******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd102C.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:12730503-12730623 1.0000 120 chr2R:16374246-16374366 1.0000 120 chr3R:12113827-12113947 1.0000 120 chr3L:13615297-13615417 1.0000 120 chr3L:21478057-21478177 1.0000 120 chr2R:9421190-9421310 1.0000 120 chr2R:16479758-16479878 1.0000 120 chr2L:3815026-3815146 1.0000 120 chr2L:18917697-18917817 1.0000 120 chr3L:1438391-1438511 1.0000 120 chrX:9729743-9729863 1.0000 120 chrX:3428254-3428374 1.0000 120 chr3R:10619622-10619742 1.0000 120 chr3R:8704811-8704931 1.0000 120 chr2L:8548267-8548387 1.0000 120 chrX:12119493-12119613 1.0000 120 chr2L:7291477-7291597 1.0000 120 chr2R:23126226-23126346 1.0000 120 chr2L:5458608-5458728 1.0000 120 chr2L:20934847-20934967 1.0000 120 chr2R:10107596-10107716 1.0000 120 chr2R:23196297-23196417 1.0000 120 chr3R:13629187-13629307 1.0000 120 chr3R:8850725-8850845 1.0000 120 chr2L:3834061-3834181 1.0000 120 chr3L:1097642-1097762 1.0000 120 chr2R:6823550-6823670 1.0000 120 chrX:8444428-8444548 1.0000 120 chr3R:26024423-26024543 1.0000 120 chr3L:21455294-21455414 1.0000 120 chr2L:3584455-3584575 1.0000 120 chrX:12276703-12276823 1.0000 120 chr3R:8327010-8327130 1.0000 120 chr3L:14641843-14641963 1.0000 120 chrX:9816164-9816284 1.0000 120 chr3R:4875379-4875499 1.0000 120 chrX:9020241-9020361 1.0000 120 chr3R:24604230-24604350 1.0000 120 chr2L:14434608-14434728 1.0000 120 chrX:10243008-10243128 1.0000 120 chr3R:21539679-21539799 1.0000 120 chr3L:8834599-8834719 1.0000 120 chr3L:12676871-12676991 1.0000 120 chr2R:8653887-8654007 1.0000 120 chr3L:20629262-20629382 1.0000 120 chrX:5358920-5359040 1.0000 120 chr3R:23133682-23133802 1.0000 120 chr3L:13557913-13558033 1.0000 120 chr3L:20667578-20667698 1.0000 120 chr2R:22238554-22238674 1.0000 120 chr3L:4992246-4992366 1.0000 120 chrX:401511-401631 1.0000 120 chrX:2388119-2388239 1.0000 120 chr3R:8932851-8932971 1.0000 120 chr3R:4947882-4948002 1.0000 120 chr2R:9870599-9870719 1.0000 120 chr3R:9219450-9219570 1.0000 120 chr2R:18675607-18675727 1.0000 120 chr2L:6177276-6177396 1.0000 120 chr3R:31706982-31707102 1.0000 120 chr3R:23302327-23302447 1.0000 120 chr3R:9992517-9992637 1.0000 120 chr3R:19246484-19246604 1.0000 120 chr2R:23218159-23218279 1.0000 120 chr3R:16033851-16033971 1.0000 120 chr3L:15315168-15315288 1.0000 120 chr2L:15486642-15486762 1.0000 120 chr3R:15161193-15161313 1.0000 120 chr3L:13622913-13623033 1.0000 120 chr3R:8683381-8683501 1.0000 120 chr3L:17140133-17140253 1.0000 120 chr3L:13259750-13259870 1.0000 120 chr2L:17262307-17262427 1.0000 120 chr3L:15640134-15640254 1.0000 120 chr2R:25098453-25098573 1.0000 120 chrX:17865229-17865349 1.0000 120 chrX:21262579-21262699 1.0000 120 chr4:406462-406582 1.0000 120 chr2L:8842366-8842486 1.0000 120 chr3L:21449432-21449552 1.0000 120 chr2R:9703373-9703493 1.0000 120 chr3R:17646939-17647059 1.0000 120 chr2R:24616120-24616240 1.0000 120 chr2R:11547214-11547334 1.0000 120 chr2R:13032597-13032717 1.0000 120 chr2R:14802080-14802200 1.0000 120 chrX:7169586-7169706 1.0000 120 chr3L:11242360-11242480 1.0000 120 chr3L:22520148-22520268 1.0000 120 chr3R:29550085-29550205 1.0000 120 chr2L:590028-590148 1.0000 120 chr3L:12677691-12677811 1.0000 120 chr3R:22161762-22161882 1.0000 120 chr2L:7278023-7278143 1.0000 120 chr3L:22391901-22392021 1.0000 120 chr2R:12776534-12776654 1.0000 120 chr2R:11812293-11812413 1.0000 120 chr3R:7021211-7021331 1.0000 120 chr2L:3549043-3549163 1.0000 120 chrX:3394295-3394415 1.0000 120 chrX:3354564-3354684 1.0000 120 chrX:4574636-4574756 1.0000 120 chr2L:2999794-2999914 1.0000 120 chr2R:25211845-25211965 1.0000 120 chr2L:19218317-19218437 1.0000 120 chrX:12217076-12217196 1.0000 120 chrX:3832375-3832495 1.0000 120 chr2R:21847001-21847121 1.0000 120 chr3L:15760117-15760237 1.0000 120 chr2R:19264872-19264992 1.0000 120 chr2R:13565690-13565810 1.0000 120 chr2L:221754-221874 1.0000 120 chrX:9248177-9248297 1.0000 120 chr2L:19341215-19341335 1.0000 120 chr2R:14312303-14312423 1.0000 120 chrX:9689300-9689420 1.0000 120 chr3L:15732389-15732509 1.0000 120 chr2L:11486215-11486335 1.0000 120 chr3R:10169222-10169342 1.0000 120 chr2L:18809062-18809182 1.0000 120 chr2L:21618595-21618715 1.0000 120 chr2L:3078929-3079049 1.0000 120 chr2L:15466057-15466177 1.0000 120 chr2R:21205864-21205984 1.0000 120 chr3R:29290459-29290579 1.0000 120 chr3L:12656169-12656289 1.0000 120 chr2R:11084960-11085080 1.0000 120 chr3L:11004145-11004265 1.0000 120 chr3R:31070834-31070954 1.0000 120 chr3L:1358448-1358568 1.0000 120 chr3R:23039278-23039398 1.0000 120 chr2L:7592955-7593075 1.0000 120 chr3L:15320299-15320419 1.0000 120 chr3R:6949434-6949554 1.0000 120 chr2R:20888872-20888992 1.0000 120 chr3L:20623708-20623828 1.0000 120 chr2L:21035855-21035975 1.0000 120 chr3L:14976127-14976247 1.0000 120 chrX:2383235-2383355 1.0000 120 chr3R:5327993-5328113 1.0000 120 chr3R:21535494-21535614 1.0000 120 chr3R:8182910-8183030 1.0000 120 chr3R:29548897-29549017 1.0000 120 chr2L:18934749-18934869 1.0000 120 chr3R:19790949-19791069 1.0000 120 chr3L:15232660-15232780 1.0000 120 chrX:3504428-3504548 1.0000 120 chr3L:14108337-14108457 1.0000 120 chr3L:18404443-18404563 1.0000 120 chr4:487756-487876 1.0000 120 chr3L:9021166-9021286 1.0000 120 chr2R:19569787-19569907 1.0000 120 chr2R:12458252-12458372 1.0000 120 chr2L:11455892-11456012 1.0000 120 chrX:4459792-4459912 1.0000 120 chr3R:16630703-16630823 1.0000 120 chr2L:12392540-12392660 1.0000 120 chrX:5596947-5597067 1.0000 120 chr2L:8276393-8276513 1.0000 120 chr3L:14988345-14988465 1.0000 120 chr3R:10599053-10599173 1.0000 120 chr3L:20687520-20687640 1.0000 120 chr2L:15324243-15324363 1.0000 120 chr2L:15731747-15731867 1.0000 120 chr3R:17816472-17816592 1.0000 120 chr3L:14603367-14603487 1.0000 120 chr3L:9042215-9042335 1.0000 120 chr3R:26029623-26029743 1.0000 120 chr2L:3819065-3819185 1.0000 120 chr3R:5114163-5114283 1.0000 120 chrX:14629523-14629643 1.0000 120 chr3L:15330204-15330324 1.0000 120 chr3L:15689592-15689712 1.0000 120 chr3L:14953112-14953232 1.0000 120 chr2L:18616177-18616297 1.0000 120 chr2R:8177293-8177413 1.0000 120 chr3L:20507708-20507828 1.0000 120 chrX:5604313-5604433 1.0000 120 chrX:3359000-3359120 1.0000 120 chr2R:6603099-6603219 1.0000 120 chrX:8665657-8665777 1.0000 120 chr3R:19339367-19339487 1.0000 120 chr2R:9660264-9660384 1.0000 120 chr2R:14982009-14982129 1.0000 120 chr3R:25594351-25594471 1.0000 120 chr2L:5658517-5658637 1.0000 120 chr3L:1549213-1549333 1.0000 120 chr3R:6664498-6664618 1.0000 120 chr3R:6663055-6663175 1.0000 120 chr2L:8165937-8166057 1.0000 120 chr3R:25172562-25172682 1.0000 120 chr2L:3570701-3570821 1.0000 120 chr3R:13990163-13990283 1.0000 120 chr3R:23134837-23134957 1.0000 120 chr3L:13049858-13049978 1.0000 120 chr2L:18895209-18895329 1.0000 120 chr3L:17419515-17419635 1.0000 120 chr2R:22158081-22158201 1.0000 120 chr2R:17084247-17084367 1.0000 120 chr2R:20542594-20542714 1.0000 120 chr2L:16231335-16231455 1.0000 120 chr3L:12453662-12453782 1.0000 120 chr3L:22162642-22162762 1.0000 120 chr3R:4861256-4861376 1.0000 120 chr3R:6845769-6845889 1.0000 120 chr2R:13196341-13196461 1.0000 120 chr2L:19285645-19285765 1.0000 120 chr2L:2967026-2967146 1.0000 120 chr2R:14787848-14787968 1.0000 120 chrX:18946984-18947104 1.0000 120 chr3R:24467424-24467544 1.0000 120 chr3R:31549230-31549350 1.0000 120 chr2L:19219560-19219680 1.0000 120 chr2L:12076097-12076217 1.0000 120 chr3L:20918817-20918937 1.0000 120 chr2L:20968910-20969030 1.0000 120 chrX:19323151-19323271 1.0000 120 chrX:7579958-7580078 1.0000 120 chr3L:12725921-12726041 1.0000 120 chr2L:518224-518344 1.0000 120 chrX:5564065-5564185 1.0000 120 chr3R:28886930-28887050 1.0000 120 chrX:2050761-2050881 1.0000 120 chr2L:7292105-7292225 1.0000 120 chr3R:8197233-8197353 1.0000 120 chr2L:12588988-12589108 1.0000 120 chr3L:14447073-14447193 1.0000 120 chr3L:2493953-2494073 1.0000 120 chr2L:7298886-7299006 1.0000 120 chr3R:26539286-26539406 1.0000 120 chr3R:30812089-30812209 1.0000 120 chr4:488812-488932 1.0000 120 chr3L:19184236-19184356 1.0000 120 chrX:4423916-4424036 1.0000 120 chrX:13633402-13633522 1.0000 120 chr3L:15794439-15794559 1.0000 120 chr3R:15587627-15587747 1.0000 120 chr2R:14314452-14314572 1.0000 120 chrX:19783536-19783656 1.0000 120 chrX:12939946-12940066 1.0000 120 chrX:407566-407686 1.0000 120 chr2R:12741188-12741308 1.0000 120 chr3R:6863837-6863957 1.0000 120 chr2R:11403175-11403295 1.0000 120 chr3L:5994282-5994402 1.0000 120 chr3R:29696488-29696608 1.0000 120 chr2L:2461762-2461882 1.0000 120 chr2L:6826487-6826607 1.0000 120 chr2L:20935508-20935628 1.0000 120 chr2R:18202728-18202848 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_fd102C/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/fd102C.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.197 G 0.194 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.197 G 0.194 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYAAAYAW MEME-1 width = 8 sites = 126 llr = 885 E-value = 2.1e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:aaa:a4 pos.-specific C 16:::5:2 probability G 6::::::: matrix T :4:::5:4 bits 2.4 2.1 1.9 1.7 *** * Relative 1.4 *** * Entropy 1.2 **** * (10.1 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GCAAATAA consensus AT C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11403175-11403295 84 2.05e-05 AAAGTAGAAG GCAAACAA ACTGGATGTT chr2R:12741188-12741308 50 2.05e-05 CGAAATTCTG GCAAACAA CAGACGGAGA chr3L:14447073-14447193 74 2.05e-05 CAAGTGACGA GCAAACAA CTCAACTTCA chr2L:12076097-12076217 8 2.05e-05 CCAAGCG GCAAACAA CGCCCAATTG chr3R:6664498-6664618 44 2.05e-05 CCGCTCGCGG GCAAACAA ACTAAGCAAA chrX:5604313-5604433 65 2.05e-05 GCTGTTGCTT GCAAACAA TTTTGTTGCT chr3L:15689592-15689712 87 2.05e-05 AGAGCGACAA GCAAACAA TTGCCATTTA chr3R:17816472-17816592 80 2.05e-05 CAGGAGCAGT GCaaacaa aaggcaaagt chr3R:31070834-31070954 22 2.05e-05 CGACCGCAGT GCAAACAA GCAACTGCAT chr2R:21205864-21205984 110 2.05e-05 AATAACCCAA GCAAACAA ACT chr3R:15161193-15161313 12 2.05e-05 CAGGATCTGA GCAAACAA TAACAATACC chr3L:8834599-8834719 110 2.05e-05 GGAAGTAAGT GCAAACAA TAA chr3L:14641843-14641963 12 2.05e-05 CAATTACAAC GCAAACAA CGAAATCCCC chr2L:3584455-3584575 90 2.05e-05 TCTCGAGCGG GCAAACAA CAAATGAGTT chr2L:5458608-5458728 100 2.05e-05 CGTTCTCAGT GCAAACAA CTGAAAATAA chr2R:23126226-23126346 36 2.05e-05 CAATTTGAGG GCAAACAA CAGGCAGCAG chrX:12119493-12119613 30 2.05e-05 ATATGTACTC GCAAACAA GGACGAGTGC chrX:9729743-9729863 74 2.05e-05 aaaccaacaa gcaaacaa acaaacataa chr3R:29290459-29290579 87 4.07e-05 CTAAGTCTGT GCAAACAT TTGAAAGTTT chr3L:13259750-13259870 40 4.07e-05 TAAGCCCTTG GCAAACAT GACAAAAGAA chrX:4423916-4424036 83 7.22e-05 ACCATGTTAA GCAAATAA ACAagagagt chr3R:29548897-29549017 86 7.22e-05 CATTTGCCAT GCAAATAA GCCCGGCTTC chr2L:15466057-15466177 14 7.22e-05 ATGATATTTA GCAAATAA GATGCGTTGT chr2R:25098453-25098573 107 7.22e-05 CACACACAAA GCAAATAA ATAAAG chr3L:4992246-4992366 20 7.22e-05 GGTGCCAATA GCAAATAA GTAAATATTT chr2L:8548267-8548387 35 7.22e-05 GAATTTTTGG GCAAATAA GAAAGCAAAG chr3L:19184236-19184356 36 1.16e-04 TGCATTCGGG GCAAATAT AAATATTTAT chr3R:31549230-31549350 19 1.16e-04 ATTGTTGTAG GCAAATAT TTAACTAATT chr2R:14787848-14787968 69 1.16e-04 GGGACATAAT GCAAATAT TGACAATGTC chr3R:13990163-13990283 28 1.16e-04 CTATAGCTGG GCAAACAC GGCTTATAGT chr2L:11455892-11456012 55 1.16e-04 GAAGTGATAT GCAAATAT TGACACCCAT chr3L:12656169-12656289 45 1.16e-04 GTAATTGTAG GCAAATAT TTGTGTTTGC chr2R:13565690-13565810 89 1.16e-04 AAAGCCCTCC Gcaaacac tcactcacac chr2R:21847001-21847121 18 1.16e-04 ATGCCGCAGA GCAAACAC AAACAGAATG chr2L:2999794-2999914 100 1.16e-04 TCGCGCATGC GCAAATAT TTGTGATTTG chr3L:11242360-11242480 32 1.16e-04 TTAATATTCT GCAAATAT ATTTACACAA chr3L:13622913-13623033 83 1.16e-04 TTTGCACTGG GCAAATAT ACCTCTATCT chr3L:15315168-15315288 85 1.16e-04 TTTTAATTCT GCAAATAT ATGTAAGAGT chr3R:9219450-9219570 37 1.16e-04 TACAAATAAA GCAAATAT TTGAAACATA chrX:12276703-12276823 30 1.16e-04 acaAGCGTGC GCAAATAT TCGTTCAGTG chr2R:10107596-10107716 62 1.16e-04 TTTTGACTAT GCAAATAT TATTCAGTAA chr3R:8704811-8704931 42 1.16e-04 AATAAAAAAT GCAAATAT GTGTGGCGGT chr2R:16479758-16479878 53 1.16e-04 TTTACAACTG GCAAATAT TGACCCGCAT chr3L:11004145-11004265 59 1.37e-04 TTGCGCTTGC GCAAATAC TAATAAAATT chr2L:221754-221874 49 1.37e-04 TGTTGCCTCT GCAAATAC ATTATTCCAT chr2L:20934847-20934967 72 1.37e-04 CTATCAATAA GCAAATAC AAATTAACCA chr2L:6826487-6826607 70 1.68e-04 CGACCGATAA GTAAACAA GAGCCAACCG chr3R:26539286-26539406 53 1.68e-04 AAATAAACAA GTAAACAA GCCAGCAGCA chr2L:16231335-16231455 40 1.68e-04 CATTCAAAAT GTAAACAA GGAGAGTGAC chr2R:8177293-8177413 91 1.68e-04 AATAATGAAA GTAAACAA CAAGTGATTG chr2R:19264872-19264992 66 1.68e-04 CGTGATGTCT GTAAACAA CGAGGACAAA chr3R:23302327-23302447 34 1.68e-04 AACCTCTCAG GTAAACAA CTACAACGAG chr3R:12113827-12113947 24 1.68e-04 TCTGTAAACA GTAAACAA GGCCAACTGA chr3L:12730503-12730623 42 1.68e-04 ATTATTCCAA GTAAACAA AGATTTATAT chr3R:23134837-23134957 15 1.99e-04 GGTGCGTAAG GTAAACAT TTACGTATAC chr3R:19246484-19246604 73 1.99e-04 CTCAATGTTG GTAAACAT CGCCCAGCTG chr2R:9421190-9421310 57 1.99e-04 TGTTTGGACA GTAAACAT GAGTTTGGCT chr3R:4861256-4861376 101 2.31e-04 Gaaaaaacaa acaaacaa gcaaacaggc chr3L:15732389-15732509 89 2.31e-04 GACTCTGTTG ACAAACAA AATAAACAAG chrX:3832375-3832495 80 2.31e-04 aaacaggcag acaaacaa acaaacggtg chrX:401511-401631 6 2.31e-04 CAAAC ACAAACAA GGCCTTTTGA chr3L:13557913-13558033 78 2.31e-04 AATGCAACAA ACAAACAA GGAGCAAACG chr2L:3834061-3834181 62 2.31e-04 GATCCGTTGG ACAAACAA GCTAATCCTG chrX:19323151-19323271 44 3.12e-04 AAATGTATGC ACAAACAT ATGCAAATGA chr2L:18895209-18895329 27 3.12e-04 TTCCATGTTC ACAAACAT TAGATGATTT chr3R:5114163-5114283 32 3.12e-04 ATTGTGCGGC ACAAACAT CTTATGTACA chr2R:24616120-24616240 104 3.12e-04 ATGTTGAAAG GTAAATAA GGGCGGGCA chr2R:23196297-23196417 110 3.12e-04 GTAAAAGCAA GTAAATAA GTT chr3R:10619622-10619742 91 3.12e-04 TTCCGCCAAA GTAAATAA CAAATATTAT chr2L:20935508-20935628 46 3.79e-04 GAGTAATAAG GTAAATAT ATGCTCAGCT chr3L:17419515-17419635 61 3.79e-04 ACGCAAACAG GTAAACAC TCTATTTAGA chr3L:9042215-9042335 67 3.79e-04 CACGGCCTAT GTAAATAT TTGCTCCTGT chr3L:15760117-15760237 54 3.79e-04 ACTAACCAGG GTAAATAT TTATTTTTTA chr2L:19218317-19218437 5 3.79e-04 CTGT GTAAATAT CCTGTCTCCA chrX:3354564-3354684 15 3.79e-04 AGCTGCCACT GTAAATAT TTACATGTGC chr3L:12677691-12677811 22 3.79e-04 CGAGTCCTAA GTAAATAT TTGCACAGAG chr3L:22520148-22520268 43 3.79e-04 TGTACTTTGT GTAAATAT GTGCTCAACA chrX:7169586-7169706 56 3.79e-04 AAAACGTTTA GTAAATAT GTGCTTTAGG chr3R:16033851-16033971 17 3.79e-04 TTAATATTAA GTAAATAT TGAGATCAAA chr3R:8327010-8327130 61 3.79e-04 TGTCTGATCG GTAAATAT TTGCCCATGG chr3R:8850725-8850845 100 3.79e-04 TATGCAAAAA GTAAACAC TCTGAAAATG chr3R:21535494-21535614 96 4.29e-04 TGGTAATCTT ACAAATAA AGTACAAAGT chr2L:17262307-17262427 15 4.29e-04 GCCCCGTCTT ACAAATAA CCCTAGCAAA chr2R:14314452-14314572 66 4.99e-04 AAATAACTCA ACAAATAT TTACGGACGC chrX:5564065-5564185 15 4.99e-04 TGTGTTTCCA ACAAATAT GCTACAAAAT chr2L:8276393-8276513 66 4.99e-04 TGGGCAATAT ACAAATAT CCACAAGAAT chr3R:5327993-5328113 56 4.99e-04 AGCAGTGAAA ACAAATAT GCATCTTCTA chr3R:23039278-23039398 60 4.99e-04 TATTTACACA ACAAACAC TTGTAATTAC chr2L:15486642-15486762 88 4.99e-04 TTTGTTTAAA ACAAACAC CGTTTTGTTT chr2R:8653887-8654007 112 4.99e-04 AAAAACAAAC ACAAACAC A chr3L:1438391-1438511 81 4.99e-04 CCTCCTTCCC ACAAATAT ACTCATATAT chr3L:21478057-21478177 72 4.99e-04 CACAGGGAAA ACAAACAC GCACATATTT chr3R:30812089-30812209 70 5.30e-04 CAGTTCTTGA GTAAATAC TAAACCACCA chr3R:8182910-8183030 30 5.30e-04 GTTTATGTAT GTAAATAC CTGTGGTCAT chrX:9248177-9248297 48 5.30e-04 AACTTACTGA GTAAATAC AGTAAACTGT chr2L:3549043-3549163 33 5.30e-04 CGCACAATTG GTAAATAC CGTGGGTGAA chrX:19783536-19783656 14 5.62e-04 CAAATGACCG ACAAATAC ACCGCCGTGC chr2L:8165937-8166057 50 6.33e-04 GTAAACCACA CCAAACAA ACGGCTTGGC chr2R:14312303-14312423 4 6.33e-04 TAA ATAAACAA GAATTTTGCA chr3R:13629187-13629307 4 6.33e-04 TAG ATAAACAA TATTGAAACT chr3L:1549213-1549333 90 7.02e-04 GCCACGATGA ATAAACAT GGGAAATCGT chr2L:7278023-7278143 112 7.02e-04 TTCTATTTGT CCAAACAT T chrX:3428254-3428374 16 7.02e-04 TCAAATATTT ATAAACAT ACTTCGTTCT chr2R:19569787-19569907 41 8.23e-04 TGTCATAAAA ATAAATAA CCCAAAGACA chr3L:15320299-15320419 56 8.23e-04 TATGCTCTAA ATAAATAA ACTATTCTCC chr2L:19341215-19341335 55 8.23e-04 AACATTTTAT ATAAATAA ACACGGACGA chrX:3394295-3394415 30 8.23e-04 TGTGACTTTA ATAAATAA AGATTCAATT chr3L:21449432-21449552 113 8.23e-04 GTCATTTTGT CCAAATAA chrX:17865229-17865349 79 8.23e-04 GCAACTCTGC CCAAATAA CAATTGGTTA chrX:18946984-18947104 19 9.75e-04 GTATTGTGTA ATAAATAT GAATCAATTA chr3R:6845769-6845889 92 9.75e-04 AAAAATAGTC ATAAATAT TATTCCTCTT chr3L:1358448-1358568 10 9.75e-04 GTTCCTTCT ATAAATAT ACATTTCTAG chr2R:11084960-11085080 25 9.75e-04 TTTTCATTAG CCAAACAC AAATTGAGGC chr2L:3078929-3079049 47 9.75e-04 AACAAGTTAG CCAAATAT TGTGGTGTAC chr2L:21618595-21618715 46 9.75e-04 CGTAGTTTAT CCAAATAT TTATGTACTA chr3L:22391901-22392021 75 9.75e-04 AAGAAGTAAA ATAAATAT TGACATTGCG chr3R:22161762-22161882 50 9.75e-04 AGGCCATAAT CCAAATAT GTACCCCAAA chr3L:15640134-15640254 34 9.75e-04 TCTAAGCCGA ATAAATAT TTGATAAGGC chr3R:21539679-21539799 100 9.75e-04 AGTCGCGTGT CCAAATAT TGTTGTTTGT chr3L:21455294-21455414 2 9.75e-04 G ATAAACAC GAAGAAAAAT chr3L:1097642-1097762 84 9.75e-04 GAAAGCGACA ATAAACAC GGAACACGGA chr2R:16374246-16374366 33 9.75e-04 TTGATCTTCT CCAAACAC GACTGTTGAC chrX:13633402-13633522 62 9.95e-04 CATACCGGTA GCAAATAG AACACCCAAA chr3L:18404443-18404563 9 1.06e-03 TGAAAGAG ATAAATAC AGTGGAAAAA chr3L:20629262-20629382 65 1.20e-03 AATCATGAAT GTAAACAG CAATTGTCAT chr3R:23133682-23133802 24 1.29e-03 TGCAACCTCA ACAAACAG GCGATCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11403175-11403295 2.1e-05 83_[+1]_29 chr2R:12741188-12741308 2.1e-05 49_[+1]_63 chr3L:14447073-14447193 2.1e-05 73_[+1]_39 chr2L:12076097-12076217 2.1e-05 7_[+1]_105 chr3R:6664498-6664618 2.1e-05 43_[+1]_69 chrX:5604313-5604433 2.1e-05 64_[+1]_48 chr3L:15689592-15689712 2.1e-05 86_[+1]_26 chr3R:17816472-17816592 2.1e-05 79_[+1]_33 chr3R:31070834-31070954 2.1e-05 21_[+1]_91 chr2R:21205864-21205984 2.1e-05 109_[+1]_3 chr3R:15161193-15161313 2.1e-05 11_[+1]_101 chr3L:8834599-8834719 2.1e-05 109_[+1]_3 chr3L:14641843-14641963 2.1e-05 11_[+1]_101 chr2L:3584455-3584575 2.1e-05 89_[+1]_23 chr2L:5458608-5458728 2.1e-05 99_[+1]_13 chr2R:23126226-23126346 2.1e-05 35_[+1]_77 chrX:12119493-12119613 2.1e-05 29_[+1]_83 chrX:9729743-9729863 2.1e-05 73_[+1]_39 chr3R:29290459-29290579 4.1e-05 86_[+1]_26 chr3L:13259750-13259870 4.1e-05 39_[+1]_73 chrX:4423916-4424036 7.2e-05 82_[+1]_30 chr3R:29548897-29549017 7.2e-05 85_[+1]_27 chr2L:15466057-15466177 7.2e-05 13_[+1]_99 chr2R:25098453-25098573 7.2e-05 106_[+1]_6 chr3L:4992246-4992366 7.2e-05 19_[+1]_93 chr2L:8548267-8548387 7.2e-05 34_[+1]_78 chr3L:19184236-19184356 0.00012 35_[+1]_77 chr3R:31549230-31549350 0.00012 18_[+1]_94 chr2R:14787848-14787968 0.00012 68_[+1]_44 chr3R:13990163-13990283 0.00012 27_[+1]_85 chr2L:11455892-11456012 0.00012 54_[+1]_58 chr3L:12656169-12656289 0.00012 44_[+1]_68 chr2R:13565690-13565810 0.00012 88_[+1]_24 chr2R:21847001-21847121 0.00012 17_[+1]_95 chr2L:2999794-2999914 0.00012 99_[+1]_13 chr3L:11242360-11242480 0.00012 31_[+1]_81 chr3L:13622913-13623033 0.00012 82_[+1]_30 chr3L:15315168-15315288 0.00012 84_[+1]_28 chr3R:9219450-9219570 0.00012 36_[+1]_76 chrX:12276703-12276823 0.00012 29_[+1]_83 chr2R:10107596-10107716 0.00012 61_[+1]_51 chr3R:8704811-8704931 0.00012 41_[+1]_71 chr2R:16479758-16479878 0.00012 52_[+1]_60 chr3L:11004145-11004265 0.00014 58_[+1]_54 chr2L:221754-221874 0.00014 48_[+1]_64 chr2L:20934847-20934967 0.00014 71_[+1]_41 chr2L:6826487-6826607 0.00017 69_[+1]_43 chr3R:26539286-26539406 0.00017 52_[+1]_60 chr2L:16231335-16231455 0.00017 39_[+1]_73 chr2R:8177293-8177413 0.00017 90_[+1]_22 chr2R:19264872-19264992 0.00017 65_[+1]_47 chr3R:23302327-23302447 0.00017 33_[+1]_79 chr3R:12113827-12113947 0.00017 23_[+1]_89 chr3L:12730503-12730623 0.00017 41_[+1]_71 chr3R:23134837-23134957 0.0002 14_[+1]_98 chr3R:19246484-19246604 0.0002 72_[+1]_40 chr2R:9421190-9421310 0.0002 56_[+1]_56 chr3R:4861256-4861376 0.00023 100_[+1]_12 chr3L:15732389-15732509 0.00023 88_[+1]_24 chrX:3832375-3832495 0.00023 79_[+1]_33 chrX:401511-401631 0.00023 5_[+1]_107 chr3L:13557913-13558033 0.00023 77_[+1]_35 chr2L:3834061-3834181 0.00023 61_[+1]_51 chrX:19323151-19323271 0.00031 43_[+1]_69 chr2L:18895209-18895329 0.00031 26_[+1]_86 chr3R:5114163-5114283 0.00031 31_[+1]_81 chr2R:24616120-24616240 0.00031 103_[+1]_9 chr2R:23196297-23196417 0.00031 109_[+1]_3 chr3R:10619622-10619742 0.00031 90_[+1]_22 chr2L:20935508-20935628 0.00038 45_[+1]_67 chr3L:17419515-17419635 0.00038 60_[+1]_52 chr3L:9042215-9042335 0.00038 66_[+1]_46 chr3L:15760117-15760237 0.00038 53_[+1]_59 chr2L:19218317-19218437 0.00038 4_[+1]_108 chrX:3354564-3354684 0.00038 14_[+1]_98 chr3L:12677691-12677811 0.00038 21_[+1]_91 chr3L:22520148-22520268 0.00038 42_[+1]_70 chrX:7169586-7169706 0.00038 55_[+1]_57 chr3R:16033851-16033971 0.00038 16_[+1]_96 chr3R:8327010-8327130 0.00038 60_[+1]_52 chr3R:8850725-8850845 0.00038 99_[+1]_13 chr3R:21535494-21535614 0.00043 95_[+1]_17 chr2L:17262307-17262427 0.00043 14_[+1]_98 chr2R:14314452-14314572 0.0005 65_[+1]_47 chrX:5564065-5564185 0.0005 14_[+1]_98 chr2L:8276393-8276513 0.0005 65_[+1]_47 chr3R:5327993-5328113 0.0005 55_[+1]_57 chr3R:23039278-23039398 0.0005 59_[+1]_53 chr2L:15486642-15486762 0.0005 87_[+1]_25 chr2R:8653887-8654007 0.0005 111_[+1]_1 chr3L:1438391-1438511 0.0005 80_[+1]_32 chr3L:21478057-21478177 0.0005 71_[+1]_41 chr3R:30812089-30812209 0.00053 69_[+1]_43 chr3R:8182910-8183030 0.00053 29_[+1]_83 chrX:9248177-9248297 0.00053 47_[+1]_65 chr2L:3549043-3549163 0.00053 32_[+1]_80 chrX:19783536-19783656 0.00056 13_[+1]_99 chr2L:8165937-8166057 0.00063 49_[+1]_63 chr2R:14312303-14312423 0.00063 3_[+1]_109 chr3R:13629187-13629307 0.00063 3_[+1]_109 chr3L:1549213-1549333 0.0007 89_[+1]_23 chr2L:7278023-7278143 0.0007 111_[+1]_1 chrX:3428254-3428374 0.0007 15_[+1]_97 chr2R:19569787-19569907 0.00082 40_[+1]_72 chr3L:15320299-15320419 0.00082 55_[+1]_57 chr2L:19341215-19341335 0.00082 54_[+1]_58 chrX:3394295-3394415 0.00082 29_[+1]_83 chr3L:21449432-21449552 0.00082 112_[+1] chrX:17865229-17865349 0.00082 78_[+1]_34 chrX:18946984-18947104 0.00098 18_[+1]_94 chr3R:6845769-6845889 0.00098 91_[+1]_21 chr3L:1358448-1358568 0.00098 9_[+1]_103 chr2R:11084960-11085080 0.00098 24_[+1]_88 chr2L:3078929-3079049 0.00098 46_[+1]_66 chr2L:21618595-21618715 0.00098 45_[+1]_67 chr3L:22391901-22392021 0.00098 74_[+1]_38 chr3R:22161762-22161882 0.00098 49_[+1]_63 chr3L:15640134-15640254 0.00098 33_[+1]_79 chr3R:21539679-21539799 0.00098 99_[+1]_13 chr3L:21455294-21455414 0.00098 1_[+1]_111 chr3L:1097642-1097762 0.00098 83_[+1]_29 chr2R:16374246-16374366 0.00098 32_[+1]_80 chrX:13633402-13633522 0.001 61_[+1]_51 chr3L:18404443-18404563 0.0011 8_[+1]_104 chr3L:20629262-20629382 0.0012 64_[+1]_48 chr3R:23133682-23133802 0.0013 23_[+1]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYAAAYAW width=8 seqs=126 chr2R:11403175-11403295 ( 84) GCAAACAA 1 chr2R:12741188-12741308 ( 50) GCAAACAA 1 chr3L:14447073-14447193 ( 74) GCAAACAA 1 chr2L:12076097-12076217 ( 8) GCAAACAA 1 chr3R:6664498-6664618 ( 44) GCAAACAA 1 chrX:5604313-5604433 ( 65) GCAAACAA 1 chr3L:15689592-15689712 ( 87) GCAAACAA 1 chr3R:17816472-17816592 ( 80) GCAAACAA 1 chr3R:31070834-31070954 ( 22) GCAAACAA 1 chr2R:21205864-21205984 ( 110) GCAAACAA 1 chr3R:15161193-15161313 ( 12) GCAAACAA 1 chr3L:8834599-8834719 ( 110) GCAAACAA 1 chr3L:14641843-14641963 ( 12) GCAAACAA 1 chr2L:3584455-3584575 ( 90) GCAAACAA 1 chr2L:5458608-5458728 ( 100) GCAAACAA 1 chr2R:23126226-23126346 ( 36) GCAAACAA 1 chrX:12119493-12119613 ( 30) GCAAACAA 1 chrX:9729743-9729863 ( 74) GCAAACAA 1 chr3R:29290459-29290579 ( 87) GCAAACAT 1 chr3L:13259750-13259870 ( 40) GCAAACAT 1 chrX:4423916-4424036 ( 83) GCAAATAA 1 chr3R:29548897-29549017 ( 86) GCAAATAA 1 chr2L:15466057-15466177 ( 14) GCAAATAA 1 chr2R:25098453-25098573 ( 107) GCAAATAA 1 chr3L:4992246-4992366 ( 20) GCAAATAA 1 chr2L:8548267-8548387 ( 35) GCAAATAA 1 chr3L:19184236-19184356 ( 36) GCAAATAT 1 chr3R:31549230-31549350 ( 19) GCAAATAT 1 chr2R:14787848-14787968 ( 69) GCAAATAT 1 chr3R:13990163-13990283 ( 28) GCAAACAC 1 chr2L:11455892-11456012 ( 55) GCAAATAT 1 chr3L:12656169-12656289 ( 45) GCAAATAT 1 chr2R:13565690-13565810 ( 89) GCAAACAC 1 chr2R:21847001-21847121 ( 18) GCAAACAC 1 chr2L:2999794-2999914 ( 100) GCAAATAT 1 chr3L:11242360-11242480 ( 32) GCAAATAT 1 chr3L:13622913-13623033 ( 83) GCAAATAT 1 chr3L:15315168-15315288 ( 85) GCAAATAT 1 chr3R:9219450-9219570 ( 37) GCAAATAT 1 chrX:12276703-12276823 ( 30) GCAAATAT 1 chr2R:10107596-10107716 ( 62) GCAAATAT 1 chr3R:8704811-8704931 ( 42) GCAAATAT 1 chr2R:16479758-16479878 ( 53) GCAAATAT 1 chr3L:11004145-11004265 ( 59) GCAAATAC 1 chr2L:221754-221874 ( 49) GCAAATAC 1 chr2L:20934847-20934967 ( 72) GCAAATAC 1 chr2L:6826487-6826607 ( 70) GTAAACAA 1 chr3R:26539286-26539406 ( 53) GTAAACAA 1 chr2L:16231335-16231455 ( 40) GTAAACAA 1 chr2R:8177293-8177413 ( 91) GTAAACAA 1 chr2R:19264872-19264992 ( 66) GTAAACAA 1 chr3R:23302327-23302447 ( 34) GTAAACAA 1 chr3R:12113827-12113947 ( 24) GTAAACAA 1 chr3L:12730503-12730623 ( 42) GTAAACAA 1 chr3R:23134837-23134957 ( 15) GTAAACAT 1 chr3R:19246484-19246604 ( 73) GTAAACAT 1 chr2R:9421190-9421310 ( 57) GTAAACAT 1 chr3R:4861256-4861376 ( 101) ACAAACAA 1 chr3L:15732389-15732509 ( 89) ACAAACAA 1 chrX:3832375-3832495 ( 80) ACAAACAA 1 chrX:401511-401631 ( 6) ACAAACAA 1 chr3L:13557913-13558033 ( 78) ACAAACAA 1 chr2L:3834061-3834181 ( 62) ACAAACAA 1 chrX:19323151-19323271 ( 44) ACAAACAT 1 chr2L:18895209-18895329 ( 27) ACAAACAT 1 chr3R:5114163-5114283 ( 32) ACAAACAT 1 chr2R:24616120-24616240 ( 104) GTAAATAA 1 chr2R:23196297-23196417 ( 110) GTAAATAA 1 chr3R:10619622-10619742 ( 91) GTAAATAA 1 chr2L:20935508-20935628 ( 46) GTAAATAT 1 chr3L:17419515-17419635 ( 61) GTAAACAC 1 chr3L:9042215-9042335 ( 67) GTAAATAT 1 chr3L:15760117-15760237 ( 54) GTAAATAT 1 chr2L:19218317-19218437 ( 5) GTAAATAT 1 chrX:3354564-3354684 ( 15) GTAAATAT 1 chr3L:12677691-12677811 ( 22) GTAAATAT 1 chr3L:22520148-22520268 ( 43) GTAAATAT 1 chrX:7169586-7169706 ( 56) GTAAATAT 1 chr3R:16033851-16033971 ( 17) GTAAATAT 1 chr3R:8327010-8327130 ( 61) GTAAATAT 1 chr3R:8850725-8850845 ( 100) GTAAACAC 1 chr3R:21535494-21535614 ( 96) ACAAATAA 1 chr2L:17262307-17262427 ( 15) ACAAATAA 1 chr2R:14314452-14314572 ( 66) ACAAATAT 1 chrX:5564065-5564185 ( 15) ACAAATAT 1 chr2L:8276393-8276513 ( 66) ACAAATAT 1 chr3R:5327993-5328113 ( 56) ACAAATAT 1 chr3R:23039278-23039398 ( 60) ACAAACAC 1 chr2L:15486642-15486762 ( 88) ACAAACAC 1 chr2R:8653887-8654007 ( 112) ACAAACAC 1 chr3L:1438391-1438511 ( 81) ACAAATAT 1 chr3L:21478057-21478177 ( 72) ACAAACAC 1 chr3R:30812089-30812209 ( 70) GTAAATAC 1 chr3R:8182910-8183030 ( 30) GTAAATAC 1 chrX:9248177-9248297 ( 48) GTAAATAC 1 chr2L:3549043-3549163 ( 33) GTAAATAC 1 chrX:19783536-19783656 ( 14) ACAAATAC 1 chr2L:8165937-8166057 ( 50) CCAAACAA 1 chr2R:14312303-14312423 ( 4) ATAAACAA 1 chr3R:13629187-13629307 ( 4) ATAAACAA 1 chr3L:1549213-1549333 ( 90) ATAAACAT 1 chr2L:7278023-7278143 ( 112) CCAAACAT 1 chrX:3428254-3428374 ( 16) ATAAACAT 1 chr2R:19569787-19569907 ( 41) ATAAATAA 1 chr3L:15320299-15320419 ( 56) ATAAATAA 1 chr2L:19341215-19341335 ( 55) ATAAATAA 1 chrX:3394295-3394415 ( 30) ATAAATAA 1 chr3L:21449432-21449552 ( 113) CCAAATAA 1 chrX:17865229-17865349 ( 79) CCAAATAA 1 chrX:18946984-18947104 ( 19) ATAAATAT 1 chr3R:6845769-6845889 ( 92) ATAAATAT 1 chr3L:1358448-1358568 ( 10) ATAAATAT 1 chr2R:11084960-11085080 ( 25) CCAAACAC 1 chr2L:3078929-3079049 ( 47) CCAAATAT 1 chr2L:21618595-21618715 ( 46) CCAAATAT 1 chr3L:22391901-22392021 ( 75) ATAAATAT 1 chr3R:22161762-22161882 ( 50) CCAAATAT 1 chr3L:15640134-15640254 ( 34) ATAAATAT 1 chr3R:21539679-21539799 ( 100) CCAAATAT 1 chr3L:21455294-21455414 ( 2) ATAAACAC 1 chr3L:1097642-1097762 ( 84) ATAAACAC 1 chr2R:16374246-16374366 ( 33) CCAAACAC 1 chrX:13633402-13633522 ( 62) GCAAATAG 1 chr3L:18404443-18404563 ( 9) ATAAATAC 1 chr3L:20629262-20629382 ( 65) GTAAACAG 1 chr3R:23133682-23133802 ( 24) ACAAACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.53609 E= 2.1e-029 -3 -131 168 -1362 -1362 167 -1362 30 170 -1362 -1362 -1362 170 -1362 -1362 -1362 170 -1362 -1362 -1362 -1362 130 -1362 77 170 -1362 -1362 -1362 43 -18 -302 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 2.1e-029 0.301587 0.079365 0.619048 0.000000 0.000000 0.626984 0.000000 0.373016 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.484127 0.000000 0.515873 1.000000 0.000000 0.000000 0.000000 0.412698 0.174603 0.023810 0.388889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-1 regular expression -------------------------------------------------------------------------------- [GA][CT]AAA[TC]A[AT] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTGTTTG MEME-2 width = 8 sites = 69 llr = 548 E-value = 9.8e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 1::::::: probability G 14:a:2:7 matrix T 86a:a8a2 bits 2.4 * 2.1 * 1.9 * 1.7 *** Relative 1.4 *** * Entropy 1.2 ***** (11.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12741188-12741308 27 1.83e-05 CTCAAATATT TGTGTTTG TTGTACGAAA chr3L:12656169-12656289 54 1.83e-05 GGCAAATATT TGTGTTTG CTCTTCGCCG chr3R:7021211-7021331 92 1.83e-05 tCCGAGTGTG TGTGTTTG CCATCGCCAT chr2R:13032597-13032717 5 1.83e-05 CGAG TGTGTTTG CCAgtttgtt chr4:406462-406582 87 1.83e-05 AACAACATAA TGTGTTTG TTTAACTGGC chr2R:18675607-18675727 105 1.83e-05 GGGTCCGGAT TGTGTTTG CGCATAAA chr2L:14434608-14434728 31 1.83e-05 AAGTACTCTC TGTGTTTG TACACAACAC chr3R:4875379-4875499 38 1.83e-05 CCTGCAGTTG TGTGTTTG GTTAGCAATT chr2R:6823550-6823670 101 1.83e-05 CCGAGCCCAT TGTGTTTG CCTAAGGTAA chr3R:30812089-30812209 52 4.69e-05 AGTATCTTGC TTTGTTTG CAGTTCTTGA chr3R:31549230-31549350 41 4.69e-05 CTAATTTGCA TTTGTTTG CCTTACAGAT chr3R:24467424-24467544 49 4.69e-05 AATTACTTGT TTTGTTTG ATATTTAGTA chr2R:13196341-13196461 79 4.69e-05 TTTGTTTACC TTTGTTTG CTTAGAAGAA chrX:8665657-8665777 79 4.69e-05 AAAGGGGGGG TTTGTTTG AAAATATAAC chr3L:20507708-20507828 109 4.69e-05 AGTCTGGCCT TTTGTTTG TTGT chr2L:15324243-15324363 23 4.69e-05 CCATTTCCCA TTTGTTTG GACGCTACCT chr3R:29548897-29549017 32 4.69e-05 GTATTTATGA TTTGTTTG CTCATCGGCT chr3R:31070834-31070954 59 4.69e-05 GCATTTTAAA TTTGTTTG ACAAAAGTGT chrX:12217076-12217196 87 4.69e-05 TAAGCGCAtg tttgtttg tttttgtttt chrX:4574636-4574756 28 4.69e-05 gtttttcggg tttgtttg ggtttATTGC chrX:21262579-21262699 84 4.69e-05 TGTCTGCTTG TTTGTTTG TTTGTTTGAT chr3R:8704811-8704931 93 4.69e-05 AATGATTTGA TTTGTTTG CCCAATTGGT chr2L:18917697-18917817 69 4.69e-05 GCGCTTCTAA TTTGTTTG TCCTGGCAGG chr2L:3815026-3815146 32 4.69e-05 CCAAGCAATT TTTGTTTG TTTTTGGTTT chr3L:19184236-19184356 17 5.87e-05 tgtgtgtgtg tgtgtgtg GTGCATTCGG chr3R:23134837-23134957 67 5.87e-05 GGCTAAATAA TGTGTGTG CCTTGTAAGT chr3R:5327993-5328113 36 5.87e-05 CAAATATTTA TGTGTGTG CAAGCAGTGA chr2L:2999794-2999914 50 5.87e-05 gccagtgtat tgtgtgtg tctgtgtgta chr3L:22520148-22520268 7 5.87e-05 AGTGGG TGTGTGTG GCTGGGCTTA chr3L:12676871-12676991 77 5.87e-05 catgtgtgcg tgtgtgtg tTCGGCAGTG chrX:12119493-12119613 81 5.87e-05 GTATCtgcgc tgtgtgtg tgcgtgtgtg chr2L:19218317-19218437 101 7.70e-05 ATATTAGGCT TTTGTGTG GCACACGGCG chr3R:24604230-24604350 89 7.70e-05 TCATTGGTCA TTTGTGTG GGCGCGCCCC chr3L:14953112-14953232 20 8.88e-05 AGATAGATAA GGTGTTTG CACACAATTT chr3L:20667578-20667698 66 8.88e-05 GGACTTTGCT GGTGTTTG CCGTAGCCAC chrX:12276703-12276823 98 8.88e-05 AATACATCAA GGTGTTTG CATTACATTA chr3L:21478057-21478177 41 8.88e-05 GGATGGGCTG GGTGTTTG TCTGGTTATT chrX:2050761-2050881 72 1.07e-04 CTCATTGTTT GTTGTTTG CTGCGGATTG chr3R:21539679-21539799 109 1.07e-04 TCCAAATATT GTTGTTTG TTCA chr2R:9421190-9421310 45 1.07e-04 ACTTCACATG GTTGTTTG GACAGTAAAC chr3L:5994282-5994402 26 1.36e-04 TAACAAAATA TGTGTTTT AGCCTTAATC chr3R:26029623-26029743 37 1.36e-04 CATTTTGTAA TGTGTTTT TTGTTTTGGA chr3R:15161193-15161313 77 1.36e-04 ATTCTCGATG TGTGTTTT TGGGCCCGCT chr3R:26024423-26024543 76 1.36e-04 CACATGATGA TGTGTTTT GGAATTTTGT chr2R:18202728-18202848 42 1.80e-04 TGTACTGCTG TTTGTTTT CGTATATTTG chr3R:29696488-29696608 78 1.80e-04 AGAGCTCTCG TTTGTTTT TATAATATTT chr2L:3078929-3079049 95 1.80e-04 TAACACCGGG TTTGTTTT TTTTCGAAAC chrX:401511-401631 45 1.80e-04 GATCTGATAG TTTGTTTT GCAAGAGGTT chr2L:18616177-18616297 10 2.29e-04 ATATTTTCG TGTGTTTA AACTGGAAGT chr2L:18809062-18809182 18 2.29e-04 GAAAAATCAT GGTGTGTG AATTTATATT chr2L:3584455-3584575 29 2.29e-04 CAAGACCCAT CGTGTTTG TTGTTTTGAG chr3L:13615297-13615417 13 2.29e-04 GTATTTTATT TGTGTTTA CGTTTTTAAC chr2L:12588988-12589108 40 3.04e-04 CACCGTTCGA TTTGTTTA ATGTGTATAT chr2L:3570701-3570821 69 3.04e-04 TGATTTCTAA TTTGTTTA CACTCAAACA chrX:2383235-2383355 47 3.04e-04 CTGTTTGCAA TTTGTTTA GCAGCATGCC chr3L:14976127-14976247 105 3.04e-04 GTGTTGGGTT TTTGTTTA CTGTTACC chr2L:19341215-19341335 8 3.04e-04 CCAGAGG CTTGTTTG CTCAACCCGA chr2L:15486642-15486762 78 3.04e-04 TTTGAAGTAT TTTGTTTA AAACAAACAC chrX:2388119-2388239 51 3.04e-04 AACAGAGGGC GTTGTGTG AAAAGTGCTA chr2R:8653887-8654007 33 3.04e-04 GGGCTATAAA TTTGTTTA GTCATGCCGG chr3L:21455294-21455414 88 3.04e-04 CGTAACAACG CTTGTTTG ATTGTGGCTT chr2L:3834061-3834181 31 3.04e-04 TAGCGGTAGC CTTGTTTG CATGGACCGC chr2L:20968910-20969030 90 3.34e-04 CTCAAAAACT TTTGTTGG TCGTCAACAA chr2R:14982009-14982129 8 3.34e-04 TGCAGTT TTTGTTGG TACAGTGCAT chr2R:16374246-16374366 62 3.34e-04 CTGTCCACCG TTTGTTGG CTTGTTGATT chr3L:15320299-15320419 92 3.81e-04 ATTTGCGATT TTTGTGTT GTTTAGATCT chr3R:29550085-29550205 51 3.81e-04 TGAACTATCT TTTGTGTT GCATCAAGaa chr3L:13622913-13623033 60 3.81e-04 AATATATACA TTTGTGTT TCGTATTTGC chr2R:14802080-14802200 102 4.08e-04 TATGCAGCTA TGTGTGTA GGAAAAAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12741188-12741308 1.8e-05 26_[+2]_86 chr3L:12656169-12656289 1.8e-05 53_[+2]_59 chr3R:7021211-7021331 1.8e-05 91_[+2]_21 chr2R:13032597-13032717 1.8e-05 4_[+2]_108 chr4:406462-406582 1.8e-05 86_[+2]_26 chr2R:18675607-18675727 1.8e-05 104_[+2]_8 chr2L:14434608-14434728 1.8e-05 30_[+2]_82 chr3R:4875379-4875499 1.8e-05 37_[+2]_75 chr2R:6823550-6823670 1.8e-05 100_[+2]_12 chr3R:30812089-30812209 4.7e-05 51_[+2]_61 chr3R:31549230-31549350 4.7e-05 40_[+2]_72 chr3R:24467424-24467544 4.7e-05 48_[+2]_64 chr2R:13196341-13196461 4.7e-05 78_[+2]_34 chrX:8665657-8665777 4.7e-05 78_[+2]_34 chr3L:20507708-20507828 4.7e-05 108_[+2]_4 chr2L:15324243-15324363 4.7e-05 22_[+2]_90 chr3R:29548897-29549017 4.7e-05 31_[+2]_81 chr3R:31070834-31070954 4.7e-05 58_[+2]_54 chrX:12217076-12217196 4.7e-05 86_[+2]_26 chrX:4574636-4574756 4.7e-05 27_[+2]_85 chrX:21262579-21262699 4.7e-05 83_[+2]_29 chr3R:8704811-8704931 4.7e-05 92_[+2]_20 chr2L:18917697-18917817 4.7e-05 68_[+2]_44 chr2L:3815026-3815146 4.7e-05 31_[+2]_81 chr3L:19184236-19184356 5.9e-05 16_[+2]_96 chr3R:23134837-23134957 5.9e-05 66_[+2]_46 chr3R:5327993-5328113 5.9e-05 35_[+2]_77 chr2L:2999794-2999914 5.9e-05 49_[+2]_63 chr3L:22520148-22520268 5.9e-05 6_[+2]_106 chr3L:12676871-12676991 5.9e-05 76_[+2]_36 chrX:12119493-12119613 5.9e-05 80_[+2]_32 chr2L:19218317-19218437 7.7e-05 100_[+2]_12 chr3R:24604230-24604350 7.7e-05 88_[+2]_24 chr3L:14953112-14953232 8.9e-05 19_[+2]_93 chr3L:20667578-20667698 8.9e-05 65_[+2]_47 chrX:12276703-12276823 8.9e-05 97_[+2]_15 chr3L:21478057-21478177 8.9e-05 40_[+2]_72 chrX:2050761-2050881 0.00011 71_[+2]_41 chr3R:21539679-21539799 0.00011 108_[+2]_4 chr2R:9421190-9421310 0.00011 44_[+2]_68 chr3L:5994282-5994402 0.00014 25_[+2]_87 chr3R:26029623-26029743 0.00014 36_[+2]_76 chr3R:15161193-15161313 0.00014 76_[+2]_36 chr3R:26024423-26024543 0.00014 75_[+2]_37 chr2R:18202728-18202848 0.00018 41_[+2]_71 chr3R:29696488-29696608 0.00018 77_[+2]_35 chr2L:3078929-3079049 0.00018 94_[+2]_18 chrX:401511-401631 0.00018 44_[+2]_68 chr2L:18616177-18616297 0.00023 9_[+2]_103 chr2L:18809062-18809182 0.00023 17_[+2]_95 chr2L:3584455-3584575 0.00023 28_[+2]_84 chr3L:13615297-13615417 0.00023 12_[+2]_100 chr2L:12588988-12589108 0.0003 39_[+2]_73 chr2L:3570701-3570821 0.0003 68_[+2]_44 chrX:2383235-2383355 0.0003 46_[+2]_66 chr3L:14976127-14976247 0.0003 104_[+2]_8 chr2L:19341215-19341335 0.0003 7_[+2]_105 chr2L:15486642-15486762 0.0003 77_[+2]_35 chrX:2388119-2388239 0.0003 50_[+2]_62 chr2R:8653887-8654007 0.0003 32_[+2]_80 chr3L:21455294-21455414 0.0003 87_[+2]_25 chr2L:3834061-3834181 0.0003 30_[+2]_82 chr2L:20968910-20969030 0.00033 89_[+2]_23 chr2R:14982009-14982129 0.00033 7_[+2]_105 chr2R:16374246-16374366 0.00033 61_[+2]_51 chr3L:15320299-15320419 0.00038 91_[+2]_21 chr3R:29550085-29550205 0.00038 50_[+2]_62 chr3L:13622913-13623033 0.00038 59_[+2]_53 chr2R:14802080-14802200 0.00041 101_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTGTTTG width=8 seqs=69 chr2R:12741188-12741308 ( 27) TGTGTTTG 1 chr3L:12656169-12656289 ( 54) TGTGTTTG 1 chr3R:7021211-7021331 ( 92) TGTGTTTG 1 chr2R:13032597-13032717 ( 5) TGTGTTTG 1 chr4:406462-406582 ( 87) TGTGTTTG 1 chr2R:18675607-18675727 ( 105) TGTGTTTG 1 chr2L:14434608-14434728 ( 31) TGTGTTTG 1 chr3R:4875379-4875499 ( 38) TGTGTTTG 1 chr2R:6823550-6823670 ( 101) TGTGTTTG 1 chr3R:30812089-30812209 ( 52) TTTGTTTG 1 chr3R:31549230-31549350 ( 41) TTTGTTTG 1 chr3R:24467424-24467544 ( 49) TTTGTTTG 1 chr2R:13196341-13196461 ( 79) TTTGTTTG 1 chrX:8665657-8665777 ( 79) TTTGTTTG 1 chr3L:20507708-20507828 ( 109) TTTGTTTG 1 chr2L:15324243-15324363 ( 23) TTTGTTTG 1 chr3R:29548897-29549017 ( 32) TTTGTTTG 1 chr3R:31070834-31070954 ( 59) TTTGTTTG 1 chrX:12217076-12217196 ( 87) TTTGTTTG 1 chrX:4574636-4574756 ( 28) TTTGTTTG 1 chrX:21262579-21262699 ( 84) TTTGTTTG 1 chr3R:8704811-8704931 ( 93) TTTGTTTG 1 chr2L:18917697-18917817 ( 69) TTTGTTTG 1 chr2L:3815026-3815146 ( 32) TTTGTTTG 1 chr3L:19184236-19184356 ( 17) TGTGTGTG 1 chr3R:23134837-23134957 ( 67) TGTGTGTG 1 chr3R:5327993-5328113 ( 36) TGTGTGTG 1 chr2L:2999794-2999914 ( 50) TGTGTGTG 1 chr3L:22520148-22520268 ( 7) TGTGTGTG 1 chr3L:12676871-12676991 ( 77) TGTGTGTG 1 chrX:12119493-12119613 ( 81) TGTGTGTG 1 chr2L:19218317-19218437 ( 101) TTTGTGTG 1 chr3R:24604230-24604350 ( 89) TTTGTGTG 1 chr3L:14953112-14953232 ( 20) GGTGTTTG 1 chr3L:20667578-20667698 ( 66) GGTGTTTG 1 chrX:12276703-12276823 ( 98) GGTGTTTG 1 chr3L:21478057-21478177 ( 41) GGTGTTTG 1 chrX:2050761-2050881 ( 72) GTTGTTTG 1 chr3R:21539679-21539799 ( 109) GTTGTTTG 1 chr2R:9421190-9421310 ( 45) GTTGTTTG 1 chr3L:5994282-5994402 ( 26) TGTGTTTT 1 chr3R:26029623-26029743 ( 37) TGTGTTTT 1 chr3R:15161193-15161313 ( 77) TGTGTTTT 1 chr3R:26024423-26024543 ( 76) TGTGTTTT 1 chr2R:18202728-18202848 ( 42) TTTGTTTT 1 chr3R:29696488-29696608 ( 78) TTTGTTTT 1 chr2L:3078929-3079049 ( 95) TTTGTTTT 1 chrX:401511-401631 ( 45) TTTGTTTT 1 chr2L:18616177-18616297 ( 10) TGTGTTTA 1 chr2L:18809062-18809182 ( 18) GGTGTGTG 1 chr2L:3584455-3584575 ( 29) CGTGTTTG 1 chr3L:13615297-13615417 ( 13) TGTGTTTA 1 chr2L:12588988-12589108 ( 40) TTTGTTTA 1 chr2L:3570701-3570821 ( 69) TTTGTTTA 1 chrX:2383235-2383355 ( 47) TTTGTTTA 1 chr3L:14976127-14976247 ( 105) TTTGTTTA 1 chr2L:19341215-19341335 ( 8) CTTGTTTG 1 chr2L:15486642-15486762 ( 78) TTTGTTTA 1 chrX:2388119-2388239 ( 51) GTTGTGTG 1 chr2R:8653887-8654007 ( 33) TTTGTTTA 1 chr3L:21455294-21455414 ( 88) CTTGTTTG 1 chr2L:3834061-3834181 ( 31) CTTGTTTG 1 chr2L:20968910-20969030 ( 90) TTTGTTGG 1 chr2R:14982009-14982129 ( 8) TTTGTTGG 1 chr2R:16374246-16374366 ( 62) TTTGTTGG 1 chr3L:15320299-15320419 ( 92) TTTGTGTT 1 chr3R:29550085-29550205 ( 51) TTTGTGTT 1 chr3L:13622913-13623033 ( 60) TTTGTGTT 1 chr2R:14802080-14802200 ( 102) TGTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4486 E= 9.8e-014 -1275 -177 -57 143 -1275 -1275 112 94 -1275 -1275 -1275 173 -1275 -1275 237 -1275 -1275 -1275 -1275 173 -1275 -1275 17 137 -1275 -1275 -215 166 -124 -1275 187 -92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 9.8e-014 0.000000 0.057971 0.130435 0.811594 0.000000 0.000000 0.420290 0.579710 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.217391 0.782609 0.000000 0.000000 0.043478 0.956522 0.130435 0.000000 0.710145 0.159420 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGTTTG MEME-2 regular expression -------------------------------------------------------------------------------- T[TG]TGT[TG]TG -------------------------------------------------------------------------------- Time 13.49 secs. ******************************************************************************** ******************************************************************************** MOTIF MAATATTT MEME-3 width = 8 sites = 33 llr = 287 E-value = 7.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6a9:a::: pos.-specific C 4:1::::: probability G :::::::: matrix T :::a:aaa bits 2.4 2.1 1.9 1.7 * ***** Relative 1.4 * ***** Entropy 1.2 ******* (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATATTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20918817-20918937 52 4.74e-05 GAACTCCTGT CAATATTT ACATTAATTC chrX:18946984-18947104 74 4.74e-05 CCTATAACCA CAATATTT AGTAAATTTT chr2L:11455892-11456012 80 4.74e-05 CATCATTTTT CAATATTT GAGCGTGAAA chr2R:12458252-12458372 85 4.74e-05 GGGACTTAGC CAATATTT ATTTAGGTAC chr3R:10169222-10169342 42 4.74e-05 ATAAGGATTG CAATATTT GCAGATCAGA chrX:4574636-4574756 59 4.74e-05 TCAGTTGATT CAATATTT ACCCTGCTTA chr2L:7278023-7278143 43 4.74e-05 GACCAGTATC CAATATTT GCACAAGTTA chr3R:17646939-17647059 12 4.74e-05 TCAAAAATGT CAATATTT ACAGTTTGAT chr4:406462-406582 65 4.74e-05 GTGCGGCGCA CAATATTT GTCCAACAAC chr2R:22238554-22238674 32 4.74e-05 GGCGAGAGGT CAATATTT GCAAGGGCGA chr3R:4875379-4875499 15 4.74e-05 TGCCTTAAAA CAATATTT GCGCGCCTGC chr3R:8704811-8704931 17 4.74e-05 AAAGGTCAAA CAATATTT GTTTAACAAT chr3L:19184236-19184356 79 1.21e-04 CGTTTTGTCA AAATATTT GTGTAAGAAC chr3L:14447073-14447193 95 1.21e-04 AACTTCATGC AAATATTT ACTCCAACAG chrX:14629523-14629643 104 1.21e-04 TTATAATTTG AAATATTT ATATTTATG chrX:4459792-4459912 107 1.21e-04 AGAATTAAAA AAATATTT AAATTC chr3L:18404443-18404563 57 1.21e-04 TATCTAAAAG AAATATTT AGTTTAATGT chr3R:5327993-5328113 27 1.21e-04 CTTGCAAATC AAATATTT ATGTGTGTGC chr3L:11004145-11004265 26 1.21e-04 GCTGGTCGTC AAATATTT GAGGTTGACT chr2R:21205864-21205984 44 1.21e-04 attataactt aaatattt atttatttat chr2L:11486215-11486335 43 1.21e-04 ACTAACTTAG AAATATTT TTATAATAAC chrX:12217076-12217196 49 1.21e-04 TTCCGACGTT AAATATTT TTTTAATGAT chr2R:14802080-14802200 41 1.21e-04 CAACCAGTTT AAATATTT ACCCAATATT chr3R:19246484-19246604 17 1.21e-04 TAGCCAATGT AAATATTT ACTATTTTCA chr3L:4992246-4992366 30 1.21e-04 GCAAATAAGT AAATATTT ACTATTTACT chr3R:13629187-13629307 28 1.21e-04 AACTATAGAT AAATATTT TCTTATTTTA chr2L:20934847-20934967 12 1.21e-04 ATGTCTCTTT AAATATTT GTAAATTGAG chrX:3428254-3428374 8 1.21e-04 CTATGTC AAATATTT ATAAACATAC chr2L:3815026-3815146 106 1.21e-04 TGTGCCTTTC AAATATTT TTCGCAA chr2L:7298886-7299006 84 1.52e-04 TATCAGATTT CACTATTT TGGCCACTTT chrX:7579958-7580078 57 1.99e-04 TTGAGTGTGG AACTATTT CATATTTGCA chr3R:24467424-24467544 83 1.99e-04 AATGTTTCCA AACtattt tagtttatta chr2L:221754-221874 21 1.99e-04 CCTCAATGAC AACTATTT GCATTGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20918817-20918937 4.7e-05 51_[+3]_61 chrX:18946984-18947104 4.7e-05 73_[+3]_39 chr2L:11455892-11456012 4.7e-05 79_[+3]_33 chr2R:12458252-12458372 4.7e-05 84_[+3]_28 chr3R:10169222-10169342 4.7e-05 41_[+3]_71 chrX:4574636-4574756 4.7e-05 58_[+3]_54 chr2L:7278023-7278143 4.7e-05 42_[+3]_70 chr3R:17646939-17647059 4.7e-05 11_[+3]_101 chr4:406462-406582 4.7e-05 64_[+3]_48 chr2R:22238554-22238674 4.7e-05 31_[+3]_81 chr3R:4875379-4875499 4.7e-05 14_[+3]_98 chr3R:8704811-8704931 4.7e-05 16_[+3]_96 chr3L:19184236-19184356 0.00012 78_[+3]_34 chr3L:14447073-14447193 0.00012 94_[+3]_18 chrX:14629523-14629643 0.00012 103_[+3]_9 chrX:4459792-4459912 0.00012 106_[+3]_6 chr3L:18404443-18404563 0.00012 56_[+3]_56 chr3R:5327993-5328113 0.00012 26_[+3]_86 chr3L:11004145-11004265 0.00012 25_[+3]_87 chr2R:21205864-21205984 0.00012 43_[+3]_69 chr2L:11486215-11486335 0.00012 42_[+3]_70 chrX:12217076-12217196 0.00012 48_[+3]_64 chr2R:14802080-14802200 0.00012 40_[+3]_72 chr3R:19246484-19246604 0.00012 16_[+3]_96 chr3L:4992246-4992366 0.00012 29_[+3]_83 chr3R:13629187-13629307 0.00012 27_[+3]_85 chr2L:20934847-20934967 0.00012 11_[+3]_101 chrX:3428254-3428374 0.00012 7_[+3]_105 chr2L:3815026-3815146 0.00012 105_[+3]_7 chr2L:7298886-7299006 0.00015 83_[+3]_29 chrX:7579958-7580078 0.0002 56_[+3]_56 chr3R:24467424-24467544 0.0002 82_[+3]_30 chr2L:221754-221874 0.0002 20_[+3]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAATATTT width=8 seqs=33 chr3L:20918817-20918937 ( 52) CAATATTT 1 chrX:18946984-18947104 ( 74) CAATATTT 1 chr2L:11455892-11456012 ( 80) CAATATTT 1 chr2R:12458252-12458372 ( 85) CAATATTT 1 chr3R:10169222-10169342 ( 42) CAATATTT 1 chrX:4574636-4574756 ( 59) CAATATTT 1 chr2L:7278023-7278143 ( 43) CAATATTT 1 chr3R:17646939-17647059 ( 12) CAATATTT 1 chr4:406462-406582 ( 65) CAATATTT 1 chr2R:22238554-22238674 ( 32) CAATATTT 1 chr3R:4875379-4875499 ( 15) CAATATTT 1 chr3R:8704811-8704931 ( 17) CAATATTT 1 chr3L:19184236-19184356 ( 79) AAATATTT 1 chr3L:14447073-14447193 ( 95) AAATATTT 1 chrX:14629523-14629643 ( 104) AAATATTT 1 chrX:4459792-4459912 ( 107) AAATATTT 1 chr3L:18404443-18404563 ( 57) AAATATTT 1 chr3R:5327993-5328113 ( 27) AAATATTT 1 chr3L:11004145-11004265 ( 26) AAATATTT 1 chr2R:21205864-21205984 ( 44) AAATATTT 1 chr2L:11486215-11486335 ( 43) AAATATTT 1 chrX:12217076-12217196 ( 49) AAATATTT 1 chr2R:14802080-14802200 ( 41) AAATATTT 1 chr3R:19246484-19246604 ( 17) AAATATTT 1 chr3L:4992246-4992366 ( 30) AAATATTT 1 chr3R:13629187-13629307 ( 28) AAATATTT 1 chr2L:20934847-20934967 ( 12) AAATATTT 1 chrX:3428254-3428374 ( 8) AAATATTT 1 chr2L:3815026-3815146 ( 106) AAATATTT 1 chr2L:7298886-7299006 ( 84) CACTATTT 1 chrX:7579958-7580078 ( 57) AACTATTT 1 chr3R:24467424-24467544 ( 83) AACTATTT 1 chr2L:221754-221874 ( 21) AACTATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 7.6e+000 98 100 -1169 -1169 170 -1169 -1169 -1169 152 -70 -1169 -1169 -1169 -1169 -1169 173 170 -1169 -1169 -1169 -1169 -1169 -1169 173 -1169 -1169 -1169 173 -1169 -1169 -1169 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 7.6e+000 0.606061 0.393939 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.878788 0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAATATTT MEME-3 regular expression -------------------------------------------------------------------------------- [AC]AATATTT -------------------------------------------------------------------------------- Time 19.41 secs. ******************************************************************************** ******************************************************************************** MOTIF SKGCGGCS MEME-4 width = 8 sites = 12 llr = 122 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C 3::a::93 probability G 768:aa17 matrix T :4:::::: bits 2.4 *** 2.1 *** 1.9 **** 1.7 ***** Relative 1.4 * ****** Entropy 1.2 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGCG consensus CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23039278-23039398 83 2.07e-06 ATTACACAAA GGGCGGCG GCGGTGGCAG chr2R:10107596-10107716 11 2.07e-06 AGCCACAGGA GGGCGGCG ACAACTAACC chr2L:18934749-18934869 59 9.49e-06 GACCATTCAA GTGCGGCG AATTGAGTTT chr4:406462-406582 55 9.49e-06 GTCGTGGCTG GTGCGGCG CACAATATTT chr2L:518224-518344 102 1.16e-05 GAGAGAGCAA CGGCGGCC ATGGGTGCAA chr3R:23134837-23134957 40 1.16e-05 TACACGGCGT CGGCGGCC CAAAAAGATG chrX:19783536-19783656 88 1.82e-05 GCGACTGTGG CTGCGGCG TCGCAGTCGA chrX:3504428-3504548 44 1.82e-05 TGGCCAAGCA GTGCGGCC ATAAGGCGGC chr2L:20935508-20935628 11 2.14e-05 ATAGATATGC GGACGGCG TGTATTGGCA chr3R:4947882-4948002 54 2.14e-05 ACGAATGTCG GGACGGCG CGAACGCCAT chr2R:16374246-16374366 97 2.48e-05 TTGGCTTTGT CTGCGGCC GGAGCCTAAG chr2R:24616120-24616240 47 2.68e-05 ACTCCTGATT GGGCGGGG AATTTCCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23039278-23039398 2.1e-06 82_[+4]_30 chr2R:10107596-10107716 2.1e-06 10_[+4]_102 chr2L:18934749-18934869 9.5e-06 58_[+4]_54 chr4:406462-406582 9.5e-06 54_[+4]_58 chr2L:518224-518344 1.2e-05 101_[+4]_11 chr3R:23134837-23134957 1.2e-05 39_[+4]_73 chrX:19783536-19783656 1.8e-05 87_[+4]_25 chrX:3504428-3504548 1.8e-05 43_[+4]_69 chr2L:20935508-20935628 2.1e-05 10_[+4]_102 chr3R:4947882-4948002 2.1e-05 53_[+4]_59 chr2R:16374246-16374366 2.5e-05 96_[+4]_16 chr2R:24616120-24616240 2.7e-05 46_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SKGCGGCS width=8 seqs=12 chr3R:23039278-23039398 ( 83) GGGCGGCG 1 chr2R:10107596-10107716 ( 11) GGGCGGCG 1 chr2L:18934749-18934869 ( 59) GTGCGGCG 1 chr4:406462-406582 ( 55) GTGCGGCG 1 chr2L:518224-518344 ( 102) CGGCGGCC 1 chr3R:23134837-23134957 ( 40) CGGCGGCC 1 chrX:19783536-19783656 ( 88) CTGCGGCG 1 chrX:3504428-3504548 ( 44) GTGCGGCC 1 chr2L:20935508-20935628 ( 11) GGACGGCG 1 chr3R:4947882-4948002 ( 54) GGACGGCG 1 chr2R:16374246-16374366 ( 97) CTGCGGCC 1 chr2R:24616120-24616240 ( 47) GGGCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.1e+004 -1023 76 178 -1023 -1023 -1023 159 46 -88 -1023 210 -1023 -1023 234 -1023 -1023 -1023 -1023 237 -1023 -1023 -1023 237 -1023 -1023 222 -122 -1023 -1023 76 178 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.1e+004 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.583333 0.416667 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.333333 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGCGGCS MEME-4 regular expression -------------------------------------------------------------------------------- [GC][GT]GCGGC[GC] -------------------------------------------------------------------------------- Time 25.25 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCTGGC MEME-5 width = 8 sites = 6 llr = 69 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a2::a probability G :aa:2aa: matrix T a:::7::: bits 2.4 *** *** 2.1 *** *** 1.9 *** *** 1.7 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (16.6 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCTGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26539286-26539406 92 5.01e-06 ACATTAGTGC TGGCTGGC TCGTTGACAT chr2L:7592955-7593075 51 5.01e-06 CTTTTAGCCG TGGCTGGC TTACCTTACC chr3R:23302327-23302447 55 5.01e-06 CAACGAGGTC TGGCTGGC AAATAGCAGC chrX:3428254-3428374 103 5.01e-06 TGCCATACTT TGGCTGGC GTAAGGATCT chr2L:20968910-20969030 55 8.23e-06 TTTCCAGGAC TGGCGGGC CAATGTTTAC chr3L:17140133-17140253 62 1.15e-05 TGTTACGCTG TGGCCGGC CGAGCGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26539286-26539406 5e-06 91_[+5]_21 chr2L:7592955-7593075 5e-06 50_[+5]_62 chr3R:23302327-23302447 5e-06 54_[+5]_58 chrX:3428254-3428374 5e-06 102_[+5]_10 chr2L:20968910-20969030 8.2e-06 54_[+5]_58 chr3L:17140133-17140253 1.2e-05 61_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCTGGC width=8 seqs=6 chr3R:26539286-26539406 ( 92) TGGCTGGC 1 chr2L:7592955-7593075 ( 51) TGGCTGGC 1 chr3R:23302327-23302447 ( 55) TGGCTGGC 1 chrX:3428254-3428374 ( 103) TGGCTGGC 1 chr2L:20968910-20969030 ( 55) TGGCGGGC 1 chr3L:17140133-17140253 ( 62) TGGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 1.5e+004 -923 -923 -923 173 -923 -923 237 -923 -923 -923 237 -923 -923 234 -923 -923 -923 -24 -22 114 -923 -923 237 -923 -923 -923 237 -923 -923 234 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGGC MEME-5 regular expression -------------------------------------------------------------------------------- TGGCTGGC -------------------------------------------------------------------------------- Time 31.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12730503-12730623 8.22e-02 120 chr2R:16374246-16374366 3.45e-03 96_[+4(2.48e-05)]_16 chr3R:12113827-12113947 2.49e-01 120 chr3L:13615297-13615417 6.26e-02 120 chr3L:21478057-21478177 1.75e-03 40_[+2(8.88e-05)]_72 chr2R:9421190-9421310 2.64e-02 120 chr2R:16479758-16479878 2.38e-02 120 chr2L:3815026-3815146 1.76e-04 31_[+2(4.69e-05)]_81 chr2L:18917697-18917817 1.52e-03 68_[+2(4.69e-05)]_3_[+5(1.66e-05)]_\ 33 chr3L:1438391-1438511 2.48e-01 120 chrX:9729743-9729863 2.45e-01 46_[+1(7.22e-05)]_19_[+1(2.05e-05)]_\ 39 chrX:3428254-3428374 3.02e-04 102_[+5(5.01e-06)]_10 chr3R:10619622-10619742 1.52e-01 120 chr3R:8704811-8704931 2.23e-05 16_[+3(4.74e-05)]_68_[+2(4.69e-05)]_\ 20 chr2L:8548267-8548387 1.18e-01 34_[+1(7.22e-05)]_78 chrX:12119493-12119613 7.05e-03 29_[+1(2.05e-05)]_43_[+2(5.87e-05)]_\ 4_[+2(5.87e-05)]_10_[+2(5.87e-05)]_2 chr2L:7291477-7291597 2.29e-01 120 chr2R:23126226-23126346 1.91e-02 35_[+1(2.05e-05)]_77 chr2L:5458608-5458728 3.00e-04 99_[+1(2.05e-05)]_13 chr2L:20934847-20934967 2.04e-02 120 chr2R:10107596-10107716 4.32e-04 10_[+4(2.07e-06)]_102 chr2R:23196297-23196417 6.48e-02 120 chr3R:13629187-13629307 2.77e-03 120 chr3R:8850725-8850845 6.58e-01 120 chr2L:3834061-3834181 1.84e-02 120 chr3L:1097642-1097762 1.03e-01 120 chr2R:6823550-6823670 1.48e-01 100_[+2(1.83e-05)]_12 chrX:8444428-8444548 8.11e-01 120 chr3R:26024423-26024543 3.70e-01 120 chr3L:21455294-21455414 1.39e-01 120 chr2L:3584455-3584575 7.29e-04 89_[+1(2.05e-05)]_23 chrX:12276703-12276823 1.92e-02 97_[+2(8.88e-05)]_15 chr3R:8327010-8327130 1.69e-02 120 chr3L:14641843-14641963 1.21e-01 11_[+1(2.05e-05)]_101 chrX:9816164-9816284 2.27e-01 120 chr3R:4875379-4875499 1.86e-03 14_[+3(4.74e-05)]_15_[+2(1.83e-05)]_\ 75 chrX:9020241-9020361 9.97e-01 120 chr3R:24604230-24604350 1.50e-02 88_[+2(7.70e-05)]_24 chr2L:14434608-14434728 8.74e-02 30_[+2(1.83e-05)]_82 chrX:10243008-10243128 5.09e-01 120 chr3R:21539679-21539799 5.21e-03 120 chr3L:8834599-8834719 6.47e-03 109_[+1(2.05e-05)]_3 chr3L:12676871-12676991 8.77e-02 76_[+2(5.87e-05)]_36 chr2R:8653887-8654007 1.29e-02 120 chr3L:20629262-20629382 1.05e-01 120 chrX:5358920-5359040 4.12e-01 120 chr3R:23133682-23133802 3.55e-01 120 chr3L:13557913-13558033 1.89e-02 120 chr3L:20667578-20667698 3.18e-02 65_[+2(8.88e-05)]_47 chr2R:22238554-22238674 3.07e-02 31_[+3(4.74e-05)]_81 chr3L:4992246-4992366 9.64e-03 19_[+1(7.22e-05)]_93 chrX:401511-401631 3.24e-02 120 chrX:2388119-2388239 4.63e-01 120 chr3R:8932851-8932971 8.82e-01 120 chr3R:4947882-4948002 1.21e-02 53_[+4(2.14e-05)]_59 chr2R:9870599-9870719 6.13e-01 120 chr3R:9219450-9219570 5.44e-03 120 chr2R:18675607-18675727 1.05e-02 104_[+2(1.83e-05)]_8 chr2L:6177276-6177396 3.70e-01 120 chr3R:31706982-31707102 4.12e-01 120 chr3R:23302327-23302447 7.59e-03 54_[+5(5.01e-06)]_58 chr3R:9992517-9992637 1.98e-01 120 chr3R:19246484-19246604 6.14e-03 120 chr2R:23218159-23218279 7.61e-01 120 chr3R:16033851-16033971 3.69e-01 120 chr3L:15315168-15315288 2.24e-01 120 chr2L:15486642-15486762 4.45e-02 120 chr3R:15161193-15161313 6.88e-03 11_[+1(2.05e-05)]_101 chr3L:13622913-13623033 3.25e-03 120 chr3R:8683381-8683501 6.10e-01 120 chr3L:17140133-17140253 4.61e-03 61_[+5(1.15e-05)]_51 chr3L:13259750-13259870 2.26e-02 39_[+1(4.07e-05)]_73 chr2L:17262307-17262427 1.04e-01 120 chr3L:15640134-15640254 1.07e-02 120 chr2R:25098453-25098573 1.28e-01 106_[+1(7.22e-05)]_6 chrX:17865229-17865349 6.79e-01 120 chrX:21262579-21262699 7.33e-03 67_[+2(4.69e-05)]_8_[+2(4.69e-05)]_\ [+2(4.69e-05)]_21 chr4:406462-406582 2.36e-06 54_[+4(9.49e-06)]_2_[+3(4.74e-05)]_\ 14_[+2(1.83e-05)]_26 chr2L:8842366-8842486 8.37e-01 120 chr3L:21449432-21449552 5.22e-02 120 chr2R:9703373-9703493 5.89e-01 120 chr3R:17646939-17647059 1.42e-01 11_[+3(4.74e-05)]_101 chr2R:24616120-24616240 2.47e-03 46_[+4(2.68e-05)]_57_[+4(4.27e-05)]_\ 1 chr2R:11547214-11547334 9.80e-01 120 chr2R:13032597-13032717 2.16e-02 4_[+2(1.83e-05)]_12_[+2(4.69e-05)]_\ [+2(4.69e-05)]_80 chr2R:14802080-14802200 6.33e-02 120 chrX:7169586-7169706 2.52e-01 120 chr3L:11242360-11242480 2.03e-01 120 chr3L:22520148-22520268 9.62e-04 6_[+2(5.87e-05)]_106 chr3R:29550085-29550205 4.97e-01 120 chr2L:590028-590148 3.97e-01 120 chr3L:12677691-12677811 1.30e-02 120 chr3R:22161762-22161882 1.38e-01 120 chr2L:7278023-7278143 1.81e-02 42_[+3(4.74e-05)]_70 chr3L:22391901-22392021 2.88e-01 120 chr2R:12776534-12776654 2.09e-01 120 chr2R:11812293-11812413 6.17e-01 120 chr3R:7021211-7021331 1.53e-01 53_[+2(4.69e-05)]_12_[+2(4.69e-05)]_\ 10_[+2(1.83e-05)]_21 chr2L:3549043-3549163 3.99e-02 120 chrX:3394295-3394415 4.87e-01 120 chrX:3354564-3354684 8.48e-03 120 chrX:4574636-4574756 1.88e-03 27_[+2(4.69e-05)]_23_[+3(4.74e-05)]_\ 54 chr2L:2999794-2999914 5.52e-04 49_[+2(5.87e-05)]_63 chr2R:25211845-25211965 6.85e-01 120 chr2L:19218317-19218437 3.85e-03 100_[+2(7.70e-05)]_12 chrX:12217076-12217196 3.69e-03 86_[+2(4.69e-05)]_26 chrX:3832375-3832495 3.42e-01 120 chr2R:21847001-21847121 2.02e-01 120 chr3L:15760117-15760237 1.30e-02 120 chr2R:19264872-19264992 3.27e-01 120 chr2R:13565690-13565810 2.75e-01 120 chr2L:221754-221874 2.20e-02 120 chrX:9248177-9248297 1.86e-01 120 chr2L:19341215-19341335 1.17e-03 120 chr2R:14312303-14312423 4.63e-01 120 chrX:9689300-9689420 3.70e-01 120 chr3L:15732389-15732509 7.02e-02 120 chr2L:11486215-11486335 9.43e-02 120 chr3R:10169222-10169342 3.55e-02 41_[+3(4.74e-05)]_71 chr2L:18809062-18809182 3.06e-01 120 chr2L:21618595-21618715 1.19e-01 120 chr2L:3078929-3079049 7.28e-03 120 chr2L:15466057-15466177 8.89e-02 13_[+1(7.22e-05)]_99 chr2R:21205864-21205984 3.71e-03 109_[+1(2.05e-05)]_3 chr3R:29290459-29290579 2.81e-02 86_[+1(4.07e-05)]_26 chr3L:12656169-12656289 1.69e-04 53_[+2(1.83e-05)]_59 chr2R:11084960-11085080 7.35e-01 120 chr3L:11004145-11004265 2.82e-03 120 chr3R:31070834-31070954 4.74e-04 21_[+1(2.05e-05)]_29_[+2(4.69e-05)]_\ 54 chr3L:1358448-1358568 5.79e-01 120 chr3R:23039278-23039398 6.54e-04 82_[+4(2.07e-06)]_30 chr2L:7592955-7593075 1.40e-02 50_[+5(5.01e-06)]_62 chr3L:15320299-15320419 1.96e-01 120 chr3R:6949434-6949554 8.24e-01 120 chr2R:20888872-20888992 8.66e-01 120 chr3L:20623708-20623828 9.12e-01 120 chr2L:21035855-21035975 3.83e-01 120 chr3L:14976127-14976247 3.47e-01 120 chrX:2383235-2383355 3.97e-01 120 chr3R:5327993-5328113 9.76e-04 35_[+2(5.87e-05)]_77 chr3R:21535494-21535614 2.89e-01 120 chr3R:8182910-8183030 4.82e-01 120 chr3R:29548897-29549017 2.15e-04 31_[+2(4.69e-05)]_46_[+1(7.22e-05)]_\ 27 chr2L:18934749-18934869 8.89e-03 58_[+4(9.49e-06)]_54 chr3R:19790949-19791069 2.21e-01 67_[+4(9.14e-05)]_45 chr3L:15232660-15232780 3.85e-02 120 chrX:3504428-3504548 2.88e-02 43_[+4(1.82e-05)]_69 chr3L:14108337-14108457 6.88e-01 120 chr3L:18404443-18404563 9.36e-02 120 chr4:487756-487876 7.06e-01 120 chr3L:9021166-9021286 4.93e-01 120 chr2R:19569787-19569907 1.81e-01 120 chr2R:12458252-12458372 5.63e-02 84_[+3(4.74e-05)]_28 chr2L:11455892-11456012 3.64e-03 79_[+3(4.74e-05)]_33 chrX:4459792-4459912 2.12e-01 120 chr3R:16630703-16630823 7.47e-01 120 chr2L:12392540-12392660 4.60e-01 120 chrX:5596947-5597067 8.67e-01 120 chr2L:8276393-8276513 9.08e-02 120 chr3L:14988345-14988465 3.94e-02 120 chr3R:10599053-10599173 6.50e-01 120 chr3L:20687520-20687640 9.97e-01 120 chr2L:15324243-15324363 1.72e-01 22_[+2(4.69e-05)]_90 chr2L:15731747-15731867 9.12e-01 120 chr3R:17816472-17816592 2.09e-01 79_[+1(2.05e-05)]_33 chr3L:14603367-14603487 8.24e-01 120 chr3L:9042215-9042335 1.21e-02 120 chr3R:26029623-26029743 2.04e-01 120 chr2L:3819065-3819185 8.19e-01 120 chr3R:5114163-5114283 7.48e-02 120 chrX:14629523-14629643 1.38e-01 120 chr3L:15330204-15330324 9.37e-01 120 chr3L:15689592-15689712 5.09e-02 86_[+1(2.05e-05)]_26 chr3L:14953112-14953232 4.15e-02 19_[+2(8.88e-05)]_93 chr2L:18616177-18616297 2.73e-01 120 chr2R:8177293-8177413 3.76e-02 120 chr3L:20507708-20507828 4.22e-02 108_[+2(4.69e-05)]_4 chrX:5604313-5604433 2.65e-03 64_[+1(2.05e-05)]_48 chrX:3359000-3359120 5.15e-01 120 chr2R:6603099-6603219 7.27e-01 120 chrX:8665657-8665777 1.15e-01 78_[+2(4.69e-05)]_34 chr3R:19339367-19339487 8.18e-01 120 chr2R:9660264-9660384 8.85e-01 120 chr2R:14982009-14982129 2.43e-01 120 chr3R:25594351-25594471 3.91e-01 120 chr2L:5658517-5658637 2.72e-01 120 chr3L:1549213-1549333 5.22e-01 120 chr3R:6664498-6664618 1.37e-02 43_[+1(2.05e-05)]_69 chr3R:6663055-6663175 7.45e-01 120 chr2L:8165937-8166057 5.03e-02 120 chr3R:25172562-25172682 7.08e-01 120 chr2L:3570701-3570821 1.07e-01 120 chr3R:13990163-13990283 9.84e-02 120 chr3R:23134837-23134957 5.73e-05 39_[+4(1.16e-05)]_19_[+2(5.87e-05)]_\ 46 chr3L:13049858-13049978 8.83e-01 120 chr2L:18895209-18895329 1.10e-01 120 chr3L:17419515-17419635 3.81e-02 120 chr2R:22158081-22158201 2.71e-02 120 chr2R:17084247-17084367 4.48e-01 120 chr2R:20542594-20542714 7.16e-01 120 chr2L:16231335-16231455 1.07e-01 120 chr3L:12453662-12453782 3.46e-01 120 chr3L:22162642-22162762 9.00e-01 120 chr3R:4861256-4861376 5.36e-01 120 chr3R:6845769-6845889 2.98e-02 120 chr2R:13196341-13196461 1.02e-02 78_[+2(4.69e-05)]_34 chr2L:19285645-19285765 6.62e-01 120 chr2L:2967026-2967146 5.00e-01 120 chr2R:14787848-14787968 2.09e-01 120 chrX:18946984-18947104 7.06e-02 73_[+3(4.74e-05)]_39 chr3R:24467424-24467544 2.35e-02 48_[+2(4.69e-05)]_64 chr3R:31549230-31549350 7.88e-04 40_[+2(4.69e-05)]_72 chr2L:19219560-19219680 8.76e-01 120 chr2L:12076097-12076217 2.40e-02 7_[+1(2.05e-05)]_105 chr3L:20918817-20918937 8.19e-02 51_[+3(4.74e-05)]_61 chr2L:20968910-20969030 4.71e-04 54_[+5(8.23e-06)]_58 chrX:19323151-19323271 4.10e-01 120 chrX:7579958-7580078 8.11e-02 120 chr3L:12725921-12726041 3.36e-01 120 chr2L:518224-518344 2.89e-02 101_[+4(1.16e-05)]_11 chrX:5564065-5564185 3.13e-01 120 chr3R:28886930-28887050 2.35e-01 120 chrX:2050761-2050881 3.38e-02 120 chr2L:7292105-7292225 9.96e-01 120 chr3R:8197233-8197353 9.90e-01 120 chr2L:12588988-12589108 4.55e-01 120 chr3L:14447073-14447193 1.77e-03 73_[+1(2.05e-05)]_39 chr3L:2493953-2494073 6.92e-01 120 chr2L:7298886-7299006 1.29e-01 120 chr3R:26539286-26539406 1.28e-03 91_[+5(5.01e-06)]_21 chr3R:30812089-30812209 1.30e-02 51_[+2(4.69e-05)]_61 chr4:488812-488932 5.08e-01 120 chr3L:19184236-19184356 5.83e-04 [+2(5.87e-05)]_[+2(5.87e-05)]_\ [+2(5.87e-05)]_96 chrX:4423916-4424036 1.95e-01 82_[+1(7.22e-05)]_30 chrX:13633402-13633522 6.33e-01 120 chr3L:15794439-15794559 7.93e-01 120 chr3R:15587627-15587747 7.60e-01 120 chr2R:14314452-14314572 2.07e-02 120 chrX:19783536-19783656 1.82e-02 87_[+4(1.82e-05)]_25 chrX:12939946-12940066 7.95e-01 120 chrX:407566-407686 7.12e-01 120 chr2R:12741188-12741308 8.17e-05 26_[+2(1.83e-05)]_15_[+1(2.05e-05)]_\ 40_[+2(4.69e-05)]_15 chr3R:6863837-6863957 2.18e-01 120 chr2R:11403175-11403295 7.09e-03 83_[+1(2.05e-05)]_29 chr3L:5994282-5994402 2.34e-01 120 chr3R:29696488-29696608 6.37e-02 120 chr2L:2461762-2461882 5.62e-01 120 chr2L:6826487-6826607 1.07e-01 120 chr2L:20935508-20935628 4.37e-03 10_[+4(2.14e-05)]_102 chr2R:18202728-18202848 3.43e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************