429 0.678571 0.000000 0.000000 0.053571 0.000000 0.946429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGCG MEME-1 regular expression -------------------------------------------------------------------------------- AGAGAG[CA]G -------------------------------------------------------------------------------- Time 8.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-2 width = 8 sites = 52 llr = 439 E-value = 2.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:1 pos.-specific C a:a:9:81 probability G :1:3:::1 matrix T :9:81927 bits 2.2 * * 2.0 * * 1.8 * * 1.6 * * *** Relative 1.3 *** *** Entropy 1.1 ******* (12.2 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15811771-15811891 86 1.38e-05 ctcggtcgct ctctctct ctggcgctct chr2L:868341-868461 112 1.38e-05 agaaagagaT CTCTCTCT A chr2R:23666872-23666992 42 1.38e-05 GCCGCActct ctctctct ctctccctct chr2R:15676008-15676128 4 1.38e-05 TAC CTCTCTCT GTGTCGGTAG chr3L:21008928-21009048 57 1.38e-05 TGCTGCTCCT CTCTCTCT CCCACTCAGA chr2L:21899475-21899595 8 1.38e-05 tctctct ctctctct ttctctctct chrX:12890439-12890559 83 1.38e-05 TAATATAACT CTCTCTCT AATATAGAGA chr2R:17717317-17717437 48 1.38e-05 gctctgtgcg ctctctct TTGCGCAGAC chr3R:24031370-24031490 43 1.38e-05 gctctctctt ctctctct gtcaccctct chr3R:7491597-7491717 83 1.38e-05 TCCAAActct ctctctct ttctctcAGT chr3L:17973120-17973240 97 1.38e-05 CCATAGCCTG CTCTCTCT CTTTCTCTCT chr3R:10109300-10109420 91 1.38e-05 ctctttttct ctctctct cGCCGCCGAA chr3R:24218750-24218870 108 1.38e-05 ctttctcttt ctctctct gtctc chr3R:28861417-28861537 41 1.38e-05 CTGGGAATCC ctctctct ctctctctct chr3R:19165814-19165934 28 2.39e-05 tttgttTATG CTCGCTCT TTGCTCTCTT chr2R:10437930-10438050 48 2.39e-05 GTTCGAACGC CTCGCTCT GCAGTTGGAA chr2R:10477911-10478031 18 2.39e-05 CTCAGTATTT CTCGCTCT CCTCCCACTC chr2R:19467393-19467513 60 2.39e-05 ACTCCGCGCT CTCGCTCT CCGGCACTCC chr3R:10826904-10827024 91 2.39e-05 TCGGAAGACT CTCGCTCT GGCTTTCTGC chr2L:3580771-3580891 55 4.41e-05 ATCGCCACAT CTCTCTCG CCATTGGCGA chr3R:9417801-9417921 50 4.41e-05 TACGCTCTCG CGCTCTCT TCAACGACGA chr2L:9705923-9706043 79 4.41e-05 CGAAGACAGC CGCTCTCT TCTCAGCCAC chr3R:21875183-21875303 45 4.41e-05 ATATAGCCTT CTCTCTCG CTTCTTAGCG chr2L:9176825-9176945 72 4.41e-05 CTCTTTTTGG CTCTCTCG TGTCGCTTTG chr3L:17612090-17612210 107 4.41e-05 CTTTCACTGT CGCTCTCT TGCGGG chr2R:24813773-24813893 37 4.41e-05 GCTCTCTGCC CTCTCTCG AAACGCTCAA chr3L:17563600-17563720 79 7.69e-05 CTCTCACCAA CTCTCTCA CAGACACATC chrX:3841132-3841252 78 7.69e-05 CGGTTTGGTC CTCTCTTT TGTTATACAC chr2R:21713290-21713410 15 7.69e-05 TTTCTTTGCA CTCTCTCA TCTTCTCTCG chr2R:21646782-21646902 79 7.69e-05 TACTTTTTCC CTCTCTTT TTGGTTCTCG chr3R:9158052-9158172 88 7.69e-05 ATAGAAGAGA CTCTCTTT TTATTTCCCA chr3R:6405513-6405633 27 7.69e-05 TTCCGATTTT CTCTCTCA CCTATAAAAC chr3L:12490180-12490300 3 7.69e-05 tt ctctctcA GCAAAGTGCA chr2R:7745272-7745392 109 8.70e-05 AGAGCGAAAG CTCTCTCC CACT chr2R:23659165-23659285 29 8.70e-05 CGCTCTCCGG CTCTCTCC GCCATTCTTC chr3R:21599701-21599821 6 8.70e-05 TGCTG CTCTCTCC GTCTCTTTCG chr3L:7264159-7264279 88 1.06e-04 ACGAAAGATT CTCTTTCT ATGAAATTCT chrM:1782-1902 8 1.06e-04 CCTCCTG CTCTTTCT TTACTATTAG chr2R:24543467-24543587 112 1.21e-04 ACCCGATTCG CTCGCTCG G chr2R:21546449-21546569 95 1.21e-04 TTTACCTGTG CGCGCTCT TTTCGCCGCA chr3R:29088207-29088327 34 1.21e-04 GTGACCACAG CGCGCTCT GTTGTGTTTT chrX:9078436-9078556 80 1.45e-04 TCTGCCGCCA CTCGCTTT CAAAGCTCCA chrX:12007038-12007158 107 1.45e-04 GTGGAAATGG CTCGCTTT AAAGCG chr2R:7758869-7758989 112 1.45e-04 CGGCGGAAAG CTCGCTCA A chr3R:10889364-10889484 49 1.58e-04 TACTCTCCGT CTCTCACT GCGAAAGTGC chr3L:21224810-21224930 80 1.58e-04 CTTTAAacaa ctctcact cgcacacaca chrX:11558575-11558695 5 2.35e-04 TTTC CTCGCACT TTTCTTTCGA chr3R:24047298-24047418 16 3.47e-04 TTTTCTTCGT CTCTTTTT CGcacacaca chr3R:8029623-8029743 41 3.47e-04 TTAGCTTATA CTCTTTCA AAAGGTATTT chr2L:6472323-6472443 53 3.47e-04 CAATCACAGT CTCTTTTT GGTATTAGAT chr3R:22781599-22781719 59 3.47e-04 GTCGCTTCGC CTCTTTTT TTCGGATTTC chr2L:7985179-7985299 110 3.80e-04 AAGGGCACAA CGCGCTTT GCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15811771-15811891 1.4e-05 85_[+2]_27 chr2L:868341-868461 1.4e-05 111_[+2]_1 chr2R:23666872-23666992 1.4e-05 41_[+2]_71 chr2R:15676008-15676128 1.4e-05 3_[+2]_109 chr3L:21008928-21009048 1.4e-05 56_[+2]_56 chr2L:21899475-21899595 1.4e-05 7_[+2]_105 chrX:12890439-12890559 1.4e-05 82_[+2]_30 chr2R:17717317-17717437 1.4e-05 47_[+2]_65 chr3R:24031370-24031490 1.4e-05 42_[+2]_70 chr3R:7491597-7491717 1.4e-05 82_[+2]_30 chr3L:17973120-17973240 1.4e-05 96_[+2]_16 chr3R:10109300-10109420 1.4e-05 90_[+2]_22 chr3R:24218750-24218870 1.4e-05 107_[+2]_5 chr3R:28861417-28861537 1.4e-05 40_[+2]_72 chr3R:19165814-19165934 2.4e-05 27_[+2]_85 chr2R:10437930-10438050 2.4e-05 47_[+2]_65 chr2R:10477911-10478031 2.4e-05 17_[+2]_95 chr2R:19467393-19467513 2.4e-05 59_[+2]_53 chr3R:10826904-10827024 2.4e-05 90_[+2]_22 chr2L:3580771-3580891 4.4e-05 54_[+2]_58 chr3R:9417801-9417921 4.4e-05 49_[+2]_63 chr2L:9705923-9706043 4.4e-05 78_[+2]_34 chr3R:21875183-21875303 4.4e-05 44_[+2]_68 chr2L:9176825-9176945 4.4e-05 71_[+2]_41 chr3L:17612090-17612210 4.4e-05 106_[+2]_6 chr2R:24813773-24813893 4.4e-05 36_[+2]_76 chr3L:17563600-17563720 7.7e-05 78_[+2]_34 chrX:3841132-3841252 7.7e-05 77_[+2]_35 chr2R:21713290-21713410 7.7e-05 14_[+2]_98 chr2R:21646782-21646902 7.7e-05 78_[+2]_34 chr3R:9158052-9158172 7.7e-05 87_[+2]_25 chr3R:6405513-6405633 7.7e-05 26_[+2]_86 chr3L:12490180-12490300 7.7e-05 2_[+2]_110 chr2R:7745272-7745392 8.7e-05 108_[+2]_4 chr2R:23659165-23659285 8.7e-05 28_[+2]_84 chr3R:21599701-21599821 8.7e-05 5_[+2]_107 chr3L:7264159-7264279 0.00011 87_[+2]_25 chrM:1782-1902 0.00011 7_[+2]_105 chr2R:24543467-24543587 0.00012 111_[+2]_1 chr2R:21546449-21546569 0.00012 94_[+2]_18 chr3R:29088207-29088327 0.00012 33_[+2]_79 chrX:9078436-9078556 0.00014 79_[+2]_33 chrX:12007038-12007158 0.00014 106_[+2]_6 chr2R:7758869-7758989 0.00014 111_[+2]_1 chr3R:10889364-10889484 0.00016 48_[+2]_64 chr3L:21224810-21224930 0.00016 79_[+2]_33 chrX:11558575-11558695 0.00023 4_[+2]_108 chr3R:24047298-24047418 0.00035 15_[+2]_97 chr3R:8029623-8029743 0.00035 40_[+2]_72 chr2L:6472323-6472443 0.00035 52_[+2]_60 chr3R:22781599-22781719 0.00035 58_[+2]_54 chr2L:7985179-7985299 0.00038 109_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=52 chrX:15811771-15811891 ( 86) CTCTCTCT 1 chr2L:868341-868461 ( 112) CTCTCTCT 1 chr2R:23666872-23666992 ( 42) CTCTCTCT 1 chr2R:15676008-15676128 ( 4) CTCTCTCT 1 chr3L:21008928-21009048 ( 57) CTCTCTCT 1 chr2L:21899475-21899595 ( 8) CTCTCTCT 1 chrX:12890439-12890559 ( 83) CTCTCTCT 1 chr2R:17717317-17717437 ( 48) CTCTCTCT 1 chr3R:24031370-24031490 ( 43) CTCTCTCT 1 chr3R:7491597-7491717 ( 83) CTCTCTCT 1 chr3L:17973120-17973240 ( 97) CTCTCTCT 1 chr3R:10109300-10109420 ( 91) CTCTCTCT 1 chr3R:24218750-24218870 ( 108) CTCTCTCT 1 chr3R:28861417-28861537 ( 41) CTCTCTCT 1 chr3R:19165814-19165934 ( 28) CTCGCTCT 1 chr2R:10437930-10438050 ( 48) CTCGCTCT 1 chr2R:10477911-10478031 ( 18) CTCGCTCT 1 chr2R:19467393-19467513 ( 60) CTCGCTCT 1 chr3R:10826904-10827024 ( 91) CTCGCTCT 1 chr2L:3580771-3580891 ( 55) CTCTCTCG 1 chr3R:9417801-9417921 ( 50) CGCTCTCT 1 chr2L:9705923-9706043 ( 79) CGCTCTCT 1 chr3R:21875183-21875303 ( 45) CTCTCTCG 1 chr2L:9176825-9176945 ( 72) CTCTCTCG 1 chr3L:17612090-17612210 ( 107) CGCTCTCT 1 chr2R:24813773-24813893 ( 37) CTCTCTCG 1 chr3L:17563600-17563720 ( 79) CTCTCTCA 1 chrX:3841132-3841252 ( 78) CTCTCTTT 1 chr2R:21713290-21713410 ( 15) CTCTCTCA 1 chr2R:21646782-21646902 ( 79) CTCTCTTT 1 chr3R:9158052-9158172 ( 88) CTCTCTTT 1 chr3R:6405513-6405633 ( 27) CTCTCTCA 1 chr3L:12490180-12490300 ( 3) CTCTCTCA 1 chr2R:7745272-7745392 ( 109) CTCTCTCC 1 chr2R:23659165-23659285 ( 29) CTCTCTCC 1 chr3R:21599701-21599821 ( 6) CTCTCTCC 1 chr3L:7264159-7264279 ( 88) CTCTTTCT 1 chrM:1782-1902 ( 8) CTCTTTCT 1 chr2R:24543467-24543587 ( 112) CTCGCTCG 1 chr2R:21546449-21546569 ( 95) CGCGCTCT 1 chr3R:29088207-29088327 ( 34) CGCGCTCT 1 chrX:9078436-9078556 ( 80) CTCGCTTT 1 chrX:12007038-12007158 ( 107) CTCGCTTT 1 chr2R:7758869-7758989 ( 112) CTCGCTCA 1 chr3R:10889364-10889484 ( 49) CTCTCACT 1 chr3L:21224810-21224930 ( 80) CTCTCACT 1 chrX:11558575-11558695 ( 5) CTCGCACT 1 chr3R:24047298-24047418 ( 16) CTCTTTTT 1 chr3R:8029623-8029743 ( 41) CTCTTTCA 1 chr2L:6472323-6472443 ( 53) CTCTTTTT 1 chr3R:22781599-22781719 ( 59) CTCTTTTT 1 chr2L:7985179-7985299 ( 110) CGCGCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 2.6e-011 -1234 224 -1234 -1234 -1234 -1234 -87 161 -1234 224 -1234 -1234 -1234 -1234 25 138 -1234 207 -1234 -132 -233 -1234 -1234 170 -1234 197 -1234 -74 -133 -187 -113 134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.6e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.115385 0.884615 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.884615 0.000000 0.115385 0.057692 0.000000 0.000000 0.942308 0.000000 0.826923 0.000000 0.173077 0.115385 0.057692 0.096154 0.730769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTC[TG]CTCT -------------------------------------------------------------------------------- Time 15.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMAAAA MEME-3 width = 8 sites = 82 llr = 596 E-value = 6.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9a968a88 pos.-specific C 1::4::22 probability G ::1::::: matrix T ::::2::: bits 2.2 2.0 1.8 * * 1.6 * * Relative 1.3 *** * Entropy 1.1 *** **** (10.5 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21972243-21972363 64 4.87e-05 TTTGCACAAA AAAAAAAA CGGCGACGTC chr3L:16195554-16195674 63 4.87e-05 CCGCGGaaaa aaaaaaaa acaaaaataa chr3L:16052563-16052683 48 4.87e-05 AACAAAGTGT AAAAAAAA CAAGCGGCTG chr2R:10558196-10558316 84 4.87e-05 TAATTGATTT AAAAAAAA GAAAAGCAAA chr2R:20996726-20996846 32 4.87e-05 CGAAATAATA AAAAAAAA ACACGCACGC chr3L:7264159-7264279 66 4.87e-05 GCACACAGAG AAAAAAAA GGTGACGAAA chr2L:20912997-20913117 18 4.87e-05 CAATGGGCGA AAAAAAAA CAACTACGCG chr3L:11298426-11298546 84 4.87e-05 ATTAAAGTCT AAAAAAAA CTTTGAAAAC chr2R:11033654-11033774 16 4.87e-05 CACTGATAAA AAAAAAAA ACTAAAGTTG chr2R:7745272-7745392 54 4.87e-05 GCCTGCTCTG AAAAAAAA TAACTCCAAT chr2R:19616306-19616426 67 4.87e-05 ataaataaat aaaaaaaa aaatgcgaaa chr3R:11647000-11647120 66 4.87e-05 gaaacgaaag aaaaaaaa acacaaaatc chr3R:16526796-16526916 47 4.87e-05 ATTCTTGACC AAAAAAAA AATCATTTCA chr2R:24955710-24955830 108 4.87e-05 TAAAAAGTGA AAAAAAAA AACAG chr2R:14986967-14987087 5 4.87e-05 aaaa aaaaaaaa aaaCATTCCC chr3L:13263889-13264009 66 4.87e-05 CAAAAAAGCA AAAAAAAA GTAACTTAAG chr3L:9468020-9468140 61 4.87e-05 AAGTTTGCaa aaaaaaaa caaggaaaaa chr2L:19576840-19576960 72 4.87e-05 CGGCCATAGA AAAAAAAA ACACATATAC chr3R:31680039-31680159 26 4.87e-05 TGGTCACACG AAAAAAAA CTCTAGATTT chr3R:24595614-24595734 91 4.87e-05 GAGTGGCCAA AAAAAAAA AAAATATACT chr3R:10133687-10133807 73 4.87e-05 GAGCGAATAC AAAAAAAA TTACTTCACA chr3L:7804810-7804930 53 4.87e-05 TAACGCTCGA AAAAAAAA AGAATAAATA chr3L:16042684-16042804 40 4.87e-05 agaaaactca aaaaaaaa aaaaaaacaa chr3L:1458089-1458209 23 4.87e-05 GCACTGAGAA AAAAAAAA GAAAAAAAGT chr3L:17563600-17563720 46 8.42e-05 ATCTGAATAA AAACAAAA GTAAGCAGCG chr3L:14622482-14622602 109 8.42e-05 TTTAAGTTTC AAACAAAA CTCG chr2L:21899475-21899595 75 8.42e-05 CAATTGGGAG aaacaaaa acgcaaacaa chr3R:9417801-9417921 90 8.42e-05 TTCTATACAG AAACAAAA ATCTCAGTCA chr3R:30466000-30466120 42 8.42e-05 GGCGGCAGCA AAACAAAA TCAGTTCCAG chr3L:11707926-11708046 35 8.42e-05 atcaaaataa aaacaaaa GTTAGTCCAT chr3L:17612090-17612210 2 8.42e-05 a aaacaaaa acaaAGCGCG chr3L:8518937-8519057 10 8.42e-05 TCTGCAATT AAACAAAA TGAGTTCTGG chr3R:18787339-18787459 3 1.20e-04 AC AAAAAACA GGGGACACCT chr3L:2831767-2831887 53 1.20e-04 ACGCCAGAGA AAAAAACA GGCAAGTCAC chr3R:8969004-8969124 58 1.20e-04 TAATGTACTT AAAAAACA TTTTCAGAAA chr3L:10736973-10737093 59 1.20e-04 CTGTCCACTG AAAAAACA ATTGCACTGa chr3L:7993991-7994111 83 1.20e-04 TAAATAGTTT AAAAAACA ATGAAGCAGT chr2R:15676008-15676128 75 1.81e-04 ATACCAGCAA AAACAACA ACATGGCCAG chrX:2042235-2042355 55 1.81e-04 GCATTTCGCG AAACAACA GCTGACAGCG chr2L:11155831-11155951 93 1.81e-04 TTTGCACGCA AAACAACA ATTTTAACCC chr2R:20831777-20831897 42 1.81e-04 GCTAGAGGTC AAAAAAAC CGAAAGATAT chr3R:6405513-6405633 41 1.81e-04 CTCACCTATA AAACAACA ACTGCCGCAC chr3L:3035437-3035557 99 1.81e-04 ATTTCTCCAA AAACAACA AATACAGAGA chrX:16968144-16968264 62 2.91e-04 CAAGCAAAAG CAAAAAAA AAAGAGAGAC chr2R:24543467-24543587 72 2.91e-04 TCAAAATCGA AAAATAAA CCGTTTCGCT chr2R:8666068-8666188 107 2.91e-04 AAAAGTTCAG AAACAAAC TTAACG chrX:14953156-14953276 69 2.91e-04 AGCGGGACCA AAACAAAC TCCAAAATGT chr3L:15209041-15209161 111 2.91e-04 TTTATATGGT AAAATAAA TA chrM:8663-8783 89 2.91e-04 AGTTTGACGT AAACAAAC TAATCTAACT chr3L:9551308-9551428 15 2.91e-04 GGAGCCAGAT AAACAAAC GAGGCAACAA chrX:11558575-11558695 75 2.91e-04 CCGAAACTGA AAAATAAA AGCGTTTGGC chr3R:29758437-29758557 98 2.91e-04 ATTAAGATAT AAAATAAA ACGTGTATTT chr2R:17462187-17462307 14 2.91e-04 acacacacac aAACAAAC AAACACTCCT chr3L:3400833-3400953 73 2.91e-04 CGCTCGAGAT AAACAAAC TGCCAGTTCA chr3L:12490180-12490300 43 2.91e-04 TGGAGAAGGG AAAATAAA CCACAAAGCT chr3R:11614588-11614708 80 2.91e-04 ATTGCATGTC AAAATAAA TCATGCCAAG chr2L:4348682-4348802 77 3.53e-04 AAGCCAGACC AAACTAAA ATCAGTGCAG chr3R:30387099-30387219 25 3.53e-04 TGAAATGTAA CAACAAAA AGTCAAGCTT chrX:9251404-9251524 89 3.88e-04 AAATAATTGC AAGAAAAA AGAGTTTAAC chr3R:9056517-9056637 50 3.88e-04 AAAATAAAGC AAGAAAAA GAATCAACAA chrM:7418-7538 113 3.88e-04 GGTAACCAAG AAGAAAAA chrX:15834717-15834837 63 4.24e-04 gagaATTTGA AAAGAAAA GAGGCAGCAT chr3L:7528947-7529067 99 4.24e-04 aaaatataga aaagaaaa CTAGTTGGGG chr3R:11977169-11977289 90 4.24e-04 ACAGGCGATG AAAGAAAA CTGGAAATAT chr3L:8912417-8912537 110 4.50e-04 AGCAGCTCAG AAGCAAAA AAC chr2R:10227987-10228107 67 4.50e-04 GGCTCCCCAA AAGCAAAa gagcgggaga chrX:3841132-3841252 10 5.56e-04 AAGcacaca caaaaaca cacacacaca chr2L:7611711-7611831 7 5.56e-04 TATTGA AAAATACA TAAAAACATA chrX:6059296-6059416 3 6.62e-04 TC AAAATAAC CCACTCTATA chr2L:10842447-10842567 2 6.62e-04 C AAAATAAC TTATTAAAAA chr3L:6457999-6458119 53 6.62e-04 TTTCCACGAC CAAAAAAC TTATATTGTG chr3R:26230088-26230208 17 6.62e-04 GCAGTGGCAG CAACAACA GCAACTGCAG chrX:14134097-14134217 2 6.62e-04 C CAAAAAAC GTTTAAAATA chrX:10927322-10927442 24 6.62e-04 acagcagcaa caacaaca gcagctgcag chr2R:7623085-7623205 78 7.43e-04 AGAGAACCGA CAACAAAC GGTAAAGCTG chrM:12197-12317 14 7.43e-04 AATTAAAGCT AAACTAAC TTCATAAGAA chrM:11248-11368 107 7.43e-04 CGATCTATTC CAAATAAA TTAGGA chr3R:14007726-14007846 82 8.21e-04 GCAAGTTTTG CAACTAAA GTTGAGACTT chr3R:30461711-30461831 38 8.21e-04 GTGACATTAT AAAGAACA TGTGTATTGG chr2L:2203012-2203132 76 1.08e-03 CTTACGAGAG CAGCAAAA ATGAAGAACC chrM:7083-7203 4 1.08e-03 ATA AAGCTAAA TTAGATACGT chrM:13266-13386 101 1.62e-03 ATATAATTCA AAAAGACA TGTTTTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21972243-21972363 4.9e-05 63_[+3]_49 chr3L:16195554-16195674 4.9e-05 62_[+3]_50 chr3L:16052563-16052683 4.9e-05 47_[+3]_65 chr2R:10558196-10558316 4.9e-05 83_[+3]_29 chr2R:20996726-20996846 4.9e-05 31_[+3]_81 chr3L:7264159-7264279 4.9e-05 65_[+3]_47 chr2L:20912997-20913117 4.9e-05 17_[+3]_95 chr3L:11298426-11298546 4.9e-05 83_[+3]_29 chr2R:11033654-11033774 4.9e-05 15_[+3]_97 chr2R:7745272-7745392 4.9e-05 53_[+3]_59 chr2R:19616306-19616426 4.9e-05 66_[+3]_46 chr3R:11647000-11647120 4.9e-05 65_[+3]_47 chr3R:16526796-16526916 4.9e-05 46_[+3]_66 chr2R:24955710-24955830 4.9e-05 107_[+3]_5 chr2R:14986967-14987087 4.9e-05 4_[+3]_108 chr3L:13263889-13264009 4.9e-05 65_[+3]_47 chr3L:9468020-9468140 4.9e-05 60_[+3]_52 chr2L:19576840-19576960 4.9e-05 71_[+3]_41 chr3R:31680039-31680159 4.9e-05 25_[+3]_87 chr3R:24595614-24595734 4.9e-05 90_[+3]_22 chr3R:10133687-10133807 4.9e-05 72_[+3]_40 chr3L:7804810-7804930 4.9e-05 52_[+3]_60 chr3L:16042684-16042804 4.9e-05 39_[+3]_73 chr3L:1458089-1458209 4.9e-05 22_[+3]_90 chr3L:17563600-17563720 8.4e-05 45_[+3]_67 chr3L:14622482-14622602 8.4e-05 108_[+3]_4 chr2L:21899475-21899595 8.4e-05 74_[+3]_38 chr3R:9417801-9417921 8.4e-05 89_[+3]_23 chr3R:30466000-30466120 8.4e-05 41_[+3]_71 chr3L:11707926-11708046 8.4e-05 34_[+3]_78 chr3L:17612090-17612210 8.4e-05 1_[+3]_111 chr3L:8518937-8519057 8.4e-05 9_[+3]_103 chr3R:18787339-18787459 0.00012 2_[+3]_110 chr3L:2831767-2831887 0.00012 52_[+3]_60 chr3R:8969004-8969124 0.00012 57_[+3]_55 chr3L:10736973-10737093 0.00012 58_[+3]_54 chr3L:7993991-7994111 0.00012 82_[+3]_30 chr2R:15676008-15676128 0.00018 74_[+3]_38 chrX:2042235-2042355 0.00018 54_[+3]_58 chr2L:11155831-11155951 0.00018 92_[+3]_20 chr2R:20831777-20831897 0.00018 41_[+3]_71 chr3R:6405513-6405633 0.00018 40_[+3]_72 chr3L:3035437-3035557 0.00018 98_[+3]_14 chrX:16968144-16968264 0.00029 61_[+3]_51 chr2R:24543467-24543587 0.00029 71_[+3]_41 chr2R:8666068-8666188 0.00029 106_[+3]_6 chrX:14953156-14953276 0.00029 68_[+3]_44 chr3L:15209041-15209161 0.00029 110_[+3]_2 chrM:8663-8783 0.00029 88_[+3]_24 chr3L:9551308-9551428 0.00029 14_[+3]_98 chrX:11558575-11558695 0.00029 74_[+3]_38 chr3R:29758437-29758557 0.00029 97_[+3]_15 chr2R:17462187-17462307 0.00029 13_[+3]_99 chr3L:3400833-3400953 0.00029 72_[+3]_40 chr3L:12490180-12490300 0.00029 42_[+3]_70 chr3R:11614588-11614708 0.00029 79_[+3]_33 chr2L:4348682-4348802 0.00035 76_[+3]_36 chr3R:30387099-30387219 0.00035 24_[+3]_88 chrX:9251404-9251524 0.00039 88_[+3]_24 chr3R:9056517-9056637 0.00039 49_[+3]_63 chrM:7418-7538 0.00039 112_[+3] chrX:15834717-15834837 0.00042 62_[+3]_50 chr3L:7528947-7529067 0.00042 98_[+3]_14 chr3R:11977169-11977289 0.00042 89_[+3]_23 chr3L:8912417-8912537 0.00045 109_[+3]_3 chr2R:10227987-10228107 0.00045 66_[+3]_46 chrX:3841132-3841252 0.00056 9_[+3]_103 chr2L:7611711-7611831 0.00056 6_[+3]_106 chrX:6059296-6059416 0.00066 2_[+3]_110 chr2L:10842447-10842567 0.00066 1_[+3]_111 chr3L:6457999-6458119 0.00066 52_[+3]_60 chr3R:26230088-26230208 0.00066 16_[+3]_96 chrX:14134097-14134217 0.00066 1_[+3]_111 chrX:10927322-10927442 0.00066 23_[+3]_89 chr2R:7623085-7623205 0.00074 77_[+3]_35 chrM:12197-12317 0.00074 13_[+3]_99 chrM:11248-11368 0.00074 106_[+3]_6 chr3R:14007726-14007846 0.00082 81_[+3]_31 chr3R:30461711-30461831 0.00082 37_[+3]_75 chr2L:2203012-2203132 0.0011 75_[+3]_37 chrM:7083-7203 0.0011 3_[+3]_109 chrM:13266-13386 0.0016 100_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMAAAA width=8 seqs=82 chr3R:21972243-21972363 ( 64) AAAAAAAA 1 chr3L:16195554-16195674 ( 63) AAAAAAAA 1 chr3L:16052563-16052683 ( 48) AAAAAAAA 1 chr2R:10558196-10558316 ( 84) AAAAAAAA 1 chr2R:20996726-20996846 ( 32) AAAAAAAA 1 chr3L:7264159-7264279 ( 66) AAAAAAAA 1 chr2L:20912997-20913117 ( 18) AAAAAAAA 1 chr3L:11298426-11298546 ( 84) AAAAAAAA 1 chr2R:11033654-11033774 ( 16) AAAAAAAA 1 chr2R:7745272-7745392 ( 54) AAAAAAAA 1 chr2R:19616306-19616426 ( 67) AAAAAAAA 1 chr3R:11647000-11647120 ( 66) AAAAAAAA 1 chr3R:16526796-16526916 ( 47) AAAAAAAA 1 chr2R:24955710-24955830 ( 108) AAAAAAAA 1 chr2R:14986967-14987087 ( 5) AAAAAAAA 1 chr3L:13263889-13264009 ( 66) AAAAAAAA 1 chr3L:9468020-9468140 ( 61) AAAAAAAA 1 chr2L:19576840-19576960 ( 72) AAAAAAAA 1 chr3R:31680039-31680159 ( 26) AAAAAAAA 1 chr3R:24595614-24595734 ( 91) AAAAAAAA 1 chr3R:10133687-10133807 ( 73) AAAAAAAA 1 chr3L:7804810-7804930 ( 53) AAAAAAAA 1 chr3L:16042684-16042804 ( 40) AAAAAAAA 1 chr3L:1458089-1458209 ( 23) AAAAAAAA 1 chr3L:17563600-17563720 ( 46) AAACAAAA 1 chr3L:14622482-14622602 ( 109) AAACAAAA 1 chr2L:21899475-21899595 ( 75) AAACAAAA 1 chr3R:9417801-9417921 ( 90) AAACAAAA 1 chr3R:30466000-30466120 ( 42) AAACAAAA 1 chr3L:11707926-11708046 ( 35) AAACAAAA 1 chr3L:17612090-17612210 ( 2) AAACAAAA 1 chr3L:8518937-8519057 ( 10) AAACAAAA 1 chr3R:18787339-18787459 ( 3) AAAAAACA 1 chr3L:2831767-2831887 ( 53) AAAAAACA 1 chr3R:8969004-8969124 ( 58) AAAAAACA 1 chr3L:10736973-10737093 ( 59) AAAAAACA 1 chr3L:7993991-7994111 ( 83) AAAAAACA 1 chr2R:15676008-15676128 ( 75) AAACAACA 1 chrX:2042235-2042355 ( 55) AAACAACA 1 chr2L:11155831-11155951 ( 93) AAACAACA 1 chr2R:20831777-20831897 ( 42) AAAAAAAC 1 chr3R:6405513-6405633 ( 41) AAACAACA 1 chr3L:3035437-3035557 ( 99) AAACAACA 1 chrX:16968144-16968264 ( 62) CAAAAAAA 1 chr2R:24543467-24543587 ( 72) AAAATAAA 1 chr2R:8666068-8666188 ( 107) AAACAAAC 1 chrX:14953156-14953276 ( 69) AAACAAAC 1 chr3L:15209041-15209161 ( 111) AAAATAAA 1 chrM:8663-8783 ( 89) AAACAAAC 1 chr3L:9551308-9551428 ( 15) AAACAAAC 1 chrX:11558575-11558695 ( 75) AAAATAAA 1 chr3R:29758437-29758557 ( 98) AAAATAAA 1 chr2R:17462187-17462307 ( 14) AAACAAAC 1 chr3L:3400833-3400953 ( 73) AAACAAAC 1 chr3L:12490180-12490300 ( 43) AAAATAAA 1 chr3R:11614588-11614708 ( 80) AAAATAAA 1 chr2L:4348682-4348802 ( 77) AAACTAAA 1 chr3R:30387099-30387219 ( 25) CAACAAAA 1 chrX:9251404-9251524 ( 89) AAGAAAAA 1 chr3R:9056517-9056637 ( 50) AAGAAAAA 1 chrM:7418-7538 ( 113) AAGAAAAA 1 chrX:15834717-15834837 ( 63) AAAGAAAA 1 chr3L:7528947-7529067 ( 99) AAAGAAAA 1 chr3R:11977169-11977289 ( 90) AAAGAAAA 1 chr3L:8912417-8912537 ( 110) AAGCAAAA 1 chr2R:10227987-10228107 ( 67) AAGCAAAA 1 chrX:3841132-3841252 ( 10) CAAAAACA 1 chr2L:7611711-7611831 ( 7) AAAATACA 1 chrX:6059296-6059416 ( 3) AAAATAAC 1 chr2L:10842447-10842567 ( 2) AAAATAAC 1 chr3L:6457999-6458119 ( 53) CAAAAAAC 1 chr3R:26230088-26230208 ( 17) CAACAACA 1 chrX:14134097-14134217 ( 2) CAAAAAAC 1 chrX:10927322-10927442 ( 24) CAACAACA 1 chr2R:7623085-7623205 ( 78) CAACAAAC 1 chrM:12197-12317 ( 14) AAACTAAC 1 chrM:11248-11368 ( 107) CAAATAAA 1 chr3R:14007726-14007846 ( 82) CAACTAAA 1 chr3R:30461711-30461831 ( 38) AAAGAACA 1 chr2L:2203012-2203132 ( 76) CAGCAAAA 1 chrM:7083-7203 ( 4) AAGCTAAA 1 chrM:13266-13386 ( 101) AAAAGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3915 E= 6.2e-002 158 -65 -1300 -1300 179 -1300 -1300 -1300 166 -1300 -130 -1300 102 79 -211 -1300 150 -1300 -411 -76 179 -1300 -1300 -1300 148 -11 -1300 -1300 154 -41 -1300 -1300 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 6.2e-002 0.865854 0.134146 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.914634 0.000000 0.085366 0.000000 0.585366 0.365854 0.048780 0.000000 0.817073 0.000000 0.012195 0.170732 1.000000 0.000000 0.000000 0.000000 0.804878 0.195122 0.000000 0.000000 0.841463 0.158537 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-3 regular expression -------------------------------------------------------------------------------- AAA[AC]AAAA -------------------------------------------------------------------------------- Time 21.20 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-4 width = 8 sites = 30 llr = 270 E-value = 6.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 7:a:919: pos.-specific C :a:a:9:8 probability G 3:::1::1 matrix T ::::::12 bits 2.2 * * 2.0 * * 1.8 *** * 1.6 *** * Relative 1.3 ***** Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9692013-9692133 76 1.38e-05 AAACCGAATT ACACACAC AAAACGAATT chr2L:21899475-21899595 110 1.38e-05 ccacacacgc acacacac cag chr3R:24047298-24047418 27 1.38e-05 TCTTTTTCGc acacacac tgacacatta chrX:3841132-3841252 19 1.38e-05 acaaaaacac acacacac aggcacaGCA chr3R:24031370-24031490 108 1.38e-05 CTATGTGCAC ACACACAC ATAGA chr3R:22781599-22781719 14 1.38e-05 acacacgcac acacacac acaTAGAGGC chr3L:21224810-21224930 95 1.38e-05 actcgcacac acacacac gcacacactc chr3R:6405513-6405633 64 1.38e-05 CGCACTCAGC ACACACAC GCACACACTC chr2R:17462187-17462307 4 1.38e-05 cac acacacac acaAACAAAC chr3L:10736973-10737093 87 1.38e-05 catcacacac acacacac agacaaacac chr3R:10109300-10109420 42 1.38e-05 CCGCCGCCTC ACACACAC ATGACCACCA chr2R:14928155-14928275 61 2.39e-05 CCCGGCCAAG GCACACAC TCTCTGCCGC chrX:17495470-17495590 104 2.39e-05 TCCCCTCCCC GCACACAC CCTTTGCCA chrX:2469994-2470114 9 2.39e-05 CAGACTCC GCACACAC GTCTTTCTTG chr2L:10276634-10276754 107 5.67e-05 gcagtcacgt acacacat gcacgc chr2R:14140752-14140872 107 5.67e-05 GATCACGCGA ACACACAT GCTGCA chrX:12007038-12007158 65 5.67e-05 CCATATGTGT ACACACAT ACATGCATAG chr2L:20083543-20083663 81 5.67e-05 CTGGATATTT ACACACAT ATGCATGCTA chr3L:10332192-10332312 79 5.67e-05 CATTTCGCAA ACACACTC ACACCAGTCG chrX:4175999-4176119 89 5.67e-05 GCCCAACTCG ACACACTC GCTTCCTTTC chrM:4675-4795 67 5.67e-05 ATTAATGTCT ACACACTC AAATCACCCT chr2R:20996726-20996846 40 6.68e-05 TAAAAAAAAA ACACGCAC GCAtgtgttg chr2L:19576840-19576960 88 8.06e-05 AAACACATAT ACACACAG GAGAATTTAC chr3L:17973120-17973240 71 1.05e-04 ACTTTGACAA GCACACAT AGCCATACCC chr3R:15293642-15293762 103 1.05e-04 GATTATCTTT GCACACTC CATTATAACA chr2R:18799551-18799671 5 1.12e-04 TCAC GCACGCAC TTGCCAGCGG chr3L:10675859-10675979 75 1.12e-04 CATCTCCCTC GCACGCAC AACCCAGCCA chr3L:11707926-11708046 1 1.31e-04 . acacaaac tgaaccagaa chr3L:9468020-9468140 30 1.31e-04 TCACGCACAA ACACAAAC CATGTCTGCC chr3L:7264159-7264279 56 1.41e-04 CACTGCATTC GCACACAG AGAAAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9692013-9692133 1.4e-05 75_[+4]_37 chr2L:21899475-21899595 1.4e-05 109_[+4]_3 chr3R:24047298-24047418 1.4e-05 26_[+4]_86 chrX:3841132-3841252 1.4e-05 18_[+4]_94 chr3R:24031370-24031490 1.4e-05 107_[+4]_5 chr3R:22781599-22781719 1.4e-05 13_[+4]_99 chr3L:21224810-21224930 1.4e-05 94_[+4]_18 chr3R:6405513-6405633 1.4e-05 63_[+4]_49 chr2R:17462187-17462307 1.4e-05 3_[+4]_109 chr3L:10736973-10737093 1.4e-05 86_[+4]_26 chr3R:10109300-10109420 1.4e-05 41_[+4]_71 chr2R:14928155-14928275 2.4e-05 60_[+4]_52 chrX:17495470-17495590 2.4e-05 103_[+4]_9 chrX:2469994-2470114 2.4e-05 8_[+4]_104 chr2L:10276634-10276754 5.7e-05 106_[+4]_6 chr2R:14140752-14140872 5.7e-05 106_[+4]_6 chrX:12007038-12007158 5.7e-05 64_[+4]_48 chr2L:20083543-20083663 5.7e-05 80_[+4]_32 chr3L:10332192-10332312 5.7e-05 78_[+4]_34 chrX:4175999-4176119 5.7e-05 88_[+4]_24 chrM:4675-4795 5.7e-05 66_[+4]_46 chr2R:20996726-20996846 6.7e-05 39_[+4]_73 chr2L:19576840-19576960 8.1e-05 87_[+4]_25 chr3L:17973120-17973240 0.0001 70_[+4]_42 chr3R:15293642-15293762 0.0001 102_[+4]_10 chr2R:18799551-18799671 0.00011 4_[+4]_108 chr3L:10675859-10675979 0.00011 74_[+4]_38 chr3L:11707926-11708046 0.00013 [+4]_112 chr3L:9468020-9468140 0.00013 29_[+4]_83 chr3L:7264159-7264279 0.00014 55_[+4]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=30 chr2R:9692013-9692133 ( 76) ACACACAC 1 chr2L:21899475-21899595 ( 110) ACACACAC 1 chr3R:24047298-24047418 ( 27) ACACACAC 1 chrX:3841132-3841252 ( 19) ACACACAC 1 chr3R:24031370-24031490 ( 108) ACACACAC 1 chr3R:22781599-22781719 ( 14) ACACACAC 1 chr3L:21224810-21224930 ( 95) ACACACAC 1 chr3R:6405513-6405633 ( 64) ACACACAC 1 chr2R:17462187-17462307 ( 4) ACACACAC 1 chr3L:10736973-10737093 ( 87) ACACACAC 1 chr3R:10109300-10109420 ( 42) ACACACAC 1 chr2R:14928155-14928275 ( 61) GCACACAC 1 chrX:17495470-17495590 ( 104) GCACACAC 1 chrX:2469994-2470114 ( 9) GCACACAC 1 chr2L:10276634-10276754 ( 107) ACACACAT 1 chr2R:14140752-14140872 ( 107) ACACACAT 1 chrX:12007038-12007158 ( 65) ACACACAT 1 chr2L:20083543-20083663 ( 81) ACACACAT 1 chr3L:10332192-10332312 ( 79) ACACACTC 1 chrX:4175999-4176119 ( 89) ACACACTC 1 chrM:4675-4795 ( 67) ACACACTC 1 chr2R:20996726-20996846 ( 40) ACACGCAC 1 chr2L:19576840-19576960 ( 88) ACACACAG 1 chr3L:17973120-17973240 ( 71) GCACACAT 1 chr3R:15293642-15293762 ( 103) GCACACTC 1 chr2R:18799551-18799671 ( 5) GCACGCAC 1 chr3L:10675859-10675979 ( 75) GCACGCAC 1 chr3L:11707926-11708046 ( 1) ACACAAAC 1 chr3L:9468020-9468140 ( 30) ACACAAAC 1 chr3L:7264159-7264279 ( 56) GCACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 6.3e-001 134 -1155 34 -1155 -1155 224 -1155 -1155 179 -1155 -1155 -1155 -1155 224 -1155 -1155 164 -1155 -107 -1155 -212 214 -1155 -1155 158 -1155 -1155 -112 -1155 186 -166 -79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 6.3e-001 0.733333 0.000000 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.066667 0.933333 0.000000 0.000000 0.866667 0.000000 0.000000 0.133333 0.000000 0.766667 0.066667 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-4 regular expression -------------------------------------------------------------------------------- [AG]CACACAC -------------------------------------------------------------------------------- Time 27.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMGCWGC MEME-5 width = 8 sites = 62 llr = 479 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :142:3:: pos.-specific C :83:92:a probability G a12811a: matrix T ::1::4:: bits 2.2 * * 2.0 * ** 1.8 * * ** 1.6 * ** ** Relative 1.3 * ** ** Entropy 1.1 ** ** ** (11.2 bits) 0.9 ** ** ** 0.7 ** ** ** 0.4 ** ** ** 0.2 ** ** ** 0.0 -------- Multilevel GCAGCTGC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9251404-9251524 26 7.37e-06 ACCAGGAAAT GCAGCTGC GGCCACAATA chr2R:14928155-14928275 29 7.37e-06 ACGAAGTTGT GCAGCTGC CGGGAAAAAT chrM:5336-5456 111 7.37e-06 TGGTTTTGAA GCAGCTGC AT chr3L:10332192-10332312 51 7.37e-06 CATGTTGACT GCAGCTGC TGCAGAATTG chrX:10927322-10927442 32 7.37e-06 aacaacaaca gcagctgc agcaacaaca chr2R:10568699-10568819 59 1.28e-05 GAGTTCTgcc gccgctgc tgccgccgcc chr2L:4797764-4797884 106 1.28e-05 GGTTTTCCGC GCCGCTGC AGCCTCA chr2R:14031568-14031688 27 1.28e-05 tgctgctgct gccgctgc CAgcgtcgct chr3L:16800126-16800246 82 2.01e-05 TTCGAGCAGC GCAGCAGC GTAGAGCCCC chr2R:10227987-10228107 22 2.01e-05 CGCCGGCGGC GCAGCAGC AGCGCCGCAA chr2R:14986967-14987087 73 2.01e-05 GAAATGTTTA GCAGCAGC GGACACGATA chr3L:21894905-21895025 39 2.01e-05 GAcagcagcg gcagcagc agcagcagcc chrX:8410545-8410665 23 2.01e-05 GAGAGACAGC GCAGCAGC GATATAGAGT chrX:2289338-2289458 18 3.63e-05 TGTTGTTGTT GCGGCTGC TTTTTTTTTT chr3L:16052563-16052683 59 3.63e-05 AAAAAAACAA GCGGCTGC TAAAATGCCC chr3R:11977169-11977289 34 3.63e-05 CGAAGCAAAT GCGGCTGC GCAGCGCATA chr2R:7745272-7745392 38 4.02e-05 TGACGTCGAC GCCGCCGC CTGCTCTGAA chr3R:11647000-11647120 11 4.02e-05 GCACGAAGTT GCCGCCGC GACTGAGTCA chr3L:8518937-8519057 72 4.02e-05 ACCAGTTGTC GCCGCCGC CAAGAGAAAC chr3R:30466000-30466120 33 4.56e-05 TATATTCGAG GCGGCAGC AAAACAAAAT chr3R:31991861-31991981 10 5.69e-05 GGCGCGTAC GCTGCTGC ACTTAAAAGA chr3R:21348953-21349073 100 5.69e-05 TGTTGTTGTC GCTGCTGC TCACAGCTCC chr3R:23963070-23963190 41 6.23e-05 GCCAGGCGGA GCAGCGGC GAAGGCAGCG chr2R:8666068-8666188 46 7.36e-05 CAAAGAGAGA GCCGCGGC GAAGGAGAAA chr3R:20782798-20782918 86 7.36e-05 CACTTTTGTC GCTGCAGC TTTTTCGTGG chr2R:24685062-24685182 43 7.89e-05 TTCAGAGCTC GCTGCCGC ACGACGACGA chr2R:19467393-19467513 1 7.89e-05 . GCTGCCGC AGTCGACGTC chr2R:7758869-7758989 98 8.29e-05 GGCTCTGGCG GCGGCGGC GGAAAGCTCG chr3L:9551308-9551428 111 9.02e-05 TGTTGTTATT GGAGCTGC GC chr2L:12543247-12543367 83 9.02e-05 TCGGAGAGCG GGAGCTGC AAGAGAGCGA chr2R:24275568-24275688 52 1.06e-04 TGTTCCATCT GCAACTGC GCAGGCGCCT chrX:12654347-12654467 74 1.06e-04 TTTGTAAGGT GCAACTGC AGCtgtgtgc chr3R:26230088-26230208 25 1.06e-04 AGCAACAACA GCAACTGC AGCAACACTC chrM:7418-7538 85 1.20e-04 AACAGGTGTA GGAGCAGC TATAGCTGCA chrX:4175999-4176119 29 1.20e-04 CAGTGTACTT GCCACTGC TTATCCTGCT chr3R:9056517-9056637 108 1.36e-04 gagggagata gcaacagc aacag chr2L:19576840-19576960 22 1.36e-04 CAAAAAACAA GGCGCAGC TGTATTGTGC chr3R:20780172-20780292 96 1.59e-04 ACGATCTGCA GCCACAGC CCCCAGCAAC chr2R:8143486-8143606 34 1.59e-04 TACACCCGTG GCCACAGC CATAGCAACC chrM:12197-12317 41 1.59e-04 AATAGTCTGA GCCACAGC TCGCAAACCT chr3L:18013249-18013369 22 1.84e-04 TTGGCAAAAT GACGCTGC AAAACTTGTT chr2L:16536695-16536815 75 1.84e-04 AAGAGGGATG GGGGCTGC AAAGAAGAAG chr2R:7623085-7623205 95 2.18e-04 CGGTAAAGCT GAAGCAGC GCAACTTCGG chrX:17878777-17878897 99 2.18e-04 CTTCTGCCGG GGCGCCGC CTCTAATaca chr3L:10736973-10737093 5 2.18e-04 GGCA GCGACTGC GAGCGCCAGC chr3L:1458089-1458209 50 2.18e-04 TAACGCAATT GAAGCAGC GCAAAGAAGT chr2R:14482534-14482654 103 2.44e-04 TCCTTTTCAA GCAGGAGC ACCCTGTTCT chr2R:10437930-10438050 22 2.99e-04 GCTGCGCACC GACGCCGC CAACAGCTGT chr3R:23221962-23222082 87 2.99e-04 GGTTTTTTTC GGGGCCGC CAAGTGCGGT chr3R:4307810-4307930 112 2.99e-04 TGTGTTCTCG GCAGGCGC T chr3L:2831767-2831887 103 3.31e-04 GTTGGCAGAA GAGGCAGC TTCAGAAAAA chrX:15834717-15834837 71 3.31e-04 GAAAAGAAAA GAGGCAGC ATTATCATCA chr2L:18468679-18468799 80 3.31e-04 GTAAGGGGTT GGAGCGGC GAAGGCCAAG chr3L:7804810-7804930 102 3.31e-04 CTGATTCTCA GAGGCAGC TTTTGATTCT chr3L:9125205-9125325 17 3.55e-04 GAGAGCGGCG GCAACGGC GGATTTCTGT chrX:9078436-9078556 37 3.71e-04 GCGTGTTGAT GCCACGGC GTACGCAAGT chr3L:10742970-10743090 2 4.10e-04 C GCTGGTGC CCCCTTAATG chr3L:8912417-8912537 45 4.59e-04 CGAGCTTTCA GCTGGAGC AACCTGCTTC chr2L:18146722-18146842 9 4.94e-04 TCAAGCAA GCAGCTGA ATACTCTACG chr2L:2804709-2804829 3 5.22e-04 CT GCCGCTGA ACTTTGGACC chr3R:20634738-20634858 11 5.22e-04 GGCGTTCTAG GCTGGCGC TGGTTAATAT chr3L:20188248-20188368 71 5.22e-04 CGCGGGTGGG GCTGGCGC ATGCGCATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9251404-9251524 7.4e-06 25_[+5]_87 chr2R:14928155-14928275 7.4e-06 28_[+5]_84 chrM:5336-5456 7.4e-06 110_[+5]_2 chr3L:10332192-10332312 7.4e-06 50_[+5]_62 chrX:10927322-10927442 7.4e-06 31_[+5]_81 chr2R:10568699-10568819 1.3e-05 58_[+5]_54 chr2L:4797764-4797884 1.3e-05 105_[+5]_7 chr2R:14031568-14031688 1.3e-05 26_[+5]_86 chr3L:16800126-16800246 2e-05 81_[+5]_31 chr2R:10227987-10228107 2e-05 21_[+5]_91 chr2R:14986967-14987087 2e-05 72_[+5]_40 chr3L:21894905-21895025 2e-05 38_[+5]_74 chrX:8410545-8410665 2e-05 22_[+5]_90 chrX:2289338-2289458 3.6e-05 17_[+5]_95 chr3L:16052563-16052683 3.6e-05 58_[+5]_54 chr3R:11977169-11977289 3.6e-05 33_[+5]_79 chr2R:7745272-7745392 4e-05 37_[+5]_75 chr3R:11647000-11647120 4e-05 10_[+5]_102 chr3L:8518937-8519057 4e-05 71_[+5]_41 chr3R:30466000-30466120 4.6e-05 32_[+5]_80 chr3R:31991861-31991981 5.7e-05 9_[+5]_103 chr3R:21348953-21349073 5.7e-05 99_[+5]_13 chr3R:23963070-23963190 6.2e-05 40_[+5]_72 chr2R:8666068-8666188 7.4e-05 45_[+5]_67 chr3R:20782798-20782918 7.4e-05 85_[+5]_27 chr2R:24685062-24685182 7.9e-05 42_[+5]_70 chr2R:19467393-19467513 7.9e-05 [+5]_112 chr2R:7758869-7758989 8.3e-05 97_[+5]_15 chr3L:9551308-9551428 9e-05 110_[+5]_2 chr2L:12543247-12543367 9e-05 82_[+5]_30 chr2R:24275568-24275688 0.00011 51_[+5]_61 chrX:12654347-12654467 0.00011 73_[+5]_39 chr3R:26230088-26230208 0.00011 24_[+5]_88 chrM:7418-7538 0.00012 84_[+5]_28 chrX:4175999-4176119 0.00012 28_[+5]_84 chr3R:9056517-9056637 0.00014 107_[+5]_5 chr2L:19576840-19576960 0.00014 21_[+5]_91 chr3R:20780172-20780292 0.00016 95_[+5]_17 chr2R:8143486-8143606 0.00016 33_[+5]_79 chrM:12197-12317 0.00016 40_[+5]_72 chr3L:18013249-18013369 0.00018 21_[+5]_91 chr2L:16536695-16536815 0.00018 74_[+5]_38 chr2R:7623085-7623205 0.00022 94_[+5]_18 chrX:17878777-17878897 0.00022 98_[+5]_14 chr3L:10736973-10737093 0.00022 4_[+5]_108 chr3L:1458089-1458209 0.00022 49_[+5]_63 chr2R:14482534-14482654 0.00024 102_[+5]_10 chr2R:10437930-10438050 0.0003 21_[+5]_91 chr3R:23221962-23222082 0.0003 86_[+5]_26 chr3R:4307810-4307930 0.0003 111_[+5]_1 chr3L:2831767-2831887 0.00033 102_[+5]_10 chrX:15834717-15834837 0.00033 70_[+5]_42 chr2L:18468679-18468799 0.00033 79_[+5]_33 chr3L:7804810-7804930 0.00033 101_[+5]_11 chr3L:9125205-9125325 0.00036 16_[+5]_96 chrX:9078436-9078556 0.00037 36_[+5]_76 chr3L:10742970-10743090 0.00041 1_[+5]_111 chr3L:8912417-8912537 0.00046 44_[+5]_68 chr2L:18146722-18146842 0.00049 8_[+5]_104 chr2L:2804709-2804829 0.00052 2_[+5]_110 chr3R:20634738-20634858 0.00052 10_[+5]_102 chr3L:20188248-20188368 0.00052 70_[+5]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMGCWGC width=8 seqs=62 chrX:9251404-9251524 ( 26) GCAGCTGC 1 chr2R:14928155-14928275 ( 29) GCAGCTGC 1 chrM:5336-5456 ( 111) GCAGCTGC 1 chr3L:10332192-10332312 ( 51) GCAGCTGC 1 chrX:10927322-10927442 ( 32) GCAGCTGC 1 chr2R:10568699-10568819 ( 59) GCCGCTGC 1 chr2L:4797764-4797884 ( 106) GCCGCTGC 1 chr2R:14031568-14031688 ( 27) GCCGCTGC 1 chr3L:16800126-16800246 ( 82) GCAGCAGC 1 chr2R:10227987-10228107 ( 22) GCAGCAGC 1 chr2R:14986967-14987087 ( 73) GCAGCAGC 1 chr3L:21894905-21895025 ( 39) GCAGCAGC 1 chrX:8410545-8410665 ( 23) GCAGCAGC 1 chrX:2289338-2289458 ( 18) GCGGCTGC 1 chr3L:16052563-16052683 ( 59) GCGGCTGC 1 chr3R:11977169-11977289 ( 34) GCGGCTGC 1 chr2R:7745272-7745392 ( 38) GCCGCCGC 1 chr3R:11647000-11647120 ( 11) GCCGCCGC 1 chr3L:8518937-8519057 ( 72) GCCGCCGC 1 chr3R:30466000-30466120 ( 33) GCGGCAGC 1 chr3R:31991861-31991981 ( 10) GCTGCTGC 1 chr3R:21348953-21349073 ( 100) GCTGCTGC 1 chr3R:23963070-23963190 ( 41) GCAGCGGC 1 chr2R:8666068-8666188 ( 46) GCCGCGGC 1 chr3R:20782798-20782918 ( 86) GCTGCAGC 1 chr2R:24685062-24685182 ( 43) GCTGCCGC 1 chr2R:19467393-19467513 ( 1) GCTGCCGC 1 chr2R:7758869-7758989 ( 98) GCGGCGGC 1 chr3L:9551308-9551428 ( 111) GGAGCTGC 1 chr2L:12543247-12543367 ( 83) GGAGCTGC 1 chr2R:24275568-24275688 ( 52) GCAACTGC 1 chrX:12654347-12654467 ( 74) GCAACTGC 1 chr3R:26230088-26230208 ( 25) GCAACTGC 1 chrM:7418-7538 ( 85) GGAGCAGC 1 chrX:4175999-4176119 ( 29) GCCACTGC 1 chr3R:9056517-9056637 ( 108) GCAACAGC 1 chr2L:19576840-19576960 ( 22) GGCGCAGC 1 chr3R:20780172-20780292 ( 96) GCCACAGC 1 chr2R:8143486-8143606 ( 34) GCCACAGC 1 chrM:12197-12317 ( 41) GCCACAGC 1 chr3L:18013249-18013369 ( 22) GACGCTGC 1 chr2L:16536695-16536815 ( 75) GGGGCTGC 1 chr2R:7623085-7623205 ( 95) GAAGCAGC 1 chrX:17878777-17878897 ( 99) GGCGCCGC 1 chr3L:10736973-10737093 ( 5) GCGACTGC 1 chr3L:1458089-1458209 ( 50) GAAGCAGC 1 chr2R:14482534-14482654 ( 103) GCAGGAGC 1 chr2R:10437930-10438050 ( 22) GACGCCGC 1 chr3R:23221962-23222082 ( 87) GGGGCCGC 1 chr3R:4307810-4307930 ( 112) GCAGGCGC 1 chr3L:2831767-2831887 ( 103) GAGGCAGC 1 chrX:15834717-15834837 ( 71) GAGGCAGC 1 chr2L:18468679-18468799 ( 80) GGAGCGGC 1 chr3L:7804810-7804930 ( 102) GAGGCAGC 1 chr3L:9125205-9125325 ( 17) GCAACGGC 1 chrX:9078436-9078556 ( 37) GCCACGGC 1 chr3L:10742970-10743090 ( 2) GCTGGTGC 1 chr3L:8912417-8912537 ( 45) GCTGGAGC 1 chr2L:18146722-18146842 ( 9) GCAGCTGA 1 chr2L:2804709-2804829 ( 3) GCCGCTGA 1 chr3R:20634738-20634858 ( 11) GCTGGCGC 1 chr3L:20188248-20188368 ( 71) GCTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1293 E= 1.2e-003 -1260 -1260 225 -1260 -136 184 -71 -1260 48 38 -25 -99 -71 -1260 197 -1260 -1260 210 -112 -1260 16 -25 -112 48 -1260 -1260 225 -1260 -316 220 -1260 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.2e-003 0.000000 0.000000 1.000000 0.000000 0.112903 0.758065 0.129032 0.000000 0.403226 0.274194 0.177419 0.145161 0.177419 0.000000 0.822581 0.000000 0.000000 0.903226 0.096774 0.000000 0.322581 0.177419 0.096774 0.403226 0.000000 0.000000 1.000000 0.000000 0.032258 0.967742 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCWGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[AC]GC[TA]GC -------------------------------------------------------------------------------- Time 33.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:12809-12929 7.05e-01 120 chrM:5967-6087 9.99e-01 120 chrM:4675-4795 3.01e-01 66_[+4(5.67e-05)]_46 chrM:7083-7203 6.22e-01 120 chrM:2123-2243 8.35e-01 120 chr2R:22729326-22729446 5.97e-03 103_[+1(1.01e-05)]_9 chrX:8410545-8410665 3.41e-03 22_[+5(2.01e-05)]_21_[+1(7.00e-05)]_\ 4_[+5(4.56e-05)]_49 chrM:13266-13386 5.40e-01 120 chrM:11248-11368 7.97e-01 120 chrM:12197-12317 9.89e-02 120 chr2R:8143486-8143606 3.94e-01 120 chr3R:11614588-11614708 5.29e-02 120 chr2R:14482534-14482654 9.06e-02 120 chr3R:4307810-4307930 1.36e-01 120 chr3R:28861417-28861537 2.74e-02 40_[+2(1.38e-05)]_[+2(1.38e-05)]_\ [+2(1.38e-05)]_56 chr3L:1458089-1458209 1.09e-02 20_[+3(4.87e-05)]_92 chr3L:16042684-16042804 7.56e-02 38_[+3(4.87e-05)]_[+3(4.87e-05)]_66 chrX:10585537-10585657 4.06e-01 120 chr2R:16210423-16210543 3.57e-02 12_[+1(1.01e-05)]_61_[+1(2.39e-05)]_\ 5_[+1(7.00e-05)]_18 chr2L:2203012-2203132 2.61e-02 120 chrM:5075-5195 9.94e-01 120 chr2L:16536695-16536815 1.07e-01 120 chrM:1574-1694 9.65e-01 120 chr3R:6812465-6812585 9.03e-01 120 chr3L:2490108-2490228 6.43e-03 24_[+1(1.01e-05)]_88 chr2R:19463546-19463666 3.69e-01 120 chrX:10927322-10927442 2.23e-02 1_[+5(2.01e-05)]_22_[+5(7.37e-06)]_\ 10_[+5(4.56e-05)]_63 chr3R:5612536-5612656 5.29e-03 8_[+1(5.25e-05)]_[+1(2.39e-05)]_\ [+1(2.39e-05)]_88 chrX:263896-264016 2.12e-01 [+1(2.39e-05)]_112 chr3R:20782798-20782918 3.05e-02 85_[+5(7.36e-05)]_27 chr3R:11977169-11977289 1.89e-02 33_[+5(3.63e-05)]_79 chr3R:24218750-24218870 7.73e-04 6_[+1(5.25e-05)]_71_[+2(1.38e-05)]_\ [+2(7.69e-05)]_6_[+2(1.38e-05)]_5 chr3L:3035437-3035557 1.35e-01 120 chrX:14134097-14134217 1.78e-01 120 chr2R:7758869-7758989 2.58e-02 94_[+5(8.29e-05)]_18 chr3L:7804810-7804930 8.21e-03 51_[+3(4.87e-05)]_61 chr2R:21202899-21203019 9.44e-01 120 chrM:2715-2835 9.92e-01 120 chrX:4175999-4176119 6.31e-03 88_[+4(5.67e-05)]_24 chr2L:1568827-1568947 1.07e-01 120 chr3R:30461711-30461831 3.79e-01 120 chr2R:24813773-24813893 7.22e-02 36_[+2(4.41e-05)]_76 chr3R:10133687-10133807 3.32e-04 22_[+1(5.25e-05)]_6_[+1(1.01e-05)]_\ 28_[+3(4.87e-05)]_40 chr2R:14031568-14031688 6.41e-02 14_[+5(5.69e-05)]_4_[+5(1.28e-05)]_\ 86 chr2L:2432974-2433094 6.88e-01 120 chr3L:12490180-12490300 3.98e-03 2_[+2(7.69e-05)]_110 chr3L:7528731-7528851 5.97e-01 120 chrM:7418-7538 3.99e-02 120 chr3R:10826904-10827024 2.13e-03 34_[+1(2.39e-05)]_[+1(2.39e-05)]_\ [+1(2.39e-05)]_32_[+2(2.39e-05)]_22 chr3R:29291056-29291176 7.94e-02 120 chrM:14260-14380 8.09e-01 120 chr3R:21599701-21599821 2.86e-01 5_[+2(8.70e-05)]_107 chrM:7620-7740 5.40e-01 120 chrX:2469994-2470114 3.26e-03 8_[+4(2.39e-05)]_104 chr2R:11194127-11194247 9.99e-01 120 chr2L:12543247-12543367 5.28e-03 25_[+1(2.39e-05)]_8_[+1(5.25e-05)]_\ 25_[+1(7.00e-05)]_[+5(9.02e-05)]_1_[+1(1.01e-05)]_21 chr2R:19467393-19467513 1.41e-02 [+5(7.89e-05)]_51_[+2(2.39e-05)]_53 chr2R:24685062-24685182 1.43e-01 42_[+5(7.89e-05)]_70 chr3L:7993991-7994111 6.53e-02 120 chr3L:10332192-10332312 4.30e-05 50_[+5(7.37e-06)]_20_[+4(5.67e-05)]_\ 34 chr3L:18013249-18013369 1.64e-01 120 chrX:2545451-2545571 5.49e-02 120 chr2L:14248060-14248180 9.55e-01 120 chr3L:10709332-10709452 6.58e-01 120 chr2L:20083543-20083663 2.11e-02 80_[+4(5.67e-05)]_32 chr2L:20821586-20821706 1.93e-01 120 chr3L:3400833-3400953 6.74e-03 120 chr3L:8518937-8519057 8.73e-04 9_[+3(8.42e-05)]_54_[+5(4.02e-05)]_\ 41 chrM:3495-3615 6.60e-01 120 chr3R:9350673-9350793 6.40e-01 120 chr3R:10109300-10109420 3.70e-04 7_[+2(8.70e-05)]_26_[+4(1.38e-05)]_\ 25_[+2(2.39e-05)]_6_[+2(1.38e-05)]_24 chr3L:17612090-17612210 1.62e-04 1_[+3(8.42e-05)]_83_[+2(7.69e-05)]_\ 6_[+2(4.41e-05)]_6 chr2R:10474723-10474843 9.62e-01 120 chr3L:16153992-16154112 6.33e-01 120 chr2L:4797764-4797884 1.72e-01 105_[+5(1.28e-05)]_7 chr3L:10736973-10737093 1.44e-04 80_[+4(1.38e-05)]_[+4(8.06e-05)]_24 chr3L:12058564-12058684 8.25e-01 120 chr2L:9176825-9176945 2.25e-01 43_[+2(7.69e-05)]_20_[+2(4.41e-05)]_\ 41 chr3R:24595614-24595734 5.19e-02 88_[+3(4.87e-05)]_24 chr3L:21918749-21918869 9.97e-01 120 chr2R:17462187-17462307 1.16e-02 1_[+4(1.38e-05)]_34_[+4(1.38e-05)]_\ 69 chr3R:31680039-31680159 1.28e-01 25_[+3(4.87e-05)]_87 chr2L:19576840-19576960 6.95e-04 70_[+3(4.87e-05)]_9_[+4(8.06e-05)]_\ 25 chrM:10684-10804 9.97e-01 120 chr3L:9468020-9468140 3.41e-03 58_[+3(4.87e-05)]_17_[+3(8.42e-05)]_\ 29 chr3R:29758437-29758557 2.44e-01 120 chr2R:10603846-10603966 8.28e-01 120 chr2R:10238495-10238615 1.27e-01 120 chr3L:7528947-7529067 2.71e-01 120 chrM:5336-5456 6.45e-02 110_[+5(7.37e-06)]_2 chrX:11558575-11558695 8.72e-03 120 chrX:17495470-17495590 4.36e-02 103_[+4(2.39e-05)]_9 chr3R:6405513-6405633 3.97e-04 26_[+2(7.69e-05)]_29_[+4(1.38e-05)]_\ [+4(2.39e-05)]_41 chr3L:21224810-21224930 5.50e-03 90_[+4(1.38e-05)]_4_[+4(2.39e-05)]_\ 10 chr3L:10928869-10928989 6.13e-01 120 chr2L:18468679-18468799 4.09e-01 120 chr2R:20831777-20831897 8.14e-02 120 chr2L:21142308-21142428 6.38e-01 120 chr3L:13263889-13264009 5.79e-02 64_[+3(4.87e-05)]_48 chr2R:6632404-6632524 3.81e-02 70_[+1(2.39e-05)]_42 chr3L:21894905-21895025 5.35e-02 38_[+5(2.01e-05)]_1_[+5(2.01e-05)]_\ 65 chr3R:14007726-14007846 3.38e-01 120 chr3R:15293642-15293762 2.70e-01 120 chr3L:16218100-16218220 9.94e-01 120 chr3R:10889364-10889484 5.52e-02 120 chr3L:16037836-16037956 5.90e-01 120 chr3R:14292494-14292614 3.74e-01 120 chr3R:9158052-9158172 1.87e-02 87_[+2(7.69e-05)]_25 chr3L:9125205-9125325 2.37e-02 5_[+1(7.00e-05)]_107 chr2R:14986967-14987087 2.11e-03 [+3(4.87e-05)]_64_[+5(2.01e-05)]_40 chr3R:23221962-23222082 3.30e-01 120 chrX:17878777-17878897 6.37e-03 34_[+1(1.01e-05)]_78 chr2R:10568699-10568819 2.07e-03 43_[+1(2.39e-05)]_7_[+5(1.28e-05)]_\ 1_[+5(4.02e-05)]_45 chr3R:29682194-29682314 1.49e-01 56_[+1(7.00e-05)]_8_[+1(7.00e-05)]_\ 40 chr3R:11937589-11937709 2.85e-02 18_[+1(2.39e-05)]_94 chr3R:21348953-21349073 7.49e-02 73_[+5(8.29e-05)]_18_[+5(5.69e-05)]_\ 13 chr2R:7623085-7623205 2.50e-03 24_[+1(1.01e-05)]_88 chr3R:22781599-22781719 1.75e-02 1_[+4(1.38e-05)]_2_[+4(1.38e-05)]_\ 101 chrX:15834717-15834837 5.17e-03 20_[+1(2.39e-05)]_19_[+1(2.39e-05)]_\ 65 chr3L:15258548-15258668 7.72e-01 120 chr2L:12513923-12514043 8.81e-01 120 chr3R:11153978-11154098 9.94e-01 120 chr3R:8969004-8969124 3.33e-01 120 chrM:1782-1902 1.68e-01 120 chr3R:22140254-22140374 1.64e-01 120 chr3R:26230088-26230208 1.15e-02 120 chr3L:10365042-10365162 1.07e-01 36_[+3(4.87e-05)]_9_[+3(4.87e-05)]_\ 59 chr3L:9551308-9551428 1.59e-02 110_[+5(9.02e-05)]_2 chr2R:21646782-21646902 3.84e-01 78_[+2(7.69e-05)]_34 chr2L:7611711-7611831 7.24e-01 120 chr3R:29088207-29088327 2.65e-01 120 chr2R:23659165-23659285 7.81e-02 28_[+2(8.70e-05)]_84 chr3R:30387099-30387219 2.10e-02 3_[+1(5.25e-05)]_109 chrX:12007038-12007158 1.28e-03 64_[+4(5.67e-05)]_48 chr3L:17973120-17973240 6.18e-05 96_[+2(1.38e-05)]_16 chrM:8663-8783 1.02e-01 120 chr3L:388324-388444 7.24e-01 120 chr2R:10772016-10772136 5.39e-01 120 chr2R:24955710-24955830 2.15e-01 106_[+3(4.87e-05)]_6 chr3L:20188248-20188368 6.20e-01 120 chr2R:14140752-14140872 3.00e-01 106_[+4(5.67e-05)]_6 chr2L:11155831-11155951 9.03e-02 120 chr3R:31991861-31991981 3.71e-02 9_[+5(5.69e-05)]_103 chr3L:2831767-2831887 3.32e-02 120 chr2R:12535166-12535286 8.03e-01 120 chr3R:16526796-16526916 1.48e-01 46_[+3(4.87e-05)]_66 chr2L:6472323-6472443 1.81e-02 120 chr3L:6457999-6458119 6.42e-01 120 chr3R:7491597-7491717 4.05e-02 78_[+2(1.38e-05)]_34 chr3R:24031370-24031490 1.01e-03 33_[+2(1.38e-05)]_1_[+2(1.38e-05)]_\ 55_[+4(1.38e-05)]_7 chr2R:10227987-10228107 3.02e-04 1_[+5(4.56e-05)]_12_[+5(2.01e-05)]_\ 11_[+5(4.56e-05)]_23_[+1(5.25e-05)]_10_[+1(1.01e-05)]_2_[+1(2.39e-05)]_13 chrM:10893-11013 9.23e-01 120 chr3L:11707926-11708046 1.43e-04 34_[+3(8.42e-05)]_33_[+1(1.01e-05)]_\ 4_[+1(2.39e-05)]_25 chr3R:20634738-20634858 6.48e-02 120 chr3R:11647000-11647120 1.43e-05 10_[+5(4.02e-05)]_47_[+3(4.87e-05)]_\ 36_[+1(1.01e-05)]_3 chr2R:17717317-17717437 1.03e-01 1_[+2(4.41e-05)]_38_[+2(1.38e-05)]_\ 65 chr3R:30466000-30466120 3.50e-04 32_[+5(4.56e-05)]_1_[+3(8.42e-05)]_\ 71 chr2L:18341105-18341225 2.56e-01 120 chr3R:8029623-8029743 1.90e-01 120 chr2L:4348682-4348802 5.30e-01 120 chr2R:13461323-13461443 7.13e-01 120 chrX:12890439-12890559 1.44e-01 80_[+2(1.38e-05)]_32 chrX:21592169-21592289 9.62e-01 120 chr2R:21713290-21713410 9.11e-02 14_[+2(7.69e-05)]_98 chr3R:21875183-21875303 2.80e-01 44_[+2(4.41e-05)]_14_[+2(7.69e-05)]_\ 46 chrX:15852972-15853092 9.90e-01 120 chr2L:13165762-13165882 3.54e-02 69_[+1(5.25e-05)]_16_[+1(5.25e-05)]_\ 19 chr2L:9705923-9706043 1.04e-01 78_[+2(4.41e-05)]_34 chrX:12654347-12654467 1.79e-01 120 chr2R:19616306-19616426 5.16e-02 66_[+3(4.87e-05)]_7_[+3(4.87e-05)]_\ 31 chr3L:833334-833454 1.87e-01 120 chr3R:4471466-4471586 6.51e-02 120 chr3L:10742970-10743090 6.36e-02 120 chr3R:20780172-20780292 1.23e-01 120 chrX:9078436-9078556 7.56e-02 120 chrX:3841132-3841252 1.57e-04 2_[+4(2.39e-05)]_4_[+4(1.38e-05)]_\ 55_[+2(7.69e-05)]_6_[+4(8.06e-05)]_21 chr2L:7985179-7985299 1.41e-01 120 chr2R:7745272-7745392 2.97e-06 37_[+5(4.02e-05)]_8_[+3(4.87e-05)]_\ 35_[+1(1.01e-05)]_4_[+2(8.70e-05)]_4 chr2R:11033654-11033774 1.97e-01 12_[+3(4.87e-05)]_100 chr3R:9417801-9417921 1.13e-02 49_[+2(4.41e-05)]_32_[+3(8.42e-05)]_\ 23 chr3R:18787339-18787459 4.17e-01 120 chr2L:2804709-2804829 2.33e-01 120 chr3L:17961926-17962046 9.39e-01 120 chr3L:10675859-10675979 5.83e-03 55_[+1(5.25e-05)]_57 chr2R:15134274-15134394 8.10e-01 120 chr3R:24047298-24047418 3.96e-04 26_[+4(1.38e-05)]_22_[+4(1.38e-05)]_\ 6_[+1(2.39e-05)]_42 chr2L:21899475-21899595 4.96e-08 1_[+2(1.38e-05)]_[+2(7.69e-05)]_\ [+2(1.38e-05)]_29_[+1(1.01e-05)]_12_[+3(8.42e-05)]_27_[+4(1.38e-05)]_3 chr3R:23963070-23963190 1.50e-02 23_[+1(5.25e-05)]_9_[+5(6.23e-05)]_\ 72 chr3L:11298426-11298546 2.15e-01 83_[+3(4.87e-05)]_29 chr2R:21546449-21546569 2.53e-01 120 chr2L:16406671-16406791 7.77e-01 120 chrX:3672193-3672313 3.41e-03 88_[+1(1.01e-05)]_14_[+1(1.01e-05)]_\ 2 chr3R:31724947-31725067 2.55e-01 120 chrX:14897827-14897947 1.00e+00 120 chr2R:14928155-14928275 8.49e-04 28_[+5(7.37e-06)]_24_[+4(2.39e-05)]_\ 52 chr3L:14622482-14622602 5.49e-02 108_[+3(8.42e-05)]_4 chr3L:21008928-21009048 2.03e-03 54_[+2(1.38e-05)]_21_[+1(2.39e-05)]_\ 29 chr2L:18146722-18146842 3.09e-01 120 chr3R:11566969-11567089 7.68e-01 120 chr3L:15209041-15209161 3.20e-01 120 chr2L:10842447-10842567 1.45e-01 120 chr2L:20802330-20802450 6.21e-01 120 chr3L:8912417-8912537 1.19e-02 120 chr2R:18799551-18799671 1.84e-03 25_[+1(2.39e-05)]_87 chr2R:19849239-19849359 9.99e-01 120 chr2L:20912997-20913117 3.46e-02 16_[+3(4.87e-05)]_96 chr3L:7264159-7264279 9.83e-04 65_[+3(4.87e-05)]_47 chr3L:9614859-9614979 5.63e-01 120 chr3R:8858059-8858179 8.45e-01 120 chr2R:10477911-10478031 3.56e-04 3_[+2(7.69e-05)]_6_[+2(2.39e-05)]_\ 45_[+1(1.01e-05)]_42 chr2R:20996726-20996846 6.74e-04 30_[+3(4.87e-05)]_1_[+4(6.68e-05)]_\ 73 chr2R:9692013-9692133 1.26e-03 75_[+4(1.38e-05)]_37 chrX:14953156-14953276 4.79e-02 120 chr2R:24275568-24275688 3.50e-01 120 chr2R:8666068-8666188 6.36e-04 26_[+1(2.39e-05)]_4_[+1(2.39e-05)]_\ 74 chr2R:17604648-17604768 9.14e-01 120 chr3R:6397765-6397885 3.09e-01 120 chrX:6059296-6059416 4.95e-01 120 chr2L:3580771-3580891 2.00e-03 54_[+2(4.41e-05)]_20_[+1(5.25e-05)]_\ 30 chr3R:23486862-23486982 9.90e-01 120 chr3R:9056517-9056637 6.04e-03 120 chr3L:17608676-17608796 1.00e+00 120 chr2R:14494808-14494928 8.03e-01 120 chrX:2042235-2042355 2.49e-02 120 chr3L:17563600-17563720 1.22e-04 45_[+3(8.42e-05)]_13_[+2(7.69e-05)]_\ 4_[+2(7.69e-05)]_34 chr3R:5086871-5086991 9.92e-01 120 chr2R:24543467-24543587 1.16e-02 120 chr2L:10276634-10276754 2.68e-02 54_[+1(7.00e-05)]_44_[+4(5.67e-05)]_\ 6 chr2R:15676008-15676128 7.34e-06 3_[+2(1.38e-05)]_12_[+1(1.01e-05)]_\ 89 chr2R:23666872-23666992 2.46e-04 23_[+2(4.41e-05)]_6_[+2(1.38e-05)]_\ [+2(1.38e-05)]_2_[+2(1.38e-05)]_2_[+2(2.39e-05)]_28_[+1(1.01e-05)]_11 chr2R:24896070-24896190 2.67e-01 120 chr2R:10437930-10438050 1.40e-04 47_[+2(2.39e-05)]_8_[+1(5.25e-05)]_\ 9_[+1(2.39e-05)]_32 chr3R:21345213-21345333 5.41e-01 120 chr3L:16800126-16800246 3.52e-03 81_[+5(2.01e-05)]_31 chr3L:14755380-14755500 3.20e-02 37_[+1(5.25e-05)]_75 chr2L:18372199-18372319 6.47e-01 120 chr2L:868341-868461 1.35e-03 85_[+1(2.39e-05)]_18_[+2(1.38e-05)]_\ 1 chr2L:8083561-8083681 6.39e-01 120 chr2R:10558196-10558316 3.34e-03 19_[+1(5.25e-05)]_56_[+3(4.87e-05)]_\ 29 chr3L:16052563-16052683 7.48e-05 2_[+1(2.39e-05)]_2_[+1(1.01e-05)]_\ 27_[+3(4.87e-05)]_3_[+5(3.63e-05)]_54 chr2L:8361716-8361836 3.40e-01 120 chr3R:19165814-19165934 9.70e-02 27_[+2(2.39e-05)]_3_[+2(7.69e-05)]_\ 74 chrX:2289338-2289458 3.65e-03 17_[+5(3.63e-05)]_95 chr3L:16195554-16195674 1.01e-02 58_[+3(4.87e-05)]_2_[+3(8.42e-05)]_\ 44 chrX:15811771-15811891 1.84e-02 83_[+2(1.38e-05)]_29 chrX:9251404-9251524 8.43e-04 25_[+5(7.37e-06)]_87 chr2L:5305583-5305703 3.20e-01 120 chrX:16968144-16968264 6.05e-03 62_[+3(4.87e-05)]_50 chr3R:21972243-21972363 1.31e-01 60_[+3(4.87e-05)]_52 chr3L:16915936-16916056 8.25e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************