******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ey.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:6144397-6144517 1.0000 120 chr3R:29283353-29283473 1.0000 120 chrX:2196201-2196321 1.0000 120 chr2L:5084744-5084864 1.0000 120 chrX:8667868-8667988 1.0000 120 chr3L:3246911-3247031 1.0000 120 chr2L:10972338-10972458 1.0000 120 chr3R:27092335-27092455 1.0000 120 chrX:8469188-8469308 1.0000 120 chr3R:29076127-29076247 1.0000 120 chr3L:17506140-17506260 1.0000 120 chr3R:20765833-20765953 1.0000 120 chr2L:18843732-18843852 1.0000 120 chr2R:18698846-18698966 1.0000 120 chr3R:8142236-8142356 1.0000 120 chr2R:6693157-6693277 1.0000 120 chr3L:8368786-8368906 1.0000 120 chr2L:11328485-11328605 1.0000 120 chr3R:5331866-5331986 1.0000 120 chrX:14750600-14750720 1.0000 120 chr3L:3544396-3544516 1.0000 120 chr2R:16818809-16818929 1.0000 120 chr2L:650984-651104 1.0000 120 chr3L:7792365-7792485 1.0000 120 chr3R:19603138-19603258 1.0000 120 chr3L:14350257-14350377 1.0000 120 chr3L:18038318-18038438 1.0000 120 chr2R:24836783-24836903 1.0000 120 chr2L:11395783-11395903 1.0000 120 chr3L:6809567-6809687 1.0000 120 chr3R:11859644-11859764 1.0000 120 chr3R:30281379-30281499 1.0000 120 chrX:6030153-6030273 1.0000 120 chrX:13539610-13539730 1.0000 120 chrX:17814928-17815048 1.0000 120 chr3L:21594551-21594671 1.0000 120 chr3R:31956397-31956517 1.0000 120 chr3R:9612386-9612506 1.0000 120 chrX:13541318-13541438 1.0000 120 chr3R:15566473-15566593 1.0000 120 chrX:3389950-3390070 1.0000 120 chr3R:15457790-15457910 1.0000 120 chr2L:623634-623754 1.0000 120 chrX:5044589-5044709 1.0000 120 chr2L:5003165-5003285 1.0000 120 chr3R:17116333-17116453 1.0000 120 chr3R:18481178-18481298 1.0000 120 chr3L:6471973-6472093 1.0000 120 chr3L:1741259-1741379 1.0000 120 chr3L:3442209-3442329 1.0000 120 chrX:8730456-8730576 1.0000 120 chr3R:11614614-11614734 1.0000 120 chr2L:423294-423414 1.0000 120 chr3R:22205682-22205802 1.0000 120 chr3R:8272729-8272849 1.0000 120 chr3R:29538567-29538687 1.0000 120 chr3L:4619952-4620072 1.0000 120 chrX:1466279-1466399 1.0000 120 chr4:695251-695371 1.0000 120 chr2R:6147528-6147648 1.0000 120 chrX:6528648-6528768 1.0000 120 chr2L:13073110-13073230 1.0000 120 chr2L:5386408-5386528 1.0000 120 chr3L:6771311-6771431 1.0000 120 chr2L:8855616-8855736 1.0000 120 chr3L:13994496-13994616 1.0000 120 chr2R:16856822-16856942 1.0000 120 chrX:8762349-8762469 1.0000 120 chr2L:1668857-1668977 1.0000 120 chr2L:7376288-7376408 1.0000 120 chr2R:10599189-10599309 1.0000 120 chrX:2452868-2452988 1.0000 120 chr4:1268714-1268834 1.0000 120 chr3L:3339818-3339938 1.0000 120 chr2L:7973943-7974063 1.0000 120 chr2L:14651771-14651891 1.0000 120 chr2L:3844295-3844415 1.0000 120 chr3L:3350754-3350874 1.0000 120 chr3L:5633653-5633773 1.0000 120 chrX:12239580-12239700 1.0000 120 chr3R:4884029-4884149 1.0000 120 chrX:13394500-13394620 1.0000 120 chr2R:21313171-21313291 1.0000 120 chr3R:13955383-13955503 1.0000 120 chr3L:764442-764562 1.0000 120 chr3L:6446726-6446846 1.0000 120 chr3L:8157141-8157261 1.0000 120 chr3L:1388254-1388374 1.0000 120 chr3R:23337376-23337496 1.0000 120 chr3R:13931931-13932051 1.0000 120 chr2L:15386904-15387024 1.0000 120 chr2R:20136855-20136975 1.0000 120 chr3R:27171217-27171337 1.0000 120 chr2L:7992101-7992221 1.0000 120 chr3R:30811378-30811498 1.0000 120 chr3R:23148538-23148658 1.0000 120 chr3R:6812484-6812604 1.0000 120 chr3R:4873900-4874020 1.0000 120 chr3L:1457427-1457547 1.0000 120 chr3L:3240418-3240538 1.0000 120 chrX:8601300-8601420 1.0000 120 chr2L:1409816-1409936 1.0000 120 chr3R:31297100-31297220 1.0000 120 chrX:6021567-6021687 1.0000 120 chrX:1320501-1320621 1.0000 120 chr3R:10466447-10466567 1.0000 120 chr3L:11322605-11322725 1.0000 120 chr2R:19913883-19914003 1.0000 120 chrX:17760648-17760768 1.0000 120 chr3R:29550117-29550237 1.0000 120 chr2R:19849260-19849380 1.0000 120 chr3L:12616542-12616662 1.0000 120 chr2L:3554071-3554191 1.0000 120 chr3R:10579692-10579812 1.0000 120 chr3L:761824-761944 1.0000 120 chrX:15511470-15511590 1.0000 120 chr3R:8893114-8893234 1.0000 120 chr3R:22628037-22628157 1.0000 120 chr3R:6397842-6397962 1.0000 120 chr3R:13372102-13372222 1.0000 120 chr2L:18628270-18628390 1.0000 120 chr2L:11220975-11221095 1.0000 120 chr2L:7323138-7323258 1.0000 120 chr2L:19570904-19571024 1.0000 120 chr2R:11183225-11183345 1.0000 120 chr3R:13934729-13934849 1.0000 120 chr2R:11551106-11551226 1.0000 120 chrX:19164894-19165014 1.0000 120 chr3L:15977695-15977815 1.0000 120 chrX:11550170-11550290 1.0000 120 chr3L:758746-758866 1.0000 120 chr3R:25633978-25634098 1.0000 120 chr3R:18669849-18669969 1.0000 120 chr2R:14975263-14975383 1.0000 120 chr2L:18678443-18678563 1.0000 120 chr3R:31308993-31309113 1.0000 120 chr3L:21972427-21972547 1.0000 120 chr2L:5428976-5429096 1.0000 120 chr3R:30171540-30171660 1.0000 120 chrX:18320244-18320364 1.0000 120 chrX:17490009-17490129 1.0000 120 chr2R:11183434-11183554 1.0000 120 chr2L:11222243-11222363 1.0000 120 chr3L:907863-907983 1.0000 120 chrX:14134072-14134192 1.0000 120 chr3R:9675114-9675234 1.0000 120 chr3R:5100473-5100593 1.0000 120 chr2R:16685717-16685837 1.0000 120 chr2L:5972181-5972301 1.0000 120 chrX:3060217-3060337 1.0000 120 chr2R:6147728-6147848 1.0000 120 chrX:2648132-2648252 1.0000 120 chr2L:382887-383007 1.0000 120 chr2R:14973091-14973211 1.0000 120 chrX:779492-779612 1.0000 120 chr3L:728029-728149 1.0000 120 chr2R:24629558-24629678 1.0000 120 chr3L:388312-388432 1.0000 120 chr3R:18742493-18742613 1.0000 120 chr2R:23668812-23668932 1.0000 120 chr3R:19283716-19283836 1.0000 120 chr2L:11306244-11306364 1.0000 120 chrX:7892673-7892793 1.0000 120 chr3R:26235168-26235288 1.0000 120 chr2L:19905333-19905453 1.0000 120 chr2R:23022695-23022815 1.0000 120 chr3R:21648570-21648690 1.0000 120 chrX:5026201-5026321 1.0000 120 chr3L:2533822-2533942 1.0000 120 chr3L:2386612-2386732 1.0000 120 chrX:6642980-6643100 1.0000 120 chr2L:19454501-19454621 1.0000 120 chr3L:14055379-14055499 1.0000 120 chr3L:16037844-16037964 1.0000 120 chr3R:23888786-23888906 1.0000 120 chr3R:6950216-6950336 1.0000 120 chr2L:11399632-11399752 1.0000 120 chr3L:660466-660586 1.0000 120 chr3L:664008-664128 1.0000 120 chr3R:5103750-5103870 1.0000 120 chrX:8273904-8274024 1.0000 120 chr2R:6556910-6557030 1.0000 120 chr3L:817841-817961 1.0000 120 chrX:9892999-9893119 1.0000 120 chr2L:634360-634480 1.0000 120 chrX:3381130-3381250 1.0000 120 chr2R:14247581-14247701 1.0000 120 chr2L:10615926-10616046 1.0000 120 chr3L:16183191-16183311 1.0000 120 chr2R:24548127-24548247 1.0000 120 chr2R:19647717-19647837 1.0000 120 chr2R:24955806-24955926 1.0000 120 chr3R:14918330-14918450 1.0000 120 chrX:16102499-16102619 1.0000 120 chr2L:5249928-5250048 1.0000 120 chr2R:6994761-6994881 1.0000 120 chr2R:19969852-19969972 1.0000 120 chr3L:20549440-20549560 1.0000 120 chr3L:18241023-18241143 1.0000 120 chr3L:20518256-20518376 1.0000 120 chr3R:31225138-31225258 1.0000 120 chr2L:18003115-18003235 1.0000 120 chr3R:23297622-23297742 1.0000 120 chr3L:18198827-18198947 1.0000 120 chrX:17571028-17571148 1.0000 120 chr3R:13841045-13841165 1.0000 120 chr3L:13021863-13021983 1.0000 120 chr3L:14083345-14083465 1.0000 120 chr3L:1031037-1031157 1.0000 120 chr3R:5065144-5065264 1.0000 120 chrX:3411959-3412079 1.0000 120 chr3R:14765457-14765577 1.0000 120 chr3R:11947234-11947354 1.0000 120 chr3R:29096046-29096166 1.0000 120 chr2L:18150417-18150537 1.0000 120 chr3R:23872968-23873088 1.0000 120 chr3L:5863126-5863246 1.0000 120 chr2R:6132373-6132493 1.0000 120 chr2R:14009470-14009590 1.0000 120 chr2R:16156424-16156544 1.0000 120 chr2L:7909347-7909467 1.0000 120 chr3L:12270015-12270135 1.0000 120 chr3L:1336482-1336602 1.0000 120 chr3L:6871435-6871555 1.0000 120 chr3R:26507989-26508109 1.0000 120 chr3R:17501262-17501382 1.0000 120 chr3L:6285546-6285666 1.0000 120 chr2R:11640024-11640144 1.0000 120 chr3L:9742464-9742584 1.0000 120 chr2L:5501443-5501563 1.0000 120 chr2L:17749106-17749226 1.0000 120 chrX:5786623-5786743 1.0000 120 chr2L:11044816-11044936 1.0000 120 chr2L:10276950-10277070 1.0000 120 chr3L:16796798-16796918 1.0000 120 chr2R:18811984-18812104 1.0000 120 chr3R:22175841-22175961 1.0000 120 chr2L:19162913-19163033 1.0000 120 chrX:5923252-5923372 1.0000 120 chr3L:12410923-12411043 1.0000 120 chr2R:13935312-13935432 1.0000 120 chr3R:30280449-30280569 1.0000 120 chr2R:8650577-8650697 1.0000 120 chrX:7526252-7526372 1.0000 120 chr3R:23486895-23487015 1.0000 120 chr2L:6165851-6165971 1.0000 120 chrX:1826269-1826389 1.0000 120 chr3L:8763290-8763410 1.0000 120 chr2L:5493038-5493158 1.0000 120 chr3L:16024735-16024855 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ey/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ey.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.337 C 0.164 G 0.165 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.337 C 0.164 G 0.165 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KCAGTGCA MEME-1 width = 8 sites = 20 llr = 188 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9::::9 pos.-specific C :8::::91 probability G 621a:a2: matrix T 5:1:a::1 bits 2.6 * * 2.3 * * 2.1 * ** 1.8 * * ** Relative 1.6 * **** Entropy 1.3 * **** (13.6 bits) 1.0 ** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGTGCA consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18742493-18742613 90 4.58e-06 TCCAATTTTT GCAGTGCA CCTGTGCAGA chr2L:382887-383007 26 4.58e-06 TGAACCACTT GCAGTGCA CTTAAACAAA chrX:12239580-12239700 111 4.58e-06 CACTACTAAT GCAGTGCA TA chr3L:5863126-5863246 107 1.39e-05 TGCATTTTTC TCAGTGCA TAAGCT chr3R:19283716-19283836 43 1.39e-05 CACTATTTCC TCAGTGCA TAAAATCAAA chr3R:31308993-31309113 111 1.39e-05 TCAATTTCTT TCAGTGCA CA chr3L:8157141-8157261 47 1.39e-05 CATACATAAA TCAGTGCA TCGTAAATTT chr2L:14651771-14651891 86 1.39e-05 GTAATTTTTC TCAGTGCA ATCGCTCGAT chrX:2196201-2196321 77 1.85e-05 AGCCAGAACA GGAGTGCA ATCTAATCCC chrX:2648132-2648252 1 2.31e-05 . GCAGTGGA GCCAAAGTCC chr2R:16818809-16818929 3 2.31e-05 CT GCAGTGGA ATCCTATTGA chr2R:13935312-13935432 72 3.66e-05 AAAAAATTCT GCAGTGCT ATTCATATGT chr2R:19969852-19969972 7 3.66e-05 TCTTTC GCTGTGCA AAATGTATAT chrX:6021567-6021687 10 3.66e-05 CGATGATGG GCAGTGCT AAGGAGTCGG chr3L:21594551-21594671 2 3.66e-05 A GCGGTGCA CTGTCCCGCT chr3L:664008-664128 2 4.60e-05 A TGAGTGCA ACCGCCACGA chr3L:758746-758866 82 4.60e-05 TTCGCTTTTC TGAGTGCA GCGTACTCAG chr2R:24548127-24548247 60 5.53e-05 TCACCTCAAG TCAGTGGA CTCTTTTGGC chr2L:1409816-1409936 91 8.74e-05 GTTAAAGCAC TCTGTGCA TCTTATATAC chr2R:6132373-6132493 41 1.01e-04 TAAATCGGAA GGAGTGCC ACAACTTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18742493-18742613 4.6e-06 89_[+1]_23 chr2L:382887-383007 4.6e-06 25_[+1]_87 chrX:12239580-12239700 4.6e-06 110_[+1]_2 chr3L:5863126-5863246 1.4e-05 106_[+1]_6 chr3R:19283716-19283836 1.4e-05 42_[+1]_70 chr3R:31308993-31309113 1.4e-05 110_[+1]_2 chr3L:8157141-8157261 1.4e-05 46_[+1]_66 chr2L:14651771-14651891 1.4e-05 85_[+1]_27 chrX:2196201-2196321 1.8e-05 76_[+1]_36 chrX:2648132-2648252 2.3e-05 [+1]_112 chr2R:16818809-16818929 2.3e-05 2_[+1]_110 chr2R:13935312-13935432 3.7e-05 71_[+1]_41 chr2R:19969852-19969972 3.7e-05 6_[+1]_106 chrX:6021567-6021687 3.7e-05 9_[+1]_103 chr3L:21594551-21594671 3.7e-05 1_[+1]_111 chr3L:664008-664128 4.6e-05 1_[+1]_111 chr3L:758746-758866 4.6e-05 81_[+1]_31 chr2R:24548127-24548247 5.5e-05 59_[+1]_53 chr2L:1409816-1409936 8.7e-05 90_[+1]_22 chr2R:6132373-6132493 0.0001 40_[+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCAGTGCA width=8 seqs=20 chr3R:18742493-18742613 ( 90) GCAGTGCA 1 chr2L:382887-383007 ( 26) GCAGTGCA 1 chrX:12239580-12239700 ( 111) GCAGTGCA 1 chr3L:5863126-5863246 ( 107) TCAGTGCA 1 chr3R:19283716-19283836 ( 43) TCAGTGCA 1 chr3R:31308993-31309113 ( 111) TCAGTGCA 1 chr3L:8157141-8157261 ( 47) TCAGTGCA 1 chr2L:14651771-14651891 ( 86) TCAGTGCA 1 chrX:2196201-2196321 ( 77) GGAGTGCA 1 chrX:2648132-2648252 ( 1) GCAGTGGA 1 chr2R:16818809-16818929 ( 3) GCAGTGGA 1 chr2R:13935312-13935432 ( 72) GCAGTGCT 1 chr2R:19969852-19969972 ( 7) GCTGTGCA 1 chrX:6021567-6021687 ( 10) GCAGTGCT 1 chr3L:21594551-21594671 ( 2) GCGGTGCA 1 chr3L:664008-664128 ( 2) TGAGTGCA 1 chr3L:758746-758866 ( 82) TGAGTGCA 1 chr2R:24548127-24548247 ( 60) TCAGTGGA 1 chr2L:1409816-1409936 ( 91) TCTGTGCA 1 chr2R:6132373-6132493 ( 41) GGAGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 1.6e+003 -1097 -1097 174 43 -1097 229 28 -1097 133 -1097 -172 -174 -1097 -1097 260 -1097 -1097 -1097 -1097 158 -1097 -1097 260 -1097 -1097 237 -14 -1097 133 -171 -1097 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.6e+003 0.000000 0.000000 0.550000 0.450000 0.000000 0.800000 0.200000 0.000000 0.850000 0.000000 0.050000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.850000 0.150000 0.000000 0.850000 0.050000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCAGTGCA MEME-1 regular expression -------------------------------------------------------------------------------- [GT][CG]AGTGCA -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF MGCCCCTG MEME-2 width = 8 sites = 10 llr = 107 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::13:2: pos.-specific C 6:a97a:1 probability G :a:::::9 matrix T ::::::8: bits 2.6 ** * 2.3 ** * 2.1 *** * * 1.8 *** * * Relative 1.6 *** * * Entropy 1.3 ****** * (15.5 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCCCTG consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21313171-21313291 100 1.08e-06 CGTTAGCCGA CGCCCCTG TGTGCAAATT chr3R:20765833-20765953 103 1.08e-06 TCCAACTCTA CGCCCCTG GCTGTTATGA chr2R:23668812-23668932 22 3.30e-06 ACTGACCGGG AGCCCCTG CTAATCCGCT chr2L:5084744-5084864 8 4.38e-06 ACCCCCC CGCCCCAG CGAACAGTTG chr3R:19603138-19603258 53 6.60e-06 CTTATAACGT CGCCACTG ATATCTCCGT chrX:8601300-8601420 14 7.67e-06 ATTAGTTTAA CGCCCCTC CTAATATTTT chr2L:11395783-11395903 93 9.91e-06 AATAAACTCA AGCCCCAG TATTGGAGTA chrX:18320244-18320364 32 1.45e-05 CATGGCAACA AGCCACTG AACTAAGGGG chr2L:5428976-5429096 65 1.45e-05 GCAGCCACTA AGCCACTG GTCTCAAGTC chr2R:13935312-13935432 91 1.89e-05 TTCATATGTC CGCACCTG TTTAGCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21313171-21313291 1.1e-06 99_[+2]_13 chr3R:20765833-20765953 1.1e-06 102_[+2]_10 chr2R:23668812-23668932 3.3e-06 21_[+2]_91 chr2L:5084744-5084864 4.4e-06 7_[+2]_105 chr3R:19603138-19603258 6.6e-06 52_[+2]_60 chrX:8601300-8601420 7.7e-06 13_[+2]_99 chr2L:11395783-11395903 9.9e-06 92_[+2]_20 chrX:18320244-18320364 1.4e-05 31_[+2]_81 chr2L:5428976-5429096 1.4e-05 64_[+2]_48 chr2R:13935312-13935432 1.9e-05 90_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MGCCCCTG width=8 seqs=10 chr2R:21313171-21313291 ( 100) CGCCCCTG 1 chr3R:20765833-20765953 ( 103) CGCCCCTG 1 chr2R:23668812-23668932 ( 22) AGCCCCTG 1 chr2L:5084744-5084864 ( 8) CGCCCCAG 1 chr3R:19603138-19603258 ( 53) CGCCACTG 1 chrX:8601300-8601420 ( 14) CGCCCCTC 1 chr2L:11395783-11395903 ( 93) AGCCCCAG 1 chrX:18320244-18320364 ( 32) AGCCACTG 1 chr2L:5428976-5429096 ( 65) AGCCACTG 1 chr2R:13935312-13935432 ( 91) CGCACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.2e+003 25 187 -997 -997 -997 -997 260 -997 -997 261 -997 -997 -175 245 -997 -997 -17 209 -997 -997 -997 261 -997 -997 -75 -997 -997 126 -997 -71 245 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e+003 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.100000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCCCCTG MEME-2 regular expression -------------------------------------------------------------------------------- [CA]GCC[CA]C[TA]G -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGGCG MEME-3 width = 8 sites = 2 llr = 27 E-value = 3.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::::a: probability G aaa:aa:a matrix T :::a:::: bits 2.6 *** **** 2.3 *** **** 2.1 *** **** 1.8 *** **** Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGTGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13841045-13841165 2 1.11e-06 C GGGTGGCG AGGGGATGTC chr2R:16856822-16856942 69 1.11e-06 GTTACTGCGG GGGTGGCG AAAGCCGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13841045-13841165 1.1e-06 1_[+3]_111 chr2R:16856822-16856942 1.1e-06 68_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGGCG width=8 seqs=2 chr3R:13841045-13841165 ( 2) GGGTGGCG 1 chr2R:16856822-16856942 ( 69) GGGTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 3.0e+004 -765 -765 259 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 -765 158 -765 -765 259 -765 -765 -765 259 -765 -765 260 -765 -765 -765 -765 259 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGCG MEME-3 regular expression -------------------------------------------------------------------------------- GGGTGGCG -------------------------------------------------------------------------------- Time 19.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCAC MEME-4 width = 8 sites = 9 llr = 97 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1::::9: pos.-specific C ::9:18:9 probability G a9199111 matrix T :::1:1:: bits 2.6 * 2.3 * 2.1 ***** * 1.8 ***** * Relative 1.6 ****** * Entropy 1.3 ******** (15.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8763290-8763410 16 1.10e-06 CGCTTTGATC GGCGGCAC ATAATACAAC chrX:6030153-6030273 29 1.64e-06 AATCGAATAA GGCGGCGC GTCAATGATG chr3R:18669849-18669969 34 2.75e-06 GAACATCAAA GGCGGGAC ATTTAAAAGA chr2R:21313171-21313291 13 3.84e-06 TTCTCACGTA GGCGCCAC ATGTCAATAG chrX:1320501-1320621 5 6.06e-06 AGCT GGCGGCAG CATCTCTTAT chr2R:16856822-16856942 85 6.06e-06 CGAAAGCCGT GGGGGCAC AGCCGGAAAG chr2R:6556910-6557030 14 8.31e-06 GTAATTTAAT GGCGGTAC CTTTGACGAA chr2L:10615926-10616046 3 1.28e-05 GA GACGGCAC TTATCCACCT chr2L:650984-651104 15 1.28e-05 AACGAAGGAA GGCTGCAC TGAAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8763290-8763410 1.1e-06 15_[+4]_97 chrX:6030153-6030273 1.6e-06 28_[+4]_84 chr3R:18669849-18669969 2.7e-06 33_[+4]_79 chr2R:21313171-21313291 3.8e-06 12_[+4]_100 chrX:1320501-1320621 6.1e-06 4_[+4]_108 chr2R:16856822-16856942 6.1e-06 84_[+4]_28 chr2R:6556910-6557030 8.3e-06 13_[+4]_99 chr2L:10615926-10616046 1.3e-05 2_[+4]_110 chr2L:650984-651104 1.3e-05 14_[+4]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCAC width=8 seqs=9 chr3L:8763290-8763410 ( 16) GGCGGCAC 1 chrX:6030153-6030273 ( 29) GGCGGCGC 1 chr3R:18669849-18669969 ( 34) GGCGGGAC 1 chr2R:21313171-21313291 ( 13) GGCGCCAC 1 chrX:1320501-1320621 ( 5) GGCGGCAG 1 chr2R:16856822-16856942 ( 85) GGGGGCAC 1 chr2R:6556910-6557030 ( 14) GGCGGTAC 1 chr2L:10615926-10616046 ( 3) GACGGCAC 1 chr2L:650984-651104 ( 15) GGCTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.3e+003 -982 -982 260 -982 -160 -982 243 -982 -982 244 -57 -982 -982 -982 243 -158 -982 -56 243 -982 -982 224 -57 -158 140 -982 -57 -982 -982 244 -57 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.3e+003 0.000000 0.000000 1.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.111111 0.888889 0.000000 0.000000 0.777778 0.111111 0.111111 0.888889 0.000000 0.111111 0.000000 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCAC MEME-4 regular expression -------------------------------------------------------------------------------- GGCGGCAC -------------------------------------------------------------------------------- Time 26.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCACCCC MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :aa:aaaa probability G :::::::: matrix T a::::::: bits 2.6 ** **** 2.3 ** **** 2.1 ** **** 1.8 ** **** Relative 1.6 ******** Entropy 1.3 ******** (18.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCCACCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5863126-5863246 82 2.19e-06 TATTCAGAAA TCCACCCC AAATGGCTGC chr3R:20765833-20765953 78 2.19e-06 CTGCATGGCC TCCACCCC CCCTGCATCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5863126-5863246 2.2e-06 81_[+5]_31 chr3R:20765833-20765953 2.2e-06 77_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCACCCC width=8 seqs=2 chr3L:5863126-5863246 ( 82) TCCACCCC 1 chr3R:20765833-20765953 ( 78) TCCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.4e+004 -765 -765 -765 158 -765 260 -765 -765 -765 260 -765 -765 156 -765 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCACCCC MEME-5 regular expression -------------------------------------------------------------------------------- TCCACCCC -------------------------------------------------------------------------------- Time 32.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6144397-6144517 8.76e-01 120 chr3R:29283353-29283473 4.63e-02 120 chrX:2196201-2196321 4.13e-02 76_[+1(1.85e-05)]_36 chr2L:5084744-5084864 4.10e-03 7_[+2(4.38e-06)]_105 chrX:8667868-8667988 8.16e-01 120 chr3L:3246911-3247031 9.96e-01 120 chr2L:10972338-10972458 8.26e-01 120 chr3R:27092335-27092455 2.50e-01 120 chrX:8469188-8469308 4.44e-01 120 chr3R:29076127-29076247 6.78e-01 120 chr3L:17506140-17506260 8.00e-01 120 chr3R:20765833-20765953 5.57e-06 19_[+2(5.15e-05)]_50_[+5(2.19e-06)]_\ 17_[+2(1.08e-06)]_10 chr2L:18843732-18843852 2.08e-01 120 chr2R:18698846-18698966 7.64e-01 120 chr3R:8142236-8142356 7.02e-01 120 chr2R:6693157-6693277 1.85e-01 112_[+5(7.78e-05)] chr3L:8368786-8368906 4.78e-01 120 chr2L:11328485-11328605 9.70e-01 120 chr3R:5331866-5331986 4.80e-01 120 chrX:14750600-14750720 9.79e-01 120 chr3L:3544396-3544516 1.00e+00 120 chr2R:16818809-16818929 2.61e-01 2_[+1(2.31e-05)]_110 chr2L:650984-651104 1.23e-02 14_[+4(1.28e-05)]_98 chr3L:7792365-7792485 7.14e-01 120 chr3R:19603138-19603258 1.85e-02 52_[+2(6.60e-06)]_60 chr3L:14350257-14350377 1.92e-01 120 chr3L:18038318-18038438 9.96e-01 120 chr2R:24836783-24836903 8.76e-01 120 chr2L:11395783-11395903 4.26e-02 92_[+2(9.91e-06)]_20 chr3L:6809567-6809687 9.89e-01 120 chr3R:11859644-11859764 1.76e-02 120 chr3R:30281379-30281499 9.98e-01 120 chrX:6030153-6030273 6.57e-04 28_[+4(1.64e-06)]_84 chrX:13539610-13539730 6.09e-01 120 chrX:17814928-17815048 9.99e-01 120 chr3L:21594551-21594671 1.44e-02 1_[+1(3.66e-05)]_111 chr3R:31956397-31956517 1.91e-01 120 chr3R:9612386-9612506 3.52e-01 120 chrX:13541318-13541438 6.78e-03 120 chr3R:15566473-15566593 6.67e-01 120 chrX:3389950-3390070 6.52e-01 120 chr3R:15457790-15457910 3.07e-01 120 chr2L:623634-623754 8.80e-01 120 chrX:5044589-5044709 1.63e-01 87_[+2(7.92e-05)]_25 chr2L:5003165-5003285 9.79e-01 120 chr3R:17116333-17116453 5.04e-01 120 chr3R:18481178-18481298 1.00e+00 120 chr3L:6471973-6472093 9.05e-01 120 chr3L:1741259-1741379 9.04e-01 120 chr3L:3442209-3442329 9.92e-01 120 chrX:8730456-8730576 9.91e-01 120 chr3R:11614614-11614734 5.00e-01 120 chr2L:423294-423414 5.91e-01 120 chr3R:22205682-22205802 3.27e-01 120 chr3R:8272729-8272849 5.03e-01 120 chr3R:29538567-29538687 9.80e-01 120 chr3L:4619952-4620072 7.94e-01 120 chrX:1466279-1466399 9.06e-01 120 chr4:695251-695371 6.78e-02 120 chr2R:6147528-6147648 3.43e-01 120 chrX:6528648-6528768 9.77e-01 120 chr2L:13073110-13073230 2.28e-01 120 chr2L:5386408-5386528 6.43e-01 120 chr3L:6771311-6771431 2.33e-01 120 chr2L:8855616-8855736 6.64e-01 120 chr3L:13994496-13994616 9.97e-01 120 chr2R:16856822-16856942 3.06e-06 68_[+3(1.11e-06)]_8_[+4(6.06e-06)]_\ 28 chrX:8762349-8762469 6.59e-01 120 chr2L:1668857-1668977 3.23e-01 120 chr2L:7376288-7376408 3.24e-01 120 chr2R:10599189-10599309 3.55e-01 120 chrX:2452868-2452988 7.37e-02 120 chr4:1268714-1268834 5.33e-01 120 chr3L:3339818-3339938 5.32e-01 120 chr2L:7973943-7974063 9.40e-01 120 chr2L:14651771-14651891 6.16e-03 85_[+1(1.39e-05)]_27 chr2L:3844295-3844415 8.60e-01 120 chr3L:3350754-3350874 3.07e-01 93_[+2(9.54e-05)]_19 chr3L:5633653-5633773 3.87e-01 120 chrX:12239580-12239700 2.95e-02 110_[+1(4.58e-06)]_2 chr3R:4884029-4884149 4.16e-01 120 chrX:13394500-13394620 1.14e-01 120 chr2R:21313171-21313291 1.54e-07 12_[+4(3.84e-06)]_79_[+2(1.08e-06)]_\ 13 chr3R:13955383-13955503 7.91e-01 120 chr3L:764442-764562 3.20e-01 120 chr3L:6446726-6446846 8.70e-01 120 chr3L:8157141-8157261 6.92e-02 46_[+1(1.39e-05)]_66 chr3L:1388254-1388374 7.51e-01 120 chr3R:23337376-23337496 9.98e-01 120 chr3R:13931931-13932051 3.08e-01 120 chr2L:15386904-15387024 8.98e-02 108_[+4(6.66e-05)]_4 chr2R:20136855-20136975 6.84e-01 120 chr3R:27171217-27171337 8.53e-01 120 chr2L:7992101-7992221 3.35e-01 120 chr3R:30811378-30811498 5.48e-01 120 chr3R:23148538-23148658 5.60e-05 2_[+5(1.09e-05)]_48_[+3(4.25e-05)]_\ 54 chr3R:6812484-6812604 2.26e-02 120 chr3R:4873900-4874020 3.34e-01 120 chr3L:1457427-1457547 4.94e-01 120 chr3L:3240418-3240538 9.48e-01 120 chrX:8601300-8601420 1.79e-03 13_[+2(7.67e-06)]_99 chr2L:1409816-1409936 2.17e-01 90_[+1(8.74e-05)]_22 chr3R:31297100-31297220 4.62e-01 120 chrX:6021567-6021687 2.31e-02 9_[+1(3.66e-05)]_103 chrX:1320501-1320621 2.08e-03 4_[+4(6.06e-06)]_108 chr3R:10466447-10466567 7.74e-01 120 chr3L:11322605-11322725 5.97e-01 120 chr2R:19913883-19914003 7.80e-01 120 chrX:17760648-17760768 7.22e-02 120 chr3R:29550117-29550237 2.40e-01 120 chr2R:19849260-19849380 9.65e-01 120 chr3L:12616542-12616662 8.94e-01 120 chr2L:3554071-3554191 3.79e-01 120 chr3R:10579692-10579812 8.53e-01 120 chr3L:761824-761944 5.06e-01 120 chrX:15511470-15511590 1.01e-01 120 chr3R:8893114-8893234 4.95e-01 120 chr3R:22628037-22628157 9.54e-01 120 chr3R:6397842-6397962 8.44e-01 120 chr3R:13372102-13372222 8.90e-01 120 chr2L:18628270-18628390 7.61e-01 120 chr2L:11220975-11221095 3.68e-01 120 chr2L:7323138-7323258 6.11e-02 120 chr2L:19570904-19571024 3.55e-01 120 chr2R:11183225-11183345 8.62e-01 120 chr3R:13934729-13934849 9.56e-01 120 chr2R:11551106-11551226 4.99e-02 22_[+1(8.74e-05)]_90 chrX:19164894-19165014 2.26e-01 120 chr3L:15977695-15977815 7.68e-01 120 chrX:11550170-11550290 9.91e-01 120 chr3L:758746-758866 2.59e-02 81_[+1(4.60e-05)]_31 chr3R:25633978-25634098 4.37e-01 120 chr3R:18669849-18669969 5.27e-02 33_[+4(2.75e-06)]_79 chr2R:14975263-14975383 1.55e-01 120 chr2L:18678443-18678563 9.70e-01 120 chr3R:31308993-31309113 3.30e-02 110_[+1(1.39e-05)]_2 chr3L:21972427-21972547 1.81e-01 120 chr2L:5428976-5429096 2.49e-03 64_[+2(1.45e-05)]_48 chr3R:30171540-30171660 8.14e-01 120 chrX:18320244-18320364 2.10e-02 31_[+2(1.45e-05)]_81 chrX:17490009-17490129 9.51e-01 120 chr2R:11183434-11183554 6.00e-01 120 chr2L:11222243-11222363 2.81e-01 120 chr3L:907863-907983 5.09e-03 107_[+3(4.25e-05)]_5 chrX:14134072-14134192 7.79e-01 120 chr3R:9675114-9675234 9.46e-01 120 chr3R:5100473-5100593 9.39e-01 120 chr2R:16685717-16685837 3.33e-01 120 chr2L:5972181-5972301 2.34e-01 120 chrX:3060217-3060337 3.83e-01 120 chr2R:6147728-6147848 1.00e+00 120 chrX:2648132-2648252 6.71e-03 [+1(2.31e-05)]_112 chr2L:382887-383007 5.48e-03 25_[+1(4.58e-06)]_87 chr2R:14973091-14973211 2.96e-01 120 chrX:779492-779612 7.70e-01 120 chr3L:728029-728149 2.08e-01 120 chr2R:24629558-24629678 8.55e-02 120 chr3L:388312-388432 3.76e-01 120 chr3R:18742493-18742613 6.12e-03 89_[+1(4.58e-06)]_23 chr2R:23668812-23668932 1.44e-04 21_[+2(3.30e-06)]_91 chr3R:19283716-19283836 1.01e-02 42_[+1(1.39e-05)]_70 chr2L:11306244-11306364 4.89e-01 120 chrX:7892673-7892793 9.72e-01 120 chr3R:26235168-26235288 9.35e-01 120 chr2L:19905333-19905453 8.31e-01 120 chr2R:23022695-23022815 9.94e-01 120 chr3R:21648570-21648690 8.80e-01 120 chrX:5026201-5026321 9.81e-01 120 chr3L:2533822-2533942 8.65e-01 120 chr3L:2386612-2386732 6.25e-01 120 chrX:6642980-6643100 7.65e-01 120 chr2L:19454501-19454621 9.95e-01 120 chr3L:14055379-14055499 1.00e+00 120 chr3L:16037844-16037964 2.15e-02 120 chr3R:23888786-23888906 7.56e-01 120 chr3R:6950216-6950336 2.01e-01 120 chr2L:11399632-11399752 9.93e-01 120 chr3L:660466-660586 1.65e-01 120 chr3L:664008-664128 1.95e-02 1_[+1(4.60e-05)]_111 chr3R:5103750-5103870 8.53e-01 120 chrX:8273904-8274024 4.80e-04 120 chr2R:6556910-6557030 3.49e-02 13_[+4(8.31e-06)]_99 chr3L:817841-817961 3.19e-01 120 chrX:9892999-9893119 3.68e-01 120 chr2L:634360-634480 2.76e-01 120 chrX:3381130-3381250 9.81e-01 120 chr2R:14247581-14247701 7.20e-01 120 chr2L:10615926-10616046 2.31e-02 2_[+4(1.28e-05)]_110 chr3L:16183191-16183311 9.82e-01 120 chr2R:24548127-24548247 5.98e-02 59_[+1(5.53e-05)]_53 chr2R:19647717-19647837 9.62e-01 120 chr2R:24955806-24955926 3.16e-02 40_[+3(4.25e-05)]_72 chr3R:14918330-14918450 9.87e-01 120 chrX:16102499-16102619 2.78e-01 120 chr2L:5249928-5250048 8.19e-02 120 chr2R:6994761-6994881 8.58e-01 120 chr2R:19969852-19969972 4.38e-02 6_[+1(3.66e-05)]_106 chr3L:20549440-20549560 8.33e-01 120 chr3L:18241023-18241143 9.75e-01 120 chr3L:20518256-20518376 8.26e-01 120 chr3R:31225138-31225258 8.25e-02 120 chr2L:18003115-18003235 9.59e-01 120 chr3R:23297622-23297742 9.97e-01 120 chr3L:18198827-18198947 4.66e-01 120 chrX:17571028-17571148 3.13e-01 60_[+2(6.55e-05)]_52 chr3R:13841045-13841165 4.54e-04 1_[+3(1.11e-06)]_111 chr3L:13021863-13021983 9.67e-01 120 chr3L:14083345-14083465 3.53e-01 120 chr3L:1031037-1031157 7.88e-02 90_[+5(7.78e-05)]_22 chr3R:5065144-5065264 5.13e-02 120 chrX:3411959-3412079 4.16e-01 120 chr3R:14765457-14765577 4.92e-01 120 chr3R:11947234-11947354 7.30e-01 120 chr3R:29096046-29096166 9.90e-01 120 chr2L:18150417-18150537 5.85e-01 120 chr3R:23872968-23873088 1.28e-01 120 chr3L:5863126-5863246 5.58e-05 81_[+5(2.19e-06)]_17_[+1(1.39e-05)]_\ 6 chr2R:6132373-6132493 5.39e-02 120 chr2R:14009470-14009590 7.50e-01 120 chr2R:16156424-16156544 5.49e-01 120 chr2L:7909347-7909467 9.28e-01 120 chr3L:12270015-12270135 7.43e-01 120 chr3L:1336482-1336602 1.52e-01 120 chr3L:6871435-6871555 2.15e-02 120 chr3R:26507989-26508109 7.77e-01 120 chr3R:17501262-17501382 8.57e-01 120 chr3L:6285546-6285666 8.96e-03 120 chr2R:11640024-11640144 6.62e-01 120 chr3L:9742464-9742584 7.71e-01 120 chr2L:5501443-5501563 3.71e-01 120 chr2L:17749106-17749226 9.93e-01 120 chrX:5786623-5786743 2.06e-01 120 chr2L:11044816-11044936 9.46e-01 120 chr2L:10276950-10277070 5.46e-01 120 chr3L:16796798-16796918 9.95e-01 120 chr2R:18811984-18812104 9.11e-01 120 chr3R:22175841-22175961 9.35e-01 120 chr2L:19162913-19163033 7.90e-02 120 chrX:5923252-5923372 9.72e-01 120 chr3L:12410923-12411043 8.90e-01 120 chr2R:13935312-13935432 2.85e-04 71_[+1(3.66e-05)]_11_[+2(1.89e-05)]_\ 22 chr3R:30280449-30280569 6.19e-01 120 chr2R:8650577-8650697 9.25e-01 120 chrX:7526252-7526372 7.87e-01 120 chr3R:23486895-23487015 8.44e-01 120 chr2L:6165851-6165971 5.59e-01 120 chrX:1826269-1826389 8.30e-01 120 chr3L:8763290-8763410 1.68e-03 15_[+4(1.10e-06)]_97 chr2L:5493038-5493158 6.03e-01 120 chr3L:16024735-16024855 9.79e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************