******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd3F.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10396971-10397091 1.0000 120 chr2R:15515769-15515889 1.0000 120 chr3L:12893003-12893123 1.0000 120 chr2L:18481220-18481340 1.0000 120 chr2L:6211712-6211832 1.0000 120 chr3L:15591328-15591448 1.0000 120 chrX:13645196-13645316 1.0000 120 chr3L:11510804-11510924 1.0000 120 chrX:8846851-8846971 1.0000 120 chrX:9987843-9987963 1.0000 120 chr3L:2582062-2582182 1.0000 120 chr3L:16840677-16840797 1.0000 120 chr3L:17791636-17791756 1.0000 120 chr3R:18293013-18293133 1.0000 120 chr3R:17612014-17612134 1.0000 120 chr3R:11201507-11201627 1.0000 120 chr3L:10523043-10523163 1.0000 120 chr2R:15480297-15480417 1.0000 120 chr3R:19011070-19011190 1.0000 120 chr3L:21241733-21241853 1.0000 120 chr3L:4852798-4852918 1.0000 120 chrX:11848645-11848765 1.0000 120 chr3L:11580041-11580161 1.0000 120 chr3L:1258731-1258851 1.0000 120 chr3R:9702155-9702275 1.0000 120 chr2L:2872667-2872787 1.0000 120 chr2L:19415981-19416101 1.0000 120 chr2L:14395193-14395313 1.0000 120 chr3R:24102548-24102668 1.0000 120 chr3R:18438851-18438971 1.0000 120 chr3R:12083676-12083796 1.0000 120 chr3R:21158834-21158954 1.0000 120 chr2L:773163-773283 1.0000 120 chr3L:16146671-16146791 1.0000 120 chr2L:14399405-14399525 1.0000 120 chr3R:24093588-24093708 1.0000 120 chr2L:7443069-7443189 1.0000 120 chr3R:5365123-5365243 1.0000 120 chr3R:17966111-17966231 1.0000 120 chr3L:22276765-22276885 1.0000 120 chr2L:16498257-16498377 1.0000 120 chr3L:20899877-20899997 1.0000 120 chr3R:7334789-7334909 1.0000 120 chr3R:25870530-25870650 1.0000 120 chr2L:2467839-2467959 1.0000 120 chr2R:23615187-23615307 1.0000 120 chr3R:4243263-4243383 1.0000 120 chr2L:9509784-9509904 1.0000 120 chr3L:16289235-16289355 1.0000 120 chrX:17293536-17293656 1.0000 120 chr3L:7757042-7757162 1.0000 120 chr2R:7896331-7896451 1.0000 120 chr3R:14479796-14479916 1.0000 120 chr2R:16581731-16581851 1.0000 120 chr2L:18965745-18965865 1.0000 120 chr3L:14164971-14165091 1.0000 120 chrX:3282087-3282207 1.0000 120 chr3R:7500668-7500788 1.0000 120 chr2R:13261793-13261913 1.0000 120 chr3R:9430497-9430617 1.0000 120 chr3L:7782386-7782506 1.0000 120 chr3L:11785455-11785575 1.0000 120 chr3L:17625168-17625288 1.0000 120 chr2L:18954050-18954170 1.0000 120 chr3R:22632570-22632690 1.0000 120 chr3L:2727157-2727277 1.0000 120 chr2L:11902586-11902706 1.0000 120 chr3L:17411174-17411294 1.0000 120 chr3L:13973657-13973777 1.0000 120 chr2L:19412105-19412225 1.0000 120 chrX:23091924-23092044 1.0000 120 chr3R:21636986-21637106 1.0000 120 chr3R:17385467-17385587 1.0000 120 chrX:11391619-11391739 1.0000 120 chrX:515837-515957 1.0000 120 chrX:3950332-3950452 1.0000 120 chrX:13109863-13109983 1.0000 120 chr2L:11199221-11199341 1.0000 120 chr2R:13909086-13909206 1.0000 120 chr2R:21302832-21302952 1.0000 120 chr2R:23747309-23747429 1.0000 120 chr2R:15846358-15846478 1.0000 120 chr3L:4603560-4603680 1.0000 120 chr3R:9918957-9919077 1.0000 120 chr3L:11257647-11257767 1.0000 120 chr3R:8930207-8930327 1.0000 120 chrX:19306716-19306836 1.0000 120 chr3L:15689616-15689736 1.0000 120 chr3L:3753814-3753934 1.0000 120 chr2L:20951411-20951531 1.0000 120 chr3R:23921834-23921954 1.0000 120 chrX:15475661-15475781 1.0000 120 chr3L:3544395-3544515 1.0000 120 chr2L:1637964-1638084 1.0000 120 chr3L:3932855-3932975 1.0000 120 chr2L:17558167-17558287 1.0000 120 chr3L:11577605-11577725 1.0000 120 chr3R:29139351-29139471 1.0000 120 chr2L:13082321-13082441 1.0000 120 chr2R:18774889-18775009 1.0000 120 chrX:11885489-11885609 1.0000 120 chr3R:21852668-21852788 1.0000 120 chr3R:22400328-22400448 1.0000 120 chr3L:20494919-20495039 1.0000 120 chr3R:12961069-12961189 1.0000 120 chrX:3109020-3109140 1.0000 120 chrX:11440980-11441100 1.0000 120 chr3L:18833392-18833512 1.0000 120 chr3R:18296268-18296388 1.0000 120 chr3R:21865177-21865297 1.0000 120 chr3L:11556864-11556984 1.0000 120 chr3L:94257-94377 1.0000 120 chr2R:9543579-9543699 1.0000 120 chr2R:10079880-10080000 1.0000 120 chr3L:779144-779264 1.0000 120 chr2R:8734560-8734680 1.0000 120 chr3L:8763310-8763430 1.0000 120 chr2L:5972184-5972304 1.0000 120 chr3R:21613029-21613149 1.0000 120 chr2R:22789442-22789562 1.0000 120 chr2L:1913078-1913198 1.0000 120 chrX:19964335-19964455 1.0000 120 chr2L:8938156-8938276 1.0000 120 chr3L:16697237-16697357 1.0000 120 chr2R:19125656-19125776 1.0000 120 chr3L:16885192-16885312 1.0000 120 chr3R:26494408-26494528 1.0000 120 chrX:7691533-7691653 1.0000 120 chr3R:17007423-17007543 1.0000 120 chr2L:13512260-13512380 1.0000 120 chr3L:16160158-16160278 1.0000 120 chrX:18094851-18094971 1.0000 120 chr2R:7749683-7749803 1.0000 120 chr3L:19845130-19845250 1.0000 120 chr3R:13446683-13446803 1.0000 120 chrX:7968428-7968548 1.0000 120 chrX:3399437-3399557 1.0000 120 chr2L:3880266-3880386 1.0000 120 chr2R:11602013-11602133 1.0000 120 chr2R:23567405-23567525 1.0000 120 chr2L:3397655-3397775 1.0000 120 chr3L:13912941-13913061 1.0000 120 chr2L:13882071-13882191 1.0000 120 chr2L:2133124-2133244 1.0000 120 chr3R:19152008-19152128 1.0000 120 chrX:14634904-14635024 1.0000 120 chrX:3019690-3019810 1.0000 120 chr3L:1534253-1534373 1.0000 120 chr3R:24626343-24626463 1.0000 120 chrX:19453337-19453457 1.0000 120 chr3R:23969586-23969706 1.0000 120 chr3L:4025828-4025948 1.0000 120 chr3L:15549084-15549204 1.0000 120 chr3L:13356174-13356294 1.0000 120 chr2R:12218890-12219010 1.0000 120 chr3L:5359540-5359660 1.0000 120 chr2L:2348671-2348791 1.0000 120 chr3R:7217298-7217418 1.0000 120 chrX:3396947-3397067 1.0000 120 chr4:558773-558893 1.0000 120 chr2R:13935214-13935334 1.0000 120 chr3L:9333824-9333944 1.0000 120 chr3R:13441879-13441999 1.0000 120 chr3L:10679959-10680079 1.0000 120 chr3R:26333439-26333559 1.0000 120 chrX:13626037-13626157 1.0000 120 chr3L:2845362-2845482 1.0000 120 chr3L:5819404-5819524 1.0000 120 chr3R:28677012-28677132 1.0000 120 chrX:18004363-18004483 1.0000 120 chr3L:8440858-8440978 1.0000 120 chr3L:3382020-3382140 1.0000 120 chr3L:4522036-4522156 1.0000 120 chr2R:12547725-12547845 1.0000 120 chr3R:25275517-25275637 1.0000 120 chr3L:11528466-11528586 1.0000 120 chr3R:10186170-10186290 1.0000 120 chr2L:18966980-18967100 1.0000 120 chr2R:17848899-17849019 1.0000 120 chr2R:15155124-15155244 1.0000 120 chr2L:9564634-9564754 1.0000 120 chr2L:3228849-3228969 1.0000 120 chr3R:9701466-9701586 1.0000 120 chrX:12547780-12547900 1.0000 120 chr3R:11663617-11663737 1.0000 120 chrX:17330377-17330497 1.0000 120 chr2R:9546521-9546641 1.0000 120 chrX:17696764-17696884 1.0000 120 chr3L:2913435-2913555 1.0000 120 chr3L:3078395-3078515 1.0000 120 chr3L:18782234-18782354 1.0000 120 chr3R:31810348-31810468 1.0000 120 chr2R:6220027-6220147 1.0000 120 chrX:18082870-18082990 1.0000 120 chrX:14213629-14213749 1.0000 120 chr3R:22121410-22121530 1.0000 120 chr2L:19930251-19930371 1.0000 120 chr2L:1837869-1837989 1.0000 120 chr2R:16660206-16660326 1.0000 120 chr2R:10806689-10806809 1.0000 120 chr3L:10893512-10893632 1.0000 120 chr3R:20835016-20835136 1.0000 120 chr2R:9109719-9109839 1.0000 120 chr3R:26106014-26106134 1.0000 120 chr3L:6174023-6174143 1.0000 120 chr3R:23817707-23817827 1.0000 120 chr2L:9570773-9570893 1.0000 120 chr2R:16849587-16849707 1.0000 120 chr2R:22657102-22657222 1.0000 120 chr3L:8951206-8951326 1.0000 120 chr3R:30802264-30802384 1.0000 120 chr2R:8759610-8759730 1.0000 120 chr2L:20911527-20911647 1.0000 120 chr2R:22387704-22387824 1.0000 120 chr3L:5554509-5554629 1.0000 120 chr3R:5746788-5746908 1.0000 120 chr3R:28556539-28556659 1.0000 120 chrX:11379311-11379431 1.0000 120 chr2L:7434934-7435054 1.0000 120 chrX:6663275-6663395 1.0000 120 chr2L:7518891-7519011 1.0000 120 chr3L:20731093-20731213 1.0000 120 chr2L:20807752-20807872 1.0000 120 chr2R:12772773-12772893 1.0000 120 chr3L:3450500-3450620 1.0000 120 chrX:13764498-13764618 1.0000 120 chr3R:22628035-22628155 1.0000 120 chrX:14234091-14234211 1.0000 120 chr3L:16202674-16202794 1.0000 120 chr3L:12270061-12270181 1.0000 120 chrX:8493572-8493692 1.0000 120 chrX:12470646-12470766 1.0000 120 chr2R:18171986-18172106 1.0000 120 chr2R:7748178-7748298 1.0000 120 chr3R:20259451-20259571 1.0000 120 chr2R:23668812-23668932 1.0000 120 chrX:14169226-14169346 1.0000 120 chr3R:15472787-15472907 1.0000 120 chr3R:24010954-24011074 1.0000 120 chr3L:21321991-21322111 1.0000 120 chr2R:11921146-11921266 1.0000 120 chr2L:11736194-11736314 1.0000 120 chr3R:16704383-16704503 1.0000 120 chr3R:10520697-10520817 1.0000 120 chr2L:7871897-7872017 1.0000 120 chr2L:13905413-13905533 1.0000 120 chr3L:19016631-19016751 1.0000 120 chr2R:22062429-22062549 1.0000 120 chr3R:23284360-23284480 1.0000 120 chr2L:7395971-7396091 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fd3F/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd3F.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.342 C 0.161 G 0.159 T 0.339 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.161 G 0.159 T 0.339 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAAACAA MEME-1 width = 8 sites = 15 llr = 153 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9aa:aa pos.-specific C :81::a:: probability G a2:::::: matrix T :::::::: bits 2.7 * * 2.4 * * 2.1 * * 1.9 ** * Relative 1.6 ** ***** Entropy 1.3 ******** (14.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAAACAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23284360-23284480 62 1.93e-05 CTTTGGATAT GCAAACAA ACTACTGATA chr2L:13905413-13905533 97 1.93e-05 ACAAAATAAA GCAAACAA GTGTGTTTCC chr2L:7518891-7519011 80 1.93e-05 AGCGCGTCGA GCAAACAA GAACATATAA chr2R:22387704-22387824 70 1.93e-05 TCTACATCTA GCAAACAA CAATATTTGT chr3L:4025828-4025948 94 1.93e-05 GTTTATCAGC GCAAACAA AAGCCGTCGA chr2L:13082321-13082441 74 1.93e-05 GTGTCAATGT GCAAACAA AGCCGCCAAA chr3L:15689616-15689736 63 1.93e-05 AGAGCGACAA GCAAACAA TTGCCATTTA chr2R:15846358-15846478 9 1.93e-05 CGGGAAAG GCAAACAA ACAATTCATC chrX:515837-515957 90 1.93e-05 TGTGTacaaa gcaaacaa agaaatcaaa chrX:3282087-3282207 89 1.93e-05 TTTTTGAAAC GCAAACAA ATGTCAAGCG chr3R:11201507-11201627 86 1.93e-05 TAGCAGCTGA GCAAACAA AGAACTAGGG chr2R:6220027-6220147 94 3.83e-05 TAAGGTATTC GGAAACAA AATAGTTGTT chr2R:9543579-9543699 47 3.83e-05 CCAAGAAAGA GGAAACAA TGAGCGGAGC chr3L:16840677-16840797 1 3.83e-05 . GGAAACAA TTAAATTCCT chr3L:20494919-20495039 27 4.74e-05 TGTCTTATTT GCCAACAA ATATTTATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23284360-23284480 1.9e-05 61_[+1]_51 chr2L:13905413-13905533 1.9e-05 96_[+1]_16 chr2L:7518891-7519011 1.9e-05 79_[+1]_33 chr2R:22387704-22387824 1.9e-05 69_[+1]_43 chr3L:4025828-4025948 1.9e-05 93_[+1]_19 chr2L:13082321-13082441 1.9e-05 73_[+1]_39 chr3L:15689616-15689736 1.9e-05 62_[+1]_50 chr2R:15846358-15846478 1.9e-05 8_[+1]_104 chrX:515837-515957 1.9e-05 89_[+1]_23 chrX:3282087-3282207 1.9e-05 88_[+1]_24 chr3R:11201507-11201627 1.9e-05 85_[+1]_27 chr2R:6220027-6220147 3.8e-05 93_[+1]_19 chr2R:9543579-9543699 3.8e-05 46_[+1]_66 chr3L:16840677-16840797 3.8e-05 [+1]_112 chr3L:20494919-20495039 4.7e-05 26_[+1]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAA width=8 seqs=15 chr3R:23284360-23284480 ( 62) GCAAACAA 1 chr2L:13905413-13905533 ( 97) GCAAACAA 1 chr2L:7518891-7519011 ( 80) GCAAACAA 1 chr2R:22387704-22387824 ( 70) GCAAACAA 1 chr3L:4025828-4025948 ( 94) GCAAACAA 1 chr2L:13082321-13082441 ( 74) GCAAACAA 1 chr3L:15689616-15689736 ( 63) GCAAACAA 1 chr2R:15846358-15846478 ( 9) GCAAACAA 1 chrX:515837-515957 ( 90) GCAAACAA 1 chrX:3282087-3282207 ( 89) GCAAACAA 1 chr3R:11201507-11201627 ( 86) GCAAACAA 1 chr2R:6220027-6220147 ( 94) GGAAACAA 1 chr2R:9543579-9543699 ( 47) GGAAACAA 1 chr3L:16840677-16840797 ( 1) GGAAACAA 1 chr3L:20494919-20495039 ( 27) GCCAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 3.0e+002 -1055 -1055 265 -1055 -1055 231 33 -1055 145 -127 -1055 -1055 155 -1055 -1055 -1055 155 -1055 -1055 -1055 -1055 264 -1055 -1055 155 -1055 -1055 -1055 155 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.933333 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 regular expression -------------------------------------------------------------------------------- G[CG]AAACAA -------------------------------------------------------------------------------- Time 7.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGSGC MEME-2 width = 8 sites = 2 llr = 28 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:5:a probability G aaa:a5a: matrix T :::::::: bits 2.7 ***** ** 2.4 ***** ** 2.1 ***** ** 1.9 ***** ** Relative 1.6 ******** Entropy 1.3 ******** (20.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCGCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:94257-94377 50 8.43e-07 ATTTTAATGT GGGCGCGC ATTTTGTAGT chr3R:14479796-14479916 104 8.43e-07 AAATAATAAA GGGCGGGC CGTATCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:94257-94377 8.4e-07 49_[+2]_63 chr3R:14479796-14479916 8.4e-07 103_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGSGC width=8 seqs=2 chr3L:94257-94377 ( 50) GGGCGCGC 1 chr3R:14479796-14479916 ( 104) GGGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.7e+003 -765 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 263 -765 -765 -765 -765 265 -765 -765 163 165 -765 -765 -765 265 -765 -765 263 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGSGC MEME-2 regular expression -------------------------------------------------------------------------------- GGGCG[CG]GC -------------------------------------------------------------------------------- Time 13.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGSCRGC MEME-3 width = 8 sites = 13 llr = 132 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C 27:6a:18 probability G 23a4:592 matrix T 5::::::: bits 2.7 * * 2.4 * * * 2.1 * * * 1.9 ** * ** Relative 1.6 **** ** Entropy 1.3 **** ** (14.6 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCGCCGGC consensus CG G A G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9546521-9546641 34 1.78e-06 TTAAAACCAA CCGCCGGC GACAAGCACA chr2L:2133124-2133244 78 1.78e-06 GAAAACATTA GCGCCGGC AGTTGAATGA chr2R:15480297-15480417 80 2.68e-06 TAAATAACGC TCGGCGGC TTGTTGTGCT chr3R:21158834-21158954 12 7.26e-06 CCATTTTGGT TCGCCAGC CCGAGTTGAA chr2R:9543579-9543699 104 1.18e-05 aatggagaaC TGGGCGGC AAGTAGTAG chr2L:1913078-1913198 86 1.64e-05 GTCAACATCC GCGGCAGC TGTTGAATTT chr3L:15591328-15591448 32 1.64e-05 CATAATTTGT GCGGCAGC AGAAAAAACA chr2R:10806689-10806809 9 1.92e-05 GAAGATAG TCGGCGGG AGGGCGTGTC chr3L:1258731-1258851 41 1.92e-05 AACAACTTGT TGGCCAGC AATAAATGGT chr2R:23668812-23668932 1 2.19e-05 . CGGCCAGC GGGACTGACC chr3R:30802264-30802384 30 2.28e-05 AATGCGAATT TGGCCGGG GTTGAGCACA chr3L:11257647-11257767 17 2.74e-05 GGGGGCAAAA CCGCCAGG CATTTTGACA chr2L:9570773-9570893 106 3.30e-05 TGTCGTCGTT TCGCCGCC GAGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9546521-9546641 1.8e-06 33_[+3]_79 chr2L:2133124-2133244 1.8e-06 77_[+3]_35 chr2R:15480297-15480417 2.7e-06 79_[+3]_33 chr3R:21158834-21158954 7.3e-06 11_[+3]_101 chr2R:9543579-9543699 1.2e-05 103_[+3]_9 chr2L:1913078-1913198 1.6e-05 85_[+3]_27 chr3L:15591328-15591448 1.6e-05 31_[+3]_81 chr2R:10806689-10806809 1.9e-05 8_[+3]_104 chr3L:1258731-1258851 1.9e-05 40_[+3]_72 chr2R:23668812-23668932 2.2e-05 [+3]_112 chr3R:30802264-30802384 2.3e-05 29_[+3]_83 chr3L:11257647-11257767 2.7e-05 16_[+3]_96 chr2L:9570773-9570893 3.3e-05 105_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGSCRGC width=8 seqs=13 chr2R:9546521-9546641 ( 34) CCGCCGGC 1 chr2L:2133124-2133244 ( 78) GCGCCGGC 1 chr2R:15480297-15480417 ( 80) TCGGCGGC 1 chr3R:21158834-21158954 ( 12) TCGCCAGC 1 chr2R:9543579-9543699 ( 104) TGGGCGGC 1 chr2L:1913078-1913198 ( 86) GCGGCAGC 1 chr3L:15591328-15591448 ( 32) GCGGCAGC 1 chr2R:10806689-10806809 ( 9) TCGGCGGG 1 chr3L:1258731-1258851 ( 41) TGGCCAGC 1 chr2R:23668812-23668932 ( 1) CGGCCAGC 1 chr3R:30802264-30802384 ( 30) TGGCCGGG 1 chr3L:11257647-11257767 ( 17) CCGCCAGG 1 chr2L:9570773-9570893 ( 106) TCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 2.6e+003 -1035 52 54 67 -1035 211 95 -1035 -1035 -1035 265 -1035 -1035 194 128 -1035 -1035 264 -1035 -1035 43 -1035 176 -1035 -1035 -106 254 -1035 -1035 226 54 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.6e+003 0.000000 0.230769 0.230769 0.538462 0.000000 0.692308 0.307692 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.615385 0.384615 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.769231 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCRGC MEME-3 regular expression -------------------------------------------------------------------------------- [TCG][CG]G[CG]C[GA]G[CG] -------------------------------------------------------------------------------- Time 20.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGGSGG MEME-4 width = 8 sites = 3 llr = 40 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C aa:::3:: probability G :::aa7aa matrix T :::::::: bits 2.7 ** ** ** 2.4 ** ** ** 2.1 ** ** ** 1.9 ** ***** Relative 1.6 ******** Entropy 1.3 ******** (19.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCAGGGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20731093-20731213 70 9.01e-07 AATAATATAA CCAGGGGG AAAACTGTAC chr3L:11257647-11257767 4 9.01e-07 GGT CCAGGGGG CAAAACCGCC chr2L:11902586-11902706 23 1.81e-06 ACAACAAAAG CCAGGCGG TAGCAACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20731093-20731213 9e-07 69_[+4]_43 chr3L:11257647-11257767 9e-07 3_[+4]_109 chr2L:11902586-11902706 1.8e-06 22_[+4]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGGSGG width=8 seqs=3 chr3L:20731093-20731213 ( 70) CCAGGGGG 1 chr3L:11257647-11257767 ( 4) CCAGGGGG 1 chr2L:11902586-11902706 ( 23) CCAGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 4.8e+003 -823 263 -823 -823 -823 263 -823 -823 155 -823 -823 -823 -823 -823 265 -823 -823 -823 265 -823 -823 105 207 -823 -823 -823 265 -823 -823 -823 265 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGSGG MEME-4 regular expression -------------------------------------------------------------------------------- CCAGG[GC]GG -------------------------------------------------------------------------------- Time 26.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TBGCTTTG MEME-5 width = 8 sites = 15 llr = 150 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:a:::: probability G :3a::2:a matrix T a3::a8a: bits 2.7 ** * 2.4 ** * 2.1 ** * 1.9 ** * Relative 1.6 * *** ** Entropy 1.3 * *** ** (14.4 bits) 1.1 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCGCTTTG consensus G G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23284360-23284480 13 1.72e-05 TTATCGGTTA TCGCTTTG GGGGCGACAA chr2L:20911527-20911647 42 1.72e-05 AGCGCTCACT TGGCTTTG TTGTTTGCCT chr2R:16660206-16660326 27 1.72e-05 AAATTGGATA TCGCTTTG GGTTTTAAAA chr2R:9546521-9546641 102 1.72e-05 CGTCTATGCT TCGCTTTG TTTACATATG chrX:19964335-19964455 7 1.72e-05 TAACGA TGGCTTTG AGAGGCGGTT chr3R:29139351-29139471 92 1.72e-05 CATGTGCGTT TCGCTTTG ATATTTCTTT chr3L:16146671-16146791 40 1.72e-05 CTATAACTCA TGGCTTTG AATGTCCAAT chr3L:13912941-13913061 95 2.53e-05 TGGGATCATT TGGCTGTG CTGTTTAATT chr2L:16498257-16498377 109 2.53e-05 TGTTTTTCTC TCGCTGTG CCGA chr3L:1258731-1258851 88 2.53e-05 TATTCCCAAA TGGCTGTG GATAAAATTA chr3L:4025828-4025948 56 4.35e-05 GAGCAGTATT TTGCTTTG CTTGTACATA chr3R:8930207-8930327 91 4.35e-05 CATATTTTTC TTGCTTTG CAAAAATAAT chr3R:21158834-21158954 69 4.35e-05 GAACCCAACT TTGCTTTG CTCGAAAATC chr3R:12083676-12083796 112 4.35e-05 CGTAAACCAT TTGCTTTG C chr2R:15515769-15515889 77 4.35e-05 TTATTTTGTT TTGCTTTG TTGAAGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23284360-23284480 1.7e-05 12_[+5]_100 chr2L:20911527-20911647 1.7e-05 41_[+5]_71 chr2R:16660206-16660326 1.7e-05 26_[+5]_86 chr2R:9546521-9546641 1.7e-05 101_[+5]_11 chrX:19964335-19964455 1.7e-05 6_[+5]_106 chr3R:29139351-29139471 1.7e-05 91_[+5]_21 chr3L:16146671-16146791 1.7e-05 39_[+5]_73 chr3L:13912941-13913061 2.5e-05 94_[+5]_18 chr2L:16498257-16498377 2.5e-05 108_[+5]_4 chr3L:1258731-1258851 2.5e-05 87_[+5]_25 chr3L:4025828-4025948 4.3e-05 55_[+5]_57 chr3R:8930207-8930327 4.3e-05 90_[+5]_22 chr3R:21158834-21158954 4.3e-05 68_[+5]_44 chr3R:12083676-12083796 4.3e-05 111_[+5]_1 chr2R:15515769-15515889 4.3e-05 76_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBGCTTTG width=8 seqs=15 chr3R:23284360-23284480 ( 13) TCGCTTTG 1 chr2L:20911527-20911647 ( 42) TGGCTTTG 1 chr2R:16660206-16660326 ( 27) TCGCTTTG 1 chr2R:9546521-9546641 ( 102) TCGCTTTG 1 chrX:19964335-19964455 ( 7) TGGCTTTG 1 chr3R:29139351-29139471 ( 92) TCGCTTTG 1 chr3L:16146671-16146791 ( 40) TGGCTTTG 1 chr3L:13912941-13913061 ( 95) TGGCTGTG 1 chr2L:16498257-16498377 ( 109) TCGCTGTG 1 chr3L:1258731-1258851 ( 88) TGGCTGTG 1 chr3L:4025828-4025948 ( 56) TTGCTTTG 1 chr3R:8930207-8930327 ( 91) TTGCTTTG 1 chr3R:21158834-21158954 ( 69) TTGCTTTG 1 chr3R:12083676-12083796 ( 112) TTGCTTTG 1 chr2R:15515769-15515889 ( 77) TTGCTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 3.9e+003 -1055 -1055 -1055 156 -1055 105 107 -2 -1055 -1055 265 -1055 -1055 264 -1055 -1055 -1055 -1055 -1055 156 -1055 -1055 33 124 -1055 -1055 -1055 156 -1055 -1055 265 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBGCTTTG MEME-5 regular expression -------------------------------------------------------------------------------- T[CGT]GCT[TG]TG -------------------------------------------------------------------------------- Time 32.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10396971-10397091 6.63e-03 104_[+1(5.64e-05)]_8 chr2R:15515769-15515889 3.83e-01 76_[+5(4.35e-05)]_36 chr3L:12893003-12893123 5.01e-02 120 chr2L:18481220-18481340 6.85e-01 120 chr2L:6211712-6211832 1.60e-01 120 chr3L:15591328-15591448 3.91e-03 31_[+3(1.64e-05)]_81 chrX:13645196-13645316 7.77e-01 120 chr3L:11510804-11510924 1.80e-01 120 chrX:8846851-8846971 1.96e-01 120 chrX:9987843-9987963 6.74e-01 120 chr3L:2582062-2582182 1.57e-01 120 chr3L:16840677-16840797 2.89e-01 [+1(3.83e-05)]_112 chr3L:17791636-17791756 9.28e-01 120 chr3R:18293013-18293133 8.54e-02 120 chr3R:17612014-17612134 9.87e-01 120 chr3R:11201507-11201627 1.55e-01 85_[+1(1.93e-05)]_27 chr3L:10523043-10523163 9.99e-01 120 chr2R:15480297-15480417 7.49e-05 79_[+3(2.68e-06)]_33 chr3R:19011070-19011190 5.93e-01 120 chr3L:21241733-21241853 2.86e-01 120 chr3L:4852798-4852918 5.47e-01 120 chrX:11848645-11848765 2.58e-01 120 chr3L:11580041-11580161 9.75e-01 120 chr3L:1258731-1258851 1.40e-04 40_[+3(1.92e-05)]_39_[+5(2.53e-05)]_\ 25 chr3R:9702155-9702275 2.02e-01 120 chr2L:2872667-2872787 9.67e-01 120 chr2L:19415981-19416101 9.95e-01 120 chr2L:14395193-14395313 3.17e-01 120 chr3R:24102548-24102668 8.72e-01 120 chr3R:18438851-18438971 2.54e-01 120 chr3R:12083676-12083796 1.99e-01 111_[+5(4.35e-05)]_1 chr3R:21158834-21158954 5.90e-04 11_[+3(7.26e-06)]_49_[+5(4.35e-05)]_\ 44 chr2L:773163-773283 9.01e-02 120 chr3L:16146671-16146791 2.14e-01 39_[+5(1.72e-05)]_73 chr2L:14399405-14399525 4.32e-01 120 chr3R:24093588-24093708 6.25e-03 54_[+2(3.38e-05)]_58 chr2L:7443069-7443189 7.41e-01 120 chr3R:5365123-5365243 2.08e-01 120 chr3R:17966111-17966231 7.04e-01 120 chr3L:22276765-22276885 7.97e-02 120 chr2L:16498257-16498377 2.24e-02 108_[+5(2.53e-05)]_4 chr3L:20899877-20899997 5.63e-02 21_[+3(6.06e-05)]_91 chr3R:7334789-7334909 9.79e-01 120 chr3R:25870530-25870650 1.83e-01 120 chr2L:2467839-2467959 7.72e-01 120 chr2R:23615187-23615307 3.56e-01 120 chr3R:4243263-4243383 7.16e-01 120 chr2L:9509784-9509904 3.65e-02 95_[+4(6.65e-05)]_17 chr3L:16289235-16289355 9.19e-01 120 chrX:17293536-17293656 9.28e-01 120 chr3L:7757042-7757162 1.55e-01 120 chr2R:7896331-7896451 9.58e-01 120 chr3R:14479796-14479916 1.26e-05 80_[+5(9.59e-05)]_15_[+2(8.43e-07)]_\ 9 chr2R:16581731-16581851 6.95e-01 120 chr2L:18965745-18965865 7.78e-01 120 chr3L:14164971-14165091 5.71e-03 120 chrX:3282087-3282207 2.98e-04 88_[+1(1.93e-05)]_24 chr3R:7500668-7500788 5.83e-01 120 chr2R:13261793-13261913 9.59e-01 120 chr3R:9430497-9430617 2.67e-01 120 chr3L:7782386-7782506 8.67e-01 120 chr3L:11785455-11785575 9.95e-01 120 chr3L:17625168-17625288 1.10e-01 120 chr2L:18954050-18954170 9.96e-01 120 chr3R:22632570-22632690 4.74e-01 120 chr3L:2727157-2727277 1.00e+00 120 chr2L:11902586-11902706 1.08e-03 22_[+4(1.81e-06)]_90 chr3L:17411174-17411294 5.59e-01 120 chr3L:13973657-13973777 5.60e-01 120 chr2L:19412105-19412225 4.30e-01 120 chrX:23091924-23092044 6.00e-03 22_[+4(3.76e-05)]_90 chr3R:21636986-21637106 9.80e-01 120 chr3R:17385467-17385587 4.90e-01 120 chrX:11391619-11391739 8.65e-01 120 chrX:515837-515957 1.42e-03 89_[+1(1.93e-05)]_23 chrX:3950332-3950452 9.99e-01 120 chrX:13109863-13109983 9.89e-01 120 chr2L:11199221-11199341 4.22e-01 120 chr2R:13909086-13909206 3.49e-01 120 chr2R:21302832-21302952 3.46e-02 120 chr2R:23747309-23747429 8.62e-02 120 chr2R:15846358-15846478 6.70e-02 8_[+1(1.93e-05)]_104 chr3L:4603560-4603680 9.33e-01 120 chr3R:9918957-9919077 2.55e-01 120 chr3L:11257647-11257767 2.88e-04 3_[+4(9.01e-07)]_5_[+3(2.74e-05)]_\ 96 chr3R:8930207-8930327 1.03e-01 90_[+5(4.35e-05)]_22 chrX:19306716-19306836 1.17e-01 120 chr3L:15689616-15689736 2.84e-02 62_[+1(1.93e-05)]_50 chr3L:3753814-3753934 2.53e-01 120 chr2L:20951411-20951531 9.39e-01 120 chr3R:23921834-23921954 7.56e-01 120 chrX:15475661-15475781 6.29e-01 120 chr3L:3544395-3544515 9.11e-01 120 chr2L:1637964-1638084 3.10e-02 120 chr3L:3932855-3932975 6.00e-02 120 chr2L:17558167-17558287 1.00e+00 120 chr3L:11577605-11577725 2.27e-01 120 chr3R:29139351-29139471 4.32e-02 91_[+5(1.72e-05)]_21 chr2L:13082321-13082441 5.86e-03 9_[+1(8.44e-05)]_56_[+1(1.93e-05)]_\ 39 chr2R:18774889-18775009 5.28e-01 120 chrX:11885489-11885609 9.02e-01 120 chr3R:21852668-21852788 8.15e-01 120 chr3R:22400328-22400448 8.81e-01 120 chr3L:20494919-20495039 8.57e-02 26_[+1(4.74e-05)]_86 chr3R:12961069-12961189 5.97e-01 120 chrX:3109020-3109140 3.34e-01 120 chrX:11440980-11441100 5.51e-01 120 chr3L:18833392-18833512 6.28e-01 120 chr3R:18296268-18296388 8.62e-02 120 chr3R:21865177-21865297 2.54e-01 120 chr3L:11556864-11556984 2.55e-01 120 chr3L:94257-94377 7.96e-04 49_[+2(8.43e-07)]_63 chr2R:9543579-9543699 3.42e-05 46_[+1(3.83e-05)]_49_[+3(1.18e-05)]_\ 9 chr2R:10079880-10080000 5.90e-01 120 chr3L:779144-779264 2.13e-01 120 chr2R:8734560-8734680 9.53e-01 120 chr3L:8763310-8763430 9.15e-01 120 chr2L:5972184-5972304 2.84e-02 120 chr3R:21613029-21613149 7.60e-01 120 chr2R:22789442-22789562 9.43e-01 120 chr2L:1913078-1913198 3.20e-02 85_[+3(1.64e-05)]_27 chrX:19964335-19964455 9.22e-03 6_[+5(1.72e-05)]_106 chr2L:8938156-8938276 2.05e-02 106_[+2(1.00e-04)]_6 chr3L:16697237-16697357 3.34e-01 120 chr2R:19125656-19125776 1.59e-01 120 chr3L:16885192-16885312 7.81e-01 120 chr3R:26494408-26494528 9.85e-01 120 chrX:7691533-7691653 1.08e-01 120 chr3R:17007423-17007543 3.12e-01 120 chr2L:13512260-13512380 9.95e-01 120 chr3L:16160158-16160278 9.96e-01 120 chrX:18094851-18094971 4.31e-01 120 chr2R:7749683-7749803 1.41e-01 120 chr3L:19845130-19845250 1.18e-01 111_[+3(6.62e-05)]_1 chr3R:13446683-13446803 9.72e-01 120 chrX:7968428-7968548 3.48e-02 41_[+2(1.00e-04)]_71 chrX:3399437-3399557 1.25e-02 60_[+4(6.65e-05)]_52 chr2L:3880266-3880386 8.57e-01 120 chr2R:11602013-11602133 9.82e-01 120 chr2R:23567405-23567525 4.67e-01 120 chr2L:3397655-3397775 2.02e-02 120 chr3L:13912941-13913061 1.69e-02 43_[+5(5.20e-05)]_43_[+5(2.53e-05)]_\ 18 chr2L:13882071-13882191 3.37e-01 120 chr2L:2133124-2133244 3.73e-04 77_[+3(1.78e-06)]_35 chr3R:19152008-19152128 9.94e-01 120 chrX:14634904-14635024 8.87e-01 120 chrX:3019690-3019810 1.63e-01 120 chr3L:1534253-1534373 5.25e-02 120 chr3R:24626343-24626463 2.83e-01 120 chrX:19453337-19453457 8.61e-01 120 chr3R:23969586-23969706 9.74e-01 120 chr3L:4025828-4025948 7.20e-04 55_[+5(4.35e-05)]_30_[+1(1.93e-05)]_\ 19 chr3L:15549084-15549204 8.40e-01 120 chr3L:13356174-13356294 4.13e-01 120 chr2R:12218890-12219010 8.03e-01 120 chr3L:5359540-5359660 8.07e-01 120 chr2L:2348671-2348791 8.21e-01 120 chr3R:7217298-7217418 5.43e-01 120 chrX:3396947-3397067 1.98e-01 120 chr4:558773-558893 7.53e-01 120 chr2R:13935214-13935334 8.77e-01 120 chr3L:9333824-9333944 1.28e-01 120 chr3R:13441879-13441999 2.16e-02 84_[+4(7.39e-05)]_28 chr3L:10679959-10680079 4.91e-01 120 chr3R:26333439-26333559 9.77e-01 120 chrX:13626037-13626157 2.54e-01 120 chr3L:2845362-2845482 9.24e-01 120 chr3L:5819404-5819524 3.61e-01 120 chr3R:28677012-28677132 3.36e-01 120 chrX:18004363-18004483 8.59e-01 120 chr3L:8440858-8440978 9.44e-01 120 chr3L:3382020-3382140 6.30e-01 120 chr3L:4522036-4522156 1.82e-01 120 chr2R:12547725-12547845 9.20e-01 120 chr3R:25275517-25275637 5.46e-01 120 chr3L:11528466-11528586 3.70e-03 64_[+2(1.00e-04)]_48 chr3R:10186170-10186290 5.46e-01 120 chr2L:18966980-18967100 1.00e+00 120 chr2R:17848899-17849019 9.99e-01 120 chr2R:15155124-15155244 3.71e-01 120 chr2L:9564634-9564754 1.24e-01 120 chr2L:3228849-3228969 2.39e-01 120 chr3R:9701466-9701586 1.44e-01 120 chrX:12547780-12547900 6.42e-01 120 chr3R:11663617-11663737 9.79e-01 120 chrX:17330377-17330497 9.87e-01 120 chr2R:9546521-9546641 7.41e-05 33_[+3(1.78e-06)]_60_[+5(1.72e-05)]_\ 11 chrX:17696764-17696884 8.23e-01 120 chr3L:2913435-2913555 8.88e-01 120 chr3L:3078395-3078515 9.68e-01 120 chr3L:18782234-18782354 5.79e-01 120 chr3R:31810348-31810468 8.36e-01 120 chr2R:6220027-6220147 1.75e-01 93_[+1(3.83e-05)]_19 chrX:18082870-18082990 6.84e-02 120 chrX:14213629-14213749 3.66e-02 120 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chr2L:13905413-13905533 9.74e-02 96_[+1(1.93e-05)]_16 chr3L:19016631-19016751 9.85e-01 120 chr2R:22062429-22062549 4.75e-01 120 chr3R:23284360-23284480 2.36e-05 12_[+5(1.72e-05)]_41_[+1(1.93e-05)]_\ 51 chr2L:7395971-7396091 8.68e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************