******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd64A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:2897885-2898005 1.0000 120 chr3L:21465418-21465538 1.0000 120 chr3R:20648216-20648336 1.0000 120 chr3R:15477796-15477916 1.0000 120 chr3R:14396718-14396838 1.0000 120 chr3R:22053367-22053487 1.0000 120 chr2L:14211177-14211297 1.0000 120 chr2R:9214309-9214429 1.0000 120 chr3L:19239147-19239267 1.0000 120 chr2R:20231597-20231717 1.0000 120 chr3R:21871725-21871845 1.0000 120 chr3R:23867239-23867359 1.0000 120 chr3L:15071398-15071518 1.0000 120 chr2R:13532024-13532144 1.0000 120 chr3L:1420067-1420187 1.0000 120 chr3L:4014260-4014380 1.0000 120 chr2R:13033031-13033151 1.0000 120 chr3R:15664623-15664743 1.0000 120 chr3L:8850066-8850186 1.0000 120 chr2R:23178995-23179115 1.0000 120 chr2L:8361312-8361432 1.0000 120 chr2R:12441363-12441483 1.0000 120 chrX:9644947-9645067 1.0000 120 chr2L:17255032-17255152 1.0000 120 chr3L:13676970-13677090 1.0000 120 chr3L:2591140-2591260 1.0000 120 chr3R:11660110-11660230 1.0000 120 chr2R:15780254-15780374 1.0000 120 chr2L:7436029-7436149 1.0000 120 chr2L:7165984-7166104 1.0000 120 chr2R:6681374-6681494 1.0000 120 chr3L:16767863-16767983 1.0000 120 chr3R:20586249-20586369 1.0000 120 chr2L:308304-308424 1.0000 120 chr2R:18667158-18667278 1.0000 120 chr3R:8741293-8741413 1.0000 120 chr3R:27067464-27067584 1.0000 120 chr2L:2989095-2989215 1.0000 120 chr2R:18877820-18877940 1.0000 120 chr2L:14448988-14449108 1.0000 120 chr3R:14415926-14416046 1.0000 120 chr2L:8285354-8285474 1.0000 120 chr3R:12701376-12701496 1.0000 120 chr2L:1399548-1399668 1.0000 120 chr3R:26222386-26222506 1.0000 120 chr2R:7158983-7159103 1.0000 120 chr2R:10287610-10287730 1.0000 120 chr3R:9725028-9725148 1.0000 120 chr2L:12195003-12195123 1.0000 120 chr2R:15530003-15530123 1.0000 120 chr2L:12457342-12457462 1.0000 120 chr2R:21874166-21874286 1.0000 120 chrX:16596447-16596567 1.0000 120 chr2R:11062381-11062501 1.0000 120 chr3R:22635014-22635134 1.0000 120 chr3R:10030175-10030295 1.0000 120 chr3L:11637060-11637180 1.0000 120 chr2L:18335793-18335913 1.0000 120 chr2L:12474464-12474584 1.0000 120 chr2L:14310950-14311070 1.0000 120 chr2L:2446073-2446193 1.0000 120 chr2L:10498219-10498339 1.0000 120 chr2R:21888942-21889062 1.0000 120 chr2R:7451131-7451251 1.0000 120 chr3R:16206323-16206443 1.0000 120 chr2R:11206315-11206435 1.0000 120 chr3L:20507725-20507845 1.0000 120 chr3R:4973996-4974116 1.0000 120 chr3L:20276011-20276131 1.0000 120 chr2L:13349412-13349532 1.0000 120 chr3R:14463568-14463688 1.0000 120 chr2R:18148501-18148621 1.0000 120 chr2R:20063351-20063471 1.0000 120 chr3R:31758891-31759011 1.0000 120 chr3L:20976471-20976591 1.0000 120 chr3L:2004977-2005097 1.0000 120 chr3L:6519794-6519914 1.0000 120 chr3L:8379292-8379412 1.0000 120 chr3L:17656882-17657002 1.0000 120 chr2R:24323393-24323513 1.0000 120 chr3R:22066695-22066815 1.0000 120 chr2R:7881720-7881840 1.0000 120 chr3R:9530035-9530155 1.0000 120 chr3R:22067412-22067532 1.0000 120 chrX:19375563-19375683 1.0000 120 chr3L:16010375-16010495 1.0000 120 chrX:9447684-9447804 1.0000 120 chr2L:1913169-1913289 1.0000 120 chr3R:4974659-4974779 1.0000 120 chr2R:9266584-9266704 1.0000 120 chrX:2332472-2332592 1.0000 120 chr3R:31070904-31071024 1.0000 120 chr2R:7694323-7694443 1.0000 120 chr2L:7491482-7491602 1.0000 120 chr3L:11317569-11317689 1.0000 120 chr3L:16699636-16699756 1.0000 120 chr2R:23663213-23663333 1.0000 120 chr2L:18980847-18980967 1.0000 120 chr3L:15175436-15175556 1.0000 120 chr2R:6811744-6811864 1.0000 120 chr3R:9028861-9028981 1.0000 120 chr3L:17489168-17489288 1.0000 120 chr3L:3933985-3934105 1.0000 120 chr3R:19120740-19120860 1.0000 120 chr3R:28545844-28545964 1.0000 120 chr2R:8998021-8998141 1.0000 120 chrX:15490683-15490803 1.0000 120 chr3L:11512901-11513021 1.0000 120 chr2L:7998087-7998207 1.0000 120 chr3L:13397960-13398080 1.0000 120 chr2L:18648078-18648198 1.0000 120 chr3L:8770925-8771045 1.0000 120 chr3R:21158727-21158847 1.0000 120 chr3L:5947164-5947284 1.0000 120 chr3L:3858629-3858749 1.0000 120 chr3R:23971391-23971511 1.0000 120 chr3R:8155908-8156028 1.0000 120 chr2L:16637352-16637472 1.0000 120 chr2L:19319677-19319797 1.0000 120 chr2R:15250797-15250917 1.0000 120 chr2L:10615202-10615322 1.0000 120 chr3R:12649749-12649869 1.0000 120 chr2R:9269590-9269710 1.0000 120 chr2L:7789055-7789175 1.0000 120 chr2L:14307657-14307777 1.0000 120 chr3R:25524346-25524466 1.0000 120 chr3L:3122948-3123068 1.0000 120 chr2L:18981629-18981749 1.0000 120 chr3R:5229550-5229670 1.0000 120 chr2L:16540976-16541096 1.0000 120 chr2R:10734474-10734594 1.0000 120 chrX:8887633-8887753 1.0000 120 chrX:13281416-13281536 1.0000 120 chr2L:19937919-19938039 1.0000 120 chr3L:624771-624891 1.0000 120 chr2R:15807047-15807167 1.0000 120 chr3R:28552374-28552494 1.0000 120 chr2L:12498693-12498813 1.0000 120 chr2R:14031238-14031358 1.0000 120 chr2L:1735278-1735398 1.0000 120 chr3L:623265-623385 1.0000 120 chr3L:16702917-16703037 1.0000 120 chr2R:16820352-16820472 1.0000 120 chrX:8857168-8857288 1.0000 120 chr2R:10212488-10212608 1.0000 120 chrX:13088681-13088801 1.0000 120 chr3R:19822258-19822378 1.0000 120 chr2L:19362478-19362598 1.0000 120 chr3L:9372719-9372839 1.0000 120 chr2L:1400308-1400428 1.0000 120 chr3L:4840103-4840223 1.0000 120 chr3L:11290227-11290347 1.0000 120 chrX:17509676-17509796 1.0000 120 chr2L:19336842-19336962 1.0000 120 chrX:2050748-2050868 1.0000 120 chr2R:22384232-22384352 1.0000 120 chr3R:17400157-17400277 1.0000 120 chr2R:14073608-14073728 1.0000 120 chr3R:18999988-19000108 1.0000 120 chr3L:7858417-7858537 1.0000 120 chrX:6733814-6733934 1.0000 120 chr3R:19467584-19467704 1.0000 120 chr2R:8770987-8771107 1.0000 120 chr3R:20561021-20561141 1.0000 120 chr3L:1167534-1167654 1.0000 120 chr2R:12344114-12344234 1.0000 120 chr3L:4311453-4311573 1.0000 120 chrX:17743704-17743824 1.0000 120 chr2R:7049810-7049930 1.0000 120 chr2L:12049338-12049458 1.0000 120 chr3L:137060-137180 1.0000 120 chr2L:9497366-9497486 1.0000 120 chrX:1992008-1992128 1.0000 120 chr2R:18801154-18801274 1.0000 120 chr2R:23611939-23612059 1.0000 120 chr2L:7571917-7572037 1.0000 120 chr3R:16081399-16081519 1.0000 120 chr2L:19998310-19998430 1.0000 120 chrX:7227451-7227571 1.0000 120 chr3R:23220646-23220766 1.0000 120 chr3L:4550453-4550573 1.0000 120 chr2L:14234826-14234946 1.0000 120 chrX:6720089-6720209 1.0000 120 chr2R:23378292-23378412 1.0000 120 chr3L:10741295-10741415 1.0000 120 chr3L:16429620-16429740 1.0000 120 chr2L:5338748-5338868 1.0000 120 chr2R:16095522-16095642 1.0000 120 chr2R:5664468-5664588 1.0000 120 chr2L:20016570-20016690 1.0000 120 chr3R:26908854-26908974 1.0000 120 chr3R:29123636-29123756 1.0000 120 chrX:772748-772868 1.0000 120 chr3L:5785349-5785469 1.0000 120 chr2R:21611402-21611522 1.0000 120 chr3R:14748782-14748902 1.0000 120 chr2L:470052-470172 1.0000 120 chr3L:5992392-5992512 1.0000 120 chr3R:24008297-24008417 1.0000 120 chr3R:24301583-24301703 1.0000 120 chr2R:9542594-9542714 1.0000 120 chr2R:17076129-17076249 1.0000 120 chr3R:9573431-9573551 1.0000 120 chr3L:8456578-8456698 1.0000 120 chr3R:23817969-23818089 1.0000 120 chr3R:22684168-22684288 1.0000 120 chr3L:7858619-7858739 1.0000 120 chr3L:4384316-4384436 1.0000 120 chrX:17481997-17482117 1.0000 120 chr3R:23134820-23134940 1.0000 120 chr3L:14194314-14194434 1.0000 120 chr2L:7215805-7215925 1.0000 120 chr2L:8229317-8229437 1.0000 120 chr3L:7962522-7962642 1.0000 120 chr2L:3149181-3149301 1.0000 120 chr2R:7655351-7655471 1.0000 120 chr3R:27986971-27987091 1.0000 120 chr3R:9889107-9889227 1.0000 120 chr3L:20494059-20494179 1.0000 120 chr3R:29138465-29138585 1.0000 120 chr2R:15304872-15304992 1.0000 120 chrX:768702-768822 1.0000 120 chr3L:17033447-17033567 1.0000 120 chr3R:6765012-6765132 1.0000 120 chr3R:11762560-11762680 1.0000 120 chr3R:9215671-9215791 1.0000 120 chr3R:31603862-31603982 1.0000 120 chr3R:14744460-14744580 1.0000 120 chr3R:12250357-12250477 1.0000 120 chr2L:16847076-16847196 1.0000 120 chr3R:15676823-15676943 1.0000 120 chr3L:12804107-12804227 1.0000 120 chr2L:6291797-6291917 1.0000 120 chr3L:11531399-11531519 1.0000 120 chr3R:19182992-19183112 1.0000 120 chr3R:10599153-10599273 1.0000 120 chr3L:16056357-16056477 1.0000 120 chr3R:14284456-14284576 1.0000 120 chr3R:5107051-5107171 1.0000 120 chr3R:27148891-27149011 1.0000 120 chr2L:9193899-9194019 1.0000 120 chr3L:2493875-2493995 1.0000 120 chr3R:20263005-20263125 1.0000 120 chr2R:18436202-18436322 1.0000 120 chrX:3967731-3967851 1.0000 120 chr2R:22614350-22614470 1.0000 120 chr3R:11437759-11437879 1.0000 120 chr3R:9419043-9419163 1.0000 120 chr2L:18496939-18497059 1.0000 120 chr2R:14005868-14005988 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fd64A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd64A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.21 G 0.218 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.21 G 0.218 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TRTTTRYT MEME-1 width = 8 sites = 147 llr = 1017 E-value = 1.9e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:::4:2 pos.-specific C ::::::41 probability G :7:2:6:2 matrix T a:a8a:65 bits 2.3 2.0 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.1 ******* (10.0 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TGTTTGTT consensus A G AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11437759-11437879 20 2.44e-05 gtttttcgtt tgtttgtt tgtttattat chr3R:15676823-15676943 61 2.44e-05 TACATGCATT TGTTTGTT TGGCCCCAAA chr3R:23817969-23818089 44 2.44e-05 ACTTGTTTCA TGTTTGTT TGTAAACAAA chr3R:26908854-26908974 105 2.44e-05 AGTCAAACAC TGTTTGTT GACGTTAC chr3L:16429620-16429740 14 2.44e-05 TGTTTCTTTT TGTTTGTT CCATAACAAC chr2L:9497366-9497486 61 2.44e-05 AACTTTTAAC TGTTTGTT GATGCGTTGT chr2R:7049810-7049930 74 2.44e-05 GAAATATATT TGTTTGTT ATTCGAGTCC chr3L:4311453-4311573 5 2.44e-05 TGGC TGTTTGTT TGCTTCGATC chrX:2050748-2050868 80 2.44e-05 GCACTCTCAT TGTTTGTT GTTTGCTGCG chrX:17509676-17509796 61 2.44e-05 ACGGGGCGTA TGTTTGTT GTGTGCGCAG chr3R:23971391-23971511 60 2.44e-05 ACGCAGCAAG TGTTTGTT TGTGTACGCC chr3L:15175436-15175556 69 2.44e-05 gttgtcgcat tgtttgtt gttgctgctg chr2R:24323393-24323513 68 2.44e-05 tgttcctgtt tgtttgtt tgttTGCTCA chr3L:20507725-20507845 94 2.44e-05 TCTGGCCTTT TGTTTGTT GTGCCCGTCA chr2L:2446073-2446193 47 2.44e-05 GGCCGTGCAA TGTTTGTT TTATGCACGA chr2R:11062381-11062501 45 2.44e-05 tgttatttgt tgtttgtt tttgtgtCGA chr2L:2989095-2989215 43 2.44e-05 ACCACATTAT TGTTTGTT GTTTCACATG chr2R:15780254-15780374 68 2.44e-05 TGACGATAGA TGTTTGTT TTGGTGCGTA chr3L:1420067-1420187 20 2.44e-05 CGTTTTAATT TGTTTGTT TACATTTTCG chr2R:9214309-9214429 111 2.44e-05 TTCAATATTT TGTTTGTT CT chr3L:16056357-16056477 48 4.25e-05 TCAACATCAA TGTTTGCT TGATAAATAA chr2R:15304872-15304992 8 4.25e-05 TGAGTTT TGTTTGCT TGTCTTTTAT chr2R:16820352-16820472 99 4.25e-05 GACAAATATT TGTTTGCT TTTTGTTGGC chr2L:16540976-16541096 3 4.25e-05 TT TGTTTGCT CGAAACTTCC chr3L:137060-137180 22 7.48e-05 TTCCACCTTG TGTTTATT TGTGCTAAGC chr3R:19467584-19467704 40 7.48e-05 GTTTGTGCCA TGTTTATT TTTAGTTGCG chr2L:19336842-19336962 34 7.48e-05 CCATTGTTGA TGTTTATT TAAGTTGTCA chr2L:19362478-19362598 74 7.48e-05 ATTACTCAAC TGTTTATT TTAGAGGGAG chr2R:9269590-9269710 12 7.48e-05 CGATTGAATA TGTTTATT TTCAATTCCT chr3R:9028861-9028981 93 7.48e-05 CAAATTTACA TGTTTATT TTTACAAGCC chr3R:4973996-4974116 86 7.48e-05 GTGACTTTGT TGTTTATT TTTCCTCGCA chr2L:12195003-12195123 113 7.48e-05 TGTTGATGCT TGTTTATT chr2L:8285354-8285474 19 7.48e-05 AATTGCTGCT TGTTTATT TGAGGTCTTT chr3L:2591140-2591260 81 7.48e-05 TGCGGCATTA TGTTTATT GTTTATAATT chr2L:17255032-17255152 97 7.48e-05 CGCCTTAATT TGTTTATT TTGTGCTAAA chr2R:20231597-20231717 73 7.48e-05 ACAGTTCTAG TGTTTATT TATAATTTAC chr3R:22684168-22684288 67 9.36e-05 TTCTTTCCAA TGTTTGTG TTGCCAATGT chr3R:24008297-24008417 76 9.36e-05 tgtgtgcgtc tgtttgtg tgggtgCGGA chr2L:1735278-1735398 25 9.36e-05 TTATTTAGAA TGTTTGTG AATTAGCGGC chrX:15490683-15490803 44 9.36e-05 TGGCGCGACA TGTTTGTG AAATTGAACG chrX:2332472-2332592 3 9.36e-05 AT TGTTTGTG TCTGGGCTGG chr2R:21874166-21874286 45 9.36e-05 GCTTGTGCAA TGTTTGTG TAAGTGTGTC chrX:3967731-3967851 3 1.50e-04 AA TGTTTACT AAAATACCTA chrX:17481997-17482117 47 1.50e-04 ATAACCCTGG TGTTTACT CAACGCGGTC chr3R:16081399-16081519 11 1.50e-04 CTCGGCTACT TATTTGTT ATTCCATTTT chr2L:16637352-16637472 101 1.50e-04 TTCGTTTCAA TGTTTACT CCGCTTTCGT chr2R:6811744-6811864 107 1.50e-04 cTGGTTTTAA TGTTTACT CCAAAT chr3L:16010375-16010495 48 1.50e-04 AATAGGGTTC TATTTGTT CAGCGATTGC chr3R:22067412-22067532 9 1.50e-04 GCCACTCG TATTTGTT TGGCATTTCT chr2R:13532024-13532144 62 1.50e-04 TTTACATCTA TATTTGTT AATACTTTTA chr2L:18496939-18497059 18 2.25e-04 CATTTGTTTA TGTGTGTT TTAAGCTGCT chr3L:14194314-14194434 82 2.25e-04 TGGTGCAATG TGTGTGTT TTGCTTTTCA chr3R:18999988-19000108 11 2.25e-04 GCAATCTCGA TGTTTGTC CCAGCAATTA chr2R:22384232-22384352 24 2.25e-04 TGTGCGCCTG TGTGTGTT AACTTTGAGC chr2L:14307657-14307777 79 2.25e-04 ATGCTATTTT TGTTTGTC TTTACTAATT chr3L:8379292-8379412 75 2.25e-04 GAGTACAGAA TGTTTGTC GGGCAAACAA chr2L:12457342-12457462 60 2.25e-04 gtggtctgta tgtgtgtT AAACAAATAT chr3R:14415926-14416046 53 2.25e-04 CTGCCGCCTG TGTGTGTT GACAACATTG chr2R:18877820-18877940 97 2.25e-04 tgtgtgtgtg tgtgtgtT GGCCAAGTCA chr2R:12441363-12441483 40 2.25e-04 GCGCGTGTTT TGTTTGTA AACACCGATC chr3R:14396718-14396838 61 2.25e-04 GTAAGTTTTG TGTGTGTT TAGTTTCTAA chr3R:15477796-15477916 43 2.25e-04 CCAAGAAGGC TGTTTGTA TTACACCGAA chr3R:20263005-20263125 11 2.49e-04 TAGATAAATG TATTTGCT AGATCCCCCC chr3L:7858619-7858739 106 2.49e-04 CTAAAAGATC TATTTGCT TCGCCAA chr3L:5947164-5947284 40 2.49e-04 CGTCGGTTGT TATTTGCT TTATGGCTGT chr3L:17656882-17657002 38 2.49e-04 TATTAATTCT TATTTGCT GTCCTTGTTG chr2R:20063351-20063471 39 2.49e-04 GAGGTGTTGA TATTTGCT TATTAAACAC chr2L:7165984-7166104 105 2.49e-04 AAAAGAAAAA TATTTGCT TGAAAATT chr3R:22053367-22053487 33 2.74e-04 ATCATCTTCT TGTTTATG CTCCACACAC chr3R:5107051-5107171 11 3.63e-04 tgtatatctg tGTTTGCC GGCTGAAAAC chr3R:31603862-31603982 43 3.63e-04 ATCACCATAT TGTGTGCT AGTTTAGTAC chr2L:7215805-7215925 97 3.63e-04 TAGAAATGAC TGTTTGCA TGTGCCGAGC chr3R:23220646-23220766 15 3.63e-04 ACACGCGTTT TATTTATT TAACAACTTT chr2R:12344114-12344234 56 3.63e-04 GAGTAAAGTT TGTTTGCC TCAAAAATAA chr2R:10734474-10734594 104 3.63e-04 CAGTTTTATT TATTTATT TCTGGCTGA chr3R:8155908-8156028 104 3.63e-04 TCTACACTGC TATTTATT GCGCAGCTT chr3L:3858629-3858749 1 3.63e-04 . TATTTATT TTTCAAGTTA chr2R:23663213-23663333 31 3.63e-04 CGGCGTTCGT TATTTATT TGAAAACCTA chr3R:9530035-9530155 50 3.63e-04 tatatctata tgtgtgCT ACGGCAGTAT chr3R:31758891-31759011 39 3.63e-04 CCATGTTCAG TGTTTGCC TTTGCATAAT chr2L:18335793-18335913 112 3.63e-04 CAAGGAAAAA TATTTATT G chr3R:27067464-27067584 55 3.63e-04 GTGAGAGTTT TGTTTGCA GTTCATCAAC chr3L:13676970-13677090 13 3.63e-04 ACAGCTTGGT TATTTATT TTTCTTAATA chr2L:8361312-8361432 100 3.63e-04 GTCGACGTAC TATTTATT TTTTAGTGGA chr2R:23178995-23179115 43 3.63e-04 tttatttatt tatttatt tGCTTTGACT chr3R:9573431-9573551 103 4.88e-04 TTGTTGTTGC TATTTGTG CGAAAAAATT chr3L:4840103-4840223 44 4.88e-04 ATGAGTAAAT TGTTTACG TGCGTCAATC chr2R:14031238-14031358 64 4.88e-04 TTTGTGCAAA TATTTGTG TCATTAAACA chr2R:15807047-15807167 16 4.88e-04 CTGGCATATC TGTTTATC AAACGGAACA chr3L:3933985-3934105 57 4.88e-04 TCTGTTTATC TGTTTATC AATGCGCCTA chr3L:6519794-6519914 66 4.88e-04 GATACAAATT TGTTTATA GGTATATACA chr2R:10287610-10287730 70 4.88e-04 CCACTGTCTC TGTTTACG AAAGCATAAA chr3R:11660110-11660230 59 4.88e-04 ATTTGCCGTT TGTTTACG CTACTTACGT chr3R:15664623-15664743 60 4.88e-04 CGGTTAAGAA TGTTTATA AACAAAACAC chr3R:20648216-20648336 10 4.88e-04 TTGCCGGTT TGTTTATA AACAACAACT chr2L:2897885-2898005 12 4.88e-04 TCGCCGTAAA TGTTTATC GATTGCCTAT chr3L:8770925-8771045 72 5.19e-04 CAACTTCAGC TATTTACT TTCCATTCAT chr2R:11206315-11206435 113 5.19e-04 TGCATACACA TATTTACT chr3R:26222386-26222506 70 5.19e-04 GTCGGGCAAA TATTTACT TAAAGTTCAT chr3R:23134820-23134940 84 5.34e-04 GGCTAAATAA TGTGTGTG CCTTGTAAGT chrX:8857168-8857288 53 5.34e-04 TCAGTGAACT TGTGTGTG CCCAGCTGAC chr3R:12649749-12649869 33 5.34e-04 TGGTGTCTGC TGTGTGTG TCTGGAATTT chr2R:13033031-13033151 110 5.34e-04 TGCACAAAAG TGTGTGTG CGT chr3L:12804107-12804227 18 6.94e-04 GCTTTCTGCG TGTTTACC TTTGACAATG chr2R:7655351-7655471 76 6.94e-04 AAAATGTCAC TATTTGCG TTTCTCAAGA chr3R:14748782-14748902 52 6.94e-04 AAGTGCCGAT TGTTTACC TAGAAATTAA chr2R:18801154-18801274 44 6.94e-04 GCAACCATTA TGTTTACC GTTGGGCCCT chr2R:10212488-10212608 47 6.94e-04 ATTTTTGCCT TGTGTACT TTGACGGCGA chr3R:28545844-28545964 25 6.94e-04 CAGATGCAAA TATTTGCG CAAAACTACA chr2R:7881720-7881840 80 6.94e-04 TATTTATACG TGTTTACA TACCTCTGTG chr3L:20976471-20976591 96 6.94e-04 GACAGCAACA TGTTTACC GTTTGCCTCT chr3L:20276011-20276131 70 6.94e-04 CGTGGGGCAA TATTTGTA CACGCACATG chr2R:7451131-7451251 42 6.94e-04 CCAACACTCG TGTTTACA CGCGGCTAAT chrX:9644947-9645067 4 6.94e-04 atg tatttgta tatgtatgta chr3R:19182992-19183112 97 7.71e-04 TTTGTTTGGC TGTGTGCG AAGTTGGCTT chr3L:11531399-11531519 14 7.71e-04 TGCTATCAAC TGTGTGTA AGTATTTAGC chr3R:27986971-27987091 18 7.71e-04 ACTTTTCGGG TATTTATG TTTAAAGTTG chr3L:7962522-7962642 98 7.71e-04 GGGCAATGGA TATTTATG ATTGACTCGC chr2L:7571917-7572037 73 7.71e-04 CGTGTTTAAA TATTTATG CCTTGACAAA chr3L:7858417-7858537 82 7.71e-04 TAAACATGTA TGTGTGCG GTACACACAC chr3R:28552374-28552494 22 7.71e-04 TTTTGCTCGA TGTGTGCG TGTGCGAGTG chr2L:10615202-10615322 49 7.71e-04 AATGTCTCTT TGTGTGTC AGTCCGTGCT chr3L:11317569-11317689 71 7.71e-04 CAGTTGGCGT TGTGTGTC AATTAGAAAG chr2R:18667158-18667278 86 7.71e-04 TGCACTTGTC TGTGTGTA CATATTTTTA chr2L:7436029-7436149 63 7.71e-04 AGCCAACAAA TGTGTGTC ATCTGTGATG chr3L:5992392-5992512 32 8.32e-04 TTAACGACTT TATTTGCC CAACTTGGGC chr3L:5785349-5785469 72 8.32e-04 TTTATATCAA TATTTGCA CACAATTTGT chr2L:19998310-19998430 66 8.32e-04 GTAAGGTAAA TATTTGCC ACAAACTTTT chr3R:12701376-12701496 72 8.32e-04 TACATTCCAA TATGTGCT GCCTCCGAGG chr3R:22066695-22066815 96 8.51e-04 TGCCTCCCGA TGTGTATG TATGTGTATA chr2R:21611402-21611522 36 1.01e-03 TGGGTTCGCT TATTTATA GAGTGTCGAG chr2R:23611939-23612059 33 1.01e-03 TGCCCCCTTT TATTTACG GCTGTAAATA chr3L:11637060-11637180 108 1.01e-03 TTTGTGTACA TATTTATC TCGGC chrX:16596447-16596567 108 1.01e-03 ATTACATATG TATGTATT AACGT chr2R:8770987-8771107 68 1.08e-03 ccccCGTCCA TGTGTATA CACAAATAAT chr3L:20494059-20494179 56 1.16e-03 TATAAATACA TATTTACA TATGAAGCTA chrX:772748-772868 59 1.16e-03 TAGAGGGGCG TATTTACA CAAATGCTCG chrX:7227451-7227571 42 1.16e-03 ATCGCAGCTA TATTTACA TATGTCCGTC chrX:13088681-13088801 70 1.16e-03 ATTAACAAAA TATTTACA CAAATGCGGA chr3R:25524346-25524466 77 1.16e-03 TGCGTACAAA TATGTACT TGCCTTGGAG chr2L:7491482-7491602 85 1.16e-03 TCAATGTCAA TATTTACA CGACTATCGC chr3L:4014260-4014380 17 1.16e-03 TGCCTACTTG TATTTACA TACAAACAAG chr3R:23867239-23867359 97 1.16e-03 TCGGAGTAAA TATTTACA CAATATGCGT chrX:6720089-6720209 77 1.28e-03 tgtacatatg tatgtatg tatgtacaat chr3R:22635014-22635134 87 1.28e-03 CCAGACTATA TATGTATG TATAATATTC chr2L:19937919-19938039 79 1.31e-03 CCGGTAAACA TATGTGCA CTGCACACAG chr2R:21888942-21889062 83 1.39e-03 CTTATAAATG TATGTATA GTCCGTGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11437759-11437879 2.4e-05 19_[+1]_93 chr3R:15676823-15676943 2.4e-05 60_[+1]_52 chr3R:23817969-23818089 2.4e-05 43_[+1]_69 chr3R:26908854-26908974 2.4e-05 104_[+1]_8 chr3L:16429620-16429740 2.4e-05 13_[+1]_99 chr2L:9497366-9497486 2.4e-05 60_[+1]_52 chr2R:7049810-7049930 2.4e-05 73_[+1]_39 chr3L:4311453-4311573 2.4e-05 4_[+1]_108 chrX:2050748-2050868 2.4e-05 79_[+1]_33 chrX:17509676-17509796 2.4e-05 60_[+1]_52 chr3R:23971391-23971511 2.4e-05 59_[+1]_53 chr3L:15175436-15175556 2.4e-05 68_[+1]_44 chr2R:24323393-24323513 2.4e-05 67_[+1]_45 chr3L:20507725-20507845 2.4e-05 93_[+1]_19 chr2L:2446073-2446193 2.4e-05 46_[+1]_66 chr2R:11062381-11062501 2.4e-05 44_[+1]_68 chr2L:2989095-2989215 2.4e-05 42_[+1]_70 chr2R:15780254-15780374 2.4e-05 67_[+1]_45 chr3L:1420067-1420187 2.4e-05 19_[+1]_93 chr2R:9214309-9214429 2.4e-05 110_[+1]_2 chr3L:16056357-16056477 4.3e-05 47_[+1]_65 chr2R:15304872-15304992 4.3e-05 7_[+1]_105 chr2R:16820352-16820472 4.3e-05 98_[+1]_14 chr2L:16540976-16541096 4.3e-05 2_[+1]_110 chr3L:137060-137180 7.5e-05 21_[+1]_91 chr3R:19467584-19467704 7.5e-05 39_[+1]_73 chr2L:19336842-19336962 7.5e-05 33_[+1]_79 chr2L:19362478-19362598 7.5e-05 73_[+1]_39 chr2R:9269590-9269710 7.5e-05 11_[+1]_101 chr3R:9028861-9028981 7.5e-05 92_[+1]_20 chr3R:4973996-4974116 7.5e-05 85_[+1]_27 chr2L:12195003-12195123 7.5e-05 112_[+1] chr2L:8285354-8285474 7.5e-05 18_[+1]_94 chr3L:2591140-2591260 7.5e-05 80_[+1]_32 chr2L:17255032-17255152 7.5e-05 96_[+1]_16 chr2R:20231597-20231717 7.5e-05 72_[+1]_40 chr3R:22684168-22684288 9.4e-05 66_[+1]_46 chr3R:24008297-24008417 9.4e-05 75_[+1]_37 chr2L:1735278-1735398 9.4e-05 24_[+1]_88 chrX:15490683-15490803 9.4e-05 43_[+1]_69 chrX:2332472-2332592 9.4e-05 2_[+1]_110 chr2R:21874166-21874286 9.4e-05 44_[+1]_68 chrX:3967731-3967851 0.00015 2_[+1]_110 chrX:17481997-17482117 0.00015 46_[+1]_66 chr3R:16081399-16081519 0.00015 10_[+1]_102 chr2L:16637352-16637472 0.00015 100_[+1]_12 chr2R:6811744-6811864 0.00015 106_[+1]_6 chr3L:16010375-16010495 0.00015 47_[+1]_65 chr3R:22067412-22067532 0.00015 8_[+1]_104 chr2R:13532024-13532144 0.00015 61_[+1]_51 chr2L:18496939-18497059 0.00023 17_[+1]_95 chr3L:14194314-14194434 0.00023 81_[+1]_31 chr3R:18999988-19000108 0.00023 10_[+1]_102 chr2R:22384232-22384352 0.00023 23_[+1]_89 chr2L:14307657-14307777 0.00023 78_[+1]_34 chr3L:8379292-8379412 0.00023 74_[+1]_38 chr2L:12457342-12457462 0.00023 59_[+1]_53 chr3R:14415926-14416046 0.00023 52_[+1]_60 chr2R:18877820-18877940 0.00023 96_[+1]_16 chr2R:12441363-12441483 0.00023 39_[+1]_73 chr3R:14396718-14396838 0.00023 60_[+1]_52 chr3R:15477796-15477916 0.00023 42_[+1]_70 chr3R:20263005-20263125 0.00025 10_[+1]_102 chr3L:7858619-7858739 0.00025 105_[+1]_7 chr3L:5947164-5947284 0.00025 39_[+1]_73 chr3L:17656882-17657002 0.00025 37_[+1]_75 chr2R:20063351-20063471 0.00025 38_[+1]_74 chr2L:7165984-7166104 0.00025 104_[+1]_8 chr3R:22053367-22053487 0.00027 32_[+1]_80 chr3R:5107051-5107171 0.00036 10_[+1]_102 chr3R:31603862-31603982 0.00036 42_[+1]_70 chr2L:7215805-7215925 0.00036 96_[+1]_16 chr3R:23220646-23220766 0.00036 14_[+1]_98 chr2R:12344114-12344234 0.00036 55_[+1]_57 chr2R:10734474-10734594 0.00036 103_[+1]_9 chr3R:8155908-8156028 0.00036 103_[+1]_9 chr3L:3858629-3858749 0.00036 [+1]_112 chr2R:23663213-23663333 0.00036 30_[+1]_82 chr3R:9530035-9530155 0.00036 49_[+1]_63 chr3R:31758891-31759011 0.00036 38_[+1]_74 chr2L:18335793-18335913 0.00036 111_[+1]_1 chr3R:27067464-27067584 0.00036 54_[+1]_58 chr3L:13676970-13677090 0.00036 12_[+1]_100 chr2L:8361312-8361432 0.00036 99_[+1]_13 chr2R:23178995-23179115 0.00036 42_[+1]_70 chr3R:9573431-9573551 0.00049 102_[+1]_10 chr3L:4840103-4840223 0.00049 43_[+1]_69 chr2R:14031238-14031358 0.00049 63_[+1]_49 chr2R:15807047-15807167 0.00049 15_[+1]_97 chr3L:3933985-3934105 0.00049 56_[+1]_56 chr3L:6519794-6519914 0.00049 65_[+1]_47 chr2R:10287610-10287730 0.00049 69_[+1]_43 chr3R:11660110-11660230 0.00049 58_[+1]_54 chr3R:15664623-15664743 0.00049 59_[+1]_53 chr3R:20648216-20648336 0.00049 9_[+1]_103 chr2L:2897885-2898005 0.00049 11_[+1]_101 chr3L:8770925-8771045 0.00052 71_[+1]_41 chr2R:11206315-11206435 0.00052 112_[+1] chr3R:26222386-26222506 0.00052 69_[+1]_43 chr3R:23134820-23134940 0.00053 83_[+1]_29 chrX:8857168-8857288 0.00053 52_[+1]_60 chr3R:12649749-12649869 0.00053 32_[+1]_80 chr2R:13033031-13033151 0.00053 109_[+1]_3 chr3L:12804107-12804227 0.00069 17_[+1]_95 chr2R:7655351-7655471 0.00069 75_[+1]_37 chr3R:14748782-14748902 0.00069 51_[+1]_61 chr2R:18801154-18801274 0.00069 43_[+1]_69 chr2R:10212488-10212608 0.00069 46_[+1]_66 chr3R:28545844-28545964 0.00069 24_[+1]_88 chr2R:7881720-7881840 0.00069 79_[+1]_33 chr3L:20976471-20976591 0.00069 95_[+1]_17 chr3L:20276011-20276131 0.00069 69_[+1]_43 chr2R:7451131-7451251 0.00069 41_[+1]_71 chrX:9644947-9645067 0.00069 3_[+1]_109 chr3R:19182992-19183112 0.00077 96_[+1]_16 chr3L:11531399-11531519 0.00077 13_[+1]_99 chr3R:27986971-27987091 0.00077 17_[+1]_95 chr3L:7962522-7962642 0.00077 97_[+1]_15 chr2L:7571917-7572037 0.00077 72_[+1]_40 chr3L:7858417-7858537 0.00077 81_[+1]_31 chr3R:28552374-28552494 0.00077 21_[+1]_91 chr2L:10615202-10615322 0.00077 48_[+1]_64 chr3L:11317569-11317689 0.00077 70_[+1]_42 chr2R:18667158-18667278 0.00077 85_[+1]_27 chr2L:7436029-7436149 0.00077 62_[+1]_50 chr3L:5992392-5992512 0.00083 31_[+1]_81 chr3L:5785349-5785469 0.00083 71_[+1]_41 chr2L:19998310-19998430 0.00083 65_[+1]_47 chr3R:12701376-12701496 0.00083 71_[+1]_41 chr3R:22066695-22066815 0.00085 95_[+1]_17 chr2R:21611402-21611522 0.001 35_[+1]_77 chr2R:23611939-23612059 0.001 32_[+1]_80 chr3L:11637060-11637180 0.001 107_[+1]_5 chrX:16596447-16596567 0.001 107_[+1]_5 chr2R:8770987-8771107 0.0011 67_[+1]_45 chr3L:20494059-20494179 0.0012 55_[+1]_57 chrX:772748-772868 0.0012 58_[+1]_54 chrX:7227451-7227571 0.0012 41_[+1]_71 chrX:13088681-13088801 0.0012 69_[+1]_43 chr3R:25524346-25524466 0.0012 76_[+1]_36 chr2L:7491482-7491602 0.0012 84_[+1]_28 chr3L:4014260-4014380 0.0012 16_[+1]_96 chr3R:23867239-23867359 0.0012 96_[+1]_16 chrX:6720089-6720209 0.0013 76_[+1]_36 chr3R:22635014-22635134 0.0013 86_[+1]_26 chr2L:19937919-19938039 0.0013 78_[+1]_34 chr2R:21888942-21889062 0.0014 82_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTTTRYT width=8 seqs=147 chr3R:11437759-11437879 ( 20) TGTTTGTT 1 chr3R:15676823-15676943 ( 61) TGTTTGTT 1 chr3R:23817969-23818089 ( 44) TGTTTGTT 1 chr3R:26908854-26908974 ( 105) TGTTTGTT 1 chr3L:16429620-16429740 ( 14) TGTTTGTT 1 chr2L:9497366-9497486 ( 61) TGTTTGTT 1 chr2R:7049810-7049930 ( 74) TGTTTGTT 1 chr3L:4311453-4311573 ( 5) TGTTTGTT 1 chrX:2050748-2050868 ( 80) TGTTTGTT 1 chrX:17509676-17509796 ( 61) TGTTTGTT 1 chr3R:23971391-23971511 ( 60) TGTTTGTT 1 chr3L:15175436-15175556 ( 69) TGTTTGTT 1 chr2R:24323393-24323513 ( 68) TGTTTGTT 1 chr3L:20507725-20507845 ( 94) TGTTTGTT 1 chr2L:2446073-2446193 ( 47) TGTTTGTT 1 chr2R:11062381-11062501 ( 45) TGTTTGTT 1 chr2L:2989095-2989215 ( 43) TGTTTGTT 1 chr2R:15780254-15780374 ( 68) TGTTTGTT 1 chr3L:1420067-1420187 ( 20) TGTTTGTT 1 chr2R:9214309-9214429 ( 111) TGTTTGTT 1 chr3L:16056357-16056477 ( 48) TGTTTGCT 1 chr2R:15304872-15304992 ( 8) TGTTTGCT 1 chr2R:16820352-16820472 ( 99) TGTTTGCT 1 chr2L:16540976-16541096 ( 3) TGTTTGCT 1 chr3L:137060-137180 ( 22) TGTTTATT 1 chr3R:19467584-19467704 ( 40) TGTTTATT 1 chr2L:19336842-19336962 ( 34) TGTTTATT 1 chr2L:19362478-19362598 ( 74) TGTTTATT 1 chr2R:9269590-9269710 ( 12) TGTTTATT 1 chr3R:9028861-9028981 ( 93) TGTTTATT 1 chr3R:4973996-4974116 ( 86) TGTTTATT 1 chr2L:12195003-12195123 ( 113) TGTTTATT 1 chr2L:8285354-8285474 ( 19) TGTTTATT 1 chr3L:2591140-2591260 ( 81) TGTTTATT 1 chr2L:17255032-17255152 ( 97) TGTTTATT 1 chr2R:20231597-20231717 ( 73) TGTTTATT 1 chr3R:22684168-22684288 ( 67) TGTTTGTG 1 chr3R:24008297-24008417 ( 76) TGTTTGTG 1 chr2L:1735278-1735398 ( 25) TGTTTGTG 1 chrX:15490683-15490803 ( 44) TGTTTGTG 1 chrX:2332472-2332592 ( 3) TGTTTGTG 1 chr2R:21874166-21874286 ( 45) TGTTTGTG 1 chrX:3967731-3967851 ( 3) TGTTTACT 1 chrX:17481997-17482117 ( 47) TGTTTACT 1 chr3R:16081399-16081519 ( 11) TATTTGTT 1 chr2L:16637352-16637472 ( 101) TGTTTACT 1 chr2R:6811744-6811864 ( 107) TGTTTACT 1 chr3L:16010375-16010495 ( 48) TATTTGTT 1 chr3R:22067412-22067532 ( 9) TATTTGTT 1 chr2R:13532024-13532144 ( 62) TATTTGTT 1 chr2L:18496939-18497059 ( 18) TGTGTGTT 1 chr3L:14194314-14194434 ( 82) TGTGTGTT 1 chr3R:18999988-19000108 ( 11) TGTTTGTC 1 chr2R:22384232-22384352 ( 24) TGTGTGTT 1 chr2L:14307657-14307777 ( 79) TGTTTGTC 1 chr3L:8379292-8379412 ( 75) TGTTTGTC 1 chr2L:12457342-12457462 ( 60) TGTGTGTT 1 chr3R:14415926-14416046 ( 53) TGTGTGTT 1 chr2R:18877820-18877940 ( 97) TGTGTGTT 1 chr2R:12441363-12441483 ( 40) TGTTTGTA 1 chr3R:14396718-14396838 ( 61) TGTGTGTT 1 chr3R:15477796-15477916 ( 43) TGTTTGTA 1 chr3R:20263005-20263125 ( 11) TATTTGCT 1 chr3L:7858619-7858739 ( 106) TATTTGCT 1 chr3L:5947164-5947284 ( 40) TATTTGCT 1 chr3L:17656882-17657002 ( 38) TATTTGCT 1 chr2R:20063351-20063471 ( 39) TATTTGCT 1 chr2L:7165984-7166104 ( 105) TATTTGCT 1 chr3R:22053367-22053487 ( 33) TGTTTATG 1 chr3R:5107051-5107171 ( 11) TGTTTGCC 1 chr3R:31603862-31603982 ( 43) TGTGTGCT 1 chr2L:7215805-7215925 ( 97) TGTTTGCA 1 chr3R:23220646-23220766 ( 15) TATTTATT 1 chr2R:12344114-12344234 ( 56) TGTTTGCC 1 chr2R:10734474-10734594 ( 104) TATTTATT 1 chr3R:8155908-8156028 ( 104) TATTTATT 1 chr3L:3858629-3858749 ( 1) TATTTATT 1 chr2R:23663213-23663333 ( 31) TATTTATT 1 chr3R:9530035-9530155 ( 50) TGTGTGCT 1 chr3R:31758891-31759011 ( 39) TGTTTGCC 1 chr2L:18335793-18335913 ( 112) TATTTATT 1 chr3R:27067464-27067584 ( 55) TGTTTGCA 1 chr3L:13676970-13677090 ( 13) TATTTATT 1 chr2L:8361312-8361432 ( 100) TATTTATT 1 chr2R:23178995-23179115 ( 43) TATTTATT 1 chr3R:9573431-9573551 ( 103) TATTTGTG 1 chr3L:4840103-4840223 ( 44) TGTTTACG 1 chr2R:14031238-14031358 ( 64) TATTTGTG 1 chr2R:15807047-15807167 ( 16) TGTTTATC 1 chr3L:3933985-3934105 ( 57) TGTTTATC 1 chr3L:6519794-6519914 ( 66) TGTTTATA 1 chr2R:10287610-10287730 ( 70) TGTTTACG 1 chr3R:11660110-11660230 ( 59) TGTTTACG 1 chr3R:15664623-15664743 ( 60) TGTTTATA 1 chr3R:20648216-20648336 ( 10) TGTTTATA 1 chr2L:2897885-2898005 ( 12) TGTTTATC 1 chr3L:8770925-8771045 ( 72) TATTTACT 1 chr2R:11206315-11206435 ( 113) TATTTACT 1 chr3R:26222386-26222506 ( 70) TATTTACT 1 chr3R:23134820-23134940 ( 84) TGTGTGTG 1 chrX:8857168-8857288 ( 53) TGTGTGTG 1 chr3R:12649749-12649869 ( 33) TGTGTGTG 1 chr2R:13033031-13033151 ( 110) TGTGTGTG 1 chr3L:12804107-12804227 ( 18) TGTTTACC 1 chr2R:7655351-7655471 ( 76) TATTTGCG 1 chr3R:14748782-14748902 ( 52) TGTTTACC 1 chr2R:18801154-18801274 ( 44) TGTTTACC 1 chr2R:10212488-10212608 ( 47) TGTGTACT 1 chr3R:28545844-28545964 ( 25) TATTTGCG 1 chr2R:7881720-7881840 ( 80) TGTTTACA 1 chr3L:20976471-20976591 ( 96) TGTTTACC 1 chr3L:20276011-20276131 ( 70) TATTTGTA 1 chr2R:7451131-7451251 ( 42) TGTTTACA 1 chrX:9644947-9645067 ( 4) TATTTGTA 1 chr3R:19182992-19183112 ( 97) TGTGTGCG 1 chr3L:11531399-11531519 ( 14) TGTGTGTA 1 chr3R:27986971-27987091 ( 18) TATTTATG 1 chr3L:7962522-7962642 ( 98) TATTTATG 1 chr2L:7571917-7572037 ( 73) TATTTATG 1 chr3L:7858417-7858537 ( 82) TGTGTGCG 1 chr3R:28552374-28552494 ( 22) TGTGTGCG 1 chr2L:10615202-10615322 ( 49) TGTGTGTC 1 chr3L:11317569-11317689 ( 71) TGTGTGTC 1 chr2R:18667158-18667278 ( 86) TGTGTGTA 1 chr2L:7436029-7436149 ( 63) TGTGTGTC 1 chr3L:5992392-5992512 ( 32) TATTTGCC 1 chr3L:5785349-5785469 ( 72) TATTTGCA 1 chr2L:19998310-19998430 ( 66) TATTTGCC 1 chr3R:12701376-12701496 ( 72) TATGTGCT 1 chr3R:22066695-22066815 ( 96) TGTGTATG 1 chr2R:21611402-21611522 ( 36) TATTTATA 1 chr2R:23611939-23612059 ( 33) TATTTACG 1 chr3L:11637060-11637180 ( 108) TATTTATC 1 chrX:16596447-16596567 ( 108) TATGTATT 1 chr2R:8770987-8771107 ( 68) TGTGTATA 1 chr3L:20494059-20494179 ( 56) TATTTACA 1 chrX:772748-772868 ( 59) TATTTACA 1 chrX:7227451-7227571 ( 42) TATTTACA 1 chrX:13088681-13088801 ( 70) TATTTACA 1 chr3R:25524346-25524466 ( 77) TATGTACT 1 chr2L:7491482-7491602 ( 85) TATTTACA 1 chr3L:4014260-4014380 ( 17) TATTTACA 1 chr3R:23867239-23867359 ( 97) TATTTACA 1 chrX:6720089-6720209 ( 77) TATGTATG 1 chr3R:22635014-22635134 ( 87) TATGTATG 1 chr2L:19937919-19938039 ( 79) TATGTGCA 1 chr2R:21888942-21889062 ( 83) TATGTATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.62225 E= 1.9e-043 -1384 -1384 -1384 182 27 -1384 158 -1384 -1384 -1384 -1384 182 -1384 -1384 -5 148 -1384 -1384 -1384 182 62 -1384 135 -1384 -1384 78 -1384 117 -76 -70 -20 85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 147 E= 1.9e-043 0.000000 0.000000 0.000000 1.000000 0.346939 0.000000 0.653061 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.210884 0.789116 0.000000 0.000000 0.000000 1.000000 0.442177 0.000000 0.557823 0.000000 0.000000 0.360544 0.000000 0.639456 0.170068 0.129252 0.190476 0.510204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRYT MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]T[TG]T[GA][TC]T -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF RYAAACAH MEME-2 width = 8 sites = 132 llr = 929 E-value = 2.9e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:a8a:a5 pos.-specific C :5:2:7:2 probability G 6::::::: matrix T :5:::3:3 bits 2.3 2.0 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.1 ******* (10.2 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus AT T T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:768702-768822 22 1.90e-05 CGCTCGATCA GCAAACAA AAACATAGAA chr3L:16429620-16429740 47 1.90e-05 ATGGTAAATA GCAAACAA CAAATAGTAA chr2L:9497366-9497486 42 1.90e-05 aagacagaga gCAAACAA CAACTTTTAA chr2R:12344114-12344234 75 1.90e-05 CAAAAATAAA GCAAACAA AAACATAAAC chr3L:8379292-8379412 85 1.90e-05 TGTTTGTCGG GCAAACAA TGGGGCGGAG chr2L:1399548-1399668 44 1.90e-05 ATGCACCTAA GCAAACAA TCGCGCTCAC chr3L:8850066-8850186 37 1.90e-05 ACACAAGCAA GCAAACAA ATTACCTCTA chr3R:23867239-23867359 51 1.90e-05 GGAAACAAAG GCAAACAA ATAATTCGAG chr2L:6291797-6291917 83 5.86e-05 TTTATCGAAA GTAAACAA ACAGCGTGAG chr3R:6765012-6765132 56 5.86e-05 GTCGGCTTGT GCAAACAC ACATTAATAT chr3R:27986971-27987091 37 5.86e-05 TTAAAGTTGT GTAAACAA GCCCACTGAT chr3R:23817969-23818089 53 5.86e-05 ATGTTTGTTT GTAAACAA AACCAGTTGG chr3R:14748782-14748902 95 5.86e-05 AATACAGTGC GTAAACAA ATAAAAACAA chr2R:21611402-21611522 88 5.86e-05 AGGAACGCAT GCAAACAC CATTGGAACG chr2L:19998310-19998430 108 5.86e-05 TGCGTATACG GTAAACAA TTTGA chr2L:7571917-7572037 95 5.86e-05 GACAAATTCT GTAAACAA ATTTGTCTTT chr3L:7858417-7858537 33 5.86e-05 ATATCACCGT GCAAACAC GGCAACCAAA chr3R:19822258-19822378 79 5.86e-05 TTTGACTTGA GTAAACAA CAATTTCTAA chr2L:1735278-1735398 101 5.86e-05 ATGAATGTTT GTAAACAA TTCTGCTAAT chr2R:14031238-14031358 46 5.86e-05 ATACATAAAT GCAAACAC TTTGTGCAAA chr2L:18981629-18981749 82 5.86e-05 CATGGCCTGC GCAAACAC AGGTATGTAA chr2L:18648078-18648198 51 5.86e-05 ACAGCTGCAC GCAAACAC CAGCGGCATC chr2R:6811744-6811864 44 5.86e-05 CTGCCCAATT GTAAACAA CCCACGCCTA chr2R:7694323-7694443 43 5.86e-05 AAACAAATGC GTAAACAA ACAAAGAGAG chr2R:9266584-9266704 31 5.86e-05 ATTCGGAAAT GTAAACAA ACCAAACGTA chr2L:308304-308424 19 5.86e-05 CATGACCTTT GTAAACAA ACAGACTGGC chr3L:16767863-16767983 58 5.86e-05 CACTCGAAAA GTAAACAA CAATTAAGGA chr3L:15071398-15071518 48 5.86e-05 AATGCATATT GTAAACAA GCTGGGCTAC chr3L:2493875-2493995 46 7.73e-05 CTGAAGTCGA GCAAACAT ACACAAACAT chr3R:31603862-31603982 27 7.73e-05 GAACACTTGA GCAAACAT CACCATATTG chr3L:5785349-5785469 51 7.73e-05 TAAACAAAGT GCAAACAT GGATTTATAT chr3L:8770925-8771045 113 7.73e-05 GAACATCAGG GCAAACAT chr3R:11762560-11762680 61 9.60e-05 CAAAACAACT GTAAACAC CACACAGACT chr2R:7655351-7655471 13 9.60e-05 CCTTAACAGG GTAAACAC AGCTGTTTTC chr2R:9269590-9269710 105 9.60e-05 GAGGTACAGA GTAAACAC TATTCAAT chrX:16596447-16596567 61 9.60e-05 GGAATTGGTA GTAAACAC AAATATTATT chr3R:20561021-20561141 90 1.21e-04 gtgggccaaa acaaacaa attctgttAT chr3L:9372719-9372839 79 1.21e-04 TGTCAGCTGG ACAAACAA GACGACACCA chr3R:9530035-9530155 86 1.21e-04 CGCTAAACAA ACAAACAA ACAGCCAGGG chr3L:2004977-2005097 81 1.21e-04 agacaaacaa acaaacaa acaaCATGTA chr3R:10030175-10030295 28 1.21e-04 AGCGGAGCCA ACAAACAA ATGCGCCACA chr3R:8741293-8741413 28 1.21e-04 CAAACATTAA ACAAACAA TTCTTCGAGG chr3L:4014260-4014380 26 1.21e-04 GTATTTACAT ACAAACAA GTgctgcagc chr3R:20648216-20648336 62 1.21e-04 GAAAACCCAA ACAAACAA ACAAATACTA chr3R:23134820-23134940 32 1.46e-04 GGTGCGTAAG GTAAACAT TTACGTATAC chr3R:14396718-14396838 99 1.46e-04 AAGGCCTGGT GTAAACAT AAATATTGAA chr2L:1400308-1400428 101 1.72e-04 AAATGCATAT GCAAATAA CGTGGCCAGT chr2L:14307657-14307777 28 1.72e-04 GACTTTGTAA GCAAATAA ACATACAAAT chr2R:8998021-8998141 5 1.72e-04 CAAA GCAAATAA GATTCCTATT chr3R:31070904-31071024 50 1.72e-04 CACTGCCTAA GCAAATAA GAAATAAAAA chr3R:10599153-10599273 71 2.24e-04 AAGTGGTTCG ATAAACAA ATATTTGAGG chr2R:9542594-9542714 50 2.24e-04 Gcacatacac acaaacac acacacacaT chr3L:5992392-5992512 112 2.24e-04 AAGCTAACAA ATaaacaa a chr2R:7049810-7049930 108 2.24e-04 GAATATTTAA ATAAACAA AAAAC chr2R:8770987-8771107 22 2.24e-04 GATTAGCCGC ACAAAcac tacccacttc chr2R:22384232-22384352 51 2.24e-04 CGCAATGTAA ATAAACAA AGCGCCAAAG chr2L:19319677-19319797 82 2.24e-04 ataaattaaa ataaacaa attaagaaTA chr2R:6681374-6681494 34 2.24e-04 TAATATCAAA ATAAACAA TCGTTGCCAA chr2L:17255032-17255152 62 2.24e-04 ATCCAAATTC ATAAACAA CAAAGCTGCA chr2L:8361312-8361432 3 2.24e-04 GC ACAAACAC GGCACATCTT chr3R:22053367-22053487 84 2.24e-04 TACTCCAGAA ATAAACAA GCCAGAAGCG chr3R:20263005-20263125 103 3.16e-04 AAATTGTAAG GTAAATAA TCCACATGAG chr3R:27148891-27149011 54 3.16e-04 GCACTCGAAA ACAAACAT AAACATCCGA chr3R:14284456-14284576 42 3.16e-04 AAAACGCACT GTAAATAA AGGTGTAAAT chr2L:7215805-7215925 63 3.16e-04 AAATATTTAA GCAAATAC ACGAAAATTA chr3L:8456578-8456698 28 3.16e-04 CAAAGTGCCT ACAAACAT TTAATGGGAT chr2R:16095522-16095642 99 3.16e-04 ACTCACTCTC GCACACAA ATAAATAAGC chr2L:5338748-5338868 48 3.16e-04 TATGCACTTA GCACACAA TTCTTCGAGT chr2R:15807047-15807167 96 3.16e-04 CGGAAATCAG ACAAACAT TGTGCATTTG chrX:19375563-19375683 92 3.16e-04 AGCACAGTGA GCACACAA TGTAAAACGC chr3R:31758891-31759011 74 3.16e-04 TTTGACAGGG GTAAATAA TCGGGCTGGG chr2L:2446073-2446193 85 3.16e-04 TACAATCGCT GTAAATAA ATAGGAGCCG chr2R:15780254-15780374 103 3.16e-04 CAGTTTAAAT ACAAACAT GAGTTAGACA chr2L:14211177-14211297 31 3.16e-04 TGATGTCTAA GTAAATAA ATACCAGAGT chr3R:19120740-19120860 62 3.41e-04 AAATGTATAA ATAAACAC CAGAAGTTGG chr3R:9419043-9419163 21 3.66e-04 AGTTTGAATG GCAAATAT GCGATAGAAG chrX:6720089-6720209 38 3.66e-04 GTTTAGTTAA GCAAatat atgtacatat chr3R:18999988-19000108 104 3.66e-04 AAATGCAAAG GCAAATAT TTACACGAG chr2R:10212488-10212608 103 3.66e-04 CGAAAGGAAG GCAAATAT TGGGTGAAAT chr2L:14310950-14311070 38 3.66e-04 GTTAGCAGCA GCAAATAT TGACATTTGC chr2L:18496939-18497059 79 4.54e-04 AAATCGTTGG ATAAACAT GAAACAGTTG chr3R:11437759-11437879 60 4.54e-04 TATTCTCGAA GCACACAC ACTCGAAAaa chr2R:23611939-23612059 44 4.54e-04 ATTTACGGCT GTAAATAC GGGGGGCAAT chr2R:14073608-14073728 91 4.54e-04 CCAGCAAAAA GTAAATAC CCACTGCCGA chr3L:4840103-4840223 98 4.54e-04 ATCTGTGTGG GCACACAC TCAACCAATA chr3R:23971391-23971511 12 4.54e-04 CCTCCCCCCT GCACACAC AAAGATAATT chr3R:28545844-28545964 68 4.54e-04 TGAGGGGCCA Gcacacac acacacacgc chr2L:7491482-7491602 107 4.54e-04 TATCGCACCG ATAAACAT GAAAAG chr3R:4974659-4974779 69 4.54e-04 TTCGGCTTGT GTAAATAC TCCGGCGCAG chrX:9447684-9447804 39 4.54e-04 CCAGAAATAA ATAAACAT ACGACTGCAA chr3R:14463568-14463688 22 4.54e-04 GCGGCACAGT GCACACAC GGCGTATGCG chr2R:21888942-21889062 97 4.54e-04 TATAGTCCGT GTAAATAC TGTAGCATTG chr3R:9725028-9725148 18 4.54e-04 AGCTTATAAT ATAAACAT TTCAATAGTT chr2R:13532024-13532144 42 4.54e-04 ATAAAGTAAG GTAAATAC TATTTACATC chr3L:21465418-21465538 108 4.54e-04 ACGCACACTC GCACACAC CACGC chr2L:20016570-20016690 88 4.88e-04 AAATAGTTTC ACAAATAA AGACAACTAG chr2L:12049338-12049458 29 4.88e-04 GAAGAGTTAA ACAAATAA TAGGGCCCGC chr3R:9889107-9889227 50 5.35e-04 CAAGTGCCAA GTAAATAT GCTCTGATAC chr2L:470052-470172 39 5.35e-04 GTATGGCTCT GTAAATAT CTGAGTGTTA chr2L:19937919-19938039 52 5.35e-04 TAAATGTCAT GTAAATAT TTGATCAGCC chr3R:8155908-8156028 61 5.35e-04 CTAAGGCTAA GTAAATAT ATACCGAGTA chr3L:11637060-11637180 55 5.35e-04 CACTGTTTGA GTAAATAT ATATATAGCC chr3R:12701376-12701496 41 5.35e-04 AATTGGAATA GTAAATAT ACATATGTAT chrX:13088681-13088801 11 5.49e-04 ATACATGTAT GTacacac acacacgcgc chr3L:16056357-16056477 58 6.52e-04 TGTTTGCTTG ATAAATAA GTGGAGGGAA chrX:17509676-17509796 35 6.52e-04 GTCTTCGGAT GCAAACAG TCGGGACCAC chr2R:15250797-15250917 87 6.52e-04 AGCTGACACC ACACACAA ATATTTTTAG chr3L:16699636-16699756 45 6.52e-04 AATTGCATAA GCAAACAG TGTATACAGT chr2R:18148501-18148621 68 6.52e-04 TCTTTGCAGT ATAAATAA TTGGCTAAGA chr2R:15530003-15530123 39 6.52e-04 TTATGTAAAT ATAAATAA GATGTGCAAT chr2R:18877820-18877940 50 6.52e-04 CTGAGTATCA ACACACAA ACAGCCACCA chr3R:21871725-21871845 93 6.52e-04 CGTCGACCAA ATAAATAA ATAGAAACTT chrX:17743704-17743824 12 6.70e-04 TATCACATAT GTACACAT ATATCGCTCA chr2R:16820352-16820472 90 7.22e-04 AGACGGCCAG ACAAATAT TTGTTTGCTT chr3R:28552374-28552494 79 7.22e-04 ACATAACTGC ACAAATAT GTACATAGCA chr2L:12457342-12457462 70 7.22e-04 tgtgtgtTAA ACAAATAT CACAATCGAG chr2R:13033031-13033151 89 7.22e-04 ACGATTATGA ACAAATAT AAATGCACAA chr2R:18436202-18436322 81 8.13e-04 AAACAGAAAT ACACACAC ATTATATGAA chr3R:29138465-29138585 41 8.13e-04 CAACGGTAAT GTAAACAG TGTTCAAATG chr3L:20494059-20494179 47 8.13e-04 AATAAATATT ATAAATAC ATATTTACAT chr3L:17489168-17489288 19 8.13e-04 TAAAACCAAA ATAAATAC GCacagataa chr3L:6519794-6519914 79 8.13e-04 TTATAGGTAT ATACACAA CACATTCTGT chr3R:4973996-4974116 40 8.13e-04 GCTGCGCTCC ACACACAC TTTATTTATT chr3R:11660110-11660230 86 8.13e-04 TATCGGAAAG ATACACAA CTCTGGTGCC chr3L:11317569-11317689 42 9.15e-04 ACAAGCTGAT ACACACAT AAGGCAGAGT chr3R:22066695-22066815 7 9.15e-04 TATTGT ATAAATAT GAAATATTTT chr2R:12441363-12441483 65 9.15e-04 ATCGTGGCCA ATAAATAT TTGGGCATCG chr3R:19467584-19467704 67 1.01e-03 GTATACGTAC GTACATAC CCACATTGTT chr3R:5229550-5229670 50 1.01e-03 AGTTGATCAA ATACACAT TGCCCTGAGC chrX:3967731-3967851 45 1.06e-03 TAAATAGCAA GCAAATAG TCAATATTTA chr3L:20276011-20276131 16 1.06e-03 TTTTCTAAAA GCAAATAG TGCCTGCCGT chr3L:10741295-10741415 93 1.26e-03 TTCGGCTTTT GTACACAG GGCGTATGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:768702-768822 1.9e-05 21_[+2]_91 chr3L:16429620-16429740 1.9e-05 46_[+2]_66 chr2L:9497366-9497486 1.9e-05 41_[+2]_71 chr2R:12344114-12344234 1.9e-05 74_[+2]_38 chr3L:8379292-8379412 1.9e-05 84_[+2]_28 chr2L:1399548-1399668 1.9e-05 43_[+2]_69 chr3L:8850066-8850186 1.9e-05 36_[+2]_76 chr3R:23867239-23867359 1.9e-05 50_[+2]_62 chr2L:6291797-6291917 5.9e-05 82_[+2]_30 chr3R:6765012-6765132 5.9e-05 55_[+2]_57 chr3R:27986971-27987091 5.9e-05 36_[+2]_76 chr3R:23817969-23818089 5.9e-05 52_[+2]_60 chr3R:14748782-14748902 5.9e-05 94_[+2]_18 chr2R:21611402-21611522 5.9e-05 87_[+2]_25 chr2L:19998310-19998430 5.9e-05 107_[+2]_5 chr2L:7571917-7572037 5.9e-05 94_[+2]_18 chr3L:7858417-7858537 5.9e-05 32_[+2]_80 chr3R:19822258-19822378 5.9e-05 78_[+2]_34 chr2L:1735278-1735398 5.9e-05 100_[+2]_12 chr2R:14031238-14031358 5.9e-05 45_[+2]_67 chr2L:18981629-18981749 5.9e-05 81_[+2]_31 chr2L:18648078-18648198 5.9e-05 50_[+2]_62 chr2R:6811744-6811864 5.9e-05 43_[+2]_69 chr2R:7694323-7694443 5.9e-05 42_[+2]_70 chr2R:9266584-9266704 5.9e-05 30_[+2]_82 chr2L:308304-308424 5.9e-05 18_[+2]_94 chr3L:16767863-16767983 5.9e-05 57_[+2]_55 chr3L:15071398-15071518 5.9e-05 47_[+2]_65 chr3L:2493875-2493995 7.7e-05 45_[+2]_67 chr3R:31603862-31603982 7.7e-05 26_[+2]_86 chr3L:5785349-5785469 7.7e-05 50_[+2]_62 chr3L:8770925-8771045 7.7e-05 112_[+2] chr3R:11762560-11762680 9.6e-05 60_[+2]_52 chr2R:7655351-7655471 9.6e-05 12_[+2]_100 chr2R:9269590-9269710 9.6e-05 104_[+2]_8 chrX:16596447-16596567 9.6e-05 60_[+2]_52 chr3R:20561021-20561141 0.00012 89_[+2]_23 chr3L:9372719-9372839 0.00012 78_[+2]_34 chr3R:9530035-9530155 0.00012 85_[+2]_27 chr3L:2004977-2005097 0.00012 80_[+2]_32 chr3R:10030175-10030295 0.00012 27_[+2]_85 chr3R:8741293-8741413 0.00012 27_[+2]_85 chr3L:4014260-4014380 0.00012 25_[+2]_87 chr3R:20648216-20648336 0.00012 61_[+2]_51 chr3R:23134820-23134940 0.00015 31_[+2]_81 chr3R:14396718-14396838 0.00015 98_[+2]_14 chr2L:1400308-1400428 0.00017 100_[+2]_12 chr2L:14307657-14307777 0.00017 27_[+2]_85 chr2R:8998021-8998141 0.00017 4_[+2]_108 chr3R:31070904-31071024 0.00017 49_[+2]_63 chr3R:10599153-10599273 0.00022 70_[+2]_42 chr2R:9542594-9542714 0.00022 49_[+2]_63 chr3L:5992392-5992512 0.00022 111_[+2]_1 chr2R:7049810-7049930 0.00022 107_[+2]_5 chr2R:8770987-8771107 0.00022 21_[+2]_91 chr2R:22384232-22384352 0.00022 50_[+2]_62 chr2L:19319677-19319797 0.00022 81_[+2]_31 chr2R:6681374-6681494 0.00022 33_[+2]_79 chr2L:17255032-17255152 0.00022 61_[+2]_51 chr2L:8361312-8361432 0.00022 2_[+2]_110 chr3R:22053367-22053487 0.00022 83_[+2]_29 chr3R:20263005-20263125 0.00032 102_[+2]_10 chr3R:27148891-27149011 0.00032 53_[+2]_59 chr3R:14284456-14284576 0.00032 41_[+2]_71 chr2L:7215805-7215925 0.00032 62_[+2]_50 chr3L:8456578-8456698 0.00032 27_[+2]_85 chr2R:16095522-16095642 0.00032 98_[+2]_14 chr2L:5338748-5338868 0.00032 47_[+2]_65 chr2R:15807047-15807167 0.00032 95_[+2]_17 chrX:19375563-19375683 0.00032 91_[+2]_21 chr3R:31758891-31759011 0.00032 73_[+2]_39 chr2L:2446073-2446193 0.00032 84_[+2]_28 chr2R:15780254-15780374 0.00032 102_[+2]_10 chr2L:14211177-14211297 0.00032 30_[+2]_82 chr3R:19120740-19120860 0.00034 61_[+2]_51 chr3R:9419043-9419163 0.00037 20_[+2]_92 chrX:6720089-6720209 0.00037 37_[+2]_75 chr3R:18999988-19000108 0.00037 103_[+2]_9 chr2R:10212488-10212608 0.00037 102_[+2]_10 chr2L:14310950-14311070 0.00037 37_[+2]_75 chr2L:18496939-18497059 0.00045 78_[+2]_34 chr3R:11437759-11437879 0.00045 59_[+2]_53 chr2R:23611939-23612059 0.00045 43_[+2]_69 chr2R:14073608-14073728 0.00045 90_[+2]_22 chr3L:4840103-4840223 0.00045 97_[+2]_15 chr3R:23971391-23971511 0.00045 11_[+2]_101 chr3R:28545844-28545964 0.00045 67_[+2]_45 chr2L:7491482-7491602 0.00045 106_[+2]_6 chr3R:4974659-4974779 0.00045 68_[+2]_44 chrX:9447684-9447804 0.00045 38_[+2]_74 chr3R:14463568-14463688 0.00045 21_[+2]_91 chr2R:21888942-21889062 0.00045 96_[+2]_16 chr3R:9725028-9725148 0.00045 17_[+2]_95 chr2R:13532024-13532144 0.00045 41_[+2]_71 chr3L:21465418-21465538 0.00045 107_[+2]_5 chr2L:20016570-20016690 0.00049 87_[+2]_25 chr2L:12049338-12049458 0.00049 28_[+2]_84 chr3R:9889107-9889227 0.00054 49_[+2]_63 chr2L:470052-470172 0.00054 38_[+2]_74 chr2L:19937919-19938039 0.00054 51_[+2]_61 chr3R:8155908-8156028 0.00054 60_[+2]_52 chr3L:11637060-11637180 0.00054 54_[+2]_58 chr3R:12701376-12701496 0.00054 40_[+2]_72 chrX:13088681-13088801 0.00055 10_[+2]_102 chr3L:16056357-16056477 0.00065 57_[+2]_55 chrX:17509676-17509796 0.00065 34_[+2]_78 chr2R:15250797-15250917 0.00065 86_[+2]_26 chr3L:16699636-16699756 0.00065 44_[+2]_68 chr2R:18148501-18148621 0.00065 67_[+2]_45 chr2R:15530003-15530123 0.00065 38_[+2]_74 chr2R:18877820-18877940 0.00065 49_[+2]_63 chr3R:21871725-21871845 0.00065 92_[+2]_20 chrX:17743704-17743824 0.00067 11_[+2]_101 chr2R:16820352-16820472 0.00072 89_[+2]_23 chr3R:28552374-28552494 0.00072 78_[+2]_34 chr2L:12457342-12457462 0.00072 69_[+2]_43 chr2R:13033031-13033151 0.00072 88_[+2]_24 chr2R:18436202-18436322 0.00081 80_[+2]_32 chr3R:29138465-29138585 0.00081 40_[+2]_72 chr3L:20494059-20494179 0.00081 46_[+2]_66 chr3L:17489168-17489288 0.00081 18_[+2]_94 chr3L:6519794-6519914 0.00081 78_[+2]_34 chr3R:4973996-4974116 0.00081 39_[+2]_73 chr3R:11660110-11660230 0.00081 85_[+2]_27 chr3L:11317569-11317689 0.00092 41_[+2]_71 chr3R:22066695-22066815 0.00092 6_[+2]_106 chr2R:12441363-12441483 0.00092 64_[+2]_48 chr3R:19467584-19467704 0.001 66_[+2]_46 chr3R:5229550-5229670 0.001 49_[+2]_63 chrX:3967731-3967851 0.0011 44_[+2]_68 chr3L:20276011-20276131 0.0011 15_[+2]_97 chr3L:10741295-10741415 0.0013 92_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RYAAACAH width=8 seqs=132 chrX:768702-768822 ( 22) GCAAACAA 1 chr3L:16429620-16429740 ( 47) GCAAACAA 1 chr2L:9497366-9497486 ( 42) GCAAACAA 1 chr2R:12344114-12344234 ( 75) GCAAACAA 1 chr3L:8379292-8379412 ( 85) GCAAACAA 1 chr2L:1399548-1399668 ( 44) GCAAACAA 1 chr3L:8850066-8850186 ( 37) GCAAACAA 1 chr3R:23867239-23867359 ( 51) GCAAACAA 1 chr2L:6291797-6291917 ( 83) GTAAACAA 1 chr3R:6765012-6765132 ( 56) GCAAACAC 1 chr3R:27986971-27987091 ( 37) GTAAACAA 1 chr3R:23817969-23818089 ( 53) GTAAACAA 1 chr3R:14748782-14748902 ( 95) GTAAACAA 1 chr2R:21611402-21611522 ( 88) GCAAACAC 1 chr2L:19998310-19998430 ( 108) GTAAACAA 1 chr2L:7571917-7572037 ( 95) GTAAACAA 1 chr3L:7858417-7858537 ( 33) GCAAACAC 1 chr3R:19822258-19822378 ( 79) GTAAACAA 1 chr2L:1735278-1735398 ( 101) GTAAACAA 1 chr2R:14031238-14031358 ( 46) GCAAACAC 1 chr2L:18981629-18981749 ( 82) GCAAACAC 1 chr2L:18648078-18648198 ( 51) GCAAACAC 1 chr2R:6811744-6811864 ( 44) GTAAACAA 1 chr2R:7694323-7694443 ( 43) GTAAACAA 1 chr2R:9266584-9266704 ( 31) GTAAACAA 1 chr2L:308304-308424 ( 19) GTAAACAA 1 chr3L:16767863-16767983 ( 58) GTAAACAA 1 chr3L:15071398-15071518 ( 48) GTAAACAA 1 chr3L:2493875-2493995 ( 46) GCAAACAT 1 chr3R:31603862-31603982 ( 27) GCAAACAT 1 chr3L:5785349-5785469 ( 51) GCAAACAT 1 chr3L:8770925-8771045 ( 113) GCAAACAT 1 chr3R:11762560-11762680 ( 61) GTAAACAC 1 chr2R:7655351-7655471 ( 13) GTAAACAC 1 chr2R:9269590-9269710 ( 105) GTAAACAC 1 chrX:16596447-16596567 ( 61) GTAAACAC 1 chr3R:20561021-20561141 ( 90) ACAAACAA 1 chr3L:9372719-9372839 ( 79) ACAAACAA 1 chr3R:9530035-9530155 ( 86) ACAAACAA 1 chr3L:2004977-2005097 ( 81) ACAAACAA 1 chr3R:10030175-10030295 ( 28) ACAAACAA 1 chr3R:8741293-8741413 ( 28) ACAAACAA 1 chr3L:4014260-4014380 ( 26) ACAAACAA 1 chr3R:20648216-20648336 ( 62) ACAAACAA 1 chr3R:23134820-23134940 ( 32) GTAAACAT 1 chr3R:14396718-14396838 ( 99) GTAAACAT 1 chr2L:1400308-1400428 ( 101) GCAAATAA 1 chr2L:14307657-14307777 ( 28) GCAAATAA 1 chr2R:8998021-8998141 ( 5) GCAAATAA 1 chr3R:31070904-31071024 ( 50) GCAAATAA 1 chr3R:10599153-10599273 ( 71) ATAAACAA 1 chr2R:9542594-9542714 ( 50) ACAAACAC 1 chr3L:5992392-5992512 ( 112) ATAAACAA 1 chr2R:7049810-7049930 ( 108) ATAAACAA 1 chr2R:8770987-8771107 ( 22) ACAAACAC 1 chr2R:22384232-22384352 ( 51) ATAAACAA 1 chr2L:19319677-19319797 ( 82) ATAAACAA 1 chr2R:6681374-6681494 ( 34) ATAAACAA 1 chr2L:17255032-17255152 ( 62) ATAAACAA 1 chr2L:8361312-8361432 ( 3) ACAAACAC 1 chr3R:22053367-22053487 ( 84) ATAAACAA 1 chr3R:20263005-20263125 ( 103) GTAAATAA 1 chr3R:27148891-27149011 ( 54) ACAAACAT 1 chr3R:14284456-14284576 ( 42) GTAAATAA 1 chr2L:7215805-7215925 ( 63) GCAAATAC 1 chr3L:8456578-8456698 ( 28) ACAAACAT 1 chr2R:16095522-16095642 ( 99) GCACACAA 1 chr2L:5338748-5338868 ( 48) GCACACAA 1 chr2R:15807047-15807167 ( 96) ACAAACAT 1 chrX:19375563-19375683 ( 92) GCACACAA 1 chr3R:31758891-31759011 ( 74) GTAAATAA 1 chr2L:2446073-2446193 ( 85) GTAAATAA 1 chr2R:15780254-15780374 ( 103) ACAAACAT 1 chr2L:14211177-14211297 ( 31) GTAAATAA 1 chr3R:19120740-19120860 ( 62) ATAAACAC 1 chr3R:9419043-9419163 ( 21) GCAAATAT 1 chrX:6720089-6720209 ( 38) GCAAATAT 1 chr3R:18999988-19000108 ( 104) GCAAATAT 1 chr2R:10212488-10212608 ( 103) GCAAATAT 1 chr2L:14310950-14311070 ( 38) GCAAATAT 1 chr2L:18496939-18497059 ( 79) ATAAACAT 1 chr3R:11437759-11437879 ( 60) GCACACAC 1 chr2R:23611939-23612059 ( 44) GTAAATAC 1 chr2R:14073608-14073728 ( 91) GTAAATAC 1 chr3L:4840103-4840223 ( 98) GCACACAC 1 chr3R:23971391-23971511 ( 12) GCACACAC 1 chr3R:28545844-28545964 ( 68) GCACACAC 1 chr2L:7491482-7491602 ( 107) ATAAACAT 1 chr3R:4974659-4974779 ( 69) GTAAATAC 1 chrX:9447684-9447804 ( 39) ATAAACAT 1 chr3R:14463568-14463688 ( 22) GCACACAC 1 chr2R:21888942-21889062 ( 97) GTAAATAC 1 chr3R:9725028-9725148 ( 18) ATAAACAT 1 chr2R:13532024-13532144 ( 42) GTAAATAC 1 chr3L:21465418-21465538 ( 108) GCACACAC 1 chr2L:20016570-20016690 ( 88) ACAAATAA 1 chr2L:12049338-12049458 ( 29) ACAAATAA 1 chr3R:9889107-9889227 ( 50) GTAAATAT 1 chr2L:470052-470172 ( 39) GTAAATAT 1 chr2L:19937919-19938039 ( 52) GTAAATAT 1 chr3R:8155908-8156028 ( 61) GTAAATAT 1 chr3L:11637060-11637180 ( 55) GTAAATAT 1 chr3R:12701376-12701496 ( 41) GTAAATAT 1 chrX:13088681-13088801 ( 11) GTACACAC 1 chr3L:16056357-16056477 ( 58) ATAAATAA 1 chrX:17509676-17509796 ( 35) GCAAACAG 1 chr2R:15250797-15250917 ( 87) ACACACAA 1 chr3L:16699636-16699756 ( 45) GCAAACAG 1 chr2R:18148501-18148621 ( 68) ATAAATAA 1 chr2R:15530003-15530123 ( 39) ATAAATAA 1 chr2R:18877820-18877940 ( 50) ACACACAA 1 chr3R:21871725-21871845 ( 93) ATAAATAA 1 chrX:17743704-17743824 ( 12) GTACACAT 1 chr2R:16820352-16820472 ( 90) ACAAATAT 1 chr3R:28552374-28552494 ( 79) ACAAATAT 1 chr2L:12457342-12457462 ( 70) ACAAATAT 1 chr2R:13033031-13033151 ( 89) ACAAATAT 1 chr2R:18436202-18436322 ( 81) ACACACAC 1 chr3R:29138465-29138585 ( 41) GTAAACAG 1 chr3L:20494059-20494179 ( 47) ATAAATAC 1 chr3L:17489168-17489288 ( 19) ATAAATAC 1 chr3L:6519794-6519914 ( 79) ATACACAA 1 chr3R:4973996-4974116 ( 40) ACACACAC 1 chr3R:11660110-11660230 ( 86) ATACACAA 1 chr3L:11317569-11317689 ( 42) ACACACAT 1 chr3R:22066695-22066815 ( 7) ATAAATAT 1 chr2R:12441363-12441483 ( 65) ATAAATAT 1 chr3R:19467584-19467704 ( 67) GTACATAC 1 chr3R:5229550-5229670 ( 50) ATACACAT 1 chrX:3967731-3967851 ( 45) GCAAATAG 1 chr3L:20276011-20276131 ( 16) GCAAATAG 1 chr3L:10741295-10741415 ( 93) GTACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.74866 E= 2.9e-036 39 -1369 151 -1369 -1369 127 -1369 80 179 -1369 -1369 -1369 154 -40 -1369 -1369 179 -1369 -1369 -1369 -1369 168 -1369 20 179 -1369 -1369 -1369 66 21 -226 -14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 132 E= 2.9e-036 0.378788 0.000000 0.621212 0.000000 0.000000 0.507576 0.000000 0.492424 1.000000 0.000000 0.000000 0.000000 0.840909 0.159091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.674242 0.000000 0.325758 1.000000 0.000000 0.000000 0.000000 0.454545 0.242424 0.045455 0.257576 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAH MEME-2 regular expression -------------------------------------------------------------------------------- [GA][CT]AAA[CT]A[ATC] -------------------------------------------------------------------------------- Time 13.55 secs. ******************************************************************************** ******************************************************************************** MOTIF CACDCACA MEME-3 width = 8 sites = 27 llr = 239 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:2:a:a pos.-specific C 7:a1a:a: probability G 33:4:::: matrix T :::3:::: bits 2.3 * * * 2.0 * * * 1.8 * **** 1.6 * **** Relative 1.4 * **** Entropy 1.1 *** **** (12.8 bits) 0.9 *** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel CACGCACA consensus GG T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23611939-23612059 91 1.01e-05 CGGCAAGATC CACGCACA CGGCTCGAAA chr3R:28545844-28545964 81 1.01e-05 cacacacaca cacgcaca caTGCGGCAC chr2R:6811744-6811864 73 1.01e-05 cacgcacaca cacgcaca cgcacacaca chr3L:20276011-20276131 78 1.01e-05 AATATTTGTA CACGCACA TGGGCGGCAA chr2R:15530003-15530123 108 1.01e-05 GACCTTGCCC CACGCACA GGCAC chr3L:8850066-8850186 90 1.01e-05 AATCTTCCTT CACGCACA AGTTGCAAGT chr3L:21465418-21465538 97 1.01e-05 AACACCCCCA CACGCACA CTCGCACACA chrX:13088681-13088801 24 3.09e-05 cacacacaca cgcgcaca tacacaGCTT chr3R:9725028-9725148 89 3.09e-05 TATGCACATG CACTCACA CATGCTACCG chr2L:308304-308424 109 3.09e-05 CAGCACCACC CACTCACA GTGG chr2R:18436202-18436322 39 4.15e-05 GTGTTATGGG GACGCACA TAAATCATAG chr2R:18801154-18801274 83 4.15e-05 AGTGATGAGA GACGCACA TGCACTTGGA chr2R:9542594-9542714 59 5.48e-05 cacaaacaca cacacaca TAGCCAGAAC chr2R:16095522-16095642 72 5.48e-05 AAGCCAACAA CACACACA GCGCCACTTA chr2R:8770987-8771107 94 5.48e-05 ATTAAGCAGA CACACACA AGTTTGTGCT chr2L:1399548-1399668 55 6.48e-05 CAAACAATCG CGCTCACA TTTGGGGGCC chr3L:623265-623385 50 8.64e-05 GTTGCCCCAT GACTCACA AGTGGAAAGA chr3L:624771-624891 100 8.64e-05 TCGTTTGAGC GGCGCACA TTCGATCTTT chr2L:16637352-16637472 70 8.64e-05 CTCGACGAGT GACTCACA TCCTCAATTT chr3L:6519794-6519914 10 8.64e-05 CAATGCAAA GACTCACA CGAAACCCAA chr3R:27986971-27987091 80 1.06e-04 GTGAAAGCAG CGCACACA TAAGCCCGCC chr3R:20561021-20561141 32 1.06e-04 ATGCACTTTG CGCACACA aacaacaacg chrX:6733814-6733934 110 1.06e-04 ATTTATGGGC CACCCACA CGG chr2L:16540976-16541096 110 1.06e-04 accgcccaac cacccacA GCT chr2R:9266584-9266704 79 1.30e-04 TCAATAGGTT GGCTCACA AAAACCGAAG chr3L:8770925-8771045 44 1.59e-04 AAACACGTTG GGCACACA GCTTCAGCTT chr2R:20231597-20231717 3 1.72e-04 TT AACGCACA CTTAGCTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23611939-23612059 1e-05 90_[+3]_22 chr3R:28545844-28545964 1e-05 80_[+3]_32 chr2R:6811744-6811864 1e-05 72_[+3]_40 chr3L:20276011-20276131 1e-05 77_[+3]_35 chr2R:15530003-15530123 1e-05 107_[+3]_5 chr3L:8850066-8850186 1e-05 89_[+3]_23 chr3L:21465418-21465538 1e-05 96_[+3]_16 chrX:13088681-13088801 3.1e-05 23_[+3]_89 chr3R:9725028-9725148 3.1e-05 88_[+3]_24 chr2L:308304-308424 3.1e-05 108_[+3]_4 chr2R:18436202-18436322 4.1e-05 38_[+3]_74 chr2R:18801154-18801274 4.1e-05 82_[+3]_30 chr2R:9542594-9542714 5.5e-05 58_[+3]_54 chr2R:16095522-16095642 5.5e-05 71_[+3]_41 chr2R:8770987-8771107 5.5e-05 93_[+3]_19 chr2L:1399548-1399668 6.5e-05 54_[+3]_58 chr3L:623265-623385 8.6e-05 49_[+3]_63 chr3L:624771-624891 8.6e-05 99_[+3]_13 chr2L:16637352-16637472 8.6e-05 69_[+3]_43 chr3L:6519794-6519914 8.6e-05 9_[+3]_103 chr3R:27986971-27987091 0.00011 79_[+3]_33 chr3R:20561021-20561141 0.00011 31_[+3]_81 chrX:6733814-6733934 0.00011 109_[+3]_3 chr2L:16540976-16541096 0.00011 109_[+3]_3 chr2R:9266584-9266704 0.00013 78_[+3]_34 chr3L:8770925-8771045 0.00016 43_[+3]_69 chr2R:20231597-20231717 0.00017 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACDCACA width=8 seqs=27 chr2R:23611939-23612059 ( 91) CACGCACA 1 chr3R:28545844-28545964 ( 81) CACGCACA 1 chr2R:6811744-6811864 ( 73) CACGCACA 1 chr3L:20276011-20276131 ( 78) CACGCACA 1 chr2R:15530003-15530123 ( 108) CACGCACA 1 chr3L:8850066-8850186 ( 90) CACGCACA 1 chr3L:21465418-21465538 ( 97) CACGCACA 1 chrX:13088681-13088801 ( 24) CGCGCACA 1 chr3R:9725028-9725148 ( 89) CACTCACA 1 chr2L:308304-308424 ( 109) CACTCACA 1 chr2R:18436202-18436322 ( 39) GACGCACA 1 chr2R:18801154-18801274 ( 83) GACGCACA 1 chr2R:9542594-9542714 ( 59) CACACACA 1 chr2R:16095522-16095642 ( 72) CACACACA 1 chr2R:8770987-8771107 ( 94) CACACACA 1 chr2L:1399548-1399668 ( 55) CGCTCACA 1 chr3L:623265-623385 ( 50) GACTCACA 1 chr3L:624771-624891 ( 100) GGCGCACA 1 chr2L:16637352-16637472 ( 70) GACTCACA 1 chr3L:6519794-6519914 ( 10) GACTCACA 1 chr3R:27986971-27987091 ( 80) CGCACACA 1 chr3R:20561021-20561141 ( 32) CGCACACA 1 chrX:6733814-6733934 ( 110) CACCCACA 1 chr2L:16540976-16541096 ( 110) CACCCACA 1 chr2R:9266584-9266704 ( 79) GGCTCACA 1 chr3L:8770925-8771045 ( 44) GGCACACA 1 chr2R:20231597-20231717 ( 3) AACGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 1.9e+003 -296 166 44 -1140 136 -1140 25 -1140 -1140 225 -1140 -1140 -38 -150 102 -13 -1140 225 -1140 -1140 179 -1140 -1140 -1140 -1140 225 -1140 -1140 179 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.9e+003 0.037037 0.666667 0.296296 0.000000 0.740741 0.000000 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.074074 0.444444 0.259259 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACDCACA MEME-3 regular expression -------------------------------------------------------------------------------- [CG][AG]C[GTA]CACA -------------------------------------------------------------------------------- Time 19.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTTGTTK MEME-4 width = 8 sites = 39 llr = 324 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::2:::1 probability G :6::a::4 matrix T 94a8:aa5 bits 2.3 * 2.0 * 1.8 * *** 1.6 * *** Relative 1.4 * * *** Entropy 1.1 ******* (12.0 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGTTT consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11531399-11531519 92 1.88e-05 AGCGGGTTAT TGTTGTTG ACGATGTCGA chr3R:9573431-9573551 91 1.88e-05 GACGACATTT TGTTGTTG TTGCTATTTG chr2L:5338748-5338868 13 1.88e-05 TGGCTGAATC TGTTGTTG CTCAAAATTT chr3L:10741295-10741415 49 1.88e-05 TTGTACTTAT TGTTGTTG CAAGCCGGTG chr2L:12498693-12498813 10 1.88e-05 cggcgatgt tgttgttg ttgctgctgc chr2L:18980847-18980967 50 1.88e-05 ttgttgttgt tgttgttg tAGCAGGGCC chr2R:24323393-24323513 52 1.88e-05 Ctgttgttgt tgttgttg ttcctgtttg chr2L:8285354-8285474 47 1.88e-05 GTGTCAACGC TGTTGTTG ATGAGGTTTT chr2R:15780254-15780374 28 1.88e-05 cgaatgctgt tgttgttg tttgtgttgg chr3R:26908854-26908974 70 4.32e-05 GATATGCTAA TGTTGTTT GGGTTTGGGC chr2L:1913169-1913289 28 4.32e-05 ATTAAATTTG TGTTGTTT CTAGCAAAAT chr3L:11637060-11637180 10 4.32e-05 CAAACAAGT TGTTGTTT TCTTTGGGGT chr2R:11062381-11062501 28 4.32e-05 gtttgtggtg tgttgttt gttatttgtt chr2R:16820352-16820472 107 6.76e-05 TTTGTTTGCT TTTTGTTG GCTTTG chr2R:18148501-18148621 21 6.76e-05 TGCTAGCTGG TTTTGTTG ATTAACAAAT chr3R:4973996-4974116 104 6.76e-05 TTTCCTCGCA TTTTGTTG CACCGCTCG chr2L:12195003-12195123 100 6.76e-05 CGTCTTAATC TTTTGTTG ATGCTTGTTT chrX:3967731-3967851 103 9.93e-05 AATTGATTTG TTTTGTTT ACATTCATAC chr3L:14194314-14194434 26 9.93e-05 TGACAGTCTG TTTTGTTT CCCTGTGTTT chr2L:1735278-1735398 9 9.93e-05 TCTGAGAA TTTTGTTT ATTTAGAATG chrX:8887633-8887753 24 9.93e-05 TTTTTCTACT TTTTGTTT TCCAAGTCGC chr2L:14448988-14449108 32 9.93e-05 GGATTTTATG TTTTGTTT TTTATTTGAT chr2L:2989095-2989215 104 9.93e-05 TCGGTTCCCT TTTTGTTT ATTTCGGGC chr3R:11660110-11660230 3 9.93e-05 GT TTTTGTTT ACCTTTCAGG chrX:7227451-7227571 65 1.13e-04 CCGTCGTGAC TGTCGTTG ACTTTCGGGA chr3L:17033447-17033567 37 1.31e-04 GAACTTTCAC TGTCGTTT CTGTTCGGCT chr3R:19467584-19467704 105 1.31e-04 GACGACGACT TGTCGTTT TTCGAGGT chr2L:8361312-8361432 35 1.31e-04 AAACAAACAT TGTCGTTT CATTTATCAA chr2R:5664468-5664588 21 1.50e-04 CGTATCGTTC TGTTGTTC GCTCTGTTCC chr3L:15175436-15175556 85 1.50e-04 ttgttgctgc tgttgttc ttgttgGACG chr3L:16767863-16767983 17 1.50e-04 AATTTTAAAT TGTTGTTC CTATGTAAGT chr2R:15304872-15304992 60 1.82e-04 CCGCTCTGGC CGTTGTTG TCAGAATCTC chr2L:9193899-9194019 67 2.23e-04 TTTGCTTCAC TTTCGTTT TCATCGCGTC chr2R:7655351-7655471 27 2.23e-04 ACACAGCTGT TTTCGTTT ATTAGCTAAT chr2L:9497366-9497486 73 2.23e-04 TTTGTTGATG CGTTGTTT GCTCGTTTGT chr2L:16637352-16637472 113 2.23e-04 TTTACTCCGC TTTCGTTT chr2L:2446073-2446193 67 2.23e-04 ATGCACGATC CGTTGTTT TACAATCGCT chrX:1992008-1992128 31 2.47e-04 TTTCGGTGTT TTTTGTTC GTTTTGTCTA chr3L:4014260-4014380 87 2.78e-04 CCACCTCCCC CTTTGTTG GCTGACTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11531399-11531519 1.9e-05 91_[+4]_21 chr3R:9573431-9573551 1.9e-05 90_[+4]_22 chr2L:5338748-5338868 1.9e-05 12_[+4]_100 chr3L:10741295-10741415 1.9e-05 48_[+4]_64 chr2L:12498693-12498813 1.9e-05 9_[+4]_103 chr2L:18980847-18980967 1.9e-05 49_[+4]_63 chr2R:24323393-24323513 1.9e-05 51_[+4]_61 chr2L:8285354-8285474 1.9e-05 46_[+4]_66 chr2R:15780254-15780374 1.9e-05 27_[+4]_85 chr3R:26908854-26908974 4.3e-05 69_[+4]_43 chr2L:1913169-1913289 4.3e-05 27_[+4]_85 chr3L:11637060-11637180 4.3e-05 9_[+4]_103 chr2R:11062381-11062501 4.3e-05 27_[+4]_85 chr2R:16820352-16820472 6.8e-05 106_[+4]_6 chr2R:18148501-18148621 6.8e-05 20_[+4]_92 chr3R:4973996-4974116 6.8e-05 103_[+4]_9 chr2L:12195003-12195123 6.8e-05 99_[+4]_13 chrX:3967731-3967851 9.9e-05 102_[+4]_10 chr3L:14194314-14194434 9.9e-05 25_[+4]_87 chr2L:1735278-1735398 9.9e-05 8_[+4]_104 chrX:8887633-8887753 9.9e-05 23_[+4]_89 chr2L:14448988-14449108 9.9e-05 31_[+4]_81 chr2L:2989095-2989215 9.9e-05 103_[+4]_9 chr3R:11660110-11660230 9.9e-05 2_[+4]_110 chrX:7227451-7227571 0.00011 64_[+4]_48 chr3L:17033447-17033567 0.00013 36_[+4]_76 chr3R:19467584-19467704 0.00013 104_[+4]_8 chr2L:8361312-8361432 0.00013 34_[+4]_78 chr2R:5664468-5664588 0.00015 20_[+4]_92 chr3L:15175436-15175556 0.00015 84_[+4]_28 chr3L:16767863-16767983 0.00015 16_[+4]_96 chr2R:15304872-15304992 0.00018 59_[+4]_53 chr2L:9193899-9194019 0.00022 66_[+4]_46 chr2R:7655351-7655471 0.00022 26_[+4]_86 chr2L:9497366-9497486 0.00022 72_[+4]_40 chr2L:16637352-16637472 0.00022 112_[+4] chr2L:2446073-2446193 0.00022 66_[+4]_46 chrX:1992008-1992128 0.00025 30_[+4]_82 chr3L:4014260-4014380 0.00028 86_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTTGTTK width=8 seqs=39 chr3L:11531399-11531519 ( 92) TGTTGTTG 1 chr3R:9573431-9573551 ( 91) TGTTGTTG 1 chr2L:5338748-5338868 ( 13) TGTTGTTG 1 chr3L:10741295-10741415 ( 49) TGTTGTTG 1 chr2L:12498693-12498813 ( 10) TGTTGTTG 1 chr2L:18980847-18980967 ( 50) TGTTGTTG 1 chr2R:24323393-24323513 ( 52) TGTTGTTG 1 chr2L:8285354-8285474 ( 47) TGTTGTTG 1 chr2R:15780254-15780374 ( 28) TGTTGTTG 1 chr3R:26908854-26908974 ( 70) TGTTGTTT 1 chr2L:1913169-1913289 ( 28) TGTTGTTT 1 chr3L:11637060-11637180 ( 10) TGTTGTTT 1 chr2R:11062381-11062501 ( 28) TGTTGTTT 1 chr2R:16820352-16820472 ( 107) TTTTGTTG 1 chr2R:18148501-18148621 ( 21) TTTTGTTG 1 chr3R:4973996-4974116 ( 104) TTTTGTTG 1 chr2L:12195003-12195123 ( 100) TTTTGTTG 1 chrX:3967731-3967851 ( 103) TTTTGTTT 1 chr3L:14194314-14194434 ( 26) TTTTGTTT 1 chr2L:1735278-1735398 ( 9) TTTTGTTT 1 chrX:8887633-8887753 ( 24) TTTTGTTT 1 chr2L:14448988-14449108 ( 32) TTTTGTTT 1 chr2L:2989095-2989215 ( 104) TTTTGTTT 1 chr3R:11660110-11660230 ( 3) TTTTGTTT 1 chrX:7227451-7227571 ( 65) TGTCGTTG 1 chr3L:17033447-17033567 ( 37) TGTCGTTT 1 chr3R:19467584-19467704 ( 105) TGTCGTTT 1 chr2L:8361312-8361432 ( 35) TGTCGTTT 1 chr2R:5664468-5664588 ( 21) TGTTGTTC 1 chr3L:15175436-15175556 ( 85) TGTTGTTC 1 chr3L:16767863-16767983 ( 17) TGTTGTTC 1 chr2R:15304872-15304992 ( 60) CGTTGTTG 1 chr2L:9193899-9194019 ( 67) TTTCGTTT 1 chr2R:7655351-7655471 ( 27) TTTCGTTT 1 chr2L:9497366-9497486 ( 73) CGTTGTTT 1 chr2L:16637352-16637472 ( 113) TTTCGTTT 1 chr2L:2446073-2446193 ( 67) CGTTGTTT 1 chrX:1992008-1992128 ( 31) TTTTGTTC 1 chr3L:4014260-4014380 ( 87) CTTTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 5.0e+002 -1193 -103 -1193 166 -1193 -1193 143 53 -1193 -1193 -1193 182 -1193 -23 -1193 153 -1193 -1193 219 -1193 -1193 -1193 -1193 182 -1193 -1193 -1193 182 -1193 -103 91 78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 5.0e+002 0.000000 0.102564 0.000000 0.897436 0.000000 0.000000 0.589744 0.410256 0.000000 0.000000 0.000000 1.000000 0.000000 0.179487 0.000000 0.820513 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.102564 0.410256 0.487179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTGTTK MEME-4 regular expression -------------------------------------------------------------------------------- T[GT]TTGTT[TG] -------------------------------------------------------------------------------- Time 25.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAMAACA MEME-5 width = 8 sites = 28 llr = 247 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a53aa:a pos.-specific C a::5::a: probability G ::3::::: matrix T ::22:::: bits 2.3 * * 2.0 * * 1.8 ** **** 1.6 ** **** Relative 1.4 ** **** Entropy 1.1 ** **** (12.7 bits) 0.9 ** **** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACAACA consensus GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5107051-5107171 82 1.83e-05 TATAAATAGA CAACAACA GCGGCCCTTG chr3L:20494059-20494179 22 1.83e-05 GTTTATGAGA CAACAACA ATGCCATAAT chr3R:20561021-20561141 63 1.83e-05 gcggcagtaa caacaaca acgacaacag chr2R:22384232-22384352 76 1.83e-05 AAGACAAAAA CAACAACA ATCAAGGCAT chr2L:1400308-1400428 2 1.83e-05 T CAACAACA TATACGCAAG chr2L:18648078-18648198 32 1.83e-05 CCGCCAATAG CAACAACA AACAGCTGCA chr2R:7694323-7694443 110 1.83e-05 acaagaacaa caacaaca GGC chr2L:308304-308424 84 1.83e-05 CCACCACCCA CAACAACA ATGCCAGCAG chr2R:17076129-17076249 30 3.22e-05 TGAACGGCAG CAGCAACA TCGACGGCAC chr2R:16095522-16095642 5 3.22e-05 acaa cagcaaca CAGGCCAATG chr3L:20976471-20976591 88 3.22e-05 TAAATGTTGA CAGCAACA TGTTTACCGT chr3L:4014260-4014380 49 3.22e-05 gcagcagcag cagcaaca gcaCGGGGGA chrX:3967731-3967851 71 7.54e-05 TAAATAGAAG CATCAACA ATCTGTTGAC chr3L:3933985-3934105 96 7.54e-05 GAAGCGATCT CAAAAACA TCCAATTCCG chrX:9447684-9447804 65 7.54e-05 AAACAGAAGG CAAAAACA Cagcgagcaa chr3R:27067464-27067584 66 7.54e-05 GTTTGCAGTT CATCAACA TTGCCAAGAC chr2R:6681374-6681494 15 7.54e-05 AGGTGAAATA CAAAAACA CTAATATCAA chr2R:20231597-20231717 111 7.54e-05 CCAGCGGTGG CATCAACA AG chr3L:12804107-12804227 111 1.19e-04 AAAACGAAAA CAATAACA AC chrX:772748-772868 81 1.19e-04 TGCTCGGACT CAATAACA AAGATCGCAT chr3L:16429620-16429740 81 1.19e-04 GTGGCAATCG CAGAAACA AGCTGTGTGC chr2L:19362478-19362598 110 1.19e-04 AAAGAGAAAT CAATAACA AAG chr2L:19937919-19938039 105 1.19e-04 AGGACCAGCC CAGAAACA CTTAAAGA chr2R:18667158-18667278 58 1.19e-04 TTCTGGCCAA CAATAACA ATGAGTTTAC chr3R:9419043-9419163 4 1.44e-04 TGT CATAAACA GTTTGAATGG chr3L:7858417-7858537 70 1.44e-04 ATACCAAACA CATAAACA TGTATGTGTG chr2L:14307657-14307777 112 1.44e-04 GCATACCTCA CATAAACA T chr3R:12250357-12250477 56 1.63e-04 ATGCGTAATG CAGTAACA AGTCAACAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5107051-5107171 1.8e-05 81_[+5]_31 chr3L:20494059-20494179 1.8e-05 21_[+5]_91 chr3R:20561021-20561141 1.8e-05 62_[+5]_50 chr2R:22384232-22384352 1.8e-05 75_[+5]_37 chr2L:1400308-1400428 1.8e-05 1_[+5]_111 chr2L:18648078-18648198 1.8e-05 31_[+5]_81 chr2R:7694323-7694443 1.8e-05 109_[+5]_3 chr2L:308304-308424 1.8e-05 83_[+5]_29 chr2R:17076129-17076249 3.2e-05 29_[+5]_83 chr2R:16095522-16095642 3.2e-05 4_[+5]_108 chr3L:20976471-20976591 3.2e-05 87_[+5]_25 chr3L:4014260-4014380 3.2e-05 48_[+5]_64 chrX:3967731-3967851 7.5e-05 70_[+5]_42 chr3L:3933985-3934105 7.5e-05 95_[+5]_17 chrX:9447684-9447804 7.5e-05 64_[+5]_48 chr3R:27067464-27067584 7.5e-05 65_[+5]_47 chr2R:6681374-6681494 7.5e-05 14_[+5]_98 chr2R:20231597-20231717 7.5e-05 110_[+5]_2 chr3L:12804107-12804227 0.00012 110_[+5]_2 chrX:772748-772868 0.00012 80_[+5]_32 chr3L:16429620-16429740 0.00012 80_[+5]_32 chr2L:19362478-19362598 0.00012 109_[+5]_3 chr2L:19937919-19938039 0.00012 104_[+5]_8 chr2R:18667158-18667278 0.00012 57_[+5]_55 chr3R:9419043-9419163 0.00014 3_[+5]_109 chr3L:7858417-7858537 0.00014 69_[+5]_43 chr2L:14307657-14307777 0.00014 111_[+5]_1 chr3R:12250357-12250477 0.00016 55_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAMAACA width=8 seqs=28 chr3R:5107051-5107171 ( 82) CAACAACA 1 chr3L:20494059-20494179 ( 22) CAACAACA 1 chr3R:20561021-20561141 ( 63) CAACAACA 1 chr2R:22384232-22384352 ( 76) CAACAACA 1 chr2L:1400308-1400428 ( 2) CAACAACA 1 chr2L:18648078-18648198 ( 32) CAACAACA 1 chr2R:7694323-7694443 ( 110) CAACAACA 1 chr2L:308304-308424 ( 84) CAACAACA 1 chr2R:17076129-17076249 ( 30) CAGCAACA 1 chr2R:16095522-16095642 ( 5) CAGCAACA 1 chr3L:20976471-20976591 ( 88) CAGCAACA 1 chr3L:4014260-4014380 ( 49) CAGCAACA 1 chrX:3967731-3967851 ( 71) CATCAACA 1 chr3L:3933985-3934105 ( 96) CAAAAACA 1 chrX:9447684-9447804 ( 65) CAAAAACA 1 chr3R:27067464-27067584 ( 66) CATCAACA 1 chr2R:6681374-6681494 ( 15) CAAAAACA 1 chr2R:20231597-20231717 ( 111) CATCAACA 1 chr3L:12804107-12804227 ( 111) CAATAACA 1 chrX:772748-772868 ( 81) CAATAACA 1 chr3L:16429620-16429740 ( 81) CAGAAACA 1 chr2L:19362478-19362598 ( 110) CAATAACA 1 chr2L:19937919-19938039 ( 105) CAGAAACA 1 chr2R:18667158-18667278 ( 58) CAATAACA 1 chr3R:9419043-9419163 ( 4) CATAAACA 1 chr3L:7858417-7858537 ( 70) CATAAACA 1 chr2L:14307657-14307777 ( 112) CATAAACA 1 chr3R:12250357-12250477 ( 56) CAGTAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2004 E= 2.8e+003 -1145 225 -1145 -1145 179 -1145 -1145 -1145 89 -1145 20 -40 -1 135 -1145 -66 179 -1145 -1145 -1145 179 -1145 -1145 -1145 -1145 225 -1145 -1145 179 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 2.8e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.535714 0.000000 0.250000 0.214286 0.285714 0.535714 0.000000 0.178571 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAMAACA MEME-5 regular expression -------------------------------------------------------------------------------- CA[AGT][CA]AACA -------------------------------------------------------------------------------- Time 30.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2897885-2898005 5.75e-01 120 chr3L:21465418-21465538 4.82e-03 96_[+3(1.01e-05)]_16 chr3R:20648216-20648336 3.09e-03 120 chr3R:15477796-15477916 2.16e-01 120 chr3R:14396718-14396838 1.51e-02 120 chr3R:22053367-22053487 2.25e-03 120 chr2L:14211177-14211297 1.56e-01 120 chr2R:9214309-9214429 7.69e-03 110_[+1(2.44e-05)]_2 chr3L:19239147-19239267 8.95e-01 120 chr2R:20231597-20231717 1.03e-03 72_[+1(7.48e-05)]_30_[+5(7.54e-05)]_\ 2 chr3R:21871725-21871845 8.38e-02 120 chr3R:23867239-23867359 1.80e-02 50_[+2(1.90e-05)]_62 chr3L:15071398-15071518 2.12e-02 47_[+2(5.86e-05)]_65 chr2R:13532024-13532144 1.98e-03 120 chr3L:1420067-1420187 8.65e-02 19_[+1(2.44e-05)]_93 chr3L:4014260-4014380 3.15e-04 48_[+5(3.22e-05)]_64 chr2R:13033031-13033151 2.18e-02 120 chr3R:15664623-15664743 2.68e-02 120 chr3L:8850066-8850186 9.87e-04 36_[+2(1.90e-05)]_45_[+3(1.01e-05)]_\ 23 chr2R:23178995-23179115 2.44e-01 120 chr2L:8361312-8361432 3.63e-04 120 chr2R:12441363-12441483 4.15e-03 36_[+4(9.93e-05)]_[+2(9.60e-05)]_68 chrX:9644947-9645067 2.33e-01 120 chr2L:17255032-17255152 1.15e-03 96_[+1(7.48e-05)]_16 chr3L:13676970-13677090 1.87e-02 120 chr3L:2591140-2591260 1.35e-01 80_[+1(7.48e-05)]_32 chr3R:11660110-11660230 1.17e-02 2_[+4(9.93e-05)]_110 chr2R:15780254-15780374 1.20e-04 24_[+4(1.88e-05)]_1_[+1(9.36e-05)]_\ 26_[+1(2.44e-05)]_45 chr2L:7436029-7436149 8.84e-02 120 chr2L:7165984-7166104 4.01e-01 120 chr2R:6681374-6681494 1.76e-02 14_[+5(7.54e-05)]_98 chr3L:16767863-16767983 3.30e-03 57_[+2(5.86e-05)]_55 chr3R:20586249-20586369 6.87e-01 120 chr2L:308304-308424 1.94e-04 18_[+2(5.86e-05)]_57_[+5(1.83e-05)]_\ 17_[+3(3.09e-05)]_4 chr2R:18667158-18667278 2.35e-02 120 chr3R:8741293-8741413 1.44e-01 120 chr3R:27067464-27067584 2.79e-03 51_[+4(9.93e-05)]_6_[+5(7.54e-05)]_\ 47 chr2L:2989095-2989215 4.14e-03 42_[+1(2.44e-05)]_56_[+1(7.48e-05)]_\ 6 chr2R:18877820-18877940 3.10e-03 120 chr2L:14448988-14449108 2.32e-01 31_[+4(9.93e-05)]_81 chr3R:14415926-14416046 1.01e-01 120 chr2L:8285354-8285474 1.25e-02 18_[+1(7.48e-05)]_20_[+4(1.88e-05)]_\ 66 chr3R:12701376-12701496 2.55e-01 120 chr2L:1399548-1399668 2.32e-03 43_[+2(1.90e-05)]_3_[+3(6.48e-05)]_\ 58 chr3R:26222386-26222506 4.73e-02 120 chr2R:7158983-7159103 9.91e-01 120 chr2R:10287610-10287730 9.05e-02 120 chr3R:9725028-9725148 1.13e-02 88_[+3(3.09e-05)]_24 chr2L:12195003-12195123 3.62e-02 99_[+4(6.76e-05)]_5_[+1(7.48e-05)] chr2R:15530003-15530123 2.26e-02 107_[+3(1.01e-05)]_5 chr2L:12457342-12457462 7.77e-02 120 chr2R:21874166-21874286 1.21e-01 44_[+1(9.36e-05)]_68 chrX:16596447-16596567 6.58e-02 60_[+2(9.60e-05)]_52 chr2R:11062381-11062501 2.90e-03 16_[+1(9.36e-05)]_6_[+1(2.44e-05)]_\ 6_[+1(2.44e-05)]_68 chr3R:22635014-22635134 4.80e-01 120 chr3R:10030175-10030295 4.42e-02 120 chr3L:11637060-11637180 1.15e-02 9_[+4(4.32e-05)]_103 chr2L:18335793-18335913 1.25e-01 120 chr2L:12474464-12474584 3.86e-01 120 chr2L:14310950-14311070 2.45e-01 120 chr2L:2446073-2446193 2.33e-03 46_[+1(2.44e-05)]_66 chr2L:10498219-10498339 6.36e-01 120 chr2R:21888942-21889062 3.76e-01 120 chr2R:7451131-7451251 2.28e-01 120 chr3R:16206323-16206443 5.74e-01 120 chr2R:11206315-11206435 4.25e-02 120 chr3L:20507725-20507845 1.62e-03 93_[+1(2.44e-05)]_19 chr3R:4973996-4974116 5.92e-05 38_[+3(5.48e-05)]_36_[+4(4.32e-05)]_\ 13_[+4(6.76e-05)]_9 chr3L:20276011-20276131 5.87e-04 77_[+3(1.01e-05)]_35 chr2L:13349412-13349532 4.50e-01 120 chr3R:14463568-14463688 4.07e-02 120 chr2R:18148501-18148621 1.13e-02 20_[+4(6.76e-05)]_92 chr2R:20063351-20063471 2.70e-01 120 chr3R:31758891-31759011 1.46e-01 120 chr3L:20976471-20976591 3.76e-02 87_[+5(3.22e-05)]_25 chr3L:2004977-2005097 3.11e-02 120 chr3L:6519794-6519914 4.06e-03 9_[+3(8.64e-05)]_103 chr3L:8379292-8379412 5.57e-03 84_[+2(1.90e-05)]_28 chr3L:17656882-17657002 6.31e-02 120 chr2R:24323393-24323513 1.41e-03 42_[+4(1.88e-05)]_1_[+4(1.88e-05)]_\ 4_[+1(2.44e-05)]_[+1(2.44e-05)]_41 chr3R:22066695-22066815 5.29e-02 120 chr2R:7881720-7881840 4.00e-01 120 chr3R:9530035-9530155 5.25e-02 120 chr3R:22067412-22067532 2.50e-01 120 chrX:19375563-19375683 1.07e-02 120 chr3L:16010375-16010495 3.46e-01 120 chrX:9447684-9447804 6.51e-02 64_[+5(7.54e-05)]_48 chr2L:1913169-1913289 5.18e-02 27_[+4(4.32e-05)]_85 chr3R:4974659-4974779 1.36e-01 120 chr2R:9266584-9266704 7.28e-03 30_[+2(5.86e-05)]_82 chrX:2332472-2332592 1.04e-01 2_[+1(9.36e-05)]_110 chr3R:31070904-31071024 2.50e-01 120 chr2R:7694323-7694443 6.73e-03 42_[+2(5.86e-05)]_44_[+5(3.22e-05)]_\ 4_[+5(1.83e-05)]_6 chr2L:7491482-7491602 1.76e-01 120 chr3L:11317569-11317689 9.55e-03 120 chr3L:16699636-16699756 9.46e-02 120 chr2R:23663213-23663333 2.86e-01 120 chr2L:18980847-18980967 1.08e-01 37_[+4(1.88e-05)]_1_[+4(1.88e-05)]_\ 66 chr3L:15175436-15175556 3.76e-03 38_[+1(7.48e-05)]_26_[+4(1.88e-05)]_\ 40 chr2R:6811744-6811864 1.66e-04 43_[+2(5.86e-05)]_11_[+3(1.01e-05)]_\ 2_[+3(1.01e-05)]_2_[+3(5.48e-05)]_30 chr3R:9028861-9028981 1.82e-01 92_[+1(7.48e-05)]_20 chr3L:17489168-17489288 2.32e-02 120 chr3L:3933985-3934105 3.29e-02 95_[+5(7.54e-05)]_17 chr3R:19120740-19120860 1.19e-01 120 chr3R:28545844-28545964 2.83e-03 68_[+3(5.48e-05)]_4_[+3(1.01e-05)]_\ 32 chr2R:8998021-8998141 1.31e-01 120 chrX:15490683-15490803 6.70e-02 43_[+1(9.36e-05)]_69 chr3L:11512901-11513021 9.55e-01 120 chr2L:7998087-7998207 1.31e-01 120 chr3L:13397960-13398080 1.85e-01 120 chr2L:18648078-18648198 1.25e-03 31_[+5(1.83e-05)]_11_[+2(5.86e-05)]_\ 62 chr3L:8770925-8771045 2.07e-03 112_[+2(7.73e-05)] chr3R:21158727-21158847 4.03e-01 120 chr3L:5947164-5947284 2.94e-01 120 chr3L:3858629-3858749 6.48e-01 120 chr3R:23971391-23971511 1.67e-04 12_[+3(5.48e-05)]_39_[+1(2.44e-05)]_\ 53 chr3R:8155908-8156028 1.95e-01 120 chr2L:16637352-16637472 2.09e-03 69_[+3(8.64e-05)]_43 chr2L:19319677-19319797 4.03e-02 120 chr2R:15250797-15250917 5.08e-02 85_[+3(5.48e-05)]_27 chr2L:10615202-10615322 3.78e-01 120 chr3R:12649749-12649869 3.65e-01 120 chr2R:9269590-9269710 1.26e-02 11_[+1(7.48e-05)]_85_[+2(9.60e-05)]_\ 8 chr2L:7789055-7789175 3.81e-01 120 chr2L:14307657-14307777 1.39e-04 75_[+4(9.93e-05)]_37 chr3R:25524346-25524466 1.99e-01 120 chr3L:3122948-3123068 4.57e-01 120 chr2L:18981629-18981749 6.07e-03 81_[+2(5.86e-05)]_31 chr3R:5229550-5229670 6.29e-02 120 chr2L:16540976-16541096 1.35e-02 2_[+1(4.25e-05)]_110 chr2R:10734474-10734594 2.07e-01 120 chrX:8887633-8887753 5.23e-02 23_[+4(9.93e-05)]_89 chrX:13281416-13281536 3.66e-01 120 chr2L:19937919-19938039 5.58e-03 120 chr3L:624771-624891 1.80e-01 99_[+3(8.64e-05)]_13 chr2R:15807047-15807167 6.67e-02 120 chr3R:28552374-28552494 1.88e-01 120 chr2L:12498693-12498813 1.14e-01 6_[+4(1.88e-05)]_40_[+4(6.76e-05)]_\ 13_[+4(6.76e-05)]_37 chr2R:14031238-14031358 2.13e-02 45_[+2(5.86e-05)]_67 chr2L:1735278-1735398 1.33e-04 11_[+1(7.48e-05)]_5_[+1(9.36e-05)]_\ 68_[+2(5.86e-05)]_12 chr3L:623265-623385 3.00e-01 49_[+3(8.64e-05)]_63 chr3L:16702917-16703037 8.70e-01 120 chr2R:16820352-16820472 1.28e-03 98_[+1(4.25e-05)]_[+4(6.76e-05)]_6 chrX:8857168-8857288 2.43e-01 120 chr2R:10212488-10212608 9.67e-02 120 chrX:13088681-13088801 1.90e-03 13_[+3(5.48e-05)]_2_[+3(3.09e-05)]_\ 89 chr3R:19822258-19822378 1.50e-02 78_[+2(5.86e-05)]_34 chr2L:19362478-19362598 3.81e-03 73_[+1(7.48e-05)]_39 chr3L:9372719-9372839 1.90e-01 120 chr2L:1400308-1400428 3.50e-03 1_[+5(1.83e-05)]_111 chr3L:4840103-4840223 1.58e-02 120 chr3L:11290227-11290347 7.93e-01 120 chrX:17509676-17509796 5.80e-03 60_[+1(2.44e-05)]_52 chr2L:19336842-19336962 5.61e-02 33_[+1(7.48e-05)]_79 chrX:2050748-2050868 5.77e-04 79_[+1(2.44e-05)]_33 chr2R:22384232-22384352 1.91e-03 75_[+5(1.83e-05)]_37 chr3R:17400157-17400277 9.58e-01 120 chr2R:14073608-14073728 2.72e-02 120 chr3R:18999988-19000108 6.83e-02 120 chr3L:7858417-7858537 1.53e-03 32_[+2(5.86e-05)]_80 chrX:6733814-6733934 2.45e-02 120 chr3R:19467584-19467704 2.42e-03 39_[+1(7.48e-05)]_73 chr2R:8770987-8771107 1.60e-03 93_[+3(5.48e-05)]_19 chr3R:20561021-20561141 6.21e-04 62_[+5(1.83e-05)]_50 chr3L:1167534-1167654 5.64e-01 120 chr2R:12344114-12344234 2.25e-04 74_[+2(1.90e-05)]_38 chr3L:4311453-4311573 8.29e-02 4_[+1(2.44e-05)]_108 chrX:17743704-17743824 4.05e-01 120 chr2R:7049810-7049930 1.87e-03 73_[+1(2.44e-05)]_39 chr2L:12049338-12049458 5.68e-01 120 chr3L:137060-137180 2.11e-01 21_[+1(7.48e-05)]_91 chr2L:9497366-9497486 2.19e-05 41_[+2(1.90e-05)]_11_[+1(2.44e-05)]_\ 7_[+1(4.25e-05)]_37 chrX:1992008-1992128 3.14e-01 120 chr2R:18801154-18801274 4.68e-03 82_[+3(4.15e-05)]_30 chr2R:23611939-23612059 3.19e-04 90_[+3(1.01e-05)]_22 chr2L:7571917-7572037 5.46e-02 94_[+2(5.86e-05)]_18 chr3R:16081399-16081519 1.09e-01 120 chr2L:19998310-19998430 5.81e-02 107_[+2(5.86e-05)]_5 chrX:7227451-7227571 9.09e-02 120 chr3R:23220646-23220766 9.12e-02 120 chr3L:4550453-4550573 4.90e-01 120 chr2L:14234826-14234946 4.91e-01 120 chrX:6720089-6720209 3.90e-02 120 chr2R:23378292-23378412 2.04e-01 120 chr3L:10741295-10741415 5.06e-02 48_[+4(1.88e-05)]_64 chr3L:16429620-16429740 4.27e-06 13_[+1(2.44e-05)]_25_[+2(1.90e-05)]_\ 66 chr2L:5338748-5338868 2.59e-03 12_[+4(1.88e-05)]_100 chr2R:16095522-16095642 1.14e-03 4_[+5(3.22e-05)]_53_[+5(1.83e-05)]_\ 47 chr2R:5664468-5664588 4.21e-02 120 chr2L:20016570-20016690 3.47e-01 120 chr3R:26908854-26908974 9.69e-04 69_[+4(4.32e-05)]_27_[+1(2.44e-05)]_\ 8 chr3R:29123636-29123756 5.72e-01 120 chrX:772748-772868 6.55e-02 120 chr3L:5785349-5785469 1.45e-02 50_[+2(7.73e-05)]_62 chr2R:21611402-21611522 7.07e-02 87_[+2(5.86e-05)]_25 chr3R:14748782-14748902 1.14e-02 94_[+2(5.86e-05)]_18 chr2L:470052-470172 2.46e-01 120 chr3L:5992392-5992512 5.31e-02 120 chr3R:24008297-24008417 2.16e-01 75_[+1(9.36e-05)]_37 chr3R:24301583-24301703 8.38e-01 120 chr2R:9542594-9542714 5.96e-03 54_[+3(5.48e-05)]_58 chr2R:17076129-17076249 2.55e-02 29_[+5(3.22e-05)]_20_[+5(3.22e-05)]_\ 55 chr3R:9573431-9573551 4.18e-02 90_[+4(1.88e-05)]_22 chr3L:8456578-8456698 1.24e-01 120 chr3R:23817969-23818089 3.74e-04 43_[+1(2.44e-05)]_1_[+2(5.86e-05)]_\ 60 chr3R:22684168-22684288 2.08e-01 66_[+1(9.36e-05)]_7_[+1(7.48e-05)]_\ 31 chr3L:7858619-7858739 2.88e-01 120 chr3L:4384316-4384436 6.87e-01 120 chrX:17481997-17482117 4.23e-02 120 chr3R:23134820-23134940 3.72e-03 120 chr3L:14194314-14194434 8.98e-02 25_[+4(9.93e-05)]_87 chr2L:7215805-7215925 1.58e-02 120 chr2L:8229317-8229437 2.81e-01 120 chr3L:7962522-7962642 5.95e-01 120 chr2L:3149181-3149301 9.08e-01 120 chr2R:7655351-7655471 4.98e-03 12_[+2(9.60e-05)]_100 chr3R:27986971-27987091 2.26e-03 36_[+2(5.86e-05)]_76 chr3R:9889107-9889227 5.86e-01 120 chr3L:20494059-20494179 1.68e-02 21_[+5(1.83e-05)]_91 chr3R:29138465-29138585 2.25e-01 120 chr2R:15304872-15304992 1.87e-02 7_[+1(4.25e-05)]_105 chrX:768702-768822 8.56e-03 21_[+2(1.90e-05)]_29_[+2(5.86e-05)]_\ 54 chr3L:17033447-17033567 6.02e-02 120 chr3R:6765012-6765132 7.90e-03 55_[+2(5.86e-05)]_57 chr3R:11762560-11762680 1.19e-01 60_[+2(9.60e-05)]_52 chr3R:9215671-9215791 2.43e-01 120 chr3R:31603862-31603982 1.29e-02 26_[+2(7.73e-05)]_86 chr3R:14744460-14744580 4.12e-01 120 chr3R:12250357-12250477 3.04e-01 120 chr2L:16847076-16847196 4.56e-01 120 chr3R:15676823-15676943 1.25e-02 60_[+1(2.44e-05)]_52 chr3L:12804107-12804227 1.37e-02 120 chr2L:6291797-6291917 1.12e-01 82_[+2(5.86e-05)]_30 chr3L:11531399-11531519 1.68e-02 91_[+4(1.88e-05)]_21 chr3R:19182992-19183112 7.94e-02 120 chr3R:10599153-10599273 1.36e-01 120 chr3L:16056357-16056477 7.80e-03 47_[+1(4.25e-05)]_65 chr3R:14284456-14284576 1.79e-01 120 chr3R:5107051-5107171 3.36e-03 81_[+5(1.83e-05)]_31 chr3R:27148891-27149011 5.64e-02 120 chr2L:9193899-9194019 8.76e-02 120 chr3L:2493875-2493995 3.41e-02 45_[+2(7.73e-05)]_67 chr3R:20263005-20263125 5.57e-02 120 chr2R:18436202-18436322 1.18e-02 38_[+3(4.15e-05)]_35_[+3(5.48e-05)]_\ 31 chrX:3967731-3967851 3.64e-04 70_[+5(7.54e-05)]_24_[+4(9.93e-05)]_\ 10 chr2R:22614350-22614470 7.06e-01 120 chr3R:11437759-11437879 2.61e-05 19_[+1(2.44e-05)]_[+1(7.48e-05)]_25_\ [+3(5.48e-05)]_52 chr3R:9419043-9419163 4.05e-02 120 chr2L:18496939-18497059 3.17e-03 120 chr2R:14005868-14005988 7.84e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************