******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/eyg.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:17459563-17459683 1.0000 120 chr3R:13051348-13051468 1.0000 120 chr2R:10304327-10304447 1.0000 120 chr3L:11253663-11253783 1.0000 120 chr3L:11708447-11708567 1.0000 120 chr2L:14399571-14399691 1.0000 120 chr2L:20078899-20079019 1.0000 120 chr3R:13382924-13383044 1.0000 120 chr3L:19847114-19847234 1.0000 120 chr3L:12482406-12482526 1.0000 120 chr2R:21091943-21092063 1.0000 120 chr2L:128522-128642 1.0000 120 chr3R:13052588-13052708 1.0000 120 chrX:2036905-2037025 1.0000 120 chr3R:9085489-9085609 1.0000 120 chr3L:16494787-16494907 1.0000 120 chr2R:14771583-14771703 1.0000 120 chrX:16781317-16781437 1.0000 120 chr3L:8853048-8853168 1.0000 120 chr2R:18605222-18605342 1.0000 120 chr2L:3058801-3058921 1.0000 120 chr2L:1102444-1102564 1.0000 120 chr2R:22062455-22062575 1.0000 120 chr3L:11540384-11540504 1.0000 120 chr3L:8688807-8688927 1.0000 120 chr2L:9509815-9509935 1.0000 120 chr3L:550676-550796 1.0000 120 chr2R:15304815-15304935 1.0000 120 chr3R:16309460-16309580 1.0000 120 chrX:16573788-16573908 1.0000 120 chr3R:6350782-6350902 1.0000 120 chr2L:13082263-13082383 1.0000 120 chr3R:19011066-19011186 1.0000 120 chr3R:14654486-14654606 1.0000 120 chr2L:14640571-14640691 1.0000 120 chr3R:20273692-20273812 1.0000 120 chr3R:26588152-26588272 1.0000 120 chr3L:10362711-10362831 1.0000 120 chr3R:20551739-20551859 1.0000 120 chr3L:4979138-4979258 1.0000 120 chr2L:6462440-6462560 1.0000 120 chr3R:10272862-10272982 1.0000 120 chr2L:21219880-21220000 1.0000 120 chr2L:21104254-21104374 1.0000 120 chr3L:8440974-8441094 1.0000 120 chr2R:16220907-16221027 1.0000 120 chr3L:11408893-11409013 1.0000 120 chr2L:11845330-11845450 1.0000 120 chr3R:5016490-5016610 1.0000 120 chr2L:8029706-8029826 1.0000 120 chr2R:16162584-16162704 1.0000 120 chr3R:25448659-25448779 1.0000 120 chr3L:639719-639839 1.0000 120 chr3R:19621072-19621192 1.0000 120 chr2L:15337374-15337494 1.0000 120 chr2R:15480247-15480367 1.0000 120 chr3R:9343201-9343321 1.0000 120 chr3L:4025830-4025950 1.0000 120 chr2R:24293580-24293700 1.0000 120 chr3L:18998209-18998329 1.0000 120 chr2R:9131377-9131497 1.0000 120 chr2R:21895143-21895263 1.0000 120 chr3R:18297680-18297800 1.0000 120 chr2L:4403145-4403265 1.0000 120 chr2R:10151199-10151319 1.0000 120 chr3L:17427188-17427308 1.0000 120 chr3R:29089791-29089911 1.0000 120 chr2L:4335241-4335361 1.0000 120 chr2L:19121151-19121271 1.0000 120 chr2R:17087495-17087615 1.0000 120 chr3R:25448868-25448988 1.0000 120 chr2R:7885942-7886062 1.0000 120 chr2R:17272601-17272721 1.0000 120 chr3R:22684176-22684296 1.0000 120 chr2R:11175677-11175797 1.0000 120 chr3L:18837953-18838073 1.0000 120 chr3R:20635787-20635907 1.0000 120 chr3R:9418780-9418900 1.0000 120 chr2L:2731466-2731586 1.0000 120 chr3L:15591132-15591252 1.0000 120 chr3R:29699326-29699446 1.0000 120 chr3L:8029510-8029630 1.0000 120 chr2L:7528239-7528359 1.0000 120 chr3R:13010840-13010960 1.0000 120 chr2R:23725934-23726054 1.0000 120 chr3L:15101894-15102014 1.0000 120 chr3L:18840627-18840747 1.0000 120 chr3L:5182414-5182534 1.0000 120 chr2R:22640406-22640526 1.0000 120 chr3L:12484958-12485078 1.0000 120 chr3L:4522069-4522189 1.0000 120 chr2R:9860594-9860714 1.0000 120 chrX:13568218-13568338 1.0000 120 chr2L:3748848-3748968 1.0000 120 chr3L:19872435-19872555 1.0000 120 chr2L:1650171-1650291 1.0000 120 chrX:12734462-12734582 1.0000 120 chr2L:9938063-9938183 1.0000 120 chrX:14955278-14955398 1.0000 120 chrX:8233315-8233435 1.0000 120 chr3R:31060382-31060502 1.0000 120 chr2L:13882062-13882182 1.0000 120 chr3R:30802287-30802407 1.0000 120 chr2R:9309663-9309783 1.0000 120 chr3L:6217782-6217902 1.0000 120 chr2L:12369661-12369781 1.0000 120 chrX:10184769-10184889 1.0000 120 chr2L:9911929-9912049 1.0000 120 chr2R:20996224-20996344 1.0000 120 chrX:23010720-23010840 1.0000 120 chr2R:7676380-7676500 1.0000 120 chr3L:12350448-12350568 1.0000 120 chr3R:31572010-31572130 1.0000 120 chr3R:26121911-26122031 1.0000 120 chr3L:6979729-6979849 1.0000 120 chr2R:13482201-13482321 1.0000 120 chr4:225958-226078 1.0000 120 chr3R:21854240-21854360 1.0000 120 chrX:19008968-19009088 1.0000 120 chr3R:23176826-23176946 1.0000 120 chr3L:19845580-19845700 1.0000 120 chr3L:15235616-15235736 1.0000 120 chr3R:4805084-4805204 1.0000 120 chr3R:16991952-16992072 1.0000 120 chrX:19605287-19605407 1.0000 120 chr3R:23228737-23228857 1.0000 120 chr2R:9388571-9388691 1.0000 120 chr3R:20309710-20309830 1.0000 120 chr3L:14622528-14622648 1.0000 120 chr2R:12587476-12587596 1.0000 120 chr2R:21323967-21324087 1.0000 120 chr2L:15254379-15254499 1.0000 120 chr2L:20807800-20807920 1.0000 120 chr3R:9701457-9701577 1.0000 120 chr3L:12409155-12409275 1.0000 120 chr3L:19071326-19071446 1.0000 120 chr3L:15501063-15501183 1.0000 120 chr2L:22121720-22121840 1.0000 120 chr2R:21282344-21282464 1.0000 120 chr3R:30134718-30134838 1.0000 120 chrX:15591750-15591870 1.0000 120 chrX:12221624-12221744 1.0000 120 chr2R:15613849-15613969 1.0000 120 chr3R:11244094-11244214 1.0000 120 chr2R:6871840-6871960 1.0000 120 chr3L:3760840-3760960 1.0000 120 chr2R:10555477-10555597 1.0000 120 chrX:8193188-8193308 1.0000 120 chr3L:603919-604039 1.0000 120 chr2R:17161026-17161146 1.0000 120 chrX:4262851-4262971 1.0000 120 chr3L:10738382-10738502 1.0000 120 chr3L:1578582-1578702 1.0000 120 chr3L:15968017-15968137 1.0000 120 chr3R:19924431-19924551 1.0000 120 chrX:1083274-1083394 1.0000 120 chrX:3357757-3357877 1.0000 120 chr3R:22121403-22121523 1.0000 120 chr2L:7525410-7525530 1.0000 120 chr3R:16223341-16223461 1.0000 120 chr2L:6465680-6465800 1.0000 120 chrX:14602650-14602770 1.0000 120 chr3R:10140391-10140511 1.0000 120 chr3L:7782367-7782487 1.0000 120 chrX:16650570-16650690 1.0000 120 chrX:1517675-1517795 1.0000 120 chr3L:1795345-1795465 1.0000 120 chr3R:28634922-28635042 1.0000 120 chr3R:21156019-21156139 1.0000 120 chr3L:18997168-18997288 1.0000 120 chr3R:25275472-25275592 1.0000 120 chr3L:132378-132498 1.0000 120 chr3R:14361782-14361902 1.0000 120 chr3R:5065122-5065242 1.0000 120 chrX:4426927-4427047 1.0000 120 chr2R:19128032-19128152 1.0000 120 chr3R:14657121-14657241 1.0000 120 chr3L:13015268-13015388 1.0000 120 chr3R:21993089-21993209 1.0000 120 chr3R:10161322-10161442 1.0000 120 chr2R:21711966-21712086 1.0000 120 chrX:10738952-10739072 1.0000 120 chr3R:29891325-29891445 1.0000 120 chr2L:7388170-7388290 1.0000 120 chr3L:22163795-22163915 1.0000 120 chrX:2061240-2061360 1.0000 120 chr3L:3765920-3766040 1.0000 120 chr3R:30058100-30058220 1.0000 120 chr2L:1628297-1628417 1.0000 120 chr3R:10827015-10827135 1.0000 120 chr2L:14377061-14377181 1.0000 120 chr2R:18171991-18172111 1.0000 120 chr2R:14307296-14307416 1.0000 120 chrX:17696850-17696970 1.0000 120 chr2R:21323632-21323752 1.0000 120 chr3L:4071910-4072030 1.0000 120 chr2R:9881522-9881642 1.0000 120 chr3R:31725823-31725943 1.0000 120 chr3L:9968369-9968489 1.0000 120 chr3R:13716999-13717119 1.0000 120 chr3L:15532722-15532842 1.0000 120 chrX:17582827-17582947 1.0000 120 chr3R:9055164-9055284 1.0000 120 chr2L:16275862-16275982 1.0000 120 chr2L:14021921-14022041 1.0000 120 chr3R:18215484-18215604 1.0000 120 chr2L:21658572-21658692 1.0000 120 chrX:18405129-18405249 1.0000 120 chr3R:5861672-5861792 1.0000 120 chr2L:13165647-13165767 1.0000 120 chr3L:9509545-9509665 1.0000 120 chr3R:9220214-9220334 1.0000 120 chr3L:22065772-22065892 1.0000 120 chr2L:10767913-10768033 1.0000 120 chrX:15076040-15076160 1.0000 120 chr3R:15265492-15265612 1.0000 120 chr2L:7809846-7809966 1.0000 120 chr3R:17115787-17115907 1.0000 120 chr3L:17015880-17016000 1.0000 120 chr3L:3149129-3149249 1.0000 120 chr3R:30305039-30305159 1.0000 120 chr2R:7699007-7699127 1.0000 120 chr2R:9554233-9554353 1.0000 120 chr2L:10967374-10967494 1.0000 120 chr2L:8692600-8692720 1.0000 120 chr2L:12529401-12529521 1.0000 120 chr2R:12173457-12173577 1.0000 120 chr3R:27153399-27153519 1.0000 120 chr2L:7239460-7239580 1.0000 120 chr3L:8584195-8584315 1.0000 120 chr3L:11580026-11580146 1.0000 120 chr3L:11049484-11049604 1.0000 120 chr2R:7012254-7012374 1.0000 120 chr2R:7748197-7748317 1.0000 120 chrX:11660613-11660733 1.0000 120 chr2R:13897661-13897781 1.0000 120 chrX:19505635-19505755 1.0000 120 chr3L:8399237-8399357 1.0000 120 chr3R:30015156-30015276 1.0000 120 chr2L:6339599-6339719 1.0000 120 chrX:5084761-5084881 1.0000 120 chr3L:8110305-8110425 1.0000 120 chr3L:8526146-8526266 1.0000 120 chr3R:16069353-16069473 1.0000 120 chr3L:1463812-1463932 1.0000 120 chr2L:20715128-20715248 1.0000 120 chr3R:4453199-4453319 1.0000 120 chr2L:1428522-1428642 1.0000 120 chr3L:12803780-12803900 1.0000 120 chr2L:2753215-2753335 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_eyg/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/eyg.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.206 G 0.202 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.206 G 0.202 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAMACACA MEME-1 width = 8 sites = 32 llr = 276 E-value = 8.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8491a2a pos.-specific C a16:9:8: probability G :1:1:::: matrix T :::::::: bits 2.3 * 2.1 * 1.8 * * * 1.6 * ** * Relative 1.4 * ***** Entropy 1.2 * ****** (12.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16069353-16069473 25 1.31e-05 TGTTTACACG CACACACA CGCGGATTGG chr3R:31725823-31725943 39 1.31e-05 TACTTTATTT CACACACA ACGGTaaaaa chrX:14602650-14602770 30 1.31e-05 TTCCTCTCCG CACACACA TCTTCGATAC chr2R:15613849-15613969 97 1.31e-05 ACCCCCACAA CACACACA AACAGACTCA chrX:15591750-15591870 107 1.31e-05 AAAATTGGAG CACACACA TTGGAA chr3L:19071326-19071446 90 1.31e-05 CTGATAGTCA CACACACA TGTATCTGTG chr3R:9701457-9701577 5 1.31e-05 CAAT CACACACA TTTTGTTCCA chr3L:6979729-6979849 107 1.31e-05 cacgcaagca cacacaca caaaca chr3R:14654486-14654606 2 1.31e-05 A CACACACA TGCACACGAT chr3R:5861672-5861792 12 3.16e-05 TTCCACAATT CAAACACA CCTCTTTAGT chrX:10738952-10739072 56 3.16e-05 GAGCGGCGAA CAAACACA GGCAAACAGA chr3L:10738382-10738502 31 3.16e-05 caaaggcaaa caaacaca gcacaaatat chr2L:20807800-20807920 10 3.16e-05 TACAGCAGG CAAACACA CCCACTTTGT chr2R:12587476-12587596 48 3.16e-05 TAGTGCATAC CAAACACA TTTACTCGCT chr4:225958-226078 20 4.07e-05 CACTTAGCAG CGCACACa tgcatgtttg chr3R:9418780-9418900 104 4.07e-05 TAAAACGCAA CGCACACA GCGCGTATA chrX:23010720-23010840 85 6.85e-05 TTGATAGAGA CACACAAA ATTAACATTC chrX:8233315-8233435 89 6.85e-05 ACCCTAGGTT CCCACACA TTGTTAAGAC chr2L:7528239-7528359 69 6.85e-05 AACTTAAAAG CACACAAA CTACACACAC chr3R:20551739-20551859 16 6.85e-05 CGAGCTGCCA CCCACACA TATGCACCGC chr3R:28634922-28635042 31 7.76e-05 AAGTTTCGAT CACGCACA TTTAACTCGG chr3R:13382924-13383044 9 9.04e-05 TATTTTCG CGAACACA TGGCGGCGTA chr3R:9220214-9220334 85 1.30e-04 ATTCGAGACC CAAACAAA TTTACCACCC chr3L:14622528-14622648 62 1.30e-04 ATTTAAGTTT CAAACAAA ACTCGAGATT chr2L:4335241-4335361 17 1.30e-04 AGTCGAACTG CAAACAAA TCTGTAATAA chr3L:4025830-4025950 93 1.30e-04 TTTATCAGCG CAAACAAA AGCCGTCGAA chr2L:128522-128642 28 1.30e-04 AAACCAGAAA CCAACACA ATGCGAAGCG chr3L:15532722-15532842 56 1.58e-04 ATTTAAAGTG CACAAACA AAAATCATAT chr3L:9968369-9968489 95 1.58e-04 TAAAATGGCG CACCCACA AGCAGCCACA chrX:13568218-13568338 102 1.58e-04 AAAGAAATAC CACAAACA GAAATGCCAC chrX:18405129-18405249 112 1.67e-04 GAAGCTTCGA CACACCCA C chr3R:20273692-20273812 1 1.80e-04 . caagcaca acaacGAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16069353-16069473 1.3e-05 24_[+1]_88 chr3R:31725823-31725943 1.3e-05 38_[+1]_74 chrX:14602650-14602770 1.3e-05 29_[+1]_83 chr2R:15613849-15613969 1.3e-05 96_[+1]_16 chrX:15591750-15591870 1.3e-05 106_[+1]_6 chr3L:19071326-19071446 1.3e-05 89_[+1]_23 chr3R:9701457-9701577 1.3e-05 4_[+1]_108 chr3L:6979729-6979849 1.3e-05 106_[+1]_6 chr3R:14654486-14654606 1.3e-05 1_[+1]_111 chr3R:5861672-5861792 3.2e-05 11_[+1]_101 chrX:10738952-10739072 3.2e-05 55_[+1]_57 chr3L:10738382-10738502 3.2e-05 30_[+1]_82 chr2L:20807800-20807920 3.2e-05 9_[+1]_103 chr2R:12587476-12587596 3.2e-05 47_[+1]_65 chr4:225958-226078 4.1e-05 19_[+1]_93 chr3R:9418780-9418900 4.1e-05 103_[+1]_9 chrX:23010720-23010840 6.8e-05 84_[+1]_28 chrX:8233315-8233435 6.8e-05 88_[+1]_24 chr2L:7528239-7528359 6.8e-05 68_[+1]_44 chr3R:20551739-20551859 6.8e-05 15_[+1]_97 chr3R:28634922-28635042 7.8e-05 30_[+1]_82 chr3R:13382924-13383044 9e-05 8_[+1]_104 chr3R:9220214-9220334 0.00013 84_[+1]_28 chr3L:14622528-14622648 0.00013 61_[+1]_51 chr2L:4335241-4335361 0.00013 16_[+1]_96 chr3L:4025830-4025950 0.00013 92_[+1]_20 chr2L:128522-128642 0.00013 27_[+1]_85 chr3L:15532722-15532842 0.00016 55_[+1]_57 chr3L:9968369-9968489 0.00016 94_[+1]_18 chrX:13568218-13568338 0.00016 101_[+1]_11 chrX:18405129-18405249 0.00017 111_[+1]_1 chr3R:20273692-20273812 0.00018 [+1]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAMACACA width=8 seqs=32 chr3R:16069353-16069473 ( 25) CACACACA 1 chr3R:31725823-31725943 ( 39) CACACACA 1 chrX:14602650-14602770 ( 30) CACACACA 1 chr2R:15613849-15613969 ( 97) CACACACA 1 chrX:15591750-15591870 ( 107) CACACACA 1 chr3L:19071326-19071446 ( 90) CACACACA 1 chr3R:9701457-9701577 ( 5) CACACACA 1 chr3L:6979729-6979849 ( 107) CACACACA 1 chr3R:14654486-14654606 ( 2) CACACACA 1 chr3R:5861672-5861792 ( 12) CAAACACA 1 chrX:10738952-10739072 ( 56) CAAACACA 1 chr3L:10738382-10738502 ( 31) CAAACACA 1 chr2L:20807800-20807920 ( 10) CAAACACA 1 chr2R:12587476-12587596 ( 48) CAAACACA 1 chr4:225958-226078 ( 20) CGCACACA 1 chr3R:9418780-9418900 ( 104) CGCACACA 1 chrX:23010720-23010840 ( 85) CACACAAA 1 chrX:8233315-8233435 ( 89) CCCACACA 1 chr2L:7528239-7528359 ( 69) CACACAAA 1 chr3R:20551739-20551859 ( 16) CCCACACA 1 chr3R:28634922-28635042 ( 31) CACGCACA 1 chr3R:13382924-13383044 ( 9) CGAACACA 1 chr3R:9220214-9220334 ( 85) CAAACAAA 1 chr3L:14622528-14622648 ( 62) CAAACAAA 1 chr2L:4335241-4335361 ( 17) CAAACAAA 1 chr3L:4025830-4025950 ( 93) CAAACAAA 1 chr2L:128522-128642 ( 28) CCAACACA 1 chr3L:15532722-15532842 ( 56) CACAAACA 1 chr3L:9968369-9968489 ( 95) CACCCACA 1 chrX:13568218-13568338 ( 102) CACAAACA 1 chrX:18405129-18405249 ( 112) CACACCCA 1 chr3R:20273692-20273812 ( 1) CAAGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 8.4e+002 -1164 228 -1164 -1164 148 -114 -111 -1164 36 160 -1164 -1164 163 -272 -169 -1164 -222 218 -1164 -1164 173 -272 -1164 -1164 -64 198 -1164 -1164 178 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 8.4e+002 0.000000 1.000000 0.000000 0.000000 0.812500 0.093750 0.093750 0.000000 0.375000 0.625000 0.000000 0.000000 0.906250 0.031250 0.062500 0.000000 0.062500 0.937500 0.000000 0.000000 0.968750 0.031250 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMACACA MEME-1 regular expression -------------------------------------------------------------------------------- CA[CA]ACACA -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF RCAGCTGY MEME-2 width = 8 sites = 41 llr = 343 E-value = 8.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:7::::2 pos.-specific C :a::a115 probability G 7::a:39: matrix T ::3::6:3 bits 2.3 * ** 2.1 * ** 1.8 * ** * 1.6 * ** * Relative 1.4 * ** * Entropy 1.2 ** ** * (12.1 bits) 0.9 ***** * 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11660613-11660733 107 6.29e-06 GTCTGCATCA GCAGCTGC GACAGC chr3L:17015880-17016000 8 6.29e-06 AAAGGAT GCAGCTGC GAACGGAGTA chr3R:13010840-13010960 2 1.05e-05 A GCAGCGGC GGCGCAACAG chr3L:22163795-22163915 14 2.61e-05 CCTCGTTGTT GCTGCTGC TGATGATTAT chr2R:21282344-21282464 23 2.61e-05 AATGTTTACT GCAGCTGT TTAGTGTGTG chr3L:15101894-15102014 24 2.61e-05 tgctgttgct gctgctgc cgctgttgtt chr3L:18837953-18838073 82 2.61e-05 AGGCTCAGAA GCAGCTGT CAAATGTAAA chr3R:18297680-18297800 6 2.61e-05 TGTAG GCAGCTGT TCTCTAATAA chr2R:9131377-9131497 66 2.61e-05 AACGCCCACT GCTGCTGC GAACTGGCAC chr3R:5016490-5016610 44 2.61e-05 TTGTGCTCCT GCTGCTGC CACCACCGCT chrX:16573788-16573908 6 2.61e-05 AAAAA GCAGCTGT TTGCTTCCAT chr2L:3748848-3748968 90 3.52e-05 TACTTTTAAT ACAGCTGC AAATGTATCA chr2R:17272601-17272721 27 3.52e-05 AGATGCCAGC ACAGCTGC CTTTGTGTGG chr2R:18605222-18605342 80 3.52e-05 TTTGCTTTTC ACAGCTGC TCACGTTTTC chr2L:2753215-2753335 6 5.46e-05 GGCCC GCAGCTGA ATCGCATTCA chr3R:30015156-30015276 86 5.46e-05 ATCCCGCCCA GCTGCGGC CTACTCCTCT chr2R:21323967-21324087 49 5.46e-05 TGGATATTAC GCAGCGGT AAAATTATTA chr2R:7885942-7886062 66 5.46e-05 CGAAGTGAGG GCTGCGGC CACTGGGGCT chr2R:14307296-14307416 25 6.08e-05 TGAGTACTGG ACAGCGGC AACAGGTTCT chr3R:13051348-13051468 86 6.08e-05 GGGTCGAAGA ACAGCGGC AAACTGAATA chr3L:639719-639839 19 6.51e-05 TTTCATAGCT GCAGCCGC ATGGTTGTGC chr2L:1102444-1102564 6 7.11e-05 CGGGA GCAGCGGA CTCGAATCGC chr3R:11244094-11244214 80 8.05e-05 CGATAGTTTG GCTGCTGT TCTGGCCGCA chr2L:6339599-6339719 39 1.03e-04 TCCGCTGAGA ACAGCTGT CGACTGTCTG chr2L:9911929-9912049 74 1.03e-04 CTGGCTAACG ACAGCTGT TCGCAACGCC chr2R:23725934-23726054 63 1.03e-04 CTTTCGGCGC ACTGCTGC CGTCTCGCTC chr2L:4403145-4403265 70 1.03e-04 GTTTCCGCTG ACAGCTGT CATCGATATG chr3R:19621072-19621192 107 1.03e-04 AAAACGGCAA ACAGCTGT TCTGTT chr2L:14399571-14399691 90 1.03e-04 TAAGGAATTA ACAGCTGT GAGGGTTATG chrX:1083274-1083394 50 1.18e-04 CGGAGAGACG GCTGCTGA ATATCGATTG chr2L:3058801-3058921 4 1.18e-04 CTT GCTGCTGA GTCGCCCGAT chr2R:18171991-18172111 66 1.47e-04 TACGCAAAGC ACAGCTGA AAAGCAACAA chr3R:16309460-16309580 104 1.47e-04 ATACAAATTT ACAGCTGA TAGCTTCGT chr3L:8110305-8110425 82 1.57e-04 CGGCAACCCT GCAGCCGT GCGAAAGCGA chr2L:8692600-8692720 96 1.57e-04 CTCGCCCACC GCAGCCGT TTCGCTCGCA chr3L:11708447-11708567 26 1.57e-04 AGCGCTCTTC GCTGCCGC ACTTCACGTC chr3R:17115787-17115907 1 1.76e-04 . GCAGCTCC CCTTTGGGTC chr3R:10161322-10161442 35 1.76e-04 AGAAAACAGA GCTGCGGA CTGTTCCATT chr3R:16069353-16069473 91 1.85e-04 cgggggcggt acagcgga tcagagcgga chr2R:13897661-13897781 48 2.09e-04 ACTGAATGGA GCAGCGCC ACTCCGAGAA chr3L:8440974-8441094 74 2.09e-04 TCCGAACGCC GCAGCGCC GTTGCCTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11660613-11660733 6.3e-06 106_[+2]_6 chr3L:17015880-17016000 6.3e-06 7_[+2]_105 chr3R:13010840-13010960 1.1e-05 1_[+2]_111 chr3L:22163795-22163915 2.6e-05 13_[+2]_99 chr2R:21282344-21282464 2.6e-05 22_[+2]_90 chr3L:15101894-15102014 2.6e-05 23_[+2]_89 chr3L:18837953-18838073 2.6e-05 81_[+2]_31 chr3R:18297680-18297800 2.6e-05 5_[+2]_107 chr2R:9131377-9131497 2.6e-05 65_[+2]_47 chr3R:5016490-5016610 2.6e-05 43_[+2]_69 chrX:16573788-16573908 2.6e-05 5_[+2]_107 chr2L:3748848-3748968 3.5e-05 89_[+2]_23 chr2R:17272601-17272721 3.5e-05 26_[+2]_86 chr2R:18605222-18605342 3.5e-05 79_[+2]_33 chr2L:2753215-2753335 5.5e-05 5_[+2]_107 chr3R:30015156-30015276 5.5e-05 85_[+2]_27 chr2R:21323967-21324087 5.5e-05 48_[+2]_64 chr2R:7885942-7886062 5.5e-05 65_[+2]_47 chr2R:14307296-14307416 6.1e-05 24_[+2]_88 chr3R:13051348-13051468 6.1e-05 85_[+2]_27 chr3L:639719-639839 6.5e-05 18_[+2]_94 chr2L:1102444-1102564 7.1e-05 5_[+2]_107 chr3R:11244094-11244214 8e-05 79_[+2]_33 chr2L:6339599-6339719 0.0001 38_[+2]_74 chr2L:9911929-9912049 0.0001 73_[+2]_39 chr2R:23725934-23726054 0.0001 62_[+2]_50 chr2L:4403145-4403265 0.0001 69_[+2]_43 chr3R:19621072-19621192 0.0001 106_[+2]_6 chr2L:14399571-14399691 0.0001 89_[+2]_23 chrX:1083274-1083394 0.00012 49_[+2]_63 chr2L:3058801-3058921 0.00012 3_[+2]_109 chr2R:18171991-18172111 0.00015 65_[+2]_47 chr3R:16309460-16309580 0.00015 103_[+2]_9 chr3L:8110305-8110425 0.00016 81_[+2]_31 chr2L:8692600-8692720 0.00016 95_[+2]_17 chr3L:11708447-11708567 0.00016 25_[+2]_87 chr3R:17115787-17115907 0.00018 [+2]_112 chr3R:10161322-10161442 0.00018 34_[+2]_78 chr3R:16069353-16069473 0.00018 90_[+2]_22 chr2R:13897661-13897781 0.00021 47_[+2]_65 chr3L:8440974-8441094 0.00021 73_[+2]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAGCTGY width=8 seqs=41 chrX:11660613-11660733 ( 107) GCAGCTGC 1 chr3L:17015880-17016000 ( 8) GCAGCTGC 1 chr3R:13010840-13010960 ( 2) GCAGCGGC 1 chr3L:22163795-22163915 ( 14) GCTGCTGC 1 chr2R:21282344-21282464 ( 23) GCAGCTGT 1 chr3L:15101894-15102014 ( 24) GCTGCTGC 1 chr3L:18837953-18838073 ( 82) GCAGCTGT 1 chr3R:18297680-18297800 ( 6) GCAGCTGT 1 chr2R:9131377-9131497 ( 66) GCTGCTGC 1 chr3R:5016490-5016610 ( 44) GCTGCTGC 1 chrX:16573788-16573908 ( 6) GCAGCTGT 1 chr2L:3748848-3748968 ( 90) ACAGCTGC 1 chr2R:17272601-17272721 ( 27) ACAGCTGC 1 chr2R:18605222-18605342 ( 80) ACAGCTGC 1 chr2L:2753215-2753335 ( 6) GCAGCTGA 1 chr3R:30015156-30015276 ( 86) GCTGCGGC 1 chr2R:21323967-21324087 ( 49) GCAGCGGT 1 chr2R:7885942-7886062 ( 66) GCTGCGGC 1 chr2R:14307296-14307416 ( 25) ACAGCGGC 1 chr3R:13051348-13051468 ( 86) ACAGCGGC 1 chr3L:639719-639839 ( 19) GCAGCCGC 1 chr2L:1102444-1102564 ( 6) GCAGCGGA 1 chr3R:11244094-11244214 ( 80) GCTGCTGT 1 chr2L:6339599-6339719 ( 39) ACAGCTGT 1 chr2L:9911929-9912049 ( 74) ACAGCTGT 1 chr2R:23725934-23726054 ( 63) ACTGCTGC 1 chr2L:4403145-4403265 ( 70) ACAGCTGT 1 chr3R:19621072-19621192 ( 107) ACAGCTGT 1 chr2L:14399571-14399691 ( 90) ACAGCTGT 1 chrX:1083274-1083394 ( 50) GCTGCTGA 1 chr2L:3058801-3058921 ( 4) GCTGCTGA 1 chr2R:18171991-18172111 ( 66) ACAGCTGA 1 chr3R:16309460-16309580 ( 104) ACAGCTGA 1 chr3L:8110305-8110425 ( 82) GCAGCCGT 1 chr2L:8692600-8692720 ( 96) GCAGCCGT 1 chr3L:11708447-11708567 ( 26) GCTGCCGC 1 chr3R:17115787-17115907 ( 1) GCAGCTCC 1 chr3R:10161322-10161442 ( 35) GCTGCGGA 1 chr3R:16069353-16069473 ( 91) ACAGCGGA 1 chr2R:13897661-13897781 ( 48) GCAGCGCC 1 chr3L:8440974-8441094 ( 74) GCAGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 8.1e-001 23 -1200 170 -1200 -1200 228 -1200 -1200 128 -1200 -1200 -3 -1200 -1200 230 -1200 -1200 228 -1200 -1200 -1200 -108 41 108 -1200 -150 219 -1200 -58 124 -1200 8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 8.1e-001 0.341463 0.000000 0.658537 0.000000 0.000000 1.000000 0.000000 0.000000 0.707317 0.000000 0.000000 0.292683 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.097561 0.268293 0.634146 0.000000 0.073171 0.926829 0.000000 0.195122 0.487805 0.000000 0.317073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCTGY MEME-2 regular expression -------------------------------------------------------------------------------- [GA]C[AT]GC[TG]G[CT] -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGAGCG MEME-3 width = 8 sites = 13 llr = 130 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::18::: pos.-specific C :912::8: probability G 9:982a2a matrix T :1:::::: bits 2.3 * * 2.1 * * 1.8 *** * * 1.6 *** *** Relative 1.4 **** *** Entropy 1.2 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGAGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16069353-16069473 104 4.17e-06 gcggatcaga gcggagcg gagTTAGGA chr2L:6465680-6465800 78 4.17e-06 AAGCTCTCCA GCGGAGCG GTTACAACAA chr2L:1102444-1102564 111 4.17e-06 ACAAACGAGA GCGGAGCG GC chr3L:8853048-8853168 103 4.17e-06 ATTAACAATC GCGGAGCG GGGGGAATCA chr3L:3149129-3149249 93 7.05e-06 ATGGAGGAGC GCGGGGCG CGTATATAAT chr2R:6871840-6871960 35 1.54e-05 TCTCGCTCAC GCGCAGCG TAAACAAGTG chr3L:6979729-6979849 89 1.54e-05 caccacacat gcgcagcg cacgcaagca chr3R:14654486-14654606 32 1.54e-05 CTAAGAGCGG GCGGAGGG GGAGGTTCAT chr3L:15235616-15235736 24 1.96e-05 TTGACTTCGA GCCGAGCG GACGCGCGTT chr2L:128522-128642 38 2.57e-05 CCAACACAAT GCGAAGCG CAGCTAAAGC chr3R:6350782-6350902 78 3.17e-05 GTGAAAAGTC ACGGAGCG AATATATTCG chr2R:9131377-9131497 47 3.77e-05 ATAGCGACCA GTGGAGCG CAACGCCCAC chr2L:14021921-14022041 19 4.35e-05 TGTAGGAGTG GCGGGGGG TTGGCCGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16069353-16069473 4.2e-06 103_[+3]_9 chr2L:6465680-6465800 4.2e-06 77_[+3]_35 chr2L:1102444-1102564 4.2e-06 110_[+3]_2 chr3L:8853048-8853168 4.2e-06 102_[+3]_10 chr3L:3149129-3149249 7.1e-06 92_[+3]_20 chr2R:6871840-6871960 1.5e-05 34_[+3]_78 chr3L:6979729-6979849 1.5e-05 88_[+3]_24 chr3R:14654486-14654606 1.5e-05 31_[+3]_81 chr3L:15235616-15235736 2e-05 23_[+3]_89 chr2L:128522-128642 2.6e-05 37_[+3]_75 chr3R:6350782-6350902 3.2e-05 77_[+3]_35 chr2R:9131377-9131497 3.8e-05 46_[+3]_66 chr2L:14021921-14022041 4.4e-05 18_[+3]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGAGCG width=8 seqs=13 chr3R:16069353-16069473 ( 104) GCGGAGCG 1 chr2L:6465680-6465800 ( 78) GCGGAGCG 1 chr2L:1102444-1102564 ( 111) GCGGAGCG 1 chr3L:8853048-8853168 ( 103) GCGGAGCG 1 chr3L:3149129-3149249 ( 93) GCGGGGCG 1 chr2R:6871840-6871960 ( 35) GCGCAGCG 1 chr3L:6979729-6979849 ( 89) GCGCAGCG 1 chr3R:14654486-14654606 ( 32) GCGGAGGG 1 chr3L:15235616-15235736 ( 24) GCCGAGCG 1 chr2L:128522-128642 ( 38) GCGAAGCG 1 chr3R:6350782-6350902 ( 78) ACGGAGCG 1 chr2R:9131377-9131497 ( 47) GTGGAGCG 1 chr2L:14021921-14022041 ( 19) GCGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 5.3e+003 -192 -1035 219 -1035 -1035 216 -1035 -196 -1035 -142 219 -1035 -192 -42 193 -1035 154 -1035 -40 -1035 -1035 -1035 230 -1035 -1035 203 -40 -1035 -1035 -1035 230 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.3e+003 0.076923 0.000000 0.923077 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.076923 0.923077 0.000000 0.076923 0.153846 0.769231 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAGCG MEME-3 regular expression -------------------------------------------------------------------------------- GCGGAGCG -------------------------------------------------------------------------------- Time 19.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGGCGA MEME-4 width = 8 sites = 4 llr = 48 E-value = 4.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :a:::a:: probability G a::aa:a: matrix T ::a::::: bits 2.3 ** **** 2.1 ** **** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGGCGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9509545-9509665 42 6.17e-06 TGGCAATTTT GCTGGCGA AGCACACGAA chr3R:14361782-14361902 40 6.17e-06 GTGCTGTAAA GCTGGCGA AAAAAGTGCT chr3R:31060382-31060502 49 6.17e-06 CACTTCCTCT GCTGGCGA CGCTGCTTTT chr3R:18297680-18297800 65 6.17e-06 TTTTTCGTGT GCTGGCGA TTATGCAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9509545-9509665 6.2e-06 41_[+4]_71 chr3R:14361782-14361902 6.2e-06 39_[+4]_73 chr3R:31060382-31060502 6.2e-06 48_[+4]_64 chr3R:18297680-18297800 6.2e-06 64_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGGCGA width=8 seqs=4 chr3L:9509545-9509665 ( 42) GCTGGCGA 1 chr3R:14361782-14361902 ( 40) GCTGGCGA 1 chr3R:31060382-31060502 ( 49) GCTGGCGA 1 chr3R:18297680-18297800 ( 65) GCTGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 4.2e+004 -865 -865 230 -865 -865 227 -865 -865 -865 -865 -865 174 -865 -865 230 -865 -865 -865 230 -865 -865 227 -865 -865 -865 -865 230 -865 177 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGCGA MEME-4 regular expression -------------------------------------------------------------------------------- GCTGGCGA -------------------------------------------------------------------------------- Time 25.86 secs. ******************************************************************************** ******************************************************************************** MOTIF BCDCTCGC MEME-5 width = 8 sites = 28 llr = 243 E-value = 6.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C 3a:a38:a probability G 4:3::3a: matrix T 3:4:7::: bits 2.3 * * ** 2.1 * * ** 1.8 * * ** 1.6 * * ** Relative 1.4 * * *** Entropy 1.2 * * *** (12.5 bits) 0.9 * ***** 0.7 * ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel GCTCTCGC consensus T A CG sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:132378-132498 14 4.44e-06 AAAAATACGC GCGCTCGC TCTGTACAGT chr3L:639719-639839 38 1.10e-05 TGGTTGTGCC GCTCTCGC CTGCTCTTGC chr3L:8399237-8399357 31 1.74e-05 ATTTCGGTCA GCACTCGC TTTGCTACTT chr3R:31725823-31725943 18 1.74e-05 CCTCTCTCCC GCACTCGC TCTTACTTTA chrX:14602650-14602770 74 1.74e-05 GACACAGGCT GCACTCGC TATGCGTGCC chr2R:22640406-22640526 81 1.74e-05 AACAACTATT GCACTCGC GCCTTTCCCA chr2R:7885942-7886062 108 2.05e-05 CCCGCTCTTT GCGCCCGC TCTCT chrX:11660613-11660733 24 4.28e-05 tttgtttgct tcgctcgc aatgtttgct chr2L:8692600-8692720 105 4.28e-05 CGCAGCCGTT TCGCTCGC ACACTCCG chr2R:21323632-21323752 72 4.28e-05 TAGTCATCTC CCTCTCGC AGCGTGCTCC chr2R:23725934-23726054 75 4.28e-05 TGCTGCCGTC TCGCTCGC TGGCATTCTA chr2L:2753215-2753335 65 5.69e-05 TCTCTGTCTC TCTCTCGC CTTCCCCGAG chr2R:14307296-14307416 66 5.69e-05 CGACTCTCTC TCTCTCGC TTTTACCCTC chr2R:6871840-6871960 23 5.69e-05 TCTTCCCCGC TCTCTCGC TCACGCGCAG chr3L:6217782-6217902 50 5.69e-05 GAGAGTTCAA GCACCCGC GCTGCGATAA chr3R:9418780-9418900 65 5.69e-05 GCTCTCTCCC TCTCTCGC ACCGTCCCTC chr3L:550676-550796 19 7.61e-05 TCCCTATTCT CCGCCCGC CTTTCTTCTC chr3L:19872435-19872555 23 8.96e-05 CCTTCCCTTT GCGCTGGC AATCATCTAA chr2L:14399571-14399691 1 8.96e-05 . CCTCCCGC AATAAAAAAA chr3R:4453199-4453319 53 1.03e-04 TGTGGAAATC GCTCTGGC CTGACCCAAA chr2L:12529401-12529521 83 1.03e-04 AAGACTGCGT TCTCCCGC TCTCCCCGCT chr2R:15304815-15304935 109 1.03e-04 TCTTATTGCC GCTCTGGC CGTT chr3L:8853048-8853168 29 1.07e-04 AGACAGACTG CCACCCGC AGAGCCCAAA chr3R:9701457-9701577 106 1.20e-04 CTATTAGCGA TCACCCGC TAATTGA chr3R:20551739-20551859 30 1.32e-04 CACATATGCA CCGCTGGC GGTGTAATTA chr3L:15101894-15102014 58 1.45e-04 attgctccca cctctggc tgctctgatg chr3R:13052588-13052708 7 1.59e-04 TGCTTA GCACCGGC TTCTTTGGTA chr3L:18997168-18997288 79 1.65e-04 CCGAATCGCC CCACTGGC TCCAAAGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:132378-132498 4.4e-06 13_[+5]_99 chr3L:639719-639839 1.1e-05 37_[+5]_75 chr3L:8399237-8399357 1.7e-05 30_[+5]_82 chr3R:31725823-31725943 1.7e-05 17_[+5]_95 chrX:14602650-14602770 1.7e-05 73_[+5]_39 chr2R:22640406-22640526 1.7e-05 80_[+5]_32 chr2R:7885942-7886062 2e-05 107_[+5]_5 chrX:11660613-11660733 4.3e-05 23_[+5]_89 chr2L:8692600-8692720 4.3e-05 104_[+5]_8 chr2R:21323632-21323752 4.3e-05 71_[+5]_41 chr2R:23725934-23726054 4.3e-05 74_[+5]_38 chr2L:2753215-2753335 5.7e-05 64_[+5]_48 chr2R:14307296-14307416 5.7e-05 65_[+5]_47 chr2R:6871840-6871960 5.7e-05 22_[+5]_90 chr3L:6217782-6217902 5.7e-05 49_[+5]_63 chr3R:9418780-9418900 5.7e-05 64_[+5]_48 chr3L:550676-550796 7.6e-05 18_[+5]_94 chr3L:19872435-19872555 9e-05 22_[+5]_90 chr2L:14399571-14399691 9e-05 [+5]_112 chr3R:4453199-4453319 0.0001 52_[+5]_60 chr2L:12529401-12529521 0.0001 82_[+5]_30 chr2R:15304815-15304935 0.0001 108_[+5]_4 chr3L:8853048-8853168 0.00011 28_[+5]_84 chr3R:9701457-9701577 0.00012 105_[+5]_7 chr3R:20551739-20551859 0.00013 29_[+5]_83 chr3L:15101894-15102014 0.00014 57_[+5]_55 chr3R:13052588-13052708 0.00016 6_[+5]_106 chr3L:18997168-18997288 0.00017 78_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCDCTCGC width=8 seqs=28 chr3L:132378-132498 ( 14) GCGCTCGC 1 chr3L:639719-639839 ( 38) GCTCTCGC 1 chr3L:8399237-8399357 ( 31) GCACTCGC 1 chr3R:31725823-31725943 ( 18) GCACTCGC 1 chrX:14602650-14602770 ( 74) GCACTCGC 1 chr2R:22640406-22640526 ( 81) GCACTCGC 1 chr2R:7885942-7886062 ( 108) GCGCCCGC 1 chrX:11660613-11660733 ( 24) TCGCTCGC 1 chr2L:8692600-8692720 ( 105) TCGCTCGC 1 chr2R:21323632-21323752 ( 72) CCTCTCGC 1 chr2R:23725934-23726054 ( 75) TCGCTCGC 1 chr2L:2753215-2753335 ( 65) TCTCTCGC 1 chr2R:14307296-14307416 ( 66) TCTCTCGC 1 chr2R:6871840-6871960 ( 23) TCTCTCGC 1 chr3L:6217782-6217902 ( 50) GCACCCGC 1 chr3R:9418780-9418900 ( 65) TCTCTCGC 1 chr3L:550676-550796 ( 19) CCGCCCGC 1 chr3L:19872435-19872555 ( 23) GCGCTGGC 1 chr2L:14399571-14399691 ( 1) CCTCCCGC 1 chr3R:4453199-4453319 ( 53) GCTCTGGC 1 chr2L:12529401-12529521 ( 83) TCTCCCGC 1 chr2R:15304815-15304935 ( 109) GCTCTGGC 1 chr3L:8853048-8853168 ( 29) CCACCCGC 1 chr3R:9701457-9701577 ( 106) TCACCCGC 1 chr3R:20551739-20551859 ( 30) CCGCTGGC 1 chr3L:15101894-15102014 ( 58) CCTCTGGC 1 chr3R:13052588-13052708 ( 7) GCACCGGC 1 chr3L:18997168-18997288 ( 79) CCACTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 6.9e+004 -1145 28 108 10 -1145 228 -1145 -1145 14 -1145 50 39 -1145 228 -1145 -1145 -1145 47 -1145 125 -1145 186 30 -1145 -1145 -1145 230 -1145 -1145 228 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.9e+004 0.000000 0.250000 0.428571 0.321429 0.000000 1.000000 0.000000 0.000000 0.321429 0.000000 0.285714 0.392857 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCDCTCGC MEME-5 regular expression -------------------------------------------------------------------------------- [GTC]C[TAG]C[TC][CG]GC -------------------------------------------------------------------------------- Time 31.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17459563-17459683 2.35e-02 120 chr3R:13051348-13051468 1.00e-01 85_[+2(6.08e-05)]_27 chr2R:10304327-10304447 2.04e-02 120 chr3L:11253663-11253783 1.65e-01 120 chr3L:11708447-11708567 1.09e-02 120 chr2L:14399571-14399691 6.77e-03 [+5(8.96e-05)]_112 chr2L:20078899-20079019 1.70e-01 120 chr3R:13382924-13383044 2.51e-02 8_[+1(9.04e-05)]_104 chr3L:19847114-19847234 8.29e-01 120 chr3L:12482406-12482526 2.65e-01 120 chr2R:21091943-21092063 1.00e+00 120 chr2L:128522-128642 3.97e-03 37_[+3(2.57e-05)]_75 chr3R:13052588-13052708 1.75e-02 120 chrX:2036905-2037025 7.94e-01 120 chr3R:9085489-9085609 9.57e-01 120 chr3L:16494787-16494907 5.94e-01 120 chr2R:14771583-14771703 3.15e-01 120 chrX:16781317-16781437 1.62e-01 120 chr3L:8853048-8853168 6.94e-04 102_[+3(4.17e-06)]_10 chr2R:18605222-18605342 1.01e-01 79_[+2(3.52e-05)]_33 chr2L:3058801-3058921 8.65e-02 120 chr2L:1102444-1102564 2.85e-04 5_[+2(7.11e-05)]_97_[+3(4.17e-06)]_\ 2 chr2R:22062455-22062575 6.88e-01 120 chr3L:11540384-11540504 6.49e-01 120 chr3L:8688807-8688927 1.76e-01 120 chr2L:9509815-9509935 7.63e-01 120 chr3L:550676-550796 2.66e-01 18_[+5(7.61e-05)]_94 chr2R:15304815-15304935 1.82e-01 120 chr3R:16309460-16309580 1.48e-01 120 chrX:16573788-16573908 2.96e-02 5_[+2(2.61e-05)]_107 chr3R:6350782-6350902 4.44e-02 77_[+3(3.17e-05)]_35 chr2L:13082263-13082383 4.33e-01 120 chr3R:19011066-19011186 1.00e+00 120 chr3R:14654486-14654606 1.16e-04 1_[+1(1.31e-05)]_22_[+3(1.54e-05)]_\ 81 chr2L:14640571-14640691 8.46e-01 120 chr3R:20273692-20273812 2.10e-01 120 chr3R:26588152-26588272 4.62e-01 120 chr3L:10362711-10362831 8.20e-01 120 chr3R:20551739-20551859 1.47e-04 15_[+1(6.85e-05)]_8_[+4(3.55e-05)]_\ 81 chr3L:4979138-4979258 9.98e-01 120 chr2L:6462440-6462560 3.33e-01 120 chr3R:10272862-10272982 7.59e-01 120 chr2L:21219880-21220000 5.31e-02 120 chr2L:21104254-21104374 7.53e-01 120 chr3L:8440974-8441094 1.71e-01 120 chr2R:16220907-16221027 6.75e-01 120 chr3L:11408893-11409013 3.63e-01 120 chr2L:11845330-11845450 8.40e-01 120 chr3R:5016490-5016610 1.79e-02 43_[+2(2.61e-05)]_69 chr2L:8029706-8029826 5.83e-01 120 chr2R:16162584-16162704 1.13e-02 120 chr3R:25448659-25448779 3.87e-02 120 chr3L:639719-639839 9.01e-04 18_[+2(6.51e-05)]_11_[+5(1.10e-05)]_\ 75 chr3R:19621072-19621192 2.34e-03 120 chr2L:15337374-15337494 8.71e-01 120 chr2R:15480247-15480367 9.21e-02 120 chr3R:9343201-9343321 7.56e-01 120 chr3L:4025830-4025950 3.12e-02 120 chr2R:24293580-24293700 2.13e-01 120 chr3L:18998209-18998329 4.34e-01 120 chr2R:9131377-9131497 1.04e-03 46_[+3(3.77e-05)]_11_[+2(2.61e-05)]_\ 47 chr2R:21895143-21895263 1.18e-01 120 chr3R:18297680-18297800 7.30e-04 5_[+2(2.61e-05)]_51_[+4(6.17e-06)]_\ 48 chr2L:4403145-4403265 9.19e-02 120 chr2R:10151199-10151319 3.62e-01 120 chr3L:17427188-17427308 8.43e-01 120 chr3R:29089791-29089911 9.99e-01 120 chr2L:4335241-4335361 2.03e-01 120 chr2L:19121151-19121271 9.89e-01 120 chr2R:17087495-17087615 9.34e-02 120 chr3R:25448868-25448988 1.11e-01 120 chr2R:7885942-7886062 1.68e-03 65_[+2(5.46e-05)]_34_[+5(2.05e-05)]_\ 5 chr2R:17272601-17272721 3.71e-02 26_[+2(3.52e-05)]_86 chr3R:22684176-22684296 7.06e-01 120 chr2R:11175677-11175797 2.78e-02 120 chr3L:18837953-18838073 5.67e-02 81_[+2(2.61e-05)]_31 chr3R:20635787-20635907 5.60e-02 120 chr3R:9418780-9418900 2.74e-04 10_[+1(7.76e-05)]_46_[+5(5.69e-05)]_\ 31_[+1(4.07e-05)]_9 chr2L:2731466-2731586 9.86e-01 120 chr3L:15591132-15591252 3.85e-01 120 chr3R:29699326-29699446 9.98e-01 120 chr3L:8029510-8029630 9.90e-01 120 chr2L:7528239-7528359 1.99e-02 68_[+1(6.85e-05)]_44 chr3R:13010840-13010960 1.07e-03 1_[+2(1.05e-05)]_111 chr2R:23725934-23726054 4.65e-03 74_[+5(4.28e-05)]_38 chr3L:15101894-15102014 5.66e-03 20_[+2(2.61e-05)]_92 chr3L:18840627-18840747 7.84e-01 120 chr3L:5182414-5182534 3.40e-01 120 chr2R:22640406-22640526 9.55e-02 80_[+5(1.74e-05)]_32 chr3L:12484958-12485078 8.05e-01 120 chr3L:4522069-4522189 3.51e-01 120 chr2R:9860594-9860714 5.86e-01 120 chrX:13568218-13568338 2.49e-01 120 chr2L:3748848-3748968 2.37e-01 89_[+2(3.52e-05)]_23 chr3L:19872435-19872555 1.44e-03 22_[+5(8.96e-05)]_90 chr2L:1650171-1650291 9.98e-01 120 chrX:12734462-12734582 2.07e-02 27_[+3(6.74e-05)]_85 chr2L:9938063-9938183 3.56e-01 120 chrX:14955278-14955398 2.15e-01 120 chrX:8233315-8233435 1.53e-01 88_[+1(6.85e-05)]_24 chr3R:31060382-31060502 2.22e-02 48_[+4(6.17e-06)]_64 chr2L:13882062-13882182 1.49e-01 120 chr3R:30802287-30802407 1.43e-01 120 chr2R:9309663-9309783 8.92e-01 120 chr3L:6217782-6217902 1.72e-02 49_[+5(5.69e-05)]_63 chr2L:12369661-12369781 3.98e-01 120 chrX:10184769-10184889 9.96e-01 120 chr2L:9911929-9912049 2.13e-02 120 chr2R:20996224-20996344 3.23e-01 120 chrX:23010720-23010840 5.31e-02 84_[+1(6.85e-05)]_28 chr2R:7676380-7676500 6.88e-01 120 chr3L:12350448-12350568 3.81e-01 120 chr3R:31572010-31572130 5.55e-01 120 chr3R:26121911-26122031 7.03e-01 120 chr3L:6979729-6979849 1.49e-05 72_[+1(3.16e-05)]_8_[+3(1.54e-05)]_\ 8_[+1(1.31e-05)]_8 chr2R:13482201-13482321 1.00e+00 120 chr4:225958-226078 1.32e-02 19_[+1(4.07e-05)]_93 chr3R:21854240-21854360 2.16e-01 120 chrX:19008968-19009088 8.09e-01 120 chr3R:23176826-23176946 7.24e-01 120 chr3L:19845580-19845700 2.88e-01 120 chr3L:15235616-15235736 5.57e-03 23_[+3(1.96e-05)]_89 chr3R:4805084-4805204 8.59e-01 120 chr3R:16991952-16992072 9.68e-01 120 chrX:19605287-19605407 6.16e-01 120 chr3R:23228737-23228857 8.85e-01 120 chr2R:9388571-9388691 6.34e-01 120 chr3R:20309710-20309830 4.99e-01 120 chr3L:14622528-14622648 4.21e-01 120 chr2R:12587476-12587596 2.60e-03 47_[+1(3.16e-05)]_65 chr2R:21323967-21324087 2.18e-02 48_[+2(5.46e-05)]_64 chr2L:15254379-15254499 9.84e-01 120 chr2L:20807800-20807920 5.67e-02 9_[+1(3.16e-05)]_103 chr3R:9701457-9701577 4.86e-03 4_[+1(1.31e-05)]_108 chr3L:12409155-12409275 6.59e-01 120 chr3L:19071326-19071446 1.16e-01 87_[+1(1.31e-05)]_25 chr3L:15501063-15501183 2.34e-01 120 chr2L:22121720-22121840 2.12e-01 120 chr2R:21282344-21282464 1.69e-01 22_[+2(2.61e-05)]_90 chr3R:30134718-30134838 3.76e-01 120 chrX:15591750-15591870 8.50e-04 83_[+4(3.55e-05)]_15_[+1(1.31e-05)]_\ 6 chrX:12221624-12221744 4.92e-01 120 chr2R:15613849-15613969 5.04e-03 96_[+1(1.31e-05)]_16 chr3R:11244094-11244214 7.19e-02 79_[+2(8.05e-05)]_33 chr2R:6871840-6871960 9.54e-04 22_[+5(5.69e-05)]_4_[+3(1.54e-05)]_\ 78 chr3L:3760840-3760960 8.39e-01 120 chr2R:10555477-10555597 6.68e-01 120 chrX:8193188-8193308 7.36e-03 23_[+3(5.48e-05)]_89 chr3L:603919-604039 1.52e-01 120 chr2R:17161026-17161146 9.89e-01 120 chrX:4262851-4262971 9.66e-01 120 chr3L:10738382-10738502 8.69e-02 30_[+1(3.16e-05)]_82 chr3L:1578582-1578702 9.90e-01 120 chr3L:15968017-15968137 3.81e-01 120 chr3R:19924431-19924551 3.36e-01 120 chrX:1083274-1083394 4.92e-02 120 chrX:3357757-3357877 6.40e-01 120 chr3R:22121403-22121523 9.37e-01 120 chr2L:7525410-7525530 9.76e-01 120 chr3R:16223341-16223461 3.23e-01 120 chr2L:6465680-6465800 9.34e-03 77_[+3(4.17e-06)]_35 chrX:14602650-14602770 8.58e-04 29_[+1(1.31e-05)]_36_[+5(1.74e-05)]_\ 39 chr3R:10140391-10140511 7.79e-01 120 chr3L:7782367-7782487 8.99e-01 120 chrX:16650570-16650690 9.79e-01 120 chrX:1517675-1517795 5.62e-01 120 chr3L:1795345-1795465 8.50e-01 120 chr3R:28634922-28635042 5.73e-02 30_[+1(7.76e-05)]_82 chr3R:21156019-21156139 2.40e-01 120 chr3L:18997168-18997288 9.54e-02 120 chr3R:25275472-25275592 3.56e-01 120 chr3L:132378-132498 2.20e-03 13_[+5(4.44e-06)]_99 chr3R:14361782-14361902 8.10e-04 39_[+4(6.17e-06)]_73 chr3R:5065122-5065242 9.84e-01 120 chrX:4426927-4427047 3.60e-03 8_[+5(5.69e-05)]_39_[+5(5.69e-05)]_\ 36_[+5(7.30e-05)]_13 chr2R:19128032-19128152 5.65e-01 120 chr3R:14657121-14657241 8.24e-01 120 chr3L:13015268-13015388 1.82e-01 120 chr3R:21993089-21993209 9.47e-01 120 chr3R:10161322-10161442 7.57e-02 120 chr2R:21711966-21712086 4.79e-01 120 chrX:10738952-10739072 2.55e-02 55_[+1(3.16e-05)]_57 chr3R:29891325-29891445 6.38e-01 120 chr2L:7388170-7388290 1.74e-01 120 chr3L:22163795-22163915 1.03e-01 13_[+2(2.61e-05)]_99 chrX:2061240-2061360 1.54e-01 120 chr3L:3765920-3766040 2.65e-01 120 chr3R:30058100-30058220 8.86e-01 120 chr2L:1628297-1628417 9.82e-01 120 chr3R:10827015-10827135 4.77e-01 120 chr2L:14377061-14377181 6.85e-01 120 chr2R:18171991-18172111 2.41e-01 120 chr2R:14307296-14307416 1.32e-02 24_[+2(6.08e-05)]_33_[+5(5.69e-05)]_\ 47 chrX:17696850-17696970 9.90e-01 120 chr2R:21323632-21323752 1.05e-02 71_[+5(4.28e-05)]_41 chr3L:4071910-4072030 3.06e-01 120 chr2R:9881522-9881642 8.24e-01 120 chr3R:31725823-31725943 1.76e-03 17_[+5(1.74e-05)]_13_[+1(1.31e-05)]_\ 74 chr3L:9968369-9968489 7.36e-02 120 chr3R:13716999-13717119 7.95e-01 120 chr3L:15532722-15532842 5.16e-01 120 chrX:17582827-17582947 9.92e-01 120 chr3R:9055164-9055284 9.57e-01 120 chr2L:16275862-16275982 4.58e-02 120 chr2L:14021921-14022041 3.16e-02 18_[+3(4.35e-05)]_94 chr3R:18215484-18215604 4.37e-01 120 chr2L:21658572-21658692 3.17e-01 120 chrX:18405129-18405249 1.18e-01 120 chr3R:5861672-5861792 1.75e-01 11_[+1(3.16e-05)]_76_[+1(6.85e-05)]_\ 17 chr2L:13165647-13165767 4.23e-02 120 chr3L:9509545-9509665 4.43e-03 41_[+4(6.17e-06)]_71 chr3R:9220214-9220334 4.36e-02 120 chr3L:22065772-22065892 1.75e-01 120 chr2L:10767913-10768033 1.37e-01 120 chrX:15076040-15076160 8.33e-02 120 chr3R:15265492-15265612 7.29e-01 120 chr2L:7809846-7809966 5.92e-01 120 chr3R:17115787-17115907 2.87e-01 120 chr3L:17015880-17016000 2.86e-02 7_[+2(6.29e-06)]_105 chr3L:3149129-3149249 1.69e-02 92_[+3(7.05e-06)]_20 chr3R:30305039-30305159 6.43e-01 120 chr2R:7699007-7699127 9.62e-01 120 chr2R:9554233-9554353 7.21e-01 120 chr2L:10967374-10967494 1.63e-01 120 chr2L:8692600-8692720 2.32e-03 82_[+5(5.69e-05)]_14_[+5(4.28e-05)]_\ 8 chr2L:12529401-12529521 1.88e-02 120 chr2R:12173457-12173577 2.48e-02 120 chr3R:27153399-27153519 9.90e-01 120 chr2L:7239460-7239580 4.88e-01 120 chr3L:8584195-8584315 4.65e-01 120 chr3L:11580026-11580146 9.19e-01 120 chr3L:11049484-11049604 7.13e-01 120 chr2R:7012254-7012374 8.23e-01 120 chr2R:7748197-7748317 9.14e-01 120 chrX:11660613-11660733 1.57e-03 23_[+5(4.28e-05)]_75_[+2(6.29e-06)]_\ 6 chr2R:13897661-13897781 3.47e-02 120 chrX:19505635-19505755 1.00e+00 120 chr3L:8399237-8399357 2.68e-02 30_[+5(1.74e-05)]_82 chr3R:30015156-30015276 5.06e-03 85_[+2(5.46e-05)]_27 chr2L:6339599-6339719 4.32e-03 120 chrX:5084761-5084881 9.03e-01 120 chr3L:8110305-8110425 6.78e-03 120 chr3L:8526146-8526266 8.83e-01 120 chr3R:16069353-16069473 1.38e-05 24_[+1(1.31e-05)]_37_[+3(4.17e-06)]_\ 26_[+3(4.17e-06)]_9 chr3L:1463812-1463932 2.37e-01 120 chr2L:20715128-20715248 1.00e+00 120 chr3R:4453199-4453319 1.85e-02 120 chr2L:1428522-1428642 2.64e-01 80_[+3(7.16e-05)]_32 chr3L:12803780-12803900 6.74e-01 120 chr2L:2753215-2753335 2.35e-03 5_[+2(5.46e-05)]_51_[+5(5.69e-05)]_\ 48 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************