******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/exex.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:20462530-20462650 1.0000 120 chrX:16674677-16674797 1.0000 120 chr2R:19434462-19434582 1.0000 120 chrX:6201598-6201718 1.0000 120 chr2L:8784870-8784990 1.0000 120 chr2L:5277748-5277868 1.0000 120 chr3L:21069587-21069707 1.0000 120 chrX:13818244-13818364 1.0000 120 chr2L:5337298-5337418 1.0000 120 chr2L:6426467-6426587 1.0000 120 chr3R:11247004-11247124 1.0000 120 chr3L:6033155-6033275 1.0000 120 chr2L:12453540-12453660 1.0000 120 chr2L:5791291-5791411 1.0000 120 chr2R:10079251-10079371 1.0000 120 chrX:18509569-18509689 1.0000 120 chr3R:17759071-17759191 1.0000 120 chr3L:7842256-7842376 1.0000 120 chr2L:13849264-13849384 1.0000 120 chr3R:21746026-21746146 1.0000 120 chr3L:6261382-6261502 1.0000 120 chr3R:16202496-16202616 1.0000 120 chrX:9102264-9102384 1.0000 120 chr2R:15941914-15942034 1.0000 120 chr2L:18115243-18115363 1.0000 120 chr3L:3547315-3547435 1.0000 120 chr3R:11168205-11168325 1.0000 120 chr2L:12444671-12444791 1.0000 120 chrX:18885469-18885589 1.0000 120 chr2R:21830236-21830356 1.0000 120 chr3L:10680317-10680437 1.0000 120 chr3R:26737129-26737249 1.0000 120 chr3L:7402105-7402225 1.0000 120 chr2R:18020096-18020216 1.0000 120 chr3L:6497334-6497454 1.0000 120 chr2R:14244634-14244754 1.0000 120 chr2L:9422120-9422240 1.0000 120 chrX:6691450-6691570 1.0000 120 chr2L:10848933-10849053 1.0000 120 chr3R:12739381-12739501 1.0000 120 chr3R:13298831-13298951 1.0000 120 chr3L:3758761-3758881 1.0000 120 chr2R:18051427-18051547 1.0000 120 chr3R:21242303-21242423 1.0000 120 chr2R:13011049-13011169 1.0000 120 chr2R:7534764-7534884 1.0000 120 chrX:10775072-10775192 1.0000 120 chr2L:3640714-3640834 1.0000 120 chr2R:14983718-14983838 1.0000 120 chrX:19502060-19502180 1.0000 120 chrX:5948944-5949064 1.0000 120 chr3R:22522135-22522255 1.0000 120 chr2L:16884834-16884954 1.0000 120 chr2R:15885115-15885235 1.0000 120 chr3R:20319117-20319237 1.0000 120 chr2L:8500117-8500237 1.0000 120 chr2L:20762957-20763077 1.0000 120 chr3L:7934327-7934447 1.0000 120 chr3R:27023558-27023678 1.0000 120 chrX:12773054-12773174 1.0000 120 chr3R:17137351-17137471 1.0000 120 chr3L:20354467-20354587 1.0000 120 chr2R:12323030-12323150 1.0000 120 chrX:17711593-17711713 1.0000 120 chr2L:8372371-8372491 1.0000 120 chr3R:25757686-25757806 1.0000 120 chrX:19227612-19227732 1.0000 120 chr3L:7944089-7944209 1.0000 120 chr2L:321246-321366 1.0000 120 chr3L:11622871-11622991 1.0000 120 chr2L:21170007-21170127 1.0000 120 chrX:16900936-16901056 1.0000 120 chr3L:11533553-11533673 1.0000 120 chr2R:23603581-23603701 1.0000 120 chrX:23012024-23012144 1.0000 120 chr2R:12377416-12377536 1.0000 120 chr3R:16190113-16190233 1.0000 120 chr3L:20220534-20220654 1.0000 120 chr2L:15609910-15610030 1.0000 120 chr2L:11739335-11739455 1.0000 120 chrX:10841327-10841447 1.0000 120 chr2L:2169558-2169678 1.0000 120 chr3L:22690108-22690228 1.0000 120 chr2R:13122930-13123050 1.0000 120 chr2L:18605698-18605818 1.0000 120 chr2R:10852378-10852498 1.0000 120 chr3R:25260830-25260950 1.0000 120 chr2R:19138427-19138547 1.0000 120 chrX:20934634-20934754 1.0000 120 chr2R:18054692-18054812 1.0000 120 chr2L:1641621-1641741 1.0000 120 chr2L:17420479-17420599 1.0000 120 chr3R:9498537-9498657 1.0000 120 chr2L:3361938-3362058 1.0000 120 chr3R:23343084-23343204 1.0000 120 chr3L:16655714-16655834 1.0000 120 chr2R:23609246-23609366 1.0000 120 chr2R:18058019-18058139 1.0000 120 chr2R:22078266-22078386 1.0000 120 chr3R:11461531-11461651 1.0000 120 chr3R:25899808-25899928 1.0000 120 chr3L:21283659-21283779 1.0000 120 chr2R:22246345-22246465 1.0000 120 chr3L:6933747-6933867 1.0000 120 chr3R:15975337-15975457 1.0000 120 chr2L:17389874-17389994 1.0000 120 chr2L:4835265-4835385 1.0000 120 chr3L:8691455-8691575 1.0000 120 chr2L:4998749-4998869 1.0000 120 chr3R:18227439-18227559 1.0000 120 chr3L:4551918-4552038 1.0000 120 chr3L:9767775-9767895 1.0000 120 chr3R:7216253-7216373 1.0000 120 chrX:9639723-9639843 1.0000 120 chr3L:5479571-5479691 1.0000 120 chr3L:9126382-9126502 1.0000 120 chr3R:9573068-9573188 1.0000 120 chr3R:14461436-14461556 1.0000 120 chr2R:8715312-8715432 1.0000 120 chr3L:11184841-11184961 1.0000 120 chr2R:9744676-9744796 1.0000 120 chr3L:20207079-20207199 1.0000 120 chr3R:23991486-23991606 1.0000 120 chr2R:12355469-12355589 1.0000 120 chrX:8879990-8880110 1.0000 120 chr3L:16671021-16671141 1.0000 120 chr2L:8949224-8949344 1.0000 120 chr3L:15517630-15517750 1.0000 120 chr3R:26735490-26735610 1.0000 120 chr2L:6870900-6871020 1.0000 120 chr2R:17761795-17761915 1.0000 120 chr3R:29681374-29681494 1.0000 120 chr2R:22599483-22599603 1.0000 120 chr3L:10097554-10097674 1.0000 120 chr3L:21204416-21204536 1.0000 120 chrX:9190924-9191044 1.0000 120 chr2L:2801901-2802021 1.0000 120 chrX:17581086-17581206 1.0000 120 chr2L:1709481-1709601 1.0000 120 chr3R:20602738-20602858 1.0000 120 chr2R:10079505-10079625 1.0000 120 chrX:19590715-19590835 1.0000 120 chr3R:16173623-16173743 1.0000 120 chrX:16439329-16439449 1.0000 120 chr3R:27002911-27003031 1.0000 120 chr2R:11790832-11790952 1.0000 120 chr2L:20374219-20374339 1.0000 120 chrX:13678109-13678229 1.0000 120 chr3R:12210603-12210723 1.0000 120 chr2L:1707102-1707222 1.0000 120 chr3L:16573232-16573352 1.0000 120 chr2L:8989872-8989992 1.0000 120 chrX:5948009-5948129 1.0000 120 chr3R:8518704-8518824 1.0000 120 chrX:3874305-3874425 1.0000 120 chr2R:21836592-21836712 1.0000 120 chr2R:22842612-22842732 1.0000 120 chr3R:16007656-16007776 1.0000 120 chr3L:22891183-22891303 1.0000 120 chr3R:23217271-23217391 1.0000 120 chr2L:8940816-8940936 1.0000 120 chr2L:14636375-14636495 1.0000 120 chr2R:17710885-17711005 1.0000 120 chr2R:18352403-18352523 1.0000 120 chr2R:21832460-21832580 1.0000 120 chrX:5410362-5410482 1.0000 120 chr2L:13850190-13850310 1.0000 120 chrX:16922758-16922878 1.0000 120 chr2L:16292-16412 1.0000 120 chrX:1176109-1176229 1.0000 120 chr3R:13783393-13783513 1.0000 120 chr2R:11337757-11337877 1.0000 120 chr3L:448427-448547 1.0000 120 chrX:21027262-21027382 1.0000 120 chr2L:5806005-5806125 1.0000 120 chrX:11424637-11424757 1.0000 120 chr3L:17482353-17482473 1.0000 120 chr3L:3421541-3421661 1.0000 120 chrX:15888898-15889018 1.0000 120 chrX:15766634-15766754 1.0000 120 chr3R:11982119-11982239 1.0000 120 chr2R:23070187-23070307 1.0000 120 chr2L:8983308-8983428 1.0000 120 chr3R:14710543-14710663 1.0000 120 chr2R:21642850-21642970 1.0000 120 chr2R:11718802-11718922 1.0000 120 chr3L:19812340-19812460 1.0000 120 chrX:3708012-3708132 1.0000 120 chr2R:12855583-12855703 1.0000 120 chr2L:9014222-9014342 1.0000 120 chrX:9596998-9597118 1.0000 120 chr2L:12701641-12701761 1.0000 120 chr3L:4255886-4256006 1.0000 120 chr3R:16155373-16155493 1.0000 120 chr3R:30428569-30428689 1.0000 120 chr2L:12708731-12708851 1.0000 120 chr2R:23717005-23717125 1.0000 120 chr2L:5798751-5798871 1.0000 120 chrX:12886628-12886748 1.0000 120 chr3L:9845558-9845678 1.0000 120 chrX:13563082-13563202 1.0000 120 chr3R:20544212-20544332 1.0000 120 chrX:2637802-2637922 1.0000 120 chr2L:4474149-4474269 1.0000 120 chr3L:11112933-11113053 1.0000 120 chr3L:4106781-4106901 1.0000 120 chr3R:16985273-16985393 1.0000 120 chrX:8490732-8490852 1.0000 120 chr3R:19873997-19874117 1.0000 120 chr2R:11430536-11430656 1.0000 120 chrX:11417661-11417781 1.0000 120 chrX:19592374-19592494 1.0000 120 chr3R:20511142-20511262 1.0000 120 chr2R:19385390-19385510 1.0000 120 chr2L:1121452-1121572 1.0000 120 chr3L:11290723-11290843 1.0000 120 chr3R:22520638-22520758 1.0000 120 chrX:8110010-8110130 1.0000 120 chr3R:29783428-29783548 1.0000 120 chr2R:17338340-17338460 1.0000 120 chr3R:31014446-31014566 1.0000 120 chr3L:16367831-16367951 1.0000 120 chrX:18486471-18486591 1.0000 120 chr2R:11356608-11356728 1.0000 120 chr3L:337288-337408 1.0000 120 chrX:5955296-5955416 1.0000 120 chrX:10747231-10747351 1.0000 120 chr3L:18638170-18638290 1.0000 120 chr2R:12359135-12359255 1.0000 120 chr2R:16592656-16592776 1.0000 120 chrX:16934588-16934708 1.0000 120 chr3R:5836674-5836794 1.0000 120 chr3L:10095471-10095591 1.0000 120 chr3R:12211716-12211836 1.0000 120 chr3R:9700759-9700879 1.0000 120 chrX:3875081-3875201 1.0000 120 chr2L:12590108-12590228 1.0000 120 chr3L:12074384-12074504 1.0000 120 chr3R:15891353-15891473 1.0000 120 chr3R:4446604-4446724 1.0000 120 chrX:16702369-16702489 1.0000 120 chr2R:11336626-11336746 1.0000 120 chr2R:12642566-12642686 1.0000 120 chr2L:6654783-6654903 1.0000 120 chr3R:30599543-30599663 1.0000 120 chr2R:18049889-18050009 1.0000 120 chrX:9662000-9662120 1.0000 120 chrX:15758997-15759117 1.0000 120 chr3L:11953877-11953997 1.0000 120 chr3R:27016722-27016842 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_exex/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/exex.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.317 C 0.177 G 0.181 T 0.325 Background letter frequencies (from file dataset with add-one prior applied): A 0.317 C 0.177 G 0.181 T 0.325 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTTATCR MEME-1 width = 8 sites = 84 llr = 661 E-value = 2.4e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::3a::4 pos.-specific C 1a::::a: probability G 2::::::4 matrix T 5:a7:a:2 bits 2.5 * * 2.3 * * 2.0 * * 1.8 * * * Relative 1.5 ** *** Entropy 1.3 ** *** (11.4 bits) 1.0 ** *** 0.8 ****** 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TCTTATCG consensus G A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9662000-9662120 44 2.01e-05 ATTAGCCAGA TCTTATCG CAGCAATTTG chr3R:4446604-4446724 60 2.01e-05 AAGACCACCT TCTTATCG TTTAACTACT chr3R:12211716-12211836 72 2.01e-05 TTTGTGGTAA TCTTATCG GGCTATGAAC chr3L:18638170-18638290 86 2.01e-05 ATCCCAGCCC TCTTATCG CCAATCAAAT chrX:5955296-5955416 46 2.01e-05 GGCACTGCAT TCTTATCG ATTCCCTTGG chr2L:1121452-1121572 68 2.01e-05 TTTATTTCAA TCTTATCG CTTGATTTAT chr3L:22891183-22891303 27 2.01e-05 GCAACTGTTT TCTTATCG AGTGGACTGA chr3R:8518704-8518824 42 2.01e-05 ATTCAGCTAA TCTTATCG CAGCATAATA chr3L:6933747-6933867 64 2.01e-05 GCGCAGACTA TCTTATCG CTTATTACTA chrX:16900936-16901056 13 2.01e-05 ATCCCTCGAT TCTTATCG TTCAGCGACG chrX:12773054-12773174 61 2.01e-05 GGAGAATTCT TCTTATCG CAGCTGATTA chr3L:20462530-20462650 70 2.01e-05 TAATATTGGT TCTTATCG TCGTTTGTTG chr2L:6654783-6654903 29 3.12e-05 TTAATAACCA GCTTATCG ACGAAAGACT chr3R:19873997-19874117 66 3.12e-05 CAATTAATTT GCTTATCG GCTGGTCCGC chr3R:13783393-13783513 92 3.12e-05 CATTTCGAAA GCTTATCG CGATTCTTTA chr3R:15891353-15891473 12 8.59e-05 TGATTCCTAA TCTAATCG CGACAAGCGG chr2R:17338340-17338460 53 8.59e-05 ACTTTTGCTA TCTTATCA GTGGGTCGTA chrX:8490732-8490852 79 8.59e-05 TTGTCGGTCG TCTTATCA ATATACCGAT chr2L:5798751-5798871 94 8.59e-05 ATGTTATCAA TCTTATCA TTCAAGTGGT chr2R:23717005-23717125 95 8.59e-05 ATATAAAAAA TCTAATCG CCAAATATTG chr2L:12701641-12701761 30 8.59e-05 AAGTCGACCC TCTAATCG GTTCTACTTT chr2L:16292-16412 87 8.59e-05 ATAAAAGCAA TCTTATCA GCTCCCCCCT chrX:3874305-3874425 7 8.59e-05 GCTCGT TCTAATCG CTTGTAAATC chr2R:18058019-18058139 107 8.59e-05 TCACCATGCC TCTTATCA TACCAC chr3L:16655714-16655834 42 8.59e-05 GGAGCACTAA TCTTATCA ACCTAATTGT chr2L:1641621-1641741 8 8.59e-05 ATTCTTA TCTTATCA ATAAACCGAT chr3R:25260830-25260950 3 8.59e-05 TA TCTAATCG CTTCTGCATG chr2L:20762957-20763077 81 8.59e-05 TAAATGGTTT TCTTATCA AATTGCCATT chr2L:3640714-3640834 27 8.59e-05 TATTATGAAA TCTAATCG CTGGCTAATC chr2R:18051427-18051547 78 8.59e-05 TTTAATCCGC TCTAATCG AGCAGTAAGC chr2L:10848933-10849053 71 8.59e-05 ATAAGTTTAA TCTTATCA GCAACATAAT chr2R:15941914-15942034 96 8.59e-05 GAAGTGGTAG TCTAATCG GTCTGATTGG chr3L:6261382-6261502 26 8.59e-05 CAGTTTTTTA TCTTATCA CAAGAGTTTC chr3R:21746026-21746146 34 8.59e-05 TAGTTTCATT TCTTATCA AGAGACACAA chr3R:11247004-11247124 13 8.59e-05 CTATAAACAT TCTTATCA AATAATTTGT chr3L:4255886-4256006 101 1.16e-04 GGCTGGAAAT GCTTATCA GTCATTGTTT chr3R:26735490-26735610 4 1.16e-04 AGC GCTTATCA TATCTGGCCC chr3R:7216253-7216373 34 1.16e-04 CGTAGTCTGA GCTTATCA TTGCACGTAA chrX:20934634-20934754 67 1.16e-04 GAATTCAGAA GCTTATCA CCTGGCGATA chr2R:7534764-7534884 107 1.16e-04 AATTACTTTA GCTTATCA CTCAGC chr2L:13849264-13849384 71 1.16e-04 TACTTAAGTG GCTAATCG TTATTTGTTG chr2L:6426467-6426587 91 1.16e-04 AATATTATCA GCTTATCA TATGCCAATT chrX:21027262-21027382 61 1.36e-04 AAGACAAGTC ACTTATCG AATAGCTATT chrX:16439329-16439449 82 1.36e-04 AATTGTCAAT ACTTATCG CGCACCGAGC chr2L:1709481-1709601 108 1.36e-04 CTGTGCTTCT ACTTATCG TTGAT chr3R:25899808-25899928 46 1.36e-04 CTTTGCCTTA ACTTATCG GCCAGAGGCA chr2R:14983718-14983838 1 1.36e-04 . ACTTATCG ATTAGATGAT chr3L:337288-337408 30 1.72e-04 CCGCTCGCTA TCTTATCT TGTATCATTA chr2L:5806005-5806125 25 1.72e-04 TTACATTTAA TCTTATCT TAAATGAATT chr2L:8989872-8989992 23 1.72e-04 GAGCGATAGG TCTTATCT AATCCATCGG chr2R:14244634-14244754 3 1.72e-04 AA TCTTATCT TATCTCTCTC chr3R:30599543-30599663 26 2.17e-04 TATTACCAAA TCTAATCA ATAGATTTAT chr2R:19385390-19385510 79 2.17e-04 ACAAACCATA TCTAATCA CCAAGATCTG chr3R:16007656-16007776 56 2.17e-04 CATATTCTAA TCTAATCA GCGGATCGTT chr2R:22842612-22842732 71 2.17e-04 TCCAGCGCAA TCTAATCA GTTAATTTAT chr3R:12210603-12210723 74 2.17e-04 GTGTTTTCCC CCTTATCG GCGATACTTA chr2R:23609246-23609366 17 2.17e-04 TCTTTTTCAA CCTTATCG CCTGAGCGCC chr3R:23343084-23343204 69 2.17e-04 TGACAATTGT CCTTATCG ATTCGCGAAT chr2R:19434462-19434582 40 2.17e-04 CGTGGCTTAA TCTAATCA AAACAATTAG chr2R:16592656-16592776 35 2.37e-04 CCAGTTCGGT GCTTATCT GGCTTAATTA chr2L:14636375-14636495 71 2.37e-04 ATCAAATCGC GCTTATCT CCTGACCGTA chr3R:20602738-20602858 8 2.37e-04 CCGCGCT GCTTATCT CTATCTAAAC chr2L:2801901-2802021 44 2.37e-04 TGCCTAATGA GCTTATCT GCCACAGAAA chr2R:15885115-15885235 7 2.37e-04 CGATTG GCTTATCT GGCCACAAAA chr2L:9422120-9422240 1 2.37e-04 . GCTTATCT GGTATTTAAT chrX:18486471-18486591 101 2.56e-04 GTAATTATAA GCTAATCA CATGTATGAT chr2R:22599483-22599603 57 2.56e-04 AATGTTAAGT GCTAATCA GCCATCGAAA chr3L:21283659-21283779 32 2.56e-04 GTGTCAAAAA GCTAATCA CTTTGGTTTC chr2L:8940816-8940936 53 3.10e-04 AAAGAGCCCC ACTTATCA GTGTCTCCCC chr3L:16573232-16573352 110 3.10e-04 CTTTGGCGGC ACTAATCG CAT chrX:9190924-9191044 65 3.10e-04 TCAAAATCGC ACTAATCG AAGCATCTAA chr3R:23991486-23991606 4 3.10e-04 GAC ACTAATCG GTTTTAATAA chr3R:13298831-13298951 95 3.10e-04 CACACTATCA ACTAATCG AATATTGGGC chr2R:18020096-18020216 24 3.10e-04 AATGCTTAAG ACTTATCA CCTGGCCGTC chr3L:21069587-21069707 54 3.10e-04 ACAGATGTGC ACTTATCA GTTTTCAGAG chrX:5410362-5410482 23 3.45e-04 ACTGCCTTCT TCTAATCT GAATCGCTGG chrX:17711593-17711713 59 3.45e-04 AACAAATAGA TCTAATCT AATTTACTAT chr2R:13011049-13011169 87 3.45e-04 ATTGCCCGAA TCTAATCT ACGCTGGCAA chr3R:11168205-11168325 105 3.45e-04 TCAGATGTTC TCTAATCT TTACTTCA chrX:3708012-3708132 70 3.74e-04 GAACGACGCC CCTTATCA TTCTTTTTTT chr2L:17389874-17389994 93 3.74e-04 ATGCTTAGAT CCTTATCA TTTAACCGAT chr3R:15975337-15975457 61 3.74e-04 CTTAGCCTAT CCTAATCG GTACTTTACG chr2R:23070187-23070307 88 3.94e-04 GGGTGCCCCC GCTAATCT GCAGCCGATC chr3R:25757686-25757806 4 4.29e-04 TCC ACTTATCT TCAAGTCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9662000-9662120 2e-05 43_[+1]_69 chr3R:4446604-4446724 2e-05 59_[+1]_53 chr3R:12211716-12211836 2e-05 71_[+1]_41 chr3L:18638170-18638290 2e-05 85_[+1]_27 chrX:5955296-5955416 2e-05 45_[+1]_67 chr2L:1121452-1121572 2e-05 67_[+1]_45 chr3L:22891183-22891303 2e-05 26_[+1]_86 chr3R:8518704-8518824 2e-05 41_[+1]_71 chr3L:6933747-6933867 2e-05 63_[+1]_49 chrX:16900936-16901056 2e-05 12_[+1]_100 chrX:12773054-12773174 2e-05 60_[+1]_52 chr3L:20462530-20462650 2e-05 69_[+1]_43 chr2L:6654783-6654903 3.1e-05 28_[+1]_84 chr3R:19873997-19874117 3.1e-05 65_[+1]_47 chr3R:13783393-13783513 3.1e-05 91_[+1]_21 chr3R:15891353-15891473 8.6e-05 11_[+1]_101 chr2R:17338340-17338460 8.6e-05 52_[+1]_60 chrX:8490732-8490852 8.6e-05 78_[+1]_34 chr2L:5798751-5798871 8.6e-05 93_[+1]_19 chr2R:23717005-23717125 8.6e-05 94_[+1]_18 chr2L:12701641-12701761 8.6e-05 29_[+1]_83 chr2L:16292-16412 8.6e-05 86_[+1]_26 chrX:3874305-3874425 8.6e-05 6_[+1]_106 chr2R:18058019-18058139 8.6e-05 106_[+1]_6 chr3L:16655714-16655834 8.6e-05 41_[+1]_71 chr2L:1641621-1641741 8.6e-05 7_[+1]_105 chr3R:25260830-25260950 8.6e-05 2_[+1]_110 chr2L:20762957-20763077 8.6e-05 80_[+1]_32 chr2L:3640714-3640834 8.6e-05 26_[+1]_86 chr2R:18051427-18051547 8.6e-05 77_[+1]_35 chr2L:10848933-10849053 8.6e-05 70_[+1]_42 chr2R:15941914-15942034 8.6e-05 95_[+1]_17 chr3L:6261382-6261502 8.6e-05 25_[+1]_87 chr3R:21746026-21746146 8.6e-05 33_[+1]_79 chr3R:11247004-11247124 8.6e-05 12_[+1]_100 chr3L:4255886-4256006 0.00012 100_[+1]_12 chr3R:26735490-26735610 0.00012 3_[+1]_109 chr3R:7216253-7216373 0.00012 33_[+1]_79 chrX:20934634-20934754 0.00012 66_[+1]_46 chr2R:7534764-7534884 0.00012 106_[+1]_6 chr2L:13849264-13849384 0.00012 70_[+1]_42 chr2L:6426467-6426587 0.00012 90_[+1]_22 chrX:21027262-21027382 0.00014 60_[+1]_52 chrX:16439329-16439449 0.00014 81_[+1]_31 chr2L:1709481-1709601 0.00014 107_[+1]_5 chr3R:25899808-25899928 0.00014 45_[+1]_67 chr2R:14983718-14983838 0.00014 [+1]_112 chr3L:337288-337408 0.00017 29_[+1]_83 chr2L:5806005-5806125 0.00017 24_[+1]_88 chr2L:8989872-8989992 0.00017 22_[+1]_90 chr2R:14244634-14244754 0.00017 2_[+1]_110 chr3R:30599543-30599663 0.00022 25_[+1]_87 chr2R:19385390-19385510 0.00022 78_[+1]_34 chr3R:16007656-16007776 0.00022 55_[+1]_57 chr2R:22842612-22842732 0.00022 70_[+1]_42 chr3R:12210603-12210723 0.00022 73_[+1]_39 chr2R:23609246-23609366 0.00022 16_[+1]_96 chr3R:23343084-23343204 0.00022 68_[+1]_44 chr2R:19434462-19434582 0.00022 39_[+1]_73 chr2R:16592656-16592776 0.00024 34_[+1]_78 chr2L:14636375-14636495 0.00024 70_[+1]_42 chr3R:20602738-20602858 0.00024 7_[+1]_105 chr2L:2801901-2802021 0.00024 43_[+1]_69 chr2R:15885115-15885235 0.00024 6_[+1]_106 chr2L:9422120-9422240 0.00024 [+1]_112 chrX:18486471-18486591 0.00026 100_[+1]_12 chr2R:22599483-22599603 0.00026 56_[+1]_56 chr3L:21283659-21283779 0.00026 31_[+1]_81 chr2L:8940816-8940936 0.00031 52_[+1]_60 chr3L:16573232-16573352 0.00031 109_[+1]_3 chrX:9190924-9191044 0.00031 64_[+1]_48 chr3R:23991486-23991606 0.00031 3_[+1]_109 chr3R:13298831-13298951 0.00031 94_[+1]_18 chr2R:18020096-18020216 0.00031 23_[+1]_89 chr3L:21069587-21069707 0.00031 53_[+1]_59 chrX:5410362-5410482 0.00034 22_[+1]_90 chrX:17711593-17711713 0.00034 58_[+1]_54 chr2R:13011049-13011169 0.00034 86_[+1]_26 chr3R:11168205-11168325 0.00034 104_[+1]_8 chrX:3708012-3708132 0.00037 69_[+1]_43 chr2L:17389874-17389994 0.00037 92_[+1]_20 chr3R:15975337-15975457 0.00037 60_[+1]_52 chr2R:23070187-23070307 0.00039 87_[+1]_25 chr3R:25757686-25757806 0.00043 3_[+1]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCR width=8 seqs=84 chrX:9662000-9662120 ( 44) TCTTATCG 1 chr3R:4446604-4446724 ( 60) TCTTATCG 1 chr3R:12211716-12211836 ( 72) TCTTATCG 1 chr3L:18638170-18638290 ( 86) TCTTATCG 1 chrX:5955296-5955416 ( 46) TCTTATCG 1 chr2L:1121452-1121572 ( 68) TCTTATCG 1 chr3L:22891183-22891303 ( 27) TCTTATCG 1 chr3R:8518704-8518824 ( 42) TCTTATCG 1 chr3L:6933747-6933867 ( 64) TCTTATCG 1 chrX:16900936-16901056 ( 13) TCTTATCG 1 chrX:12773054-12773174 ( 61) TCTTATCG 1 chr3L:20462530-20462650 ( 70) TCTTATCG 1 chr2L:6654783-6654903 ( 29) GCTTATCG 1 chr3R:19873997-19874117 ( 66) GCTTATCG 1 chr3R:13783393-13783513 ( 92) GCTTATCG 1 chr3R:15891353-15891473 ( 12) TCTAATCG 1 chr2R:17338340-17338460 ( 53) TCTTATCA 1 chrX:8490732-8490852 ( 79) TCTTATCA 1 chr2L:5798751-5798871 ( 94) TCTTATCA 1 chr2R:23717005-23717125 ( 95) TCTAATCG 1 chr2L:12701641-12701761 ( 30) TCTAATCG 1 chr2L:16292-16412 ( 87) TCTTATCA 1 chrX:3874305-3874425 ( 7) TCTAATCG 1 chr2R:18058019-18058139 ( 107) TCTTATCA 1 chr3L:16655714-16655834 ( 42) TCTTATCA 1 chr2L:1641621-1641741 ( 8) TCTTATCA 1 chr3R:25260830-25260950 ( 3) TCTAATCG 1 chr2L:20762957-20763077 ( 81) TCTTATCA 1 chr2L:3640714-3640834 ( 27) TCTAATCG 1 chr2R:18051427-18051547 ( 78) TCTAATCG 1 chr2L:10848933-10849053 ( 71) TCTTATCA 1 chr2R:15941914-15942034 ( 96) TCTAATCG 1 chr3L:6261382-6261502 ( 26) TCTTATCA 1 chr3R:21746026-21746146 ( 34) TCTTATCA 1 chr3R:11247004-11247124 ( 13) TCTTATCA 1 chr3L:4255886-4256006 ( 101) GCTTATCA 1 chr3R:26735490-26735610 ( 4) GCTTATCA 1 chr3R:7216253-7216373 ( 34) GCTTATCA 1 chrX:20934634-20934754 ( 67) GCTTATCA 1 chr2R:7534764-7534884 ( 107) GCTTATCA 1 chr2L:13849264-13849384 ( 71) GCTAATCG 1 chr2L:6426467-6426587 ( 91) GCTTATCA 1 chrX:21027262-21027382 ( 61) ACTTATCG 1 chrX:16439329-16439449 ( 82) ACTTATCG 1 chr2L:1709481-1709601 ( 108) ACTTATCG 1 chr3R:25899808-25899928 ( 46) ACTTATCG 1 chr2R:14983718-14983838 ( 1) ACTTATCG 1 chr3L:337288-337408 ( 30) TCTTATCT 1 chr2L:5806005-5806125 ( 25) TCTTATCT 1 chr2L:8989872-8989992 ( 23) TCTTATCT 1 chr2R:14244634-14244754 ( 3) TCTTATCT 1 chr3R:30599543-30599663 ( 26) TCTAATCA 1 chr2R:19385390-19385510 ( 79) TCTAATCA 1 chr3R:16007656-16007776 ( 56) TCTAATCA 1 chr2R:22842612-22842732 ( 71) TCTAATCA 1 chr3R:12210603-12210723 ( 74) CCTTATCG 1 chr2R:23609246-23609366 ( 17) CCTTATCG 1 chr3R:23343084-23343204 ( 69) CCTTATCG 1 chr2R:19434462-19434582 ( 40) TCTAATCA 1 chr2R:16592656-16592776 ( 35) GCTTATCT 1 chr2L:14636375-14636495 ( 71) GCTTATCT 1 chr3R:20602738-20602858 ( 8) GCTTATCT 1 chr2L:2801901-2802021 ( 44) GCTTATCT 1 chr2R:15885115-15885235 ( 7) GCTTATCT 1 chr2L:9422120-9422240 ( 1) GCTTATCT 1 chrX:18486471-18486591 ( 101) GCTAATCA 1 chr2R:22599483-22599603 ( 57) GCTAATCA 1 chr3L:21283659-21283779 ( 32) GCTAATCA 1 chr2L:8940816-8940936 ( 53) ACTTATCA 1 chr3L:16573232-16573352 ( 110) ACTAATCG 1 chrX:9190924-9191044 ( 65) ACTAATCG 1 chr3R:23991486-23991606 ( 4) ACTAATCG 1 chr3R:13298831-13298951 ( 95) ACTAATCG 1 chr2R:18020096-18020216 ( 24) ACTTATCA 1 chr3L:21069587-21069707 ( 54) ACTTATCA 1 chrX:5410362-5410482 ( 23) TCTAATCT 1 chrX:17711593-17711713 ( 59) TCTAATCT 1 chr2R:13011049-13011169 ( 87) TCTAATCT 1 chr3R:11168205-11168325 ( 105) TCTAATCT 1 chrX:3708012-3708132 ( 70) CCTTATCA 1 chr2L:17389874-17389994 ( 93) CCTTATCA 1 chr3R:15975337-15975457 ( 61) CCTAATCG 1 chr2R:23070187-23070307 ( 88) GCTAATCT 1 chr3R:25757686-25757806 ( 4) ACTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3778 E= 2.4e-026 -104 -131 39 72 -1304 250 -1304 -1304 -1304 -1304 -1304 162 2 -1304 -1304 106 166 -1304 -1304 -1304 -1304 -1304 -1304 162 -1304 250 -1304 -1304 22 -1304 128 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.4e-026 0.154762 0.071429 0.238095 0.535714 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.321429 0.000000 0.000000 0.678571 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.369048 0.000000 0.440476 0.190476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCR MEME-1 regular expression -------------------------------------------------------------------------------- [TG]CT[TA]ATC[GA] -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF HGATWAGV MEME-2 width = 8 sites = 111 llr = 777 E-value = 1.6e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:a:69:4 pos.-specific C 4:::::23 probability G :a:::182 matrix T 4::a4::1 bits 2.5 * 2.3 * 2.0 * 1.8 ** * Relative 1.5 *** * Entropy 1.3 *** ** (10.1 bits) 1.0 *** ** 0.8 ****** 0.5 ******* 0.3 ******** 0.0 -------- Multilevel CGATAAGA consensus T T CC sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11356608-11356728 28 2.97e-05 TATATACTAA CGATAAGC CATCAATTAG chr3R:31014446-31014566 65 2.97e-05 TCGGCCATTA CGATAAGC GTGGGCAGTA chr3R:29783428-29783548 18 2.97e-05 GTTTGCCCTG CGATAAGA AATTTCAACC chrX:2637802-2637922 78 2.97e-05 GCGGTTCAAA CGATAAGA TTATGATTGG chr3L:448427-448547 89 2.97e-05 TTGTGCACGT CGATAAGA TAAGTGAAAT chr2R:17710885-17711005 33 2.97e-05 CAGACATTCT CGATAAGA GTCCTTCGTC chrX:5948009-5948129 90 2.97e-05 GCACATTTGG CGATAAGA TAAGCTAAAG chr2L:1709481-1709601 45 2.97e-05 TAAAGAGAAA CGATAAGC TGATAAGGAA chr3L:21204416-21204536 4 2.97e-05 AAC CGATAAGA TAAGTGGACA chr2R:23603581-23603701 53 2.97e-05 TAAATATTAA CGATAAGC AGTTCGCCGT chr3R:25757686-25757806 69 2.97e-05 TAAAATTGAC CGATAAGA TAATCCCCAG chr3R:21242303-21242423 77 2.97e-05 TGTTAGCCAT CGATAAGA TAATCGCACT chrX:6201598-6201718 102 2.97e-05 CCATTGTCGG CGATAAGA GACACATGTC chrX:20934634-20934754 80 4.05e-05 TATCACCTGG CGATAAGG ACGGGGGAAA chr3R:11982119-11982239 56 7.09e-05 ATAATTGCCC CGATTAGC AAGATTTTCT chr3L:15517630-15517750 90 7.09e-05 GCATCCGACG CGATTAGA TTAAGTCATG chr3L:6933747-6933867 9 7.09e-05 AGCCATTG CGATTAGA TTGCAGATCA chr3R:25260830-25260950 88 7.09e-05 ATTGCTTTAG CGATTAGC ACAATCACTA chrX:17711593-17711713 25 7.09e-05 ACAAATGTTG CGATTAGA ACCGCAACTC chr2L:8500117-8500237 62 7.09e-05 AATCTTTAAC CGATTAGA TTGGTTGTCG chr3R:12739381-12739501 38 7.09e-05 TAACTGACAC CGATTAGC AAACTTTTTG chr3L:10680317-10680437 29 7.09e-05 CCAGATATTT CGATTAGA TTAGTTTAGT chr2L:12444671-12444791 110 7.09e-05 TAGGCCGAGG CGATTAGA TAA chr2L:6426467-6426587 56 7.09e-05 CGCTTATTTT CGATTAGA AAATTCCGGC chrX:13678109-13678229 84 8.21e-05 GCTTAAATTC CGATTAGG TTGGTGCCAT chrX:16439329-16439449 38 8.21e-05 GGCCAGTGCC CGATTAGG TAAAACGCTA chr2L:2169558-2169678 47 8.21e-05 TATCTTTTAA CGATTAGG GCGAAGGTGG chr2L:12590108-12590228 1 1.37e-04 . TGATAAGA ATTATTGATT chr3R:14710543-14710663 56 1.37e-04 TCAATACAAA TGATAAGC AAATTGGTTG chrX:15888898-15889018 69 1.37e-04 ACTTTCTTGT TGATAAGC TGTTAATCTT chrX:16922758-16922878 13 1.37e-04 TGCTGTAGAA TGATAAGC TGTCTCTATC chr2L:13850190-13850310 112 1.37e-04 AATAATCATT TGATAAGA A chr2L:8940816-8940936 98 1.37e-04 AGCGGTACGC TGATAAGA AATCAATGGA chr2L:8989872-8989992 104 1.37e-04 TCTGTTTATT TGATAAGC AAAAAATTC chrX:8879990-8880110 66 1.37e-04 AGTGCTCTCT TGATAAGA ACACAATTTC chr3R:18227439-18227559 69 1.37e-04 TTTTATGCTC TGATAAGA TAAGCAGCTG chr3L:8691455-8691575 19 1.37e-04 ACATTTCCCT TGATAAGC CCATTAAGTG chr2R:12323030-12323150 105 1.37e-04 ACATCGTAAC TGATAAGC CTCATTTT chrX:6691450-6691570 75 1.37e-04 GTAATttgag tgataaga ttgattgatg chrX:9102264-9102384 58 1.37e-04 TTTATGCGAG TGATAAGA TAATGAGCTT chr3L:7842256-7842376 61 1.37e-04 AACTGATAGC TGATAAGC TGAAGCCAGT chr3L:6033155-6033275 109 1.37e-04 GCTTTCTGCT TGATAAGC CAAC chrX:18486471-18486591 15 1.56e-04 GATTTGTTTC TGATAAGG ACAGAATGCT chr3R:20544212-20544332 53 1.56e-04 ACTTTTCACT TGATAAGG CGCAAACGTG chr2L:4835265-4835385 14 1.56e-04 CAAATCGCAC TGATAAGG CTTGGCCAAG chr3R:22520638-22520758 104 2.12e-04 AAGAATTAAC TGATTAGA CCAGCTTGA chr3L:9845558-9845678 52 2.12e-04 AAAGATTAAG TGATTAGC GCAAGTGGTC chr3L:4255886-4256006 55 2.12e-04 TTGGCCAGCC TGATTAGA AAAGCTCAAC chrX:3708012-3708132 11 2.12e-04 TTCGGTTTCC TGATTAGA TTTTTATATT chr3L:22891183-22891303 110 2.12e-04 TATGTTATTA TGATTAGA TTT chr3R:27016722-27016842 101 2.86e-04 TTAATTACAG AGATAAGA AGCTTGCTTT chrX:19592374-19592494 17 2.86e-04 AGATAATTTT TGATTAGG TCGAACTTTG chr3R:29681374-29681494 85 2.86e-04 CCAAATCAAG TGATTAGG GAAATCGAAC chrX:9639723-9639843 62 2.86e-04 CTAATTGCTT AGATAAGA TAAGTTCTTT chr2L:17389874-17389994 38 2.86e-04 TTGAGTTTAA AGATAAGA TACAGCGTTA chr3L:21283659-21283779 97 2.86e-04 ATCAATTACT AGATAAGA TATGTTTCGT chr3L:11533553-11533673 64 2.86e-04 ACACAACTCA AGATAAGA TTATTTGATT chr2L:321246-321366 45 2.86e-04 CCACCACTAG AGATAAGC AGATAGATTT chr3R:20319117-20319237 27 2.86e-04 GAGGGCACTG AGATAAGA GTTGCTACGC chr3L:6497334-6497454 10 2.86e-04 AGTTTTATA AGATAAGA TTATTCACTA chr3R:26737129-26737249 55 2.86e-04 GCTATCGCTT AGATAAGC GATGTGCATG chr2L:13849264-13849384 87 2.86e-04 CGTTATTTGT TGATTAGG CAAGGGAAAA chr3L:5479571-5479691 39 3.15e-04 CAGAAGTTAA CGATAACA TAAAATCACA chr2R:22842612-22842732 50 3.51e-04 AGGAAGAGCT CGATAGGC CAGTCCAGCG chrX:9190924-9191044 22 3.51e-04 TTGCGTTGAG CGATAGGA AACATCTATT chr2R:16592656-16592776 5 4.16e-04 TCTG AGATTAGA TTTTTCTGTT chr2R:11337757-11337877 23 4.16e-04 CCAATACAGA CGATAACG TAGTATATTG chr2L:11739335-11739455 107 4.16e-04 GATAATCACT CGATAACG TTCATT chr3R:17137351-17137471 41 4.16e-04 CTTAATGTAG AGATTAGA CTCGAGTATG chr2L:20762957-20763077 38 4.16e-04 ATTATATTCC AGATTAGA GCTTAAGTGG chrX:18509569-18509689 7 4.16e-04 AGTCTT CGATAACG TGCCATAAAA chr2L:1641621-1641741 39 4.52e-04 AATCTAATTT CGATTACC TTTTACGATA chr3L:11622871-11622991 89 4.52e-04 TTCACGATTC CGATTACA CCTTACTTTT chr3R:27023558-27023678 8 4.52e-04 CAGCTAT CGATTACA ATGGTTGGCG chr2R:23717005-23717125 57 4.90e-04 TAATAAATGG CGATTGGC CCGACTTAAG chr3L:3421541-3421661 97 4.90e-04 TTTTGGGGTT AGATTAGG TGATTAGTTC chrX:1176109-1176229 94 4.90e-04 ATTTACGAAA CGATTGGA TTGCTTTCAT chr2R:10852378-10852498 90 4.90e-04 GCGGCTATAT AGATTAGG CATAGTGGCC chr2R:18051427-18051547 100 4.90e-04 GTAAGCAATA CGATTGGA AATCTAGACC chr3R:16202496-16202616 42 4.90e-04 CCAGCCGGAT AGATTAGG CGGAGATTAA chrX:16934588-16934708 106 5.00e-04 TTGAGGCCAT CGATTACG AAGCATA chr3R:16173623-16173743 53 5.80e-04 CTTTTTTCCT TGATAACC ACTGTGTTAT chr2L:4998749-4998869 84 5.80e-04 ATGAACTTAT TGATAACA AGTTATCAAT chr2L:10848933-10849053 59 5.80e-04 GTTTAGCGAA CGATAAGT TTAATCTTAT chr3L:7402105-7402225 52 5.80e-04 ACCCAATTAG CGATAAGT CCGTAGTATC chr2R:10079251-10079371 81 5.80e-04 TGCTATTAAT TGATAACA TTGCGTCTCT chrX:8110010-8110130 112 6.11e-04 ACTGGCTGAT TGATAGGC C chr3L:4106781-4106901 101 6.30e-04 ATAACGATTA TGATAACG ATGTTGTGCC chr3L:11112933-11113053 16 6.30e-04 GCACTGATTA TGATAACG AGCGTGGCCA chrX:19590715-19590835 9 6.30e-04 ACACTTAG TGATAACG GCCTAATGGG chrX:23012024-23012144 65 6.30e-04 GCACCTCAAC TGATAACG ATGATTCAGC chrX:12886628-12886748 85 7.16e-04 tgtgtgtgtg tgATTACA ATGCCCAACA chrX:11424637-11424757 9 7.16e-04 ACAATGCC CGATTAGT TTATAGTTAA chr2L:12453540-12453660 42 7.16e-04 GATTATCACA CGATTAGT TTTATGACCT chr2L:8983308-8983428 36 7.48e-04 TCCTGATTGG TGATTGGA GCCCTCAATA chr2R:14244634-14244754 71 7.48e-04 TAAGTATTTA TGATTGGC GGGCTATCAA chr2R:15941914-15942034 107 7.48e-04 CTAATCGGTC TGATTGGC ataata chr2R:11336626-11336746 105 8.20e-04 GTCTGTTTCT TGATTACG AAAACTAT chr3R:23217271-23217391 42 8.20e-04 AACCCTCCAC AGATAACA ATTACAATCT chr2R:9744676-9744796 97 8.20e-04 GAATATATAC AGATAACC GTTGACAGCG chr3R:14461436-14461556 87 8.20e-04 AAATTGTTTT AGATAACC ATATCATAGC chr3R:16190113-16190233 74 8.20e-04 ATCAGTTATC TGATTACG GGTTGATGTG chrX:9596998-9597118 81 8.98e-04 TGAGTTTTAT TGATTGGG ACGCTCTAGG chr3R:27002911-27003031 42 8.98e-04 TATGCAGGCA TGATAAGT TCGAAGTATA chr2L:6870900-6871020 53 9.33e-04 TGATGACCCG AGATAACG ATTGGTTTTT chr3R:7216253-7216373 76 9.98e-04 TATAATTAAT AGATTACC CTTAATCCGA chr3L:11953877-11953997 1 1.07e-03 . AGATTGGA ATGCTTTCGG chrX:13563082-13563202 38 1.07e-03 AACAATCAAT TGATTAGT TGGCCATAAA chrX:12773054-12773174 1 1.07e-03 . AGATTGGC CCTTTTAGAC chr2L:9422120-9422240 82 1.11e-03 AGTGATTTTC CGATTGCC TATGGCCATT chrX:19227612-19227732 65 1.15e-03 ACTAAAGGCG AGATAAGT CGATCATCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11356608-11356728 3e-05 27_[+2]_85 chr3R:31014446-31014566 3e-05 64_[+2]_48 chr3R:29783428-29783548 3e-05 17_[+2]_95 chrX:2637802-2637922 3e-05 77_[+2]_35 chr3L:448427-448547 3e-05 88_[+2]_24 chr2R:17710885-17711005 3e-05 32_[+2]_80 chrX:5948009-5948129 3e-05 89_[+2]_23 chr2L:1709481-1709601 3e-05 44_[+2]_68 chr3L:21204416-21204536 3e-05 3_[+2]_109 chr2R:23603581-23603701 3e-05 52_[+2]_60 chr3R:25757686-25757806 3e-05 68_[+2]_44 chr3R:21242303-21242423 3e-05 76_[+2]_36 chrX:6201598-6201718 3e-05 101_[+2]_11 chrX:20934634-20934754 4.1e-05 79_[+2]_33 chr3R:11982119-11982239 7.1e-05 55_[+2]_57 chr3L:15517630-15517750 7.1e-05 89_[+2]_23 chr3L:6933747-6933867 7.1e-05 8_[+2]_104 chr3R:25260830-25260950 7.1e-05 87_[+2]_25 chrX:17711593-17711713 7.1e-05 24_[+2]_88 chr2L:8500117-8500237 7.1e-05 61_[+2]_51 chr3R:12739381-12739501 7.1e-05 37_[+2]_75 chr3L:10680317-10680437 7.1e-05 28_[+2]_84 chr2L:12444671-12444791 7.1e-05 109_[+2]_3 chr2L:6426467-6426587 7.1e-05 55_[+2]_57 chrX:13678109-13678229 8.2e-05 83_[+2]_29 chrX:16439329-16439449 8.2e-05 37_[+2]_75 chr2L:2169558-2169678 8.2e-05 46_[+2]_66 chr2L:12590108-12590228 0.00014 [+2]_112 chr3R:14710543-14710663 0.00014 55_[+2]_57 chrX:15888898-15889018 0.00014 68_[+2]_44 chrX:16922758-16922878 0.00014 12_[+2]_100 chr2L:13850190-13850310 0.00014 111_[+2]_1 chr2L:8940816-8940936 0.00014 97_[+2]_15 chr2L:8989872-8989992 0.00014 103_[+2]_9 chrX:8879990-8880110 0.00014 65_[+2]_47 chr3R:18227439-18227559 0.00014 68_[+2]_44 chr3L:8691455-8691575 0.00014 18_[+2]_94 chr2R:12323030-12323150 0.00014 104_[+2]_8 chrX:6691450-6691570 0.00014 74_[+2]_38 chrX:9102264-9102384 0.00014 57_[+2]_55 chr3L:7842256-7842376 0.00014 60_[+2]_52 chr3L:6033155-6033275 0.00014 108_[+2]_4 chrX:18486471-18486591 0.00016 14_[+2]_98 chr3R:20544212-20544332 0.00016 52_[+2]_60 chr2L:4835265-4835385 0.00016 13_[+2]_99 chr3R:22520638-22520758 0.00021 103_[+2]_9 chr3L:9845558-9845678 0.00021 51_[+2]_61 chr3L:4255886-4256006 0.00021 54_[+2]_58 chrX:3708012-3708132 0.00021 10_[+2]_102 chr3L:22891183-22891303 0.00021 109_[+2]_3 chr3R:27016722-27016842 0.00029 100_[+2]_12 chrX:19592374-19592494 0.00029 16_[+2]_96 chr3R:29681374-29681494 0.00029 84_[+2]_28 chrX:9639723-9639843 0.00029 61_[+2]_51 chr2L:17389874-17389994 0.00029 37_[+2]_75 chr3L:21283659-21283779 0.00029 96_[+2]_16 chr3L:11533553-11533673 0.00029 63_[+2]_49 chr2L:321246-321366 0.00029 44_[+2]_68 chr3R:20319117-20319237 0.00029 26_[+2]_86 chr3L:6497334-6497454 0.00029 9_[+2]_103 chr3R:26737129-26737249 0.00029 54_[+2]_58 chr2L:13849264-13849384 0.00029 86_[+2]_26 chr3L:5479571-5479691 0.00031 38_[+2]_74 chr2R:22842612-22842732 0.00035 49_[+2]_63 chrX:9190924-9191044 0.00035 21_[+2]_91 chr2R:16592656-16592776 0.00042 4_[+2]_108 chr2R:11337757-11337877 0.00042 22_[+2]_90 chr2L:11739335-11739455 0.00042 106_[+2]_6 chr3R:17137351-17137471 0.00042 40_[+2]_72 chr2L:20762957-20763077 0.00042 37_[+2]_75 chrX:18509569-18509689 0.00042 6_[+2]_106 chr2L:1641621-1641741 0.00045 38_[+2]_74 chr3L:11622871-11622991 0.00045 88_[+2]_24 chr3R:27023558-27023678 0.00045 7_[+2]_105 chr2R:23717005-23717125 0.00049 56_[+2]_56 chr3L:3421541-3421661 0.00049 96_[+2]_16 chrX:1176109-1176229 0.00049 93_[+2]_19 chr2R:10852378-10852498 0.00049 89_[+2]_23 chr2R:18051427-18051547 0.00049 99_[+2]_13 chr3R:16202496-16202616 0.00049 41_[+2]_71 chrX:16934588-16934708 0.0005 105_[+2]_7 chr3R:16173623-16173743 0.00058 52_[+2]_60 chr2L:4998749-4998869 0.00058 83_[+2]_29 chr2L:10848933-10849053 0.00058 58_[+2]_54 chr3L:7402105-7402225 0.00058 51_[+2]_61 chr2R:10079251-10079371 0.00058 80_[+2]_32 chrX:8110010-8110130 0.00061 111_[+2]_1 chr3L:4106781-4106901 0.00063 100_[+2]_12 chr3L:11112933-11113053 0.00063 15_[+2]_97 chrX:19590715-19590835 0.00063 8_[+2]_104 chrX:23012024-23012144 0.00063 64_[+2]_48 chrX:12886628-12886748 0.00072 84_[+2]_28 chrX:11424637-11424757 0.00072 8_[+2]_104 chr2L:12453540-12453660 0.00072 41_[+2]_71 chr2L:8983308-8983428 0.00075 35_[+2]_77 chr2R:14244634-14244754 0.00075 70_[+2]_42 chr2R:15941914-15942034 0.00075 106_[+2]_6 chr2R:11336626-11336746 0.00082 104_[+2]_8 chr3R:23217271-23217391 0.00082 41_[+2]_71 chr2R:9744676-9744796 0.00082 96_[+2]_16 chr3R:14461436-14461556 0.00082 86_[+2]_26 chr3R:16190113-16190233 0.00082 73_[+2]_39 chrX:9596998-9597118 0.0009 80_[+2]_32 chr3R:27002911-27003031 0.0009 41_[+2]_71 chr2L:6870900-6871020 0.00093 52_[+2]_60 chr3R:7216253-7216373 0.001 75_[+2]_37 chr3L:11953877-11953997 0.0011 [+2]_112 chrX:13563082-13563202 0.0011 37_[+2]_75 chrX:12773054-12773174 0.0011 [+2]_112 chr2L:9422120-9422240 0.0011 81_[+2]_31 chrX:19227612-19227732 0.0012 64_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGATWAGV width=8 seqs=111 chr2R:11356608-11356728 ( 28) CGATAAGC 1 chr3R:31014446-31014566 ( 65) CGATAAGC 1 chr3R:29783428-29783548 ( 18) CGATAAGA 1 chrX:2637802-2637922 ( 78) CGATAAGA 1 chr3L:448427-448547 ( 89) CGATAAGA 1 chr2R:17710885-17711005 ( 33) CGATAAGA 1 chrX:5948009-5948129 ( 90) CGATAAGA 1 chr2L:1709481-1709601 ( 45) CGATAAGC 1 chr3L:21204416-21204536 ( 4) CGATAAGA 1 chr2R:23603581-23603701 ( 53) CGATAAGC 1 chr3R:25757686-25757806 ( 69) CGATAAGA 1 chr3R:21242303-21242423 ( 77) CGATAAGA 1 chrX:6201598-6201718 ( 102) CGATAAGA 1 chrX:20934634-20934754 ( 80) CGATAAGG 1 chr3R:11982119-11982239 ( 56) CGATTAGC 1 chr3L:15517630-15517750 ( 90) CGATTAGA 1 chr3L:6933747-6933867 ( 9) CGATTAGA 1 chr3R:25260830-25260950 ( 88) CGATTAGC 1 chrX:17711593-17711713 ( 25) CGATTAGA 1 chr2L:8500117-8500237 ( 62) CGATTAGA 1 chr3R:12739381-12739501 ( 38) CGATTAGC 1 chr3L:10680317-10680437 ( 29) CGATTAGA 1 chr2L:12444671-12444791 ( 110) CGATTAGA 1 chr2L:6426467-6426587 ( 56) CGATTAGA 1 chrX:13678109-13678229 ( 84) CGATTAGG 1 chrX:16439329-16439449 ( 38) CGATTAGG 1 chr2L:2169558-2169678 ( 47) CGATTAGG 1 chr2L:12590108-12590228 ( 1) TGATAAGA 1 chr3R:14710543-14710663 ( 56) TGATAAGC 1 chrX:15888898-15889018 ( 69) TGATAAGC 1 chrX:16922758-16922878 ( 13) TGATAAGC 1 chr2L:13850190-13850310 ( 112) TGATAAGA 1 chr2L:8940816-8940936 ( 98) TGATAAGA 1 chr2L:8989872-8989992 ( 104) TGATAAGC 1 chrX:8879990-8880110 ( 66) TGATAAGA 1 chr3R:18227439-18227559 ( 69) TGATAAGA 1 chr3L:8691455-8691575 ( 19) TGATAAGC 1 chr2R:12323030-12323150 ( 105) TGATAAGC 1 chrX:6691450-6691570 ( 75) TGATAAGA 1 chrX:9102264-9102384 ( 58) TGATAAGA 1 chr3L:7842256-7842376 ( 61) TGATAAGC 1 chr3L:6033155-6033275 ( 109) TGATAAGC 1 chrX:18486471-18486591 ( 15) TGATAAGG 1 chr3R:20544212-20544332 ( 53) TGATAAGG 1 chr2L:4835265-4835385 ( 14) TGATAAGG 1 chr3R:22520638-22520758 ( 104) TGATTAGA 1 chr3L:9845558-9845678 ( 52) TGATTAGC 1 chr3L:4255886-4256006 ( 55) TGATTAGA 1 chrX:3708012-3708132 ( 11) TGATTAGA 1 chr3L:22891183-22891303 ( 110) TGATTAGA 1 chr3R:27016722-27016842 ( 101) AGATAAGA 1 chrX:19592374-19592494 ( 17) TGATTAGG 1 chr3R:29681374-29681494 ( 85) TGATTAGG 1 chrX:9639723-9639843 ( 62) AGATAAGA 1 chr2L:17389874-17389994 ( 38) AGATAAGA 1 chr3L:21283659-21283779 ( 97) AGATAAGA 1 chr3L:11533553-11533673 ( 64) AGATAAGA 1 chr2L:321246-321366 ( 45) AGATAAGC 1 chr3R:20319117-20319237 ( 27) AGATAAGA 1 chr3L:6497334-6497454 ( 10) AGATAAGA 1 chr3R:26737129-26737249 ( 55) AGATAAGC 1 chr2L:13849264-13849384 ( 87) TGATTAGG 1 chr3L:5479571-5479691 ( 39) CGATAACA 1 chr2R:22842612-22842732 ( 50) CGATAGGC 1 chrX:9190924-9191044 ( 22) CGATAGGA 1 chr2R:16592656-16592776 ( 5) AGATTAGA 1 chr2R:11337757-11337877 ( 23) CGATAACG 1 chr2L:11739335-11739455 ( 107) CGATAACG 1 chr3R:17137351-17137471 ( 41) AGATTAGA 1 chr2L:20762957-20763077 ( 38) AGATTAGA 1 chrX:18509569-18509689 ( 7) CGATAACG 1 chr2L:1641621-1641741 ( 39) CGATTACC 1 chr3L:11622871-11622991 ( 89) CGATTACA 1 chr3R:27023558-27023678 ( 8) CGATTACA 1 chr2R:23717005-23717125 ( 57) CGATTGGC 1 chr3L:3421541-3421661 ( 97) AGATTAGG 1 chrX:1176109-1176229 ( 94) CGATTGGA 1 chr2R:10852378-10852498 ( 90) AGATTAGG 1 chr2R:18051427-18051547 ( 100) CGATTGGA 1 chr3R:16202496-16202616 ( 42) AGATTAGG 1 chrX:16934588-16934708 ( 106) CGATTACG 1 chr3R:16173623-16173743 ( 53) TGATAACC 1 chr2L:4998749-4998869 ( 84) TGATAACA 1 chr2L:10848933-10849053 ( 59) CGATAAGT 1 chr3L:7402105-7402225 ( 52) CGATAAGT 1 chr2R:10079251-10079371 ( 81) TGATAACA 1 chrX:8110010-8110130 ( 112) TGATAGGC 1 chr3L:4106781-4106901 ( 101) TGATAACG 1 chr3L:11112933-11113053 ( 16) TGATAACG 1 chrX:19590715-19590835 ( 9) TGATAACG 1 chrX:23012024-23012144 ( 65) TGATAACG 1 chrX:12886628-12886748 ( 85) TGATTACA 1 chrX:11424637-11424757 ( 9) CGATTAGT 1 chr2L:12453540-12453660 ( 42) CGATTAGT 1 chr2L:8983308-8983428 ( 36) TGATTGGA 1 chr2R:14244634-14244754 ( 71) TGATTGGC 1 chr2R:15941914-15942034 ( 107) TGATTGGC 1 chr2R:11336626-11336746 ( 105) TGATTACG 1 chr3R:23217271-23217391 ( 42) AGATAACA 1 chr2R:9744676-9744796 ( 97) AGATAACC 1 chr3R:14461436-14461556 ( 87) AGATAACC 1 chr3R:16190113-16190233 ( 74) TGATTACG 1 chrX:9596998-9597118 ( 81) TGATTGGG 1 chr3R:27002911-27003031 ( 42) TGATAAGT 1 chr2L:6870900-6871020 ( 53) AGATAACG 1 chr3R:7216253-7216373 ( 76) AGATTACC 1 chr3L:11953877-11953997 ( 1) AGATTGGA 1 chrX:13563082-13563202 ( 38) TGATTAGT 1 chrX:12773054-12773174 ( 1) AGATTGGC 1 chr2L:9422120-9422240 ( 82) CGATTGCC 1 chrX:19227612-19227732 ( 65) AGATAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.20458 E= 1.6e-014 -61 120 -1344 25 -1344 -1344 246 -1344 166 -1344 -1344 -1344 -1344 -1344 -1344 162 84 -1344 -1344 41 148 -1344 -63 -1344 -1344 29 211 -1344 48 61 31 -236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 1.6e-014 0.207207 0.405405 0.000000 0.387387 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.567568 0.000000 0.000000 0.432432 0.882883 0.000000 0.117117 0.000000 0.000000 0.216216 0.783784 0.000000 0.441441 0.270270 0.225225 0.063063 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATWAGV MEME-2 regular expression -------------------------------------------------------------------------------- [CTA]GAT[AT]A[GC][ACG] -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTTSA MEME-3 width = 8 sites = 38 llr = 321 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:::17 pos.-specific C 3a:a1232 probability G 7:::::61 matrix T ::::98:: bits 2.5 * 2.3 * * 2.0 * * 1.8 **** Relative 1.5 **** Entropy 1.3 ****** (12.2 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTTGA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12642566-12642686 38 1.09e-05 TCGCAGCTAA GCACTTGA GAAGTTCCAA chrX:11424637-11424757 100 1.09e-05 GGTCGTGTTC GCACTTGA TTTATGTGCA chrX:19590715-19590835 95 1.09e-05 CTCGTACTTG GCACTTGA GGTGTATGTA chr3R:16202496-16202616 12 1.09e-05 CTTCTTTTGA GCACTTGA CGTGACGGAC chr2L:8989872-8989992 59 2.15e-05 CTACCACCAT GCACTTCA AAATAGCTAA chr3L:9126382-9126502 48 2.15e-05 GCGCTACGCT GCACTTCA AATGCTCAAT chr3R:25899808-25899928 61 2.15e-05 TCGGCCAGAG GCACTTCA AAATGTATTG chr3L:16655714-16655834 17 2.15e-05 CCACCTGAAA GCACTTCA GATGCTAGGA chr2L:8784870-8784990 4 2.15e-05 AAA GCACTTCA ATTTGTCAAA chr2L:20374219-20374339 55 2.76e-05 CGTATTGATA GCACTTGC ACTATCGTCT chr3R:11168205-11168325 3 2.76e-05 AA GCACTTGC TTTTCATGAT chrX:5410362-5410482 41 4.42e-05 GAATCGCTGG CCACTTGA GTTCTTCAAG chr2R:22842612-22842732 28 4.42e-05 TGTGATTTCG GCACTCGA ATCAAGGAAG chr2R:17761795-17761915 105 4.42e-05 ATTTCCAGGT CCACTTGA AATTAGTT chr3L:7402105-7402225 15 4.42e-05 ATCGCGACCG CCACTTGA GATCCGTTCC chr3L:7842256-7842376 105 4.42e-05 GTATCGATGG GCACTCGA ATTGGGTT chr3L:6033155-6033275 38 4.42e-05 CGGGTATTAC CCACTTGA AAATTTACAA chr3L:20207079-20207199 30 5.01e-05 AATGTCGTGT GCACCTGA GTCAGCAGAT chr2R:11718802-11718922 35 5.64e-05 TCGCGGCGAA GCACTTGG AGTTTAATTT chr3L:20354467-20354587 106 6.23e-05 ATTGATAGTA GCACTTCC TGATTGA chrX:9190924-9191044 50 7.85e-05 ACTGGATTCG CCACTTCA AAATCGCACT chr3L:16671021-16671141 75 7.85e-05 GTTTTAGGTG CCACTTCA GGCCAAGTTG chrX:6201598-6201718 51 7.85e-05 TCGGTTCCCG GCACTCCA TCTCGAGAGG chrX:23012024-23012144 55 8.43e-05 AGAGCCATTA GCACCTCA ACTGATAACG chr3R:13783393-13783513 112 1.25e-04 ATTCTTTATA GCACTTCG A chr3R:26735490-26735610 20 1.25e-04 CATATCTGGC CCACTCGA CCACCGCTCA chr3L:5479571-5479691 10 1.25e-04 GTTGAAATG GCACTTAA GAAAAATAAT chr3L:9767775-9767895 18 1.25e-04 ATTTATGACG GCACTTAA TGCGTTTTCA chr3L:21283659-21283779 66 1.25e-04 AAAGTAAATA GCACTTAA CAAATTTTAA chr2R:23609246-23609366 33 1.25e-04 CGCCTGAGCG CCACTCGA GTCAATTGGA chr3R:21242303-21242423 90 1.25e-04 TAAGATAATC GCACTTCG ACCCCCATAA chr3R:9573068-9573188 44 1.28e-04 TCATTTAATG GCACCTGC GCTCAGATTT chr2L:13849264-13849384 28 1.28e-04 TATCTCTTTT GCACCTGC CTAATCCAAT chr3R:9498537-9498657 56 1.37e-04 AGCGAACAGT CCACCTGA ATTAACCTTG chr2R:7534764-7534884 67 1.46e-04 CGATTCAATT GCACTCGG CCACCTTGAA chr3L:10097554-10097674 55 1.90e-04 TTGGCTACTA GCACTTAC GTCATCGTCA chr2R:11337757-11337877 93 2.29e-04 CCGACGGTAA CCACTTAA AGATAGCGTA chr2L:4474149-4474269 109 3.59e-04 ACCAATCAAA GCAATTGA GTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12642566-12642686 1.1e-05 37_[+3]_75 chrX:11424637-11424757 1.1e-05 99_[+3]_13 chrX:19590715-19590835 1.1e-05 94_[+3]_18 chr3R:16202496-16202616 1.1e-05 11_[+3]_101 chr2L:8989872-8989992 2.2e-05 58_[+3]_54 chr3L:9126382-9126502 2.2e-05 47_[+3]_65 chr3R:25899808-25899928 2.2e-05 60_[+3]_52 chr3L:16655714-16655834 2.2e-05 16_[+3]_96 chr2L:8784870-8784990 2.2e-05 3_[+3]_109 chr2L:20374219-20374339 2.8e-05 54_[+3]_58 chr3R:11168205-11168325 2.8e-05 2_[+3]_110 chrX:5410362-5410482 4.4e-05 40_[+3]_72 chr2R:22842612-22842732 4.4e-05 27_[+3]_85 chr2R:17761795-17761915 4.4e-05 104_[+3]_8 chr3L:7402105-7402225 4.4e-05 14_[+3]_98 chr3L:7842256-7842376 4.4e-05 104_[+3]_8 chr3L:6033155-6033275 4.4e-05 37_[+3]_75 chr3L:20207079-20207199 5e-05 29_[+3]_83 chr2R:11718802-11718922 5.6e-05 34_[+3]_78 chr3L:20354467-20354587 6.2e-05 105_[+3]_7 chrX:9190924-9191044 7.9e-05 49_[+3]_63 chr3L:16671021-16671141 7.9e-05 74_[+3]_38 chrX:6201598-6201718 7.9e-05 50_[+3]_62 chrX:23012024-23012144 8.4e-05 54_[+3]_58 chr3R:13783393-13783513 0.00012 111_[+3]_1 chr3R:26735490-26735610 0.00012 19_[+3]_93 chr3L:5479571-5479691 0.00012 9_[+3]_103 chr3L:9767775-9767895 0.00012 17_[+3]_95 chr3L:21283659-21283779 0.00012 65_[+3]_47 chr2R:23609246-23609366 0.00012 32_[+3]_80 chr3R:21242303-21242423 0.00012 89_[+3]_23 chr3R:9573068-9573188 0.00013 43_[+3]_69 chr2L:13849264-13849384 0.00013 27_[+3]_85 chr3R:9498537-9498657 0.00014 55_[+3]_57 chr2R:7534764-7534884 0.00015 66_[+3]_46 chr3L:10097554-10097674 0.00019 54_[+3]_58 chr2R:11337757-11337877 0.00023 92_[+3]_20 chr2L:4474149-4474269 0.00036 108_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTTSA width=8 seqs=38 chr2R:12642566-12642686 ( 38) GCACTTGA 1 chrX:11424637-11424757 ( 100) GCACTTGA 1 chrX:19590715-19590835 ( 95) GCACTTGA 1 chr3R:16202496-16202616 ( 12) GCACTTGA 1 chr2L:8989872-8989992 ( 59) GCACTTCA 1 chr3L:9126382-9126502 ( 48) GCACTTCA 1 chr3R:25899808-25899928 ( 61) GCACTTCA 1 chr3L:16655714-16655834 ( 17) GCACTTCA 1 chr2L:8784870-8784990 ( 4) GCACTTCA 1 chr2L:20374219-20374339 ( 55) GCACTTGC 1 chr3R:11168205-11168325 ( 3) GCACTTGC 1 chrX:5410362-5410482 ( 41) CCACTTGA 1 chr2R:22842612-22842732 ( 28) GCACTCGA 1 chr2R:17761795-17761915 ( 105) CCACTTGA 1 chr3L:7402105-7402225 ( 15) CCACTTGA 1 chr3L:7842256-7842376 ( 105) GCACTCGA 1 chr3L:6033155-6033275 ( 38) CCACTTGA 1 chr3L:20207079-20207199 ( 30) GCACCTGA 1 chr2R:11718802-11718922 ( 35) GCACTTGG 1 chr3L:20354467-20354587 ( 106) GCACTTCC 1 chrX:9190924-9191044 ( 50) CCACTTCA 1 chr3L:16671021-16671141 ( 75) CCACTTCA 1 chrX:6201598-6201718 ( 51) GCACTCCA 1 chrX:23012024-23012144 ( 55) GCACCTCA 1 chr3R:13783393-13783513 ( 112) GCACTTCG 1 chr3R:26735490-26735610 ( 20) CCACTCGA 1 chr3L:5479571-5479691 ( 10) GCACTTAA 1 chr3L:9767775-9767895 ( 18) GCACTTAA 1 chr3L:21283659-21283779 ( 66) GCACTTAA 1 chr2R:23609246-23609366 ( 33) CCACTCGA 1 chr3R:21242303-21242423 ( 90) GCACTTCG 1 chr3R:9573068-9573188 ( 44) GCACCTGC 1 chr2L:13849264-13849384 ( 28) GCACCTGC 1 chr3R:9498537-9498657 ( 56) CCACCTGA 1 chr2R:7534764-7534884 ( 67) GCACTCGG 1 chr3L:10097554-10097674 ( 55) GCACTTAC 1 chr2R:11337757-11337877 ( 93) CCACTTAA 1 chr2L:4474149-4474269 ( 109) GCAATTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.73116 E= 1.2e+001 -1189 58 202 -1189 -1189 250 -1189 -1189 166 -1189 -1189 -1189 -359 246 -1189 -1189 -1189 -42 -1189 142 -1189 -16 -1189 137 -127 84 161 -1189 122 -16 -78 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.2e+001 0.000000 0.263158 0.736842 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.026316 0.973684 0.000000 0.000000 0.000000 0.131579 0.000000 0.868421 0.000000 0.157895 0.000000 0.842105 0.131579 0.315789 0.552632 0.000000 0.736842 0.157895 0.105263 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTTSA MEME-3 regular expression -------------------------------------------------------------------------------- [GC]CACTT[GC]A -------------------------------------------------------------------------------- Time 19.55 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCSRCC MEME-4 width = 8 sites = 6 llr = 72 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C :aaa72aa probability G a:::35:: matrix T :::::::: bits 2.5 **** ** 2.3 **** ** 2.0 **** ** 1.8 **** ** Relative 1.5 ***** ** Entropy 1.3 ***** ** (17.3 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCCGCC consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7402105-7402225 82 1.01e-06 GGACTCGAGT GCCCCGCC CAATTAGAAT chr2R:22246345-22246465 32 2.04e-06 TTTTTTGTTG GCCCGGCC AAACTAATTA chrX:23012024-23012144 81 2.04e-06 CGATGATTCA GCCCGGCC CCCAAAAAGC chr3R:30428569-30428689 74 3.80e-06 TTAGAAATCT GCCCCACC GGAGGCAGAT chr2L:1709481-1709601 7 3.80e-06 CAGTAT GCCCCACC TATCTAGGGA chr3L:9126382-9126502 107 4.79e-06 caccaccact gccccccc acccac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7402105-7402225 1e-06 81_[+4]_31 chr2R:22246345-22246465 2e-06 31_[+4]_81 chrX:23012024-23012144 2e-06 80_[+4]_32 chr3R:30428569-30428689 3.8e-06 73_[+4]_39 chr2L:1709481-1709601 3.8e-06 6_[+4]_106 chr3L:9126382-9126502 4.8e-06 106_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCSRCC width=8 seqs=6 chr3L:7402105-7402225 ( 82) GCCCCGCC 1 chr2R:22246345-22246465 ( 32) GCCCGGCC 1 chrX:23012024-23012144 ( 81) GCCCGGCC 1 chr3R:30428569-30428689 ( 74) GCCCCACC 1 chr2L:1709481-1709601 ( 7) GCCCCACC 1 chr3L:9126382-9126502 ( 107) GCCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 1.0e+003 -923 -923 246 -923 -923 250 -923 -923 -923 250 -923 -923 -923 250 -923 -923 -923 191 88 -923 7 -8 146 -923 -923 250 -923 -923 -923 250 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.333333 0.166667 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCSRCC MEME-4 regular expression -------------------------------------------------------------------------------- GCCC[CG][GA]CC -------------------------------------------------------------------------------- Time 25.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGCYGG MEME-5 width = 8 sites = 17 llr = 162 E-value = 4.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::::1:: pos.-specific C ::2:a31: probability G :7:a:19a matrix T 938::6:: bits 2.5 ** * 2.3 ** ** 2.0 ** ** 1.8 ** ** Relative 1.5 ** ** Entropy 1.3 ** ** ** (13.7 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGTGCTGG consensus TC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12886628-12886748 4 6.52e-06 TTA TGTGCTGG CAAAATTGAT chr2L:12708731-12708851 58 6.52e-06 AAACAGTTTC TGTGCTGG TTATGTATTT chr2R:11790832-11790952 18 1.01e-05 TTTACTGCTC TGTGCCGG CAGTAAATGG chr3R:16190113-16190233 31 1.01e-05 AACTTGTTAA TGTGCCGG TACAAACTAT chr2R:11430536-11430656 46 1.36e-05 TTAATCTAAT TGCGCTGG TCATGCCGAA chr3L:4255886-4256006 85 1.36e-05 AGACAAACAC TGCGCTGG CTGGAAATGC chr2R:18020096-18020216 58 1.36e-05 TTTAGCTGAT TGCGCTGG GCCCCTAAAC chr2R:12359135-12359255 29 1.56e-05 GCCCCTCGCG TGCGCCGG AATCGCCACT chr3R:20511142-20511262 28 2.73e-05 AATAAAACAG TTTGCTGG TTGGTTTTGA chr3L:448427-448547 113 2.73e-05 AAATGTTAGT TTTGCTGG chr2L:1709481-1709601 77 2.73e-05 CCGAAAATGC TTTGCTGG CCCGTGGTAA chrX:8110010-8110130 20 3.36e-05 TCACTCAACT TTTGCCGG CCTTTTCGCC chr2L:13850190-13850310 19 3.36e-05 CCGAGGGAAT TTTGCCGG TGGAGCCAAT chr3R:22522135-22522255 46 3.73e-05 TTAGAATCGA TGTGCGGG CGTGGGAATA chr2L:16884834-16884954 103 5.55e-05 CTGAGGTGAG TGTGCAGG ATGACACCTG chr3L:12074384-12074504 49 6.82e-05 TACTGCTGAT TGTGCTCG TCACAGTCTG chr3L:21204416-21204536 67 6.82e-05 TAGCAGATGG AGTGCTGG GTATTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12886628-12886748 6.5e-06 3_[+5]_109 chr2L:12708731-12708851 6.5e-06 57_[+5]_55 chr2R:11790832-11790952 1e-05 17_[+5]_95 chr3R:16190113-16190233 1e-05 30_[+5]_82 chr2R:11430536-11430656 1.4e-05 45_[+5]_67 chr3L:4255886-4256006 1.4e-05 84_[+5]_28 chr2R:18020096-18020216 1.4e-05 57_[+5]_55 chr2R:12359135-12359255 1.6e-05 28_[+5]_84 chr3R:20511142-20511262 2.7e-05 27_[+5]_85 chr3L:448427-448547 2.7e-05 112_[+5] chr2L:1709481-1709601 2.7e-05 76_[+5]_36 chrX:8110010-8110130 3.4e-05 19_[+5]_93 chr2L:13850190-13850310 3.4e-05 18_[+5]_94 chr3R:22522135-22522255 3.7e-05 45_[+5]_67 chr2L:16884834-16884954 5.5e-05 102_[+5]_10 chr3L:12074384-12074504 6.8e-05 48_[+5]_64 chr3L:21204416-21204536 6.8e-05 66_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGCYGG width=8 seqs=17 chrX:12886628-12886748 ( 4) TGTGCTGG 1 chr2L:12708731-12708851 ( 58) TGTGCTGG 1 chr2R:11790832-11790952 ( 18) TGTGCCGG 1 chr3R:16190113-16190233 ( 31) TGTGCCGG 1 chr2R:11430536-11430656 ( 46) TGCGCTGG 1 chr3L:4255886-4256006 ( 85) TGCGCTGG 1 chr2R:18020096-18020216 ( 58) TGCGCTGG 1 chr2R:12359135-12359255 ( 29) TGCGCCGG 1 chr3R:20511142-20511262 ( 28) TTTGCTGG 1 chr3L:448427-448547 ( 113) TTTGCTGG 1 chr2L:1709481-1709601 ( 77) TTTGCTGG 1 chrX:8110010-8110130 ( 20) TTTGCCGG 1 chr2L:13850190-13850310 ( 19) TTTGCCGG 1 chr3R:22522135-22522255 ( 46) TGTGCGGG 1 chr2L:16884834-16884954 ( 103) TGTGCAGG 1 chr3L:12074384-12074504 ( 49) TGTGCTCG 1 chr3L:21204416-21204536 ( 67) AGTGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 4.2e+004 -243 -1073 -1073 153 -1073 -1073 196 -14 -1073 41 -1073 124 -1073 -1073 246 -1073 -1073 250 -1073 -1073 -243 74 -162 86 -1073 -158 238 -1073 -1073 -1073 246 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.2e+004 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 0.705882 0.294118 0.000000 0.235294 0.000000 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.294118 0.058824 0.588235 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCYGG MEME-5 regular expression -------------------------------------------------------------------------------- T[GT][TC]GC[TC]GG -------------------------------------------------------------------------------- Time 31.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20462530-20462650 2.63e-02 69_[+1(2.01e-05)]_43 chrX:16674677-16674797 2.55e-01 120 chr2R:19434462-19434582 9.89e-02 120 chrX:6201598-6201718 1.71e-03 50_[+3(7.85e-05)]_43_[+2(2.97e-05)]_\ 11 chr2L:8784870-8784990 1.73e-02 3_[+3(2.15e-05)]_109 chr2L:5277748-5277868 4.81e-01 120 chr3L:21069587-21069707 9.46e-02 120 chrX:13818244-13818364 8.34e-01 120 chr2L:5337298-5337418 5.56e-02 120 chr2L:6426467-6426587 1.44e-02 55_[+2(7.09e-05)]_57 chr3R:11247004-11247124 5.93e-02 12_[+1(8.59e-05)]_100 chr3L:6033155-6033275 1.57e-02 37_[+3(4.42e-05)]_75 chr2L:12453540-12453660 4.75e-02 120 chr2L:5791291-5791411 4.04e-01 120 chr2R:10079251-10079371 2.35e-01 120 chrX:18509569-18509689 4.35e-01 120 chr3R:17759071-17759191 1.88e-01 120 chr3L:7842256-7842376 1.32e-02 104_[+3(4.42e-05)]_8 chr2L:13849264-13849384 2.00e-03 120 chr3R:21746026-21746146 1.16e-01 33_[+1(8.59e-05)]_79 chr3L:6261382-6261502 3.08e-01 25_[+1(8.59e-05)]_87 chr3R:16202496-16202616 1.02e-02 11_[+3(1.09e-05)]_101 chrX:9102264-9102384 2.84e-01 120 chr2R:15941914-15942034 3.86e-02 95_[+1(8.59e-05)]_17 chr2L:18115243-18115363 9.54e-01 120 chr3L:3547315-3547435 1.01e-01 120 chr3R:11168205-11168325 4.78e-02 2_[+3(2.76e-05)]_110 chr2L:12444671-12444791 5.83e-02 109_[+2(7.09e-05)]_3 chrX:18885469-18885589 6.50e-01 120 chr2R:21830236-21830356 5.48e-01 120 chr3L:10680317-10680437 3.71e-01 28_[+2(7.09e-05)]_84 chr3R:26737129-26737249 5.82e-02 120 chr3L:7402105-7402225 3.22e-05 14_[+3(4.42e-05)]_59_[+4(1.01e-06)]_\ 31 chr2R:18020096-18020216 2.58e-04 57_[+5(1.36e-05)]_55 chr3L:6497334-6497454 3.59e-01 120 chr2R:14244634-14244754 5.94e-02 120 chr2L:9422120-9422240 1.32e-01 120 chrX:6691450-6691570 4.10e-02 120 chr2L:10848933-10849053 8.15e-04 70_[+1(8.59e-05)]_42 chr3R:12739381-12739501 2.62e-01 37_[+2(7.09e-05)]_75 chr3R:13298831-13298951 1.10e-01 120 chr3L:3758761-3758881 3.17e-01 120 chr2R:18051427-18051547 1.46e-02 77_[+1(8.59e-05)]_35 chr3R:21242303-21242423 1.03e-03 76_[+2(2.97e-05)]_36 chr2R:13011049-13011169 1.86e-02 120 chr2R:7534764-7534884 4.33e-03 120 chrX:10775072-10775192 4.08e-01 120 chr2L:3640714-3640834 1.48e-02 26_[+1(8.59e-05)]_86 chr2R:14983718-14983838 3.94e-03 6_[+2(7.09e-05)]_106 chrX:19502060-19502180 2.21e-01 120 chrX:5948944-5949064 3.85e-01 120 chr3R:22522135-22522255 1.44e-02 45_[+5(3.73e-05)]_67 chr2L:16884834-16884954 1.29e-02 102_[+5(5.55e-05)]_10 chr2R:15885115-15885235 1.76e-02 120 chr3R:20319117-20319237 5.79e-02 120 chr2L:8500117-8500237 2.34e-01 61_[+2(7.09e-05)]_51 chr2L:20762957-20763077 3.73e-02 80_[+1(8.59e-05)]_32 chr3L:7934327-7934447 3.82e-01 120 chr3R:27023558-27023678 2.30e-01 120 chrX:12773054-12773174 1.52e-02 60_[+1(2.01e-05)]_52 chr3R:17137351-17137471 7.16e-01 120 chr3L:20354467-20354587 2.05e-02 105_[+3(6.23e-05)]_7 chr2R:12323030-12323150 5.64e-02 120 chrX:17711593-17711713 9.08e-03 24_[+2(7.09e-05)]_88 chr2L:8372371-8372491 6.54e-03 86_[+4(4.29e-05)]_26 chr3R:25757686-25757806 3.14e-03 68_[+2(2.97e-05)]_44 chrX:19227612-19227732 4.70e-01 120 chr3L:7944089-7944209 6.78e-02 120 chr2L:321246-321366 4.68e-02 120 chr3L:11622871-11622991 3.00e-01 120 chr2L:21170007-21170127 4.82e-01 120 chrX:16900936-16901056 4.08e-02 12_[+1(2.01e-05)]_100 chr3L:11533553-11533673 4.88e-01 120 chr2R:23603581-23603701 8.15e-03 52_[+2(2.97e-05)]_60 chrX:23012024-23012144 6.24e-05 54_[+3(8.43e-05)]_18_[+4(2.04e-06)]_\ 32 chr2R:12377416-12377536 5.04e-01 120 chr3R:16190113-16190233 1.38e-02 30_[+5(1.01e-05)]_82 chr3L:20220534-20220654 8.95e-02 120 chr2L:15609910-15610030 6.12e-01 120 chr2L:11739335-11739455 3.16e-02 120 chrX:10841327-10841447 9.72e-02 120 chr2L:2169558-2169678 4.43e-02 46_[+2(8.21e-05)]_66 chr3L:22690108-22690228 6.43e-01 120 chr2R:13122930-13123050 7.73e-01 120 chr2L:18605698-18605818 7.17e-01 120 chr2R:10852378-10852498 1.30e-01 120 chr3R:25260830-25260950 4.92e-03 2_[+1(8.59e-05)]_77_[+2(7.09e-05)]_\ 25 chr2R:19138427-19138547 5.96e-01 120 chrX:20934634-20934754 5.53e-03 79_[+2(4.05e-05)]_33 chr2R:18054692-18054812 2.31e-01 120 chr2L:1641621-1641741 5.74e-02 7_[+1(8.59e-05)]_105 chr2L:17420479-17420599 8.14e-01 120 chr3R:9498537-9498657 2.25e-01 120 chr2L:3361938-3362058 8.85e-01 120 chr3R:23343084-23343204 1.16e-01 120 chr3L:16655714-16655834 7.74e-03 16_[+3(2.15e-05)]_17_[+1(8.59e-05)]_\ 71 chr2R:23609246-23609366 5.30e-03 120 chr2R:18058019-18058139 3.32e-02 106_[+1(8.59e-05)]_6 chr2R:22078266-22078386 6.85e-01 120 chr3R:11461531-11461651 5.57e-01 120 chr3R:25899808-25899928 3.57e-03 60_[+3(2.15e-05)]_52 chr3L:21283659-21283779 1.14e-02 120 chr2R:22246345-22246465 7.25e-03 31_[+4(2.04e-06)]_81 chr3L:6933747-6933867 3.12e-03 8_[+2(7.09e-05)]_47_[+1(2.01e-05)]_\ 49 chr3R:15975337-15975457 1.86e-01 120 chr2L:17389874-17389994 5.84e-02 120 chr2L:4835265-4835385 4.72e-02 120 chr3L:8691455-8691575 3.64e-01 120 chr2L:4998749-4998869 4.99e-01 120 chr3R:18227439-18227559 8.47e-02 120 chr3L:4551918-4552038 2.30e-01 120 chr3L:9767775-9767895 3.17e-02 120 chr3R:7216253-7216373 1.64e-02 120 chrX:9639723-9639843 8.36e-02 120 chr3L:5479571-5479691 7.53e-02 120 chr3L:9126382-9126502 9.49e-04 47_[+3(2.15e-05)]_51_[+4(4.79e-06)]_\ 6 chr3R:9573068-9573188 1.74e-02 120 chr3R:14461436-14461556 2.08e-01 120 chr2R:8715312-8715432 5.69e-01 120 chr3L:11184841-11184961 2.68e-01 120 chr2R:9744676-9744796 2.12e-01 120 chr3L:20207079-20207199 2.19e-02 29_[+3(5.01e-05)]_83 chr3R:23991486-23991606 4.73e-01 120 chr2R:12355469-12355589 1.57e-01 120 chrX:8879990-8880110 8.34e-02 120 chr3L:16671021-16671141 4.22e-02 74_[+3(7.85e-05)]_38 chr2L:8949224-8949344 5.66e-01 120 chr3L:15517630-15517750 7.92e-02 89_[+2(7.09e-05)]_23 chr3R:26735490-26735610 8.06e-03 120 chr2L:6870900-6871020 7.39e-01 120 chr2R:17761795-17761915 5.83e-03 104_[+3(4.42e-05)]_8 chr3R:29681374-29681494 5.62e-02 120 chr2R:22599483-22599603 1.14e-02 120 chr3L:10097554-10097674 1.44e-01 120 chr3L:21204416-21204536 1.10e-02 3_[+2(2.97e-05)]_55_[+5(6.82e-05)]_\ 46 chrX:9190924-9191044 2.46e-03 49_[+3(7.85e-05)]_63 chr2L:2801901-2802021 2.31e-01 120 chrX:17581086-17581206 2.65e-01 120 chr2L:1709481-1709601 5.21e-07 6_[+4(3.80e-06)]_30_[+2(2.97e-05)]_\ 24_[+5(2.73e-05)]_36 chr3R:20602738-20602858 1.09e-01 120 chr2R:10079505-10079625 2.69e-01 120 chrX:19590715-19590835 2.01e-02 94_[+3(1.09e-05)]_18 chr3R:16173623-16173743 2.95e-01 120 chrX:16439329-16439449 1.04e-03 37_[+2(8.21e-05)]_75 chr3R:27002911-27003031 1.73e-01 120 chr2R:11790832-11790952 6.09e-02 17_[+5(1.01e-05)]_95 chr2L:20374219-20374339 5.23e-02 54_[+3(2.76e-05)]_58 chrX:13678109-13678229 1.03e-01 83_[+2(8.21e-05)]_29 chr3R:12210603-12210723 1.69e-02 120 chr2L:1707102-1707222 9.90e-01 120 chr3L:16573232-16573352 1.62e-02 120 chr2L:8989872-8989992 3.91e-04 58_[+3(2.15e-05)]_54 chrX:5948009-5948129 1.26e-01 89_[+2(2.97e-05)]_23 chr3R:8518704-8518824 7.68e-02 41_[+1(2.01e-05)]_71 chrX:3874305-3874425 9.65e-03 6_[+1(8.59e-05)]_106 chr2R:21836592-21836712 8.75e-01 120 chr2R:22842612-22842732 4.43e-04 27_[+3(4.42e-05)]_85 chr3R:16007656-16007776 7.40e-02 120 chr3L:22891183-22891303 1.51e-02 26_[+1(2.01e-05)]_86 chr3R:23217271-23217391 2.91e-01 120 chr2L:8940816-8940936 9.16e-04 120 chr2L:14636375-14636495 3.23e-01 120 chr2R:17710885-17711005 1.25e-01 32_[+2(2.97e-05)]_33_[+2(7.09e-05)]_\ 39 chr2R:18352403-18352523 8.40e-01 120 chr2R:21832460-21832580 3.04e-01 120 chrX:5410362-5410482 1.26e-03 40_[+3(4.42e-05)]_72 chr2L:13850190-13850310 6.80e-04 2_[+4(8.15e-05)]_8_[+5(3.36e-05)]_\ 94 chrX:16922758-16922878 1.03e-01 120 chr2L:16292-16412 1.39e-03 86_[+1(8.59e-05)]_26 chrX:1176109-1176229 4.65e-01 120 chr3R:13783393-13783513 1.37e-02 91_[+1(3.12e-05)]_21 chr2R:11337757-11337877 2.82e-02 120 chr3L:448427-448547 9.81e-04 56_[+5(8.51e-05)]_24_[+2(2.97e-05)]_\ 16_[+5(2.73e-05)] chrX:21027262-21027382 1.85e-01 120 chr2L:5806005-5806125 4.33e-01 120 chrX:11424637-11424757 4.31e-03 99_[+3(1.09e-05)]_13 chr3L:17482353-17482473 9.69e-01 120 chr3L:3421541-3421661 3.90e-01 120 chrX:15888898-15889018 1.90e-01 120 chrX:15766634-15766754 9.32e-01 120 chr3R:11982119-11982239 1.58e-02 55_[+2(7.09e-05)]_57 chr2R:23070187-23070307 1.80e-02 120 chr2L:8983308-8983428 1.28e-01 120 chr3R:14710543-14710663 3.14e-01 120 chr2R:21642850-21642970 3.65e-01 120 chr2R:11718802-11718922 9.11e-03 34_[+3(5.64e-05)]_78 chr3L:19812340-19812460 8.54e-01 120 chrX:3708012-3708132 3.91e-02 120 chr2R:12855583-12855703 9.93e-01 120 chr2L:9014222-9014342 3.94e-01 120 chrX:9596998-9597118 3.95e-01 120 chr2L:12701641-12701761 6.39e-02 29_[+1(8.59e-05)]_83 chr3L:4255886-4256006 3.49e-05 84_[+5(1.36e-05)]_28 chr3R:16155373-16155493 5.66e-02 120 chr3R:30428569-30428689 5.68e-03 73_[+4(3.80e-06)]_39 chr2L:12708731-12708851 1.87e-02 57_[+5(6.52e-06)]_55 chr2R:23717005-23717125 1.55e-03 94_[+1(8.59e-05)]_18 chr2L:5798751-5798871 8.84e-02 93_[+1(8.59e-05)]_19 chrX:12886628-12886748 2.33e-03 3_[+5(6.52e-06)]_109 chr3L:9845558-9845678 2.32e-01 120 chrX:13563082-13563202 2.48e-01 120 chr3R:20544212-20544332 2.63e-02 120 chrX:2637802-2637922 7.36e-02 77_[+2(2.97e-05)]_35 chr2L:4474149-4474269 4.49e-01 120 chr3L:11112933-11113053 2.67e-01 120 chr3L:4106781-4106901 3.97e-02 120 chr3R:16985273-16985393 9.75e-01 120 chrX:8490732-8490852 1.91e-02 78_[+1(8.59e-05)]_34 chr3R:19873997-19874117 4.20e-02 65_[+1(3.12e-05)]_47 chr2R:11430536-11430656 6.75e-03 45_[+5(1.36e-05)]_67 chrX:11417661-11417781 2.64e-01 120 chrX:19592374-19592494 4.94e-02 120 chr3R:20511142-20511262 2.32e-02 27_[+5(2.73e-05)]_85 chr2R:19385390-19385510 2.39e-02 120 chr2L:1121452-1121572 7.23e-03 67_[+1(2.01e-05)]_45 chr3L:11290723-11290843 9.77e-01 120 chr3R:22520638-22520758 5.23e-02 120 chrX:8110010-8110130 5.74e-03 19_[+5(3.36e-05)]_93 chr3R:29783428-29783548 8.93e-03 17_[+2(2.97e-05)]_80_[+2(4.05e-05)]_\ 7 chr2R:17338340-17338460 1.72e-01 52_[+1(8.59e-05)]_60 chr3R:31014446-31014566 1.63e-02 41_[+2(7.09e-05)]_15_[+2(2.97e-05)]_\ 48 chr3L:16367831-16367951 9.51e-01 120 chrX:18486471-18486591 1.98e-02 120 chr2R:11356608-11356728 5.51e-02 27_[+2(2.97e-05)]_85 chr3L:337288-337408 5.99e-02 120 chrX:5955296-5955416 8.62e-03 45_[+1(2.01e-05)]_67 chrX:10747231-10747351 9.03e-01 120 chr3L:18638170-18638290 5.05e-03 85_[+1(2.01e-05)]_27 chr2R:12359135-12359255 9.24e-03 28_[+5(1.56e-05)]_84 chr2R:16592656-16592776 3.49e-02 120 chrX:16934588-16934708 5.11e-02 120 chr3R:5836674-5836794 1.59e-01 120 chr3L:10095471-10095591 8.99e-01 120 chr3R:12211716-12211836 2.05e-02 71_[+1(2.01e-05)]_41 chr3R:9700759-9700879 6.11e-01 120 chrX:3875081-3875201 6.34e-01 120 chr2L:12590108-12590228 9.65e-02 120 chr3L:12074384-12074504 9.25e-02 48_[+5(6.82e-05)]_64 chr3R:15891353-15891473 1.02e-01 11_[+1(8.59e-05)]_101 chr3R:4446604-4446724 5.38e-02 59_[+1(2.01e-05)]_53 chrX:16702369-16702489 8.95e-01 120 chr2R:11336626-11336746 5.06e-01 120 chr2R:12642566-12642686 4.30e-02 37_[+3(1.09e-05)]_75 chr2L:6654783-6654903 1.30e-01 28_[+1(3.12e-05)]_84 chr3R:30599543-30599663 6.53e-02 120 chr2R:18049889-18050009 6.98e-01 120 chrX:9662000-9662120 1.93e-03 43_[+1(2.01e-05)]_69 chrX:15758997-15759117 4.09e-01 120 chr3L:11953877-11953997 4.50e-01 120 chr3R:27016722-27016842 4.31e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************