******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ewg.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:993876-993996 1.0000 120 chr3R:24828397-24828517 1.0000 120 chrX:19961032-19961152 1.0000 120 chr2R:11846154-11846274 1.0000 120 chr3L:19601531-19601651 1.0000 120 chr2L:13355077-13355197 1.0000 120 chr3R:28520512-28520632 1.0000 120 chr2R:13129040-13129160 1.0000 120 chr3R:10640954-10641074 1.0000 120 chr2R:10729251-10729371 1.0000 120 chr2L:5539194-5539314 1.0000 120 chr3R:18216028-18216148 1.0000 120 chr3L:20306295-20306415 1.0000 120 chrX:1981862-1981982 1.0000 120 chr3R:15369881-15370001 1.0000 120 chr2L:5956292-5956412 1.0000 120 chrX:15385583-15385703 1.0000 120 chr3R:28047311-28047431 1.0000 120 chr3R:10226407-10226527 1.0000 120 chr2R:8943108-8943228 1.0000 120 chrX:932996-933116 1.0000 120 chr2R:6040281-6040401 1.0000 120 chrX:11983978-11984098 1.0000 120 chr3L:20426050-20426170 1.0000 120 chr2R:14201218-14201338 1.0000 120 chr2R:10249110-10249230 1.0000 120 chrX:11930875-11930995 1.0000 120 chr3R:10224719-10224839 1.0000 120 chr2R:24116677-24116797 1.0000 120 chr2L:10310780-10310900 1.0000 120 chr3L:21625674-21625794 1.0000 120 chr2R:9247207-9247327 1.0000 120 chrX:2383588-2383708 1.0000 120 chrX:14266196-14266316 1.0000 120 chr2R:6891538-6891658 1.0000 120 chr2R:24607598-24607718 1.0000 120 chr3L:5920963-5921083 1.0000 120 chr3R:25032825-25032945 1.0000 120 chr2R:5668310-5668430 1.0000 120 chr3R:18949243-18949363 1.0000 120 chr2L:21378144-21378264 1.0000 120 chr3L:7189940-7190060 1.0000 120 chr2L:5050998-5051118 1.0000 120 chr2L:2815809-2815929 1.0000 120 chr2L:11086512-11086632 1.0000 120 chr2L:5109199-5109319 1.0000 120 chr2R:22870963-22871083 1.0000 120 chr3R:17902351-17902471 1.0000 120 chr2R:15727247-15727367 1.0000 120 chr3L:19994204-19994324 1.0000 120 chr4:483815-483935 1.0000 120 chr3R:5376701-5376821 1.0000 120 chr2R:16765973-16766093 1.0000 120 chr3L:1627038-1627158 1.0000 120 chr3L:8576576-8576696 1.0000 120 chr2L:10373974-10374094 1.0000 120 chrX:2259903-2260023 1.0000 120 chr3R:21775864-21775984 1.0000 120 chrX:2061964-2062084 1.0000 120 chr2L:6011276-6011396 1.0000 120 chr3R:27662967-27663087 1.0000 120 chr3L:2653154-2653274 1.0000 120 chr3R:5172115-5172235 1.0000 120 chr3R:24514757-24514877 1.0000 120 chr2L:14408532-14408652 1.0000 120 chr2L:153298-153418 1.0000 120 chr2L:19586489-19586609 1.0000 120 chr3R:29969725-29969845 1.0000 120 chr3L:19237923-19238043 1.0000 120 chr2L:3090383-3090503 1.0000 120 chr3L:9643945-9644065 1.0000 120 chr2L:10435607-10435727 1.0000 120 chr3R:22031911-22032031 1.0000 120 chr3R:11563283-11563403 1.0000 120 chr2L:5314899-5315019 1.0000 120 chr2R:16071130-16071250 1.0000 120 chr4:305807-305927 1.0000 120 chr3L:267555-267675 1.0000 120 chrX:10627526-10627646 1.0000 120 chr2R:18718074-18718194 1.0000 120 chrX:13669426-13669546 1.0000 120 chr3R:19508527-19508647 1.0000 120 chr2L:3718008-3718128 1.0000 120 chr2R:22109115-22109235 1.0000 120 chrX:8187162-8187282 1.0000 120 chr3R:12451989-12452109 1.0000 120 chr3R:7265913-7266033 1.0000 120 chr2L:18009785-18009905 1.0000 120 chr3R:20866315-20866435 1.0000 120 chr3L:19542985-19543105 1.0000 120 chrX:18860184-18860304 1.0000 120 chr3L:22273855-22273975 1.0000 120 chr3L:12748866-12748986 1.0000 120 chr3R:7394178-7394298 1.0000 120 chr3L:8241068-8241188 1.0000 120 chr3L:7601560-7601680 1.0000 120 chr3R:28146449-28146569 1.0000 120 chr2L:20713801-20713921 1.0000 120 chr3R:9739965-9740085 1.0000 120 chr3R:4083886-4084006 1.0000 120 chr2L:10376397-10376517 1.0000 120 chr2L:1346165-1346285 1.0000 120 chr2L:15435046-15435166 1.0000 120 chr3L:20541314-20541434 1.0000 120 chr3L:4188059-4188179 1.0000 120 chrX:16844528-16844648 1.0000 120 chr3R:31621973-31622093 1.0000 120 chr2L:19516180-19516300 1.0000 120 chr2L:15200585-15200705 1.0000 120 chr3R:11542958-11543078 1.0000 120 chrX:12922492-12922612 1.0000 120 chr3R:18269955-18270075 1.0000 120 chr3L:5678330-5678450 1.0000 120 chr2L:21075238-21075358 1.0000 120 chrX:10906606-10906726 1.0000 120 chr2L:1082844-1082964 1.0000 120 chr3R:25131189-25131309 1.0000 120 chr2R:5749484-5749604 1.0000 120 chr2R:11442381-11442501 1.0000 120 chr2R:10350052-10350172 1.0000 120 chr2L:13215137-13215257 1.0000 120 chr2R:24031170-24031290 1.0000 120 chr2R:12266085-12266205 1.0000 120 chr3L:20104767-20104887 1.0000 120 chr2R:24739355-24739475 1.0000 120 chr2R:13106205-13106325 1.0000 120 chr3L:1661882-1662002 1.0000 120 chr3L:6843506-6843626 1.0000 120 chr2R:16637250-16637370 1.0000 120 chr2L:18887026-18887146 1.0000 120 chr3R:24485435-24485555 1.0000 120 chr2R:15115138-15115258 1.0000 120 chr2L:16671082-16671202 1.0000 120 chr3L:3123463-3123583 1.0000 120 chr2L:4852744-4852864 1.0000 120 chr2L:2400128-2400248 1.0000 120 chr2R:951255-951375 1.0000 120 chr3R:29195055-29195175 1.0000 120 chr3R:21821794-21821914 1.0000 120 chr3R:25969058-25969178 1.0000 120 chr3L:152738-152858 1.0000 120 chr3R:16427693-16427813 1.0000 120 chr2L:21148361-21148481 1.0000 120 chr3L:4086019-4086139 1.0000 120 chrX:1508380-1508500 1.0000 120 chr3R:13155640-13155760 1.0000 120 chr3L:21279278-21279398 1.0000 120 chr2R:5804587-5804707 1.0000 120 chr2R:24810484-24810604 1.0000 120 chr2L:14134279-14134399 1.0000 120 chr2R:24910481-24910601 1.0000 120 chr2L:21071516-21071636 1.0000 120 chr2R:22454656-22454776 1.0000 120 chrX:5637643-5637763 1.0000 120 chrX:15062774-15062894 1.0000 120 chr3R:4291559-4291679 1.0000 120 chrX:6081394-6081514 1.0000 120 chr2L:8303259-8303379 1.0000 120 chrX:1692634-1692754 1.0000 120 chrX:16987058-16987178 1.0000 120 chr2L:21381518-21381638 1.0000 120 chr2R:14755817-14755937 1.0000 120 chr2R:16764386-16764506 1.0000 120 chr3R:5387986-5388106 1.0000 120 chr2R:24524577-24524697 1.0000 120 chr2L:1672513-1672633 1.0000 120 chr2L:1048982-1049102 1.0000 120 chr2R:9658244-9658364 1.0000 120 chr3R:17506997-17507117 1.0000 120 chr2L:2677650-2677770 1.0000 120 chr3L:17149993-17150113 1.0000 120 chr2L:18321077-18321197 1.0000 120 chr3L:9751769-9751889 1.0000 120 chrX:22480729-22480849 1.0000 120 chr2R:10798710-10798830 1.0000 120 chr3L:9774118-9774238 1.0000 120 chr3R:22470214-22470334 1.0000 120 chr3R:5413722-5413842 1.0000 120 chrX:8694210-8694330 1.0000 120 chr3R:7639513-7639633 1.0000 120 chr3L:1629282-1629402 1.0000 120 chrX:14599554-14599674 1.0000 120 chr3R:5523367-5523487 1.0000 120 chr2R:18690706-18690826 1.0000 120 chr2L:16691620-16691740 1.0000 120 chr2R:22354696-22354816 1.0000 120 chr3R:24457169-24457289 1.0000 120 chrX:2636424-2636544 1.0000 120 chr2L:20341823-20341943 1.0000 120 chr2L:2212566-2212686 1.0000 120 chrX:282005-282125 1.0000 120 chr2R:24570562-24570682 1.0000 120 chr3L:17148074-17148194 1.0000 120 chr3L:12328962-12329082 1.0000 120 chrX:10621490-10621610 1.0000 120 chr3L:7077414-7077534 1.0000 120 chrX:12568603-12568723 1.0000 120 chrX:12389296-12389416 1.0000 120 chr3L:12853576-12853696 1.0000 120 chrX:15982764-15982884 1.0000 120 chrX:17611592-17611712 1.0000 120 chr2L:80185-80305 1.0000 120 chrX:13669626-13669746 1.0000 120 chr4:253314-253434 1.0000 120 chr2L:10053692-10053812 1.0000 120 chr2L:7358912-7359032 1.0000 120 chrX:7907761-7907881 1.0000 120 chr3L:312595-312715 1.0000 120 chr3L:2824855-2824975 1.0000 120 chr3R:6853171-6853291 1.0000 120 chr2L:3088363-3088483 1.0000 120 chr3R:18153844-18153964 1.0000 120 chr2L:9272217-9272337 1.0000 120 chr2R:10861842-10861962 1.0000 120 chr2R:24876495-24876615 1.0000 120 chrX:21338284-21338404 1.0000 120 chr3R:24635079-24635199 1.0000 120 chr3L:21194505-21194625 1.0000 120 chrX:5649508-5649628 1.0000 120 chr2R:14765567-14765687 1.0000 120 chrX:5363278-5363398 1.0000 120 chr2R:12121244-12121364 1.0000 120 chr3L:19584561-19584681 1.0000 120 chr2R:20986413-20986533 1.0000 120 chr2L:21632415-21632535 1.0000 120 chr2L:13285919-13286039 1.0000 120 chr3R:4419608-4419728 1.0000 120 chr3L:5662701-5662821 1.0000 120 chr3L:19087496-19087616 1.0000 120 chr2R:13805971-13806091 1.0000 120 chr2R:9506316-9506436 1.0000 120 chr2R:6073469-6073589 1.0000 120 chr3L:1577477-1577597 1.0000 120 chrX:4075526-4075646 1.0000 120 chr3L:19818819-19818939 1.0000 120 chr3R:24984257-24984377 1.0000 120 chrX:14602148-14602268 1.0000 120 chr2L:20315032-20315152 1.0000 120 chr3L:22911846-22911966 1.0000 120 chrX:2081974-2082094 1.0000 120 chr2R:13362960-13363080 1.0000 120 chr3R:29660295-29660415 1.0000 120 chrX:530874-530994 1.0000 120 chrX:8129311-8129431 1.0000 120 chr2R:10444129-10444249 1.0000 120 chr3R:12548346-12548466 1.0000 120 chr3R:31824307-31824427 1.0000 120 chr2L:20720118-20720238 1.0000 120 chr2R:16207702-16207822 1.0000 120 chr3R:6762274-6762394 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ewg/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ewg.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.233 C 0.262 G 0.265 T 0.24 Background letter frequencies (from file dataset with add-one prior applied): A 0.233 C 0.262 G 0.265 T 0.24 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCGCAKG MEME-1 width = 8 sites = 223 llr = 1587 E-value = 2.5e-170 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::811 pos.-specific C ::a:a111 probability G 1a:a::45 matrix T 7:::::42 bits 2.1 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.1 ***** (10.3 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel TGCGCAGG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16207702-16207822 55 3.61e-05 AAATTCGCAC TGCGCATG TTGCAAGCTG chrX:8129311-8129431 113 3.61e-05 TTATCGATAA TGCGCATG chrX:2081974-2082094 43 3.61e-05 GGGTGTTGAG TGCGCATG CTCCGAGCTC chrX:14602148-14602268 23 3.61e-05 TTTTTGCACA TGCGCATG CGCGTCACAC chr3R:4419608-4419728 77 3.61e-05 CCGGAGATCC TGCGCAGG TGCGAGTCGT chr2R:12121244-12121364 108 3.61e-05 GCCGCTGGAG TGCGCAGG CGCAA chrX:5363278-5363398 63 3.61e-05 AGTTTTCCAA TGCGCAGG ACCAAGCGAA chr2R:24876495-24876615 39 3.61e-05 AGCCCCACTG TGCGCATG CGCTGCTTTT chr2L:3088363-3088483 25 3.61e-05 TGCGACGAAC TGCGCATG TCCTGCCGCT chrX:7907761-7907881 72 3.61e-05 GGGCATGCTC TGCGCATG GCCAGCATCC chr2L:10053692-10053812 36 3.61e-05 TCCATTGGCG TGCGCATG TCGCCaagaa chr2L:80185-80305 75 3.61e-05 GCCATTTCAT TGCGCATG TCCATGTCTT chr2L:16691620-16691740 63 3.61e-05 GACTCCTCAG TGCGCATG TCCCCGGTGT chr3R:5413722-5413842 40 3.61e-05 CGCGAGAGCA TGCGCAGG GAGAGTTAAA chrX:22480729-22480849 66 3.61e-05 GGGTCAGCTG TGCGCATG GGCAGAGTAA chr2L:18321077-18321197 9 3.61e-05 GCTCCAAC TGCGCATG CTCAGAGTGT chr3R:17506997-17507117 32 3.61e-05 ACAAAATCCG TGCGCATG CGCGCTCTTT chr2R:9658244-9658364 93 3.61e-05 AAGAGATTGC TGCGCAGG CGCATCCTTA chr2L:21381518-21381638 52 3.61e-05 GTAACTTCTC TGCGCATG CTTGTGGATT chr3R:4291559-4291679 86 3.61e-05 CGCTGGAACC TGCGCAGG CGCTGGGTTG chr2L:14134279-14134399 74 3.61e-05 TCGTCCTTGC TGCGCAGG CGCTGCCACC chr2R:24810484-24810604 47 3.61e-05 TTTTTGGGCC TGCGCATG TGCAGCCAAG chr2R:951255-951375 44 3.61e-05 GATGACTGTA TGCGCATG ATTTCTAACA chr2R:16637250-16637370 113 3.61e-05 TATCGTTGAC TGCGCAGG chr3L:6843506-6843626 69 3.61e-05 GTTGTCCTTT TGCGCAGG CGCTTCCTTG chr2R:13106205-13106325 41 3.61e-05 ATTCAACCAG TGCGCATG TGCCCACACT chr2R:12266085-12266205 29 3.61e-05 GGAAATTCTG TGCGCATG TTGTCGAAAA chr2L:21075238-21075358 44 3.61e-05 CAACGTCCAC TGCGCAGG ACAGTATTGA chr3L:7601560-7601680 57 3.61e-05 TCATTGAGCA TGCGCAGG CGCCGATTGC chr3L:12748866-12748986 39 3.61e-05 AAATTCGCAG TGCGCATG CACGTTAAAA chrX:8187162-8187282 60 3.61e-05 TGCCTGCAAT TGCGCATG TGCTGGACCA chr2R:22109115-22109235 76 3.61e-05 CAGGTGAGAC TGCGCAGG CGCAGTGAGA chr2L:3718008-3718128 75 3.61e-05 AGAGTGACAC TGCGCATG CACTCGATTC chrX:10627526-10627646 74 3.61e-05 GGACTGCGCC TGCGCAGG GGTGCCTTTC chr4:305807-305927 49 3.61e-05 CTCGACTCTG TGCGCATG TCATTGAAAA chr3R:22031911-22032031 96 3.61e-05 TCACATGCAC TGCGCATG CGTACTCTTA chr2L:153298-153418 95 3.61e-05 TTACATTAAC TGCGCATG TCCGCTTTGT chr3R:5172115-5172235 81 3.61e-05 AGGTGCGTAG TGCGCAGG ACCGTCGAAT chr3R:21775864-21775984 47 3.61e-05 AGGCAGGAAG TGCGCATG TCCTTAAACC chr3L:8576576-8576696 12 3.61e-05 CCCGTCTATT TGCGCATG ATTCACCAAT chr3L:1627038-1627158 43 3.61e-05 ATCCGCTCCC TGCGCAGG CGCACTCTCT chr4:483815-483935 78 3.61e-05 TGGAGGGAAT TGCGCATG CTCACTGCAG chr2L:5109199-5109319 72 3.61e-05 GCCGGCGTCG TGCGCATG AGCAGAAATC chr2R:5668310-5668430 24 3.61e-05 CAAAAGTTAA TGCGCATG ACAAGCCTAT chrX:14266196-14266316 91 3.61e-05 CCCGCGAAAG TGCGCAGG CGTCGTCCAT chr2L:10310780-10310900 14 3.61e-05 ATACAAAGTA TGCGCAGG CCCACAGGCG chr3R:10224719-10224839 55 3.61e-05 CGGTTAGACT TGCGCAGG CGCTGACTTT chr2R:14201218-14201338 35 3.61e-05 GAACTGGCAG TGCGCAGG ATCCGGTCGT chr2R:8943108-8943228 30 3.61e-05 CAATCAAGTG TGCGCATG CGCAACTCTT chr3R:28047311-28047431 62 3.61e-05 ACATTCCACA TGCGCATG CCTGGGAGAA chr3R:15369881-15370001 69 3.61e-05 TAGATGCGCC TGCGCATG AAATTCGATT chr2L:5539194-5539314 46 3.61e-05 TCCTGGCCAT TGCGCATG TCCTGAAACG chr3L:993876-993996 65 3.61e-05 GAGTGCGCAC TGCGCATG TCAAGGATGT chr3L:22911846-22911966 12 6.87e-05 ACACAGGACA TGCGCAGT GGCCTTTTTG chr2L:20315032-20315152 60 6.87e-05 TCATGGGTCA TGCGCAGT TCGGAAAAAT chr3L:19818819-19818939 17 6.87e-05 CGCTTCGCTC TGCGCAGT TGTGGAAAgt chr2L:13285919-13286039 79 6.87e-05 ATACAGGACA TGCGCATT GGCATTTACT chr3L:21194505-21194625 12 6.87e-05 GACCACCCAC TGCGCATT CGCGGCACTC chr2R:10861842-10861962 21 6.87e-05 CCTCTCTCCC TGCGCAGT CGCACTTTGG chr2L:7358912-7359032 58 6.87e-05 ATCGCGGACA TGCGCAGT GGAAGCCAGG chr3L:12853576-12853696 46 6.87e-05 ATACGCCACA TGCGCAGT GGCGGGCGTG chr3L:21279278-21279398 28 6.87e-05 GTATGGTGCC TGCGCAGT AAATCCTGTG chr2L:21148361-21148481 20 6.87e-05 CATGTGTGCT TGCGCATT AACTTTAACA chr3R:29195055-29195175 63 6.87e-05 TCACAGGACC TGCGCATT TCCCGCCTGC chr3L:3123463-3123583 52 6.87e-05 ATCAGGAACA TGCGCAGT GCGATTCTGC chr2R:24739355-24739475 82 6.87e-05 GCAAGGATTT TGCGCAGT CCTTCCTCGC chr3L:5678330-5678450 75 6.87e-05 CTGCGGCGCA TGCGCATT GGCCGTGCTC chr2L:15200585-15200705 113 6.87e-05 CATCTGGGCA TGCGCAGT chr3L:20541314-20541434 66 6.87e-05 AACTTGCGTT TGCGCAGT GACCCGTCTC chr2L:20713801-20713921 53 6.87e-05 TTCCGGCGTT TGCGCAGT GGCCAAGTGA chr3R:20866315-20866435 25 6.87e-05 TTCCAACAGC TGCGCAGT GGATGCTGGG chr2L:18009785-18009905 65 6.87e-05 TCAGGTTTAT TGCGCAGT CGCGATTCGA chr2R:22870963-22871083 65 6.87e-05 CTTTAGCGCC TGCGCAGT GACCATCGCT chr3L:21625674-21625794 106 6.87e-05 ACTTCGTCTT TGCGCATT TACTGAT chr3R:10226407-10226527 31 6.87e-05 GGCGTGCCAC TGCGCAGT CTCCCCATTG chrX:1981862-1981982 24 6.87e-05 GCGCGGCACC TGCGCAGT GGCAAGTTGA chr2R:13129040-13129160 44 6.87e-05 GGGAAGGACA TGCGCAGT GGCTTCCGTG chrX:19961032-19961152 88 6.87e-05 AAACAGATCC TGCGCAGT GGACCACGTT chr3R:19508527-19508647 55 8.54e-05 AAATATTCAA TGCGCAAG CGCATTTCTG chr2L:21378144-21378264 66 8.54e-05 TTTCGCTTAC TGCGCAAG ACCACTGGAT chr2R:10444129-10444249 45 1.36e-04 GTTTTCGTCC TGCGCAGA CTCGTTATTG chrX:530874-530994 86 1.36e-04 GTTGGGAAAG TGCGCAGA AGCCCGACGG chr3R:29660295-29660415 77 1.36e-04 TAGTCCCTAC TGCGCAGA CTCCAATTTG chr2R:13362960-13363080 68 1.36e-04 CATCACTGCC TGCGCACG CACTGCCCGA chr3L:1629282-1629402 24 1.36e-04 ACTGAGGCTG TGCGCACG AGCTGCGTGG chr2R:10798710-10798830 75 1.36e-04 TCCTGCGCAC TGCGCACG ACGCGAGAAG chr3L:4086019-4086139 102 1.36e-04 ATGAAATATG TGCGCACG CCTGGTGAAT chr2L:16671082-16671202 43 1.36e-04 TGTGTGAGTC TGCGCAGA CTTAACCTAG chr3R:24514757-24514877 21 1.36e-04 AACAAATTGC TGCGCAGA CGCCGCTCTC chr3L:2653154-2653274 69 1.36e-04 GTGGCTTTTC TGCGCAGA CGCTTTGAAA chr3R:27662967-27663087 102 1.36e-04 GTGTTGGGCC TGCGCACG CAAACACCTG chr2L:6011276-6011396 81 1.36e-04 TCGCGGAGCA TGCGCAGA GTCTATGTTA chr2R:15727247-15727367 39 1.36e-04 CGGAAAAGCG TGCGCAGA CTCACCAAAA chr2L:5050998-5051118 69 1.36e-04 ACATCCGGCG TGCGCAGA AGCAGTACCA chr3R:24828397-24828517 69 1.36e-04 TCAATAGACC TGCGCACG CGCAGCAGCA chr3L:2824855-2824975 85 1.76e-04 CGCTCTCATC GGCGCATG CGTTGCATTT chr2R:24570562-24570682 57 1.76e-04 GCGGTGCCGG GGCGCAGG CGCGTGTGGT chr3R:7639513-7639633 100 1.76e-04 TTAGGGAGCG GGCGCATG GCATTTGCCT chrX:1692634-1692754 2 1.76e-04 C GGCGCATG CGTTACCAAT chr2R:24910481-24910601 43 1.76e-04 CCCACTCTCA GGCGCATG CTCACTCAAT chr2R:5804587-5804707 56 1.76e-04 AGCTGAGCCA GGCGCAGG CGCAGACGCT chr2L:13215137-13215257 91 1.76e-04 ACAGTATTTC GGCGCATG TCAAGTAGAT chr2R:10350052-10350172 45 1.76e-04 GAAAGGAAGT GGCGCAGG CTCGGAAAGC chr3R:25131189-25131309 92 1.76e-04 GGGATTTTGG GGCGCATG CGCCTCATAT chr3R:31621973-31622093 42 1.76e-04 gcgggagagC GGCGCAGG CGCAGATCCC chr3R:9739965-9740085 50 1.76e-04 TCCTCCGGCG GGCGCAGG CGCTTCGCAG chr3L:19542985-19543105 61 1.76e-04 AGTTCACCAG GGCGCATG CTCAAAAGGG chr2R:16071130-16071250 21 1.76e-04 CCGCACACAG GGCGCATG CGCGATTTTA chr2L:5314899-5315019 79 1.76e-04 GCCTGGCGCC GGCGCAGG GAGAGCACAC chr2L:19586489-19586609 51 1.76e-04 ATCCGTGGAT GGCGCATG TGCTCTGGGT chr3R:5376701-5376821 24 1.76e-04 TTTCGAGTAC GGCGCATG CGTCCTTTCA chr3L:5920963-5921083 9 1.76e-04 CTCAACAG GGCGCATG CGCGTTGAAA chr2R:24116677-24116797 24 1.76e-04 GCAGAGCGCC GGCGCAGG ACTTTCGCAA chr3R:28520512-28520632 35 1.76e-04 CAGAGTTTAG GGCGCAGG CTCCACGAAC chr2L:20720118-20720238 3 2.52e-04 CA TGCGCAGC GTAGCAGAGC chr3R:31824307-31824427 69 2.52e-04 CCCCACTGTT TGCGCATC TTATCCGCGC chr3L:19087496-19087616 70 2.52e-04 AACTTCCTGC TGCGCCTG CGTTGCACTA chr3L:5662701-5662821 73 2.52e-04 CAGCGGAAGC TGCGCAGC AACCACACCC chrX:12568603-12568723 43 2.52e-04 GCAGGACGAT TGCGCAGC AAAGCGACAT chrX:10621490-10621610 45 2.52e-04 GCGCTCTTCT TGCGCCTG CTCCGCTCTC chrX:282005-282125 49 2.52e-04 TGGACCCGAG TGCGCCTG CGTCTGTTTT chrX:8694210-8694330 74 2.52e-04 TTGGCCACGC TGCGCAGC CTCCGATTGT chr2L:1048982-1049102 55 2.52e-04 CACCACCCAC TGCGCCTG TCCGTTGCCT chr2R:24524577-24524697 76 2.52e-04 TACATGGGCA TGCGCAGC AATGGCGCAA chr2R:16764386-16764506 27 2.52e-04 GCCATTCCAA TGCGCAGC TGTGAGAATT chrX:6081394-6081514 67 2.52e-04 AGTCGACGCC TGCGCAGC TCCCGCAGCA chr3L:152738-152858 26 2.52e-04 GAGCTCCCCC TGCGCCTG CTCGTTAGAT chr3R:21821794-21821914 61 2.52e-04 GGATGTAAAG TGCGCCGG CGCCGTGGGA chr2L:2400128-2400248 26 2.52e-04 TTCTCGAGCC TGCGCAGC TGTCGCCTGC chr3L:20104767-20104887 112 2.52e-04 GTCAGCTCAC TGCGCAGC T chr2L:1082844-1082964 48 2.52e-04 GCGGAGCGCC TGCGCCTG CGCCGCACCA chr3R:7265913-7266033 111 2.52e-04 TGCTTGCTCG TGCGCCTG CG chr3L:267555-267675 27 2.52e-04 GTTTAGAACT TGCGCAGC TCATTGATAA chr2L:3090383-3090503 38 2.52e-04 TTGTGGAGCA TGCGCCTG GGGCTGTCAG chr2R:9247207-9247327 84 2.52e-04 CGTTGGATTC TGCGCAGC TTCGGCTCTG chrX:11930875-11930995 58 2.52e-04 CACTTCGCAG TGCGCCTG CGCCCGGATC chrX:932996-933116 84 2.52e-04 AAATCGCGCC TGCGCCGG AAAACAACAA chrX:15385583-15385703 40 2.52e-04 TTGAGGGCTC TGCGCCGG CGCCGATCTC chr2L:9272217-9272337 8 2.67e-04 CATGCTC TGCGCAAT CGCCACTCGA chr2L:2212566-2212686 49 2.67e-04 TGGCAGGGCA TGCGCAAT GGAGGCCACA chr2L:1346165-1346285 34 2.67e-04 GAGTTGAGTT TGCGCAAT GGAGAAATGA chr3R:4083886-4084006 61 2.67e-04 ACGTTGAAGC TGCGCAAT GACGCTCGGC chrX:2259903-2260023 69 2.67e-04 ATCCCAGGCA TGCGCAAT CGATACTCGT chr2R:24607598-24607718 49 2.67e-04 CTTTGGGCAG TGCGCAAT CGCCAGCGCC chr2R:9506316-9506436 90 2.84e-04 GGCACGCATT TGCGCACT AGCCTCCCAG chr3L:12328962-12329082 16 2.84e-04 ACTTGAGACA TGCGCACT GCCGGGGCAG chr3L:9774118-9774238 90 2.84e-04 GGCCAACGCC TGCGCACT GGGCCAGAAA chr2L:19516180-19516300 70 2.84e-04 TTTTGGAGCC TGCGCACT GGACGCCAGC chr2L:2815809-2815929 13 2.84e-04 TTTATGGTCC TGCGCACT TATTGGCAAA chr2R:10729251-10729371 49 2.84e-04 GCGCCGGTCA TGCGCACT TCGCACTTCC chr2R:11846154-11846274 104 2.84e-04 CTGGTGAGCA TGCGCACT GGACCAGAG chr2R:14765567-14765687 62 3.19e-04 TTCCAACCAC AGCGCATG CGTGGGAAAG chrX:5649508-5649628 64 3.19e-04 GTCCAGGAGC AGCGCATG CGTCGAGGTC chr3R:24635079-24635199 50 3.19e-04 CATTTACGGC AGCGCATG CTTGTTGTGT chrX:10906606-10906726 60 3.19e-04 GCAGAGCGTG AGCGCAGG CGCATACCTG chrX:18860184-18860304 21 3.19e-04 CAGCTGGAAC AGCGCATG CGTTGTGCCC chr3R:17902351-17902471 43 3.19e-04 ACGAAAGTTC AGCGCATG CGCTCCAATC chr3L:7189940-7190060 67 3.19e-04 GGCTGCTCTC AGCGCATG CGCACCACCA chrX:2383588-2383708 43 3.19e-04 AACATGTAGC AGCGCAGG TCAGCCCGGG chrX:11983978-11984098 94 3.19e-04 TGCGGAGGAG AGCGCATG CGTGTCCTCC chr3R:24984257-24984377 32 3.55e-04 GACACGCGCC GGCGCAGT GGCGGAAATC chr3R:18269955-18270075 81 3.55e-04 AGGCGGCAGC GGCGCATT CCTCCCTCGA chr2L:10435607-10435727 54 3.55e-04 ACTCAGCGCA GGCGCAGT TAACAGTCGA chr3L:9643945-9644065 70 3.55e-04 AATCCGCGCC GGCGCAGT GGTCGAGCTA chr2L:21632415-21632535 65 4.06e-04 TTCGATCGCA TGCGCAAA AACGAGCTTT chr2R:20986413-20986533 33 4.06e-04 TCTTCGGCTA TGCGCAAA TACCGATTTC chrX:12389296-12389416 108 4.06e-04 TATCTTCCAT TGCGCAAA ATCCG chr2R:24031170-24031290 76 4.06e-04 TATTCGTGCA TGCGCAAA GGAGCTGGAC chr2L:14408532-14408652 70 4.06e-04 AAGCGGCGCC TGCGCCTT GCTTGAAATA chr3R:5387986-5388106 68 4.23e-04 TGGAGGATTC TGCGCACA AGGATTCCAG chr2R:5749484-5749604 61 4.23e-04 CTTGCGTTTG TGCGCACA GGCGCACTGG chr3R:7394178-7394298 107 4.23e-04 GAGAGAAACA TGCGCACA GACGCG chr2L:13355077-13355197 71 4.23e-04 GCGAAGGACA TGCGCACA GGACATTGAA chr3R:6762274-6762394 29 4.62e-04 TTTGCCTTTT CGCGCATG CGCCCCTGCT chr4:253314-253434 66 4.62e-04 TGAAAATATT CGCGCATG CCCATTGTCA chr3L:19237923-19238043 72 4.62e-04 AAACGTGTAG CGCGCATG ATCCTCTCAC chr2L:10373974-10374094 45 4.62e-04 CGACTTTTCG CGCGCATG TGCGAAATTC chr3L:19994204-19994324 94 4.62e-04 AGACAATTTC CGCGCATG CGCCTCAACC chr3L:1661882-1662002 16 4.81e-04 TCTGTTGGCA GGCGCAAG CGCAGTCCGG chr2R:13805971-13806091 46 5.71e-04 ACAAGTGCAG GGCGCAGA TGCGCCAAAT chr3L:312595-312715 101 5.71e-04 GCGTTTTGCC GGCGCACG CACTTAACAA chr3L:17148074-17148194 39 5.71e-04 TTTCCTTGCC GGCGCAGA AGCATTACAA chr2R:15115138-15115258 47 5.71e-04 GAAGCAGGGC GGCGCAGA CAGGAAGCTT chr3R:11542958-11543078 75 5.71e-04 CTCCCACGCA GGCGCACG ACAAAAAGGA chr3R:11563283-11563403 73 5.71e-04 CGTGTGCGCT TGCGCCAG CCCCCAAATG chr2R:6040281-6040401 107 5.71e-04 TCTTCCTCTC GGCGCACG CGCTCT chrX:4075526-4075646 52 6.78e-04 CGAGCTCCAG TGCGCCGA CTCGTCAGAC chrX:5637643-5637763 5 6.78e-04 AATC TGCGCCGA Atctctcgca chr3L:4188059-4188179 44 6.78e-04 GCCGGGCGCC TGCGCCGA CTGGCTTTAC chr2L:15435046-15435166 58 6.78e-04 GGCGCGCACA TGCGCACC CATTTGTCCT chr3R:25032825-25032945 72 6.78e-04 TTGCGACCCC TGCGCCGA GCActgttac chr3L:19601531-19601651 101 6.78e-04 TGATTTCTCC AGCGCATT GCTGGGTGAA chr2R:18690706-18690826 54 7.16e-04 CCTCTCGCTC TGCGCTGG AAGTGTGTGT chr3R:28146449-28146569 56 8.00e-04 ACTTGTGAAT GGCGCCTG GAGCGAGGAA chr3R:12451989-12452109 66 8.00e-04 CGGGGGGAGC GGCGCAGC GCCTGCGCCC chr3R:16427693-16427813 88 8.92e-04 TTCGCATGCG CGCGCATT TAAATTCACT chr2R:16765973-16766093 81 8.92e-04 GCAGGACGCA TGCGCCGC AATCGGGGTA chr3R:25969058-25969178 109 9.93e-04 AGGTTGAGTT TGCGCCAT TTGG chr3R:29969725-29969845 74 1.01e-03 TTTCTACGCC TGCGCCCT ATCTTTTCCT chr3R:5523367-5523487 54 1.06e-03 GAGCCACGCC TGCGCTGT GACATGTAAA chr3L:22273855-22273975 76 1.06e-03 AGCCGGCACA TGCGCTTT GCCCGCTCCC chr2L:5956292-5956412 45 1.06e-03 ACTGCGGTCA TGCGCTGT GGATTTGTAC chrX:21338284-21338404 65 1.23e-03 GTCACGCGGC TGCGCGTG CGTTTGTATA chrX:13669626-13669746 12 1.23e-03 CTTAGTTCAT TGCGCGGG GTGGCAATCC chrX:2636424-2636544 97 1.23e-03 GTCCTTCGCC TGCGCGTG ACATTCCGAT chr2L:18887026-18887146 107 1.23e-03 TGTTTGTGCG CGCGCATA CATTTG chr3L:17149993-17150113 87 1.29e-03 TTCCGCTCTC GGCGCAAA CTCGGTGAAA chr2R:14755817-14755937 52 1.34e-03 TTAAAAGGCA TGCGCCAA GGGGGAGTTA chr2R:11442381-11442501 87 1.34e-03 AAAAGCGCCA TGCGCCAA AACTGTCAAA chrX:16844528-16844648 59 1.34e-03 GTCCTGCGGC TGCGCCAA TACCGTTGTT chr3L:8241068-8241188 47 1.34e-03 CCTGCGGGAC AGCGCAAT CAGGACTCAG chrX:2061964-2062084 79 1.34e-03 GCATCGAGCA TGCGCCAA CTTTTTCGCG chrX:17611592-17611712 57 1.53e-03 GAAACTTATC CGCGCAGC CGCAGTCCTC chr2R:18718074-18718194 25 1.53e-03 ACGCAAGAGT TGCGCTCG GATCCTTTAG chr2L:11086512-11086632 82 1.53e-03 GACACGAGCA CGCGCCTG CGCGCAAAGC chr3R:18949243-18949363 41 1.53e-03 TGGAAAAGCT CGCGCCTG CGCTGCCAGG chr3R:18153844-18153964 30 1.68e-03 CCACCACGCA TGCGCCAC GCATGTGGCA chr2L:4852744-4852864 78 1.85e-03 CAACTTAACG CGCGCACT CGCATCGGCG chrX:1508380-1508500 89 1.90e-03 ATTTTGCGTC TGCGCTGC TTTTTGGGGA chrX:12922492-12922612 45 1.90e-03 ATATGACGCA TGCGCTGC GTTTTTCCCG chr3L:19584561-19584681 29 2.09e-03 TAAATGCAAA AGCGCCAG CGCCTCCGAC chr3R:10640954-10641074 73 2.09e-03 TTTGACTCAC AGCGCCAG CGCCACAATT chrX:14599554-14599674 83 2.63e-03 GCGATTCCTG AGCGCCGC TTCAGCGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16207702-16207822 3.6e-05 54_[+1]_58 chrX:8129311-8129431 3.6e-05 112_[+1] chrX:2081974-2082094 3.6e-05 42_[+1]_70 chrX:14602148-14602268 3.6e-05 22_[+1]_90 chr3R:4419608-4419728 3.6e-05 76_[+1]_36 chr2R:12121244-12121364 3.6e-05 107_[+1]_5 chrX:5363278-5363398 3.6e-05 62_[+1]_50 chr2R:24876495-24876615 3.6e-05 38_[+1]_74 chr2L:3088363-3088483 3.6e-05 24_[+1]_88 chrX:7907761-7907881 3.6e-05 71_[+1]_41 chr2L:10053692-10053812 3.6e-05 35_[+1]_77 chr2L:80185-80305 3.6e-05 74_[+1]_38 chr2L:16691620-16691740 3.6e-05 62_[+1]_50 chr3R:5413722-5413842 3.6e-05 39_[+1]_73 chrX:22480729-22480849 3.6e-05 65_[+1]_47 chr2L:18321077-18321197 3.6e-05 8_[+1]_104 chr3R:17506997-17507117 3.6e-05 31_[+1]_81 chr2R:9658244-9658364 3.6e-05 92_[+1]_20 chr2L:21381518-21381638 3.6e-05 51_[+1]_61 chr3R:4291559-4291679 3.6e-05 85_[+1]_27 chr2L:14134279-14134399 3.6e-05 73_[+1]_39 chr2R:24810484-24810604 3.6e-05 46_[+1]_66 chr2R:951255-951375 3.6e-05 43_[+1]_69 chr2R:16637250-16637370 3.6e-05 112_[+1] chr3L:6843506-6843626 3.6e-05 68_[+1]_44 chr2R:13106205-13106325 3.6e-05 40_[+1]_72 chr2R:12266085-12266205 3.6e-05 28_[+1]_84 chr2L:21075238-21075358 3.6e-05 43_[+1]_69 chr3L:7601560-7601680 3.6e-05 56_[+1]_56 chr3L:12748866-12748986 3.6e-05 38_[+1]_74 chrX:8187162-8187282 3.6e-05 59_[+1]_53 chr2R:22109115-22109235 3.6e-05 75_[+1]_37 chr2L:3718008-3718128 3.6e-05 74_[+1]_38 chrX:10627526-10627646 3.6e-05 73_[+1]_39 chr4:305807-305927 3.6e-05 48_[+1]_64 chr3R:22031911-22032031 3.6e-05 95_[+1]_17 chr2L:153298-153418 3.6e-05 94_[+1]_18 chr3R:5172115-5172235 3.6e-05 80_[+1]_32 chr3R:21775864-21775984 3.6e-05 46_[+1]_66 chr3L:8576576-8576696 3.6e-05 11_[+1]_101 chr3L:1627038-1627158 3.6e-05 42_[+1]_70 chr4:483815-483935 3.6e-05 77_[+1]_35 chr2L:5109199-5109319 3.6e-05 71_[+1]_41 chr2R:5668310-5668430 3.6e-05 23_[+1]_89 chrX:14266196-14266316 3.6e-05 90_[+1]_22 chr2L:10310780-10310900 3.6e-05 13_[+1]_99 chr3R:10224719-10224839 3.6e-05 54_[+1]_58 chr2R:14201218-14201338 3.6e-05 34_[+1]_78 chr2R:8943108-8943228 3.6e-05 29_[+1]_83 chr3R:28047311-28047431 3.6e-05 61_[+1]_51 chr3R:15369881-15370001 3.6e-05 68_[+1]_44 chr2L:5539194-5539314 3.6e-05 45_[+1]_67 chr3L:993876-993996 3.6e-05 64_[+1]_48 chr3L:22911846-22911966 6.9e-05 11_[+1]_101 chr2L:20315032-20315152 6.9e-05 59_[+1]_53 chr3L:19818819-19818939 6.9e-05 16_[+1]_96 chr2L:13285919-13286039 6.9e-05 78_[+1]_34 chr3L:21194505-21194625 6.9e-05 11_[+1]_101 chr2R:10861842-10861962 6.9e-05 20_[+1]_92 chr2L:7358912-7359032 6.9e-05 57_[+1]_55 chr3L:12853576-12853696 6.9e-05 45_[+1]_67 chr3L:21279278-21279398 6.9e-05 27_[+1]_85 chr2L:21148361-21148481 6.9e-05 19_[+1]_93 chr3R:29195055-29195175 6.9e-05 62_[+1]_50 chr3L:3123463-3123583 6.9e-05 51_[+1]_61 chr2R:24739355-24739475 6.9e-05 81_[+1]_31 chr3L:5678330-5678450 6.9e-05 74_[+1]_38 chr2L:15200585-15200705 6.9e-05 112_[+1] chr3L:20541314-20541434 6.9e-05 65_[+1]_47 chr2L:20713801-20713921 6.9e-05 52_[+1]_60 chr3R:20866315-20866435 6.9e-05 24_[+1]_88 chr2L:18009785-18009905 6.9e-05 64_[+1]_48 chr2R:22870963-22871083 6.9e-05 64_[+1]_48 chr3L:21625674-21625794 6.9e-05 105_[+1]_7 chr3R:10226407-10226527 6.9e-05 30_[+1]_82 chrX:1981862-1981982 6.9e-05 23_[+1]_89 chr2R:13129040-13129160 6.9e-05 43_[+1]_69 chrX:19961032-19961152 6.9e-05 87_[+1]_25 chr3R:19508527-19508647 8.5e-05 54_[+1]_58 chr2L:21378144-21378264 8.5e-05 65_[+1]_47 chr2R:10444129-10444249 0.00014 44_[+1]_68 chrX:530874-530994 0.00014 85_[+1]_27 chr3R:29660295-29660415 0.00014 76_[+1]_36 chr2R:13362960-13363080 0.00014 67_[+1]_45 chr3L:1629282-1629402 0.00014 23_[+1]_89 chr2R:10798710-10798830 0.00014 74_[+1]_38 chr3L:4086019-4086139 0.00014 101_[+1]_11 chr2L:16671082-16671202 0.00014 42_[+1]_70 chr3R:24514757-24514877 0.00014 20_[+1]_92 chr3L:2653154-2653274 0.00014 68_[+1]_44 chr3R:27662967-27663087 0.00014 101_[+1]_11 chr2L:6011276-6011396 0.00014 80_[+1]_32 chr2R:15727247-15727367 0.00014 38_[+1]_74 chr2L:5050998-5051118 0.00014 68_[+1]_44 chr3R:24828397-24828517 0.00014 68_[+1]_44 chr3L:2824855-2824975 0.00018 84_[+1]_28 chr2R:24570562-24570682 0.00018 56_[+1]_56 chr3R:7639513-7639633 0.00018 99_[+1]_13 chrX:1692634-1692754 0.00018 1_[+1]_111 chr2R:24910481-24910601 0.00018 42_[+1]_70 chr2R:5804587-5804707 0.00018 55_[+1]_57 chr2L:13215137-13215257 0.00018 90_[+1]_22 chr2R:10350052-10350172 0.00018 44_[+1]_68 chr3R:25131189-25131309 0.00018 91_[+1]_21 chr3R:31621973-31622093 0.00018 41_[+1]_71 chr3R:9739965-9740085 0.00018 49_[+1]_63 chr3L:19542985-19543105 0.00018 60_[+1]_52 chr2R:16071130-16071250 0.00018 20_[+1]_92 chr2L:5314899-5315019 0.00018 78_[+1]_34 chr2L:19586489-19586609 0.00018 50_[+1]_62 chr3R:5376701-5376821 0.00018 23_[+1]_89 chr3L:5920963-5921083 0.00018 8_[+1]_104 chr2R:24116677-24116797 0.00018 23_[+1]_89 chr3R:28520512-28520632 0.00018 34_[+1]_78 chr2L:20720118-20720238 0.00025 2_[+1]_110 chr3R:31824307-31824427 0.00025 68_[+1]_44 chr3L:19087496-19087616 0.00025 69_[+1]_43 chr3L:5662701-5662821 0.00025 72_[+1]_40 chrX:12568603-12568723 0.00025 42_[+1]_70 chrX:10621490-10621610 0.00025 44_[+1]_68 chrX:282005-282125 0.00025 48_[+1]_64 chrX:8694210-8694330 0.00025 73_[+1]_39 chr2L:1048982-1049102 0.00025 54_[+1]_58 chr2R:24524577-24524697 0.00025 75_[+1]_37 chr2R:16764386-16764506 0.00025 26_[+1]_86 chrX:6081394-6081514 0.00025 66_[+1]_46 chr3L:152738-152858 0.00025 25_[+1]_87 chr3R:21821794-21821914 0.00025 60_[+1]_52 chr2L:2400128-2400248 0.00025 25_[+1]_87 chr3L:20104767-20104887 0.00025 111_[+1]_1 chr2L:1082844-1082964 0.00025 47_[+1]_65 chr3R:7265913-7266033 0.00025 110_[+1]_2 chr3L:267555-267675 0.00025 26_[+1]_86 chr2L:3090383-3090503 0.00025 37_[+1]_75 chr2R:9247207-9247327 0.00025 83_[+1]_29 chrX:11930875-11930995 0.00025 57_[+1]_55 chrX:932996-933116 0.00025 83_[+1]_29 chrX:15385583-15385703 0.00025 39_[+1]_73 chr2L:9272217-9272337 0.00027 7_[+1]_105 chr2L:2212566-2212686 0.00027 48_[+1]_64 chr2L:1346165-1346285 0.00027 33_[+1]_79 chr3R:4083886-4084006 0.00027 60_[+1]_52 chrX:2259903-2260023 0.00027 68_[+1]_44 chr2R:24607598-24607718 0.00027 48_[+1]_64 chr2R:9506316-9506436 0.00028 89_[+1]_23 chr3L:12328962-12329082 0.00028 15_[+1]_97 chr3L:9774118-9774238 0.00028 89_[+1]_23 chr2L:19516180-19516300 0.00028 69_[+1]_43 chr2L:2815809-2815929 0.00028 12_[+1]_100 chr2R:10729251-10729371 0.00028 48_[+1]_64 chr2R:11846154-11846274 0.00028 103_[+1]_9 chr2R:14765567-14765687 0.00032 61_[+1]_51 chrX:5649508-5649628 0.00032 63_[+1]_49 chr3R:24635079-24635199 0.00032 49_[+1]_63 chrX:10906606-10906726 0.00032 59_[+1]_53 chrX:18860184-18860304 0.00032 20_[+1]_92 chr3R:17902351-17902471 0.00032 42_[+1]_70 chr3L:7189940-7190060 0.00032 66_[+1]_46 chrX:2383588-2383708 0.00032 42_[+1]_70 chrX:11983978-11984098 0.00032 93_[+1]_19 chr3R:24984257-24984377 0.00036 31_[+1]_81 chr3R:18269955-18270075 0.00036 80_[+1]_32 chr2L:10435607-10435727 0.00036 53_[+1]_59 chr3L:9643945-9644065 0.00036 69_[+1]_43 chr2L:21632415-21632535 0.00041 64_[+1]_48 chr2R:20986413-20986533 0.00041 32_[+1]_80 chrX:12389296-12389416 0.00041 107_[+1]_5 chr2R:24031170-24031290 0.00041 75_[+1]_37 chr2L:14408532-14408652 0.00041 69_[+1]_43 chr3R:5387986-5388106 0.00042 67_[+1]_45 chr2R:5749484-5749604 0.00042 60_[+1]_52 chr3R:7394178-7394298 0.00042 106_[+1]_6 chr2L:13355077-13355197 0.00042 70_[+1]_42 chr3R:6762274-6762394 0.00046 28_[+1]_84 chr4:253314-253434 0.00046 65_[+1]_47 chr3L:19237923-19238043 0.00046 71_[+1]_41 chr2L:10373974-10374094 0.00046 44_[+1]_68 chr3L:19994204-19994324 0.00046 93_[+1]_19 chr3L:1661882-1662002 0.00048 15_[+1]_97 chr2R:13805971-13806091 0.00057 45_[+1]_67 chr3L:312595-312715 0.00057 100_[+1]_12 chr3L:17148074-17148194 0.00057 38_[+1]_74 chr2R:15115138-15115258 0.00057 46_[+1]_66 chr3R:11542958-11543078 0.00057 74_[+1]_38 chr3R:11563283-11563403 0.00057 72_[+1]_40 chr2R:6040281-6040401 0.00057 106_[+1]_6 chrX:4075526-4075646 0.00068 51_[+1]_61 chrX:5637643-5637763 0.00068 4_[+1]_108 chr3L:4188059-4188179 0.00068 43_[+1]_69 chr2L:15435046-15435166 0.00068 57_[+1]_55 chr3R:25032825-25032945 0.00068 71_[+1]_41 chr3L:19601531-19601651 0.00068 100_[+1]_12 chr2R:18690706-18690826 0.00072 53_[+1]_59 chr3R:28146449-28146569 0.0008 55_[+1]_57 chr3R:12451989-12452109 0.0008 65_[+1]_47 chr3R:16427693-16427813 0.00089 87_[+1]_25 chr2R:16765973-16766093 0.00089 80_[+1]_32 chr3R:25969058-25969178 0.00099 108_[+1]_4 chr3R:29969725-29969845 0.001 73_[+1]_39 chr3R:5523367-5523487 0.0011 53_[+1]_59 chr3L:22273855-22273975 0.0011 75_[+1]_37 chr2L:5956292-5956412 0.0011 44_[+1]_68 chrX:21338284-21338404 0.0012 64_[+1]_48 chrX:13669626-13669746 0.0012 11_[+1]_101 chrX:2636424-2636544 0.0012 96_[+1]_16 chr2L:18887026-18887146 0.0012 106_[+1]_6 chr3L:17149993-17150113 0.0013 86_[+1]_26 chr2R:14755817-14755937 0.0013 51_[+1]_61 chr2R:11442381-11442501 0.0013 86_[+1]_26 chrX:16844528-16844648 0.0013 58_[+1]_54 chr3L:8241068-8241188 0.0013 46_[+1]_66 chrX:2061964-2062084 0.0013 78_[+1]_34 chrX:17611592-17611712 0.0015 56_[+1]_56 chr2R:18718074-18718194 0.0015 24_[+1]_88 chr2L:11086512-11086632 0.0015 81_[+1]_31 chr3R:18949243-18949363 0.0015 40_[+1]_72 chr3R:18153844-18153964 0.0017 29_[+1]_83 chr2L:4852744-4852864 0.0019 77_[+1]_35 chrX:1508380-1508500 0.0019 88_[+1]_24 chrX:12922492-12922612 0.0019 44_[+1]_68 chr3L:19584561-19584681 0.0021 28_[+1]_84 chr3R:10640954-10641074 0.0021 72_[+1]_40 chrX:14599554-14599674 0.0026 82_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCAKG width=8 seqs=223 chr2R:16207702-16207822 ( 55) TGCGCATG 1 chrX:8129311-8129431 ( 113) TGCGCATG 1 chrX:2081974-2082094 ( 43) TGCGCATG 1 chrX:14602148-14602268 ( 23) TGCGCATG 1 chr3R:4419608-4419728 ( 77) TGCGCAGG 1 chr2R:12121244-12121364 ( 108) TGCGCAGG 1 chrX:5363278-5363398 ( 63) TGCGCAGG 1 chr2R:24876495-24876615 ( 39) TGCGCATG 1 chr2L:3088363-3088483 ( 25) TGCGCATG 1 chrX:7907761-7907881 ( 72) TGCGCATG 1 chr2L:10053692-10053812 ( 36) TGCGCATG 1 chr2L:80185-80305 ( 75) TGCGCATG 1 chr2L:16691620-16691740 ( 63) TGCGCATG 1 chr3R:5413722-5413842 ( 40) TGCGCAGG 1 chrX:22480729-22480849 ( 66) TGCGCATG 1 chr2L:18321077-18321197 ( 9) TGCGCATG 1 chr3R:17506997-17507117 ( 32) TGCGCATG 1 chr2R:9658244-9658364 ( 93) TGCGCAGG 1 chr2L:21381518-21381638 ( 52) TGCGCATG 1 chr3R:4291559-4291679 ( 86) TGCGCAGG 1 chr2L:14134279-14134399 ( 74) TGCGCAGG 1 chr2R:24810484-24810604 ( 47) TGCGCATG 1 chr2R:951255-951375 ( 44) TGCGCATG 1 chr2R:16637250-16637370 ( 113) TGCGCAGG 1 chr3L:6843506-6843626 ( 69) TGCGCAGG 1 chr2R:13106205-13106325 ( 41) TGCGCATG 1 chr2R:12266085-12266205 ( 29) TGCGCATG 1 chr2L:21075238-21075358 ( 44) TGCGCAGG 1 chr3L:7601560-7601680 ( 57) TGCGCAGG 1 chr3L:12748866-12748986 ( 39) TGCGCATG 1 chrX:8187162-8187282 ( 60) TGCGCATG 1 chr2R:22109115-22109235 ( 76) TGCGCAGG 1 chr2L:3718008-3718128 ( 75) TGCGCATG 1 chrX:10627526-10627646 ( 74) TGCGCAGG 1 chr4:305807-305927 ( 49) TGCGCATG 1 chr3R:22031911-22032031 ( 96) TGCGCATG 1 chr2L:153298-153418 ( 95) TGCGCATG 1 chr3R:5172115-5172235 ( 81) TGCGCAGG 1 chr3R:21775864-21775984 ( 47) TGCGCATG 1 chr3L:8576576-8576696 ( 12) TGCGCATG 1 chr3L:1627038-1627158 ( 43) TGCGCAGG 1 chr4:483815-483935 ( 78) TGCGCATG 1 chr2L:5109199-5109319 ( 72) TGCGCATG 1 chr2R:5668310-5668430 ( 24) TGCGCATG 1 chrX:14266196-14266316 ( 91) TGCGCAGG 1 chr2L:10310780-10310900 ( 14) TGCGCAGG 1 chr3R:10224719-10224839 ( 55) TGCGCAGG 1 chr2R:14201218-14201338 ( 35) TGCGCAGG 1 chr2R:8943108-8943228 ( 30) TGCGCATG 1 chr3R:28047311-28047431 ( 62) TGCGCATG 1 chr3R:15369881-15370001 ( 69) TGCGCATG 1 chr2L:5539194-5539314 ( 46) TGCGCATG 1 chr3L:993876-993996 ( 65) TGCGCATG 1 chr3L:22911846-22911966 ( 12) TGCGCAGT 1 chr2L:20315032-20315152 ( 60) TGCGCAGT 1 chr3L:19818819-19818939 ( 17) TGCGCAGT 1 chr2L:13285919-13286039 ( 79) TGCGCATT 1 chr3L:21194505-21194625 ( 12) TGCGCATT 1 chr2R:10861842-10861962 ( 21) TGCGCAGT 1 chr2L:7358912-7359032 ( 58) TGCGCAGT 1 chr3L:12853576-12853696 ( 46) TGCGCAGT 1 chr3L:21279278-21279398 ( 28) TGCGCAGT 1 chr2L:21148361-21148481 ( 20) TGCGCATT 1 chr3R:29195055-29195175 ( 63) TGCGCATT 1 chr3L:3123463-3123583 ( 52) TGCGCAGT 1 chr2R:24739355-24739475 ( 82) TGCGCAGT 1 chr3L:5678330-5678450 ( 75) TGCGCATT 1 chr2L:15200585-15200705 ( 113) TGCGCAGT 1 chr3L:20541314-20541434 ( 66) TGCGCAGT 1 chr2L:20713801-20713921 ( 53) TGCGCAGT 1 chr3R:20866315-20866435 ( 25) TGCGCAGT 1 chr2L:18009785-18009905 ( 65) TGCGCAGT 1 chr2R:22870963-22871083 ( 65) TGCGCAGT 1 chr3L:21625674-21625794 ( 106) TGCGCATT 1 chr3R:10226407-10226527 ( 31) TGCGCAGT 1 chrX:1981862-1981982 ( 24) TGCGCAGT 1 chr2R:13129040-13129160 ( 44) TGCGCAGT 1 chrX:19961032-19961152 ( 88) TGCGCAGT 1 chr3R:19508527-19508647 ( 55) TGCGCAAG 1 chr2L:21378144-21378264 ( 66) TGCGCAAG 1 chr2R:10444129-10444249 ( 45) TGCGCAGA 1 chrX:530874-530994 ( 86) TGCGCAGA 1 chr3R:29660295-29660415 ( 77) TGCGCAGA 1 chr2R:13362960-13363080 ( 68) TGCGCACG 1 chr3L:1629282-1629402 ( 24) TGCGCACG 1 chr2R:10798710-10798830 ( 75) TGCGCACG 1 chr3L:4086019-4086139 ( 102) TGCGCACG 1 chr2L:16671082-16671202 ( 43) TGCGCAGA 1 chr3R:24514757-24514877 ( 21) TGCGCAGA 1 chr3L:2653154-2653274 ( 69) TGCGCAGA 1 chr3R:27662967-27663087 ( 102) TGCGCACG 1 chr2L:6011276-6011396 ( 81) TGCGCAGA 1 chr2R:15727247-15727367 ( 39) TGCGCAGA 1 chr2L:5050998-5051118 ( 69) TGCGCAGA 1 chr3R:24828397-24828517 ( 69) TGCGCACG 1 chr3L:2824855-2824975 ( 85) GGCGCATG 1 chr2R:24570562-24570682 ( 57) GGCGCAGG 1 chr3R:7639513-7639633 ( 100) GGCGCATG 1 chrX:1692634-1692754 ( 2) GGCGCATG 1 chr2R:24910481-24910601 ( 43) GGCGCATG 1 chr2R:5804587-5804707 ( 56) GGCGCAGG 1 chr2L:13215137-13215257 ( 91) GGCGCATG 1 chr2R:10350052-10350172 ( 45) GGCGCAGG 1 chr3R:25131189-25131309 ( 92) GGCGCATG 1 chr3R:31621973-31622093 ( 42) GGCGCAGG 1 chr3R:9739965-9740085 ( 50) GGCGCAGG 1 chr3L:19542985-19543105 ( 61) GGCGCATG 1 chr2R:16071130-16071250 ( 21) GGCGCATG 1 chr2L:5314899-5315019 ( 79) GGCGCAGG 1 chr2L:19586489-19586609 ( 51) GGCGCATG 1 chr3R:5376701-5376821 ( 24) GGCGCATG 1 chr3L:5920963-5921083 ( 9) GGCGCATG 1 chr2R:24116677-24116797 ( 24) GGCGCAGG 1 chr3R:28520512-28520632 ( 35) GGCGCAGG 1 chr2L:20720118-20720238 ( 3) TGCGCAGC 1 chr3R:31824307-31824427 ( 69) TGCGCATC 1 chr3L:19087496-19087616 ( 70) TGCGCCTG 1 chr3L:5662701-5662821 ( 73) TGCGCAGC 1 chrX:12568603-12568723 ( 43) TGCGCAGC 1 chrX:10621490-10621610 ( 45) TGCGCCTG 1 chrX:282005-282125 ( 49) TGCGCCTG 1 chrX:8694210-8694330 ( 74) TGCGCAGC 1 chr2L:1048982-1049102 ( 55) TGCGCCTG 1 chr2R:24524577-24524697 ( 76) TGCGCAGC 1 chr2R:16764386-16764506 ( 27) TGCGCAGC 1 chrX:6081394-6081514 ( 67) TGCGCAGC 1 chr3L:152738-152858 ( 26) TGCGCCTG 1 chr3R:21821794-21821914 ( 61) TGCGCCGG 1 chr2L:2400128-2400248 ( 26) TGCGCAGC 1 chr3L:20104767-20104887 ( 112) TGCGCAGC 1 chr2L:1082844-1082964 ( 48) TGCGCCTG 1 chr3R:7265913-7266033 ( 111) TGCGCCTG 1 chr3L:267555-267675 ( 27) TGCGCAGC 1 chr2L:3090383-3090503 ( 38) TGCGCCTG 1 chr2R:9247207-9247327 ( 84) TGCGCAGC 1 chrX:11930875-11930995 ( 58) TGCGCCTG 1 chrX:932996-933116 ( 84) TGCGCCGG 1 chrX:15385583-15385703 ( 40) TGCGCCGG 1 chr2L:9272217-9272337 ( 8) TGCGCAAT 1 chr2L:2212566-2212686 ( 49) TGCGCAAT 1 chr2L:1346165-1346285 ( 34) TGCGCAAT 1 chr3R:4083886-4084006 ( 61) TGCGCAAT 1 chrX:2259903-2260023 ( 69) TGCGCAAT 1 chr2R:24607598-24607718 ( 49) TGCGCAAT 1 chr2R:9506316-9506436 ( 90) TGCGCACT 1 chr3L:12328962-12329082 ( 16) TGCGCACT 1 chr3L:9774118-9774238 ( 90) TGCGCACT 1 chr2L:19516180-19516300 ( 70) TGCGCACT 1 chr2L:2815809-2815929 ( 13) TGCGCACT 1 chr2R:10729251-10729371 ( 49) TGCGCACT 1 chr2R:11846154-11846274 ( 104) TGCGCACT 1 chr2R:14765567-14765687 ( 62) AGCGCATG 1 chrX:5649508-5649628 ( 64) AGCGCATG 1 chr3R:24635079-24635199 ( 50) AGCGCATG 1 chrX:10906606-10906726 ( 60) AGCGCAGG 1 chrX:18860184-18860304 ( 21) AGCGCATG 1 chr3R:17902351-17902471 ( 43) AGCGCATG 1 chr3L:7189940-7190060 ( 67) AGCGCATG 1 chrX:2383588-2383708 ( 43) AGCGCAGG 1 chrX:11983978-11984098 ( 94) AGCGCATG 1 chr3R:24984257-24984377 ( 32) GGCGCAGT 1 chr3R:18269955-18270075 ( 81) GGCGCATT 1 chr2L:10435607-10435727 ( 54) GGCGCAGT 1 chr3L:9643945-9644065 ( 70) GGCGCAGT 1 chr2L:21632415-21632535 ( 65) TGCGCAAA 1 chr2R:20986413-20986533 ( 33) TGCGCAAA 1 chrX:12389296-12389416 ( 108) TGCGCAAA 1 chr2R:24031170-24031290 ( 76) TGCGCAAA 1 chr2L:14408532-14408652 ( 70) TGCGCCTT 1 chr3R:5387986-5388106 ( 68) TGCGCACA 1 chr2R:5749484-5749604 ( 61) TGCGCACA 1 chr3R:7394178-7394298 ( 107) TGCGCACA 1 chr2L:13355077-13355197 ( 71) TGCGCACA 1 chr3R:6762274-6762394 ( 29) CGCGCATG 1 chr4:253314-253434 ( 66) CGCGCATG 1 chr3L:19237923-19238043 ( 72) CGCGCATG 1 chr2L:10373974-10374094 ( 45) CGCGCATG 1 chr3L:19994204-19994324 ( 94) CGCGCATG 1 chr3L:1661882-1662002 ( 16) GGCGCAAG 1 chr2R:13805971-13806091 ( 46) GGCGCAGA 1 chr3L:312595-312715 ( 101) GGCGCACG 1 chr3L:17148074-17148194 ( 39) GGCGCAGA 1 chr2R:15115138-15115258 ( 47) GGCGCAGA 1 chr3R:11542958-11543078 ( 75) GGCGCACG 1 chr3R:11563283-11563403 ( 73) TGCGCCAG 1 chr2R:6040281-6040401 ( 107) GGCGCACG 1 chrX:4075526-4075646 ( 52) TGCGCCGA 1 chrX:5637643-5637763 ( 5) TGCGCCGA 1 chr3L:4188059-4188179 ( 44) TGCGCCGA 1 chr2L:15435046-15435166 ( 58) TGCGCACC 1 chr3R:25032825-25032945 ( 72) TGCGCCGA 1 chr3L:19601531-19601651 ( 101) AGCGCATT 1 chr2R:18690706-18690826 ( 54) TGCGCTGG 1 chr3R:28146449-28146569 ( 56) GGCGCCTG 1 chr3R:12451989-12452109 ( 66) GGCGCAGC 1 chr3R:16427693-16427813 ( 88) CGCGCATT 1 chr2R:16765973-16766093 ( 81) TGCGCCGC 1 chr3R:25969058-25969178 ( 109) TGCGCCAT 1 chr3R:29969725-29969845 ( 74) TGCGCCCT 1 chr3R:5523367-5523487 ( 54) TGCGCTGT 1 chr3L:22273855-22273975 ( 76) TGCGCTTT 1 chr2L:5956292-5956412 ( 45) TGCGCTGT 1 chrX:21338284-21338404 ( 65) TGCGCGTG 1 chrX:13669626-13669746 ( 12) TGCGCGGG 1 chrX:2636424-2636544 ( 97) TGCGCGTG 1 chr2L:18887026-18887146 ( 107) CGCGCATA 1 chr3L:17149993-17150113 ( 87) GGCGCAAA 1 chr2R:14755817-14755937 ( 52) TGCGCCAA 1 chr2R:11442381-11442501 ( 87) TGCGCCAA 1 chrX:16844528-16844648 ( 59) TGCGCCAA 1 chr3L:8241068-8241188 ( 47) AGCGCAAT 1 chrX:2061964-2062084 ( 79) TGCGCCAA 1 chrX:17611592-17611712 ( 57) CGCGCAGC 1 chr2R:18718074-18718194 ( 25) TGCGCTCG 1 chr2L:11086512-11086632 ( 82) CGCGCCTG 1 chr3R:18949243-18949363 ( 41) CGCGCCTG 1 chr3R:18153844-18153964 ( 30) TGCGCCAC 1 chr2L:4852744-4852864 ( 78) CGCGCACT 1 chrX:1508380-1508500 ( 89) TGCGCTGC 1 chrX:12922492-12922612 ( 45) TGCGCTGC 1 chr3L:19584561-19584681 ( 29) AGCGCCAG 1 chr3R:10640954-10641074 ( 73) AGCGCCAG 1 chrX:14599554-14599674 ( 83) AGCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.19911 E= 2.5e-170 -189 -241 -84 163 -1444 -1444 192 -1444 -1444 193 -1444 -1444 -1444 -1444 192 -1444 -1444 193 -1444 -1444 180 -87 -430 -293 -111 -128 62 65 -79 -155 103 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 223 E= 2.5e-170 0.062780 0.049327 0.147982 0.739910 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.811659 0.143498 0.013453 0.031390 0.107623 0.107623 0.408072 0.376682 0.134529 0.089686 0.542601 0.233184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAKG MEME-1 regular expression -------------------------------------------------------------------------------- TGCGCA[GT][GT] -------------------------------------------------------------------------------- Time 7.33 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-2 width = 8 sites = 53 llr = 429 E-value = 1.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::1:: pos.-specific C a17:9:9: probability G :1:::2:: matrix T :83a171a bits 2.1 * 1.9 * * * 1.7 * * * 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 * *** ** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10444129-10444249 109 1.56e-05 CTCTCTTATC CTCTCTCT CTGC chr3L:1577477-1577597 87 1.56e-05 AATCGGACCT CTCTCTCT CCCGCACACT chrX:5363278-5363398 102 1.56e-05 AAGCCGctct ctctctct ctctttctca chr3L:2824855-2824975 46 1.56e-05 CCTCCCACAA CTCTCTCT GTCTTTCGGC chr3R:5523367-5523487 95 1.56e-05 GAGAGCGGCC CTCTCTCT TTGCCTCTCA chrX:8694210-8694330 26 1.56e-05 GTTTTTCCCT CTCTCTCT ATCTCTGGCT chr3R:22470214-22470334 65 1.56e-05 CGCTCTTACG CTCTCTCT TGGCAGGCGC chr3L:17149993-17150113 39 1.56e-05 CGCTCTCTCA CTCTCTCT AGCTACCGCT chr2R:16764386-16764506 68 1.56e-05 tgtcctttct ctctctct ctTTGTTTAC chr2R:14755817-14755937 29 1.56e-05 AGCTCTCTCG CTCTCTCT CGTCCTTAAA chrX:5637643-5637763 112 1.56e-05 ctttcgctcg ctctctct c chr3L:20104767-20104887 50 1.56e-05 CTCGTTCTAC CTCTCTCT TTCGCACTTT chrX:16844528-16844648 15 1.56e-05 ACCCCAGAAA CTCTCTCT CGACTCGCTC chr3R:18949243-18949363 21 1.56e-05 CCATCGTTAT CTCTCTCT TGTGGAAAAG chr3R:4419608-4419728 49 3.00e-05 ATCTCTCTTC CTTTCTCT CCCTCACTTT chr3R:17506997-17507117 7 3.00e-05 CTGCGA CTTTCTCT GCTGTCAACA chrX:10627526-10627646 87 3.00e-05 GCAGGGGTGC CTTTCTCT TGTCTTGCTC chr3R:6853171-6853291 32 4.72e-05 CTGTATATTG CTCTCGCT TTGGCCGCAG chr2R:18690706-18690826 45 4.72e-05 CAGTCGCTCC CTCTCGCT CTGCGCTGGA chr2L:18887026-18887146 52 4.72e-05 ATTGCCGTCT CTCTCGCT CTCGTGCGGC chr3R:29969725-29969845 90 4.72e-05 CTATCTTTTC CTCTCGCT CTGCCTTCGT chr3L:20306295-20306415 100 4.72e-05 TGGCACTTCA CTCTCGCT TTTCGCCTGC chr2R:14765567-14765687 45 6.24e-05 TATTTGGAAG CTCTCACT TCCAACCACA chr2L:14134279-14134399 99 6.24e-05 ACCTAAGGTC CTCTCACT CGCGCGCCTC chr3L:22273855-22273975 17 7.76e-05 AGTTAGCTTT CACTCTCT CCGCTCGGGC chr3L:267555-267675 64 7.76e-05 CGCCGGTGCG CACTCTCT CAGTAGAAAC chr2L:5314899-5315019 108 7.76e-05 CACTGGGTGG CACTCTCT GGAGT chr3L:1627038-1627158 53 7.76e-05 TGCGCAGGCG CACTCTCT CCCTTGGCTA chrX:22480729-22480849 98 9.19e-05 TTTCGGTTTG CTCTCTTT GCTTTCGTCC chr3L:4188059-4188179 14 9.19e-05 CATCGGAGCC CTCTCTTT CTGGCGGGGA chr2R:5804587-5804707 37 1.08e-04 TTCCGCTCAG CTTTCGCT CAGCTGAGCC chr2L:21378144-21378264 55 1.08e-04 AGTCCGTTCT CTTTCGCT TACTGCGCAA chr3L:21194505-21194625 29 1.39e-04 TCGCGGCACT CGCTCTCT GGCTGTTTGG chr3R:24514757-24514877 32 1.39e-04 GCGCAGACGC CGCTCTCT TGCTCTCTTG chrX:14599554-14599674 50 1.53e-04 CCGCACAAAA CTTTCACT GCCACAACGC chr2L:1048982-1049102 7 1.53e-04 TCGCAG CTTTCACT TTCGTGGCCC chr3L:9643945-9644065 93 1.53e-04 AGCTAAAAAG CTTTCACT TGGCGCCTTC chr2R:6040281-6040401 88 1.53e-04 CTTGGTCGAG CTTTCACT TTCTTCCTCT chr2R:10861842-10861962 10 1.84e-04 TTAATGGCT CCCTCTCT CCCTGCGCAG chr2R:5749484-5749604 45 1.84e-04 CCCCCAGCAG CCCTCTCT TGCGTTTGTG chr3R:7265913-7266033 16 1.97e-04 TGTTGTAAAA CTTTCTTT AAGCACCCCT chr2L:2677650-2677770 55 2.14e-04 CCGCTCGGGT CACTCGCT ACTGCCGCTG chr2R:16207702-16207822 30 2.59e-04 GGCCATTTTC CTTTTTCT GCTCGGGAAA chr2L:21632415-21632535 99 2.59e-04 AAAAAGCTTG CTCTCGTT CGACCTCTGA chr2R:20986413-20986533 18 2.59e-04 GTGCCTATTC CTTTTTCT TCGGCTATGC chr3R:24457169-24457289 104 2.59e-04 CGCTCGCCAA CGTTCTCT CCGCCGCTC chr2L:21381518-21381638 15 2.59e-04 ATTCCAGTTG CGTTCTCT TTAGTGCTTT chr2R:9247207-9247327 70 2.59e-04 GCTTTTATAC CTCTCGTT GGATTCTGCG chr2L:5539194-5539314 1 3.03e-04 . CCTTCTCT TCCTGTCGCA chrX:5649508-5649628 4 3.38e-04 CTC CTCTTGCT TAGCTGGGTG chrX:10621490-10621610 102 3.52e-04 CGCTCCCCCG CACTCTTT TATCGCCACT chr3R:4291559-4291679 17 4.17e-04 TGCCAGGCTG CTCTTACT AGCAAATCAG chr2R:18718074-18718194 96 4.34e-04 CTGCGAAATC CTCGCTCT CGGGCAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10444129-10444249 1.6e-05 108_[+2]_4 chr3L:1577477-1577597 1.6e-05 86_[+2]_26 chrX:5363278-5363398 1.6e-05 101_[+2]_11 chr3L:2824855-2824975 1.6e-05 45_[+2]_67 chr3R:5523367-5523487 1.6e-05 94_[+2]_18 chrX:8694210-8694330 1.6e-05 25_[+2]_87 chr3R:22470214-22470334 1.6e-05 64_[+2]_48 chr3L:17149993-17150113 1.6e-05 38_[+2]_74 chr2R:16764386-16764506 1.6e-05 67_[+2]_45 chr2R:14755817-14755937 1.6e-05 28_[+2]_84 chrX:5637643-5637763 1.6e-05 111_[+2]_1 chr3L:20104767-20104887 1.6e-05 49_[+2]_63 chrX:16844528-16844648 1.6e-05 14_[+2]_98 chr3R:18949243-18949363 1.6e-05 20_[+2]_92 chr3R:4419608-4419728 3e-05 48_[+2]_64 chr3R:17506997-17507117 3e-05 6_[+2]_106 chrX:10627526-10627646 3e-05 86_[+2]_26 chr3R:6853171-6853291 4.7e-05 31_[+2]_81 chr2R:18690706-18690826 4.7e-05 44_[+2]_68 chr2L:18887026-18887146 4.7e-05 51_[+2]_61 chr3R:29969725-29969845 4.7e-05 89_[+2]_23 chr3L:20306295-20306415 4.7e-05 99_[+2]_13 chr2R:14765567-14765687 6.2e-05 44_[+2]_68 chr2L:14134279-14134399 6.2e-05 98_[+2]_14 chr3L:22273855-22273975 7.8e-05 16_[+2]_96 chr3L:267555-267675 7.8e-05 63_[+2]_49 chr2L:5314899-5315019 7.8e-05 107_[+2]_5 chr3L:1627038-1627158 7.8e-05 52_[+2]_60 chrX:22480729-22480849 9.2e-05 97_[+2]_15 chr3L:4188059-4188179 9.2e-05 13_[+2]_99 chr2R:5804587-5804707 0.00011 36_[+2]_76 chr2L:21378144-21378264 0.00011 54_[+2]_58 chr3L:21194505-21194625 0.00014 28_[+2]_84 chr3R:24514757-24514877 0.00014 31_[+2]_81 chrX:14599554-14599674 0.00015 49_[+2]_63 chr2L:1048982-1049102 0.00015 6_[+2]_106 chr3L:9643945-9644065 0.00015 92_[+2]_20 chr2R:6040281-6040401 0.00015 87_[+2]_25 chr2R:10861842-10861962 0.00018 9_[+2]_103 chr2R:5749484-5749604 0.00018 44_[+2]_68 chr3R:7265913-7266033 0.0002 15_[+2]_97 chr2L:2677650-2677770 0.00021 54_[+2]_58 chr2R:16207702-16207822 0.00026 29_[+2]_83 chr2L:21632415-21632535 0.00026 98_[+2]_14 chr2R:20986413-20986533 0.00026 17_[+2]_95 chr3R:24457169-24457289 0.00026 103_[+2]_9 chr2L:21381518-21381638 0.00026 14_[+2]_98 chr2R:9247207-9247327 0.00026 69_[+2]_43 chr2L:5539194-5539314 0.0003 [+2]_112 chrX:5649508-5649628 0.00034 3_[+2]_109 chrX:10621490-10621610 0.00035 101_[+2]_11 chr3R:4291559-4291679 0.00042 16_[+2]_96 chr2R:18718074-18718194 0.00043 95_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=53 chr2R:10444129-10444249 ( 109) CTCTCTCT 1 chr3L:1577477-1577597 ( 87) CTCTCTCT 1 chrX:5363278-5363398 ( 102) CTCTCTCT 1 chr3L:2824855-2824975 ( 46) CTCTCTCT 1 chr3R:5523367-5523487 ( 95) CTCTCTCT 1 chrX:8694210-8694330 ( 26) CTCTCTCT 1 chr3R:22470214-22470334 ( 65) CTCTCTCT 1 chr3L:17149993-17150113 ( 39) CTCTCTCT 1 chr2R:16764386-16764506 ( 68) CTCTCTCT 1 chr2R:14755817-14755937 ( 29) CTCTCTCT 1 chrX:5637643-5637763 ( 112) CTCTCTCT 1 chr3L:20104767-20104887 ( 50) CTCTCTCT 1 chrX:16844528-16844648 ( 15) CTCTCTCT 1 chr3R:18949243-18949363 ( 21) CTCTCTCT 1 chr3R:4419608-4419728 ( 49) CTTTCTCT 1 chr3R:17506997-17507117 ( 7) CTTTCTCT 1 chrX:10627526-10627646 ( 87) CTTTCTCT 1 chr3R:6853171-6853291 ( 32) CTCTCGCT 1 chr2R:18690706-18690826 ( 45) CTCTCGCT 1 chr2L:18887026-18887146 ( 52) CTCTCGCT 1 chr3R:29969725-29969845 ( 90) CTCTCGCT 1 chr3L:20306295-20306415 ( 100) CTCTCGCT 1 chr2R:14765567-14765687 ( 45) CTCTCACT 1 chr2L:14134279-14134399 ( 99) CTCTCACT 1 chr3L:22273855-22273975 ( 17) CACTCTCT 1 chr3L:267555-267675 ( 64) CACTCTCT 1 chr2L:5314899-5315019 ( 108) CACTCTCT 1 chr3L:1627038-1627158 ( 53) CACTCTCT 1 chrX:22480729-22480849 ( 98) CTCTCTTT 1 chr3L:4188059-4188179 ( 14) CTCTCTTT 1 chr2R:5804587-5804707 ( 37) CTTTCGCT 1 chr2L:21378144-21378264 ( 55) CTTTCGCT 1 chr3L:21194505-21194625 ( 29) CGCTCTCT 1 chr3R:24514757-24514877 ( 32) CGCTCTCT 1 chrX:14599554-14599674 ( 50) CTTTCACT 1 chr2L:1048982-1049102 ( 7) CTTTCACT 1 chr3L:9643945-9644065 ( 93) CTTTCACT 1 chr2R:6040281-6040401 ( 88) CTTTCACT 1 chr2R:10861842-10861962 ( 10) CCCTCTCT 1 chr2R:5749484-5749604 ( 45) CCCTCTCT 1 chr3R:7265913-7266033 ( 16) CTTTCTTT 1 chr2L:2677650-2677770 ( 55) CACTCGCT 1 chr2R:16207702-16207822 ( 30) CTTTTTCT 1 chr2L:21632415-21632535 ( 99) CTCTCGTT 1 chr2R:20986413-20986533 ( 18) CTTTTTCT 1 chr3R:24457169-24457289 ( 104) CGTTCTCT 1 chr2L:21381518-21381638 ( 15) CGTTCTCT 1 chr2R:9247207-9247327 ( 70) CTCTCGTT 1 chr2L:5539194-5539314 ( 1) CCTTCTCT 1 chrX:5649508-5649628 ( 4) CTCTTGCT 1 chrX:10621490-10621610 ( 102) CACTCTTT 1 chr3R:4291559-4291679 ( 17) CTCTTACT 1 chr2R:18718074-18718194 ( 96) CTCGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2363 E= 1.7e-004 -1237 193 -1237 -1237 -104 -221 -181 165 -1237 145 -1237 24 -1237 -1237 -381 203 -1237 182 -1237 -167 -82 -1237 -35 146 -1237 176 -1237 -108 -1237 -1237 -1237 206 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.7e-004 0.000000 1.000000 0.000000 0.000000 0.113208 0.056604 0.075472 0.754717 0.000000 0.716981 0.000000 0.283019 0.000000 0.000000 0.018868 0.981132 0.000000 0.924528 0.000000 0.075472 0.132075 0.000000 0.207547 0.660377 0.000000 0.886792 0.000000 0.113208 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- CT[CT]TC[TG]CT -------------------------------------------------------------------------------- Time 13.16 secs. ******************************************************************************** ******************************************************************************** MOTIF SRAAAAKC MEME-3 width = 8 sites = 37 llr = 318 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :5aaa7:: pos.-specific C 4::::::a probability G 65::::4: matrix T :::::36: bits 2.1 *** 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.3 **** * Entropy 1.1 ******** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAAATC consensus CA TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20315032-20315152 71 2.45e-05 GCGCAGTTCG GAAAAATC GGAAAACCGG chr3L:21279278-21279398 97 2.45e-05 GTAACCAGGC GAAAAATC AATAATCCTG chr3R:24485435-24485555 96 2.45e-05 CAAAAATATT GAAAAATC AGTTAACAAG chr2L:21378144-21378264 22 2.45e-05 CATATTACCG GAAAAATC GAGAGCTTCT chr3R:10640954-10641074 4 2.45e-05 TTG GGAAAATC GAGAGGAAAG chr3R:28520512-28520632 74 2.45e-05 GGAAAACTTT GGAAAATC AATAACCCCT chr2L:21632415-21632535 88 5.15e-05 GCTTTCAGCC GAAAAAGC TTGCTCTCGT chr2R:20986413-20986533 60 5.15e-05 CCTACCCCGC GGAAAAGC GCTTTCAGCT chr3R:6853171-6853291 9 5.15e-05 CCGCAGTG GGAAAAGC TTTAACTGTA chr2R:15115138-15115258 11 5.15e-05 TGTGGAAAGC GGAAAAGC GGAGGGGTGT chr2R:11442381-11442501 51 5.15e-05 CTCGGTATGC GGAAAAGC TCCGTGGCAG chr2R:16071130-16071250 66 5.15e-05 CAAGCAGCAG GAAAAAGC AACAGTCGGC chr2R:15727247-15727367 30 5.15e-05 AACAGAGCGC GGAAAAGC GTGCGCAGAC chr3R:18949243-18949363 32 5.15e-05 TCTCTCTTGT GGAAAAGC TCGCGCCTGC chr3L:5920963-5921083 98 5.15e-05 AGTGACAGCG GGAAAAGC ACACTCGTCC chr3R:18216028-18216148 39 5.15e-05 ACGAACGGGA GGAAAAGC ACGAAGGCGA chr3L:9751769-9751889 28 7.56e-05 CGAAAATGGT CGAAAATC GGGGGTGGCT chrX:15062774-15062894 33 7.56e-05 TTGCAACCCC CAAAAATC GGGGGGTGCT chr3L:8241068-8241188 30 7.56e-05 TGCATCTGCA CAAAAATC CTGCGGGACA chrX:18860184-18860304 81 7.56e-05 CCACGACCAG CAAAAATC GATGGCATCG chrX:8187162-8187282 90 7.56e-05 CTATACCCTG CAAAAATC CCCCCGCCAA chr2R:16207702-16207822 43 1.01e-04 TTTCTGCTCG GGAAATTC GCACTGCGCA chr3R:21821794-21821914 76 1.01e-04 CGGCGCCGTG GGAAATTC GTGTAAAGCA chr2R:12266085-12266205 19 1.01e-04 gctTGCACGT GGAAATTC TGTGCGCATG chr3L:12748866-12748986 27 1.01e-04 CGATGAAAAA GAAAATTC GCAGTGCGCA chr2L:6011276-6011396 65 1.01e-04 CACTTTTTTG GGAAATTC GCGGAGCATG chr3R:17902351-17902471 105 1.01e-04 TCTTTCGACG GGAAATTC CAACGCAT chr2R:13362960-13363080 98 1.28e-04 GGACATGTCC CAAAAAGC TCGACCAAAG chr3R:25969058-25969178 24 1.28e-04 AAAGTCAAAA CAAAAAGC TTTTCATTCA chr3R:7265913-7266033 93 1.28e-04 ACAACCCACA CAAAAAGC TGCTTGCTCG chr2R:24116677-24116797 56 1.28e-04 TGTGCTCCCT CAAAAAGC TCACGTCGCC chr3R:4291559-4291679 2 1.55e-04 A GAAAATGC CAGGCTGCTC chr2R:10350052-10350172 68 1.55e-04 AAAGCGAAAC GGAAATGC GGGAACTCAC chr2R:6073469-6073589 37 1.80e-04 GATACCAGGA CGAAATTC GGCATCACCA chr3R:5413722-5413842 7 1.80e-04 TCTGCC CGAAATTC GAAGTTGTTC chr3R:13155640-13155760 96 1.80e-04 CTCCGGAGTT CGAAATTC GAAATAGTCG chr3R:10224719-10224839 111 1.80e-04 GGCCAACTGT CAAAATTC AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20315032-20315152 2.4e-05 70_[+3]_42 chr3L:21279278-21279398 2.4e-05 96_[+3]_16 chr3R:24485435-24485555 2.4e-05 95_[+3]_17 chr2L:21378144-21378264 2.4e-05 21_[+3]_91 chr3R:10640954-10641074 2.4e-05 3_[+3]_109 chr3R:28520512-28520632 2.4e-05 73_[+3]_39 chr2L:21632415-21632535 5.1e-05 87_[+3]_25 chr2R:20986413-20986533 5.1e-05 59_[+3]_53 chr3R:6853171-6853291 5.1e-05 8_[+3]_104 chr2R:15115138-15115258 5.1e-05 10_[+3]_102 chr2R:11442381-11442501 5.1e-05 50_[+3]_62 chr2R:16071130-16071250 5.1e-05 65_[+3]_47 chr2R:15727247-15727367 5.1e-05 29_[+3]_83 chr3R:18949243-18949363 5.1e-05 31_[+3]_81 chr3L:5920963-5921083 5.1e-05 97_[+3]_15 chr3R:18216028-18216148 5.1e-05 38_[+3]_74 chr3L:9751769-9751889 7.6e-05 27_[+3]_85 chrX:15062774-15062894 7.6e-05 32_[+3]_80 chr3L:8241068-8241188 7.6e-05 29_[+3]_83 chrX:18860184-18860304 7.6e-05 80_[+3]_32 chrX:8187162-8187282 7.6e-05 89_[+3]_23 chr2R:16207702-16207822 0.0001 42_[+3]_70 chr3R:21821794-21821914 0.0001 75_[+3]_37 chr2R:12266085-12266205 0.0001 18_[+3]_94 chr3L:12748866-12748986 0.0001 26_[+3]_86 chr2L:6011276-6011396 0.0001 64_[+3]_48 chr3R:17902351-17902471 0.0001 104_[+3]_8 chr2R:13362960-13363080 0.00013 97_[+3]_15 chr3R:25969058-25969178 0.00013 23_[+3]_89 chr3R:7265913-7266033 0.00013 92_[+3]_20 chr2R:24116677-24116797 0.00013 55_[+3]_57 chr3R:4291559-4291679 0.00016 1_[+3]_111 chr2R:10350052-10350172 0.00016 67_[+3]_45 chr2R:6073469-6073589 0.00018 36_[+3]_76 chr3R:5413722-5413842 0.00018 6_[+3]_106 chr3R:13155640-13155760 0.00018 95_[+3]_17 chr3R:10224719-10224839 0.00018 110_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SRAAAAKC width=8 seqs=37 chr2L:20315032-20315152 ( 71) GAAAAATC 1 chr3L:21279278-21279398 ( 97) GAAAAATC 1 chr3R:24485435-24485555 ( 96) GAAAAATC 1 chr2L:21378144-21378264 ( 22) GAAAAATC 1 chr3R:10640954-10641074 ( 4) GGAAAATC 1 chr3R:28520512-28520632 ( 74) GGAAAATC 1 chr2L:21632415-21632535 ( 88) GAAAAAGC 1 chr2R:20986413-20986533 ( 60) GGAAAAGC 1 chr3R:6853171-6853291 ( 9) GGAAAAGC 1 chr2R:15115138-15115258 ( 11) GGAAAAGC 1 chr2R:11442381-11442501 ( 51) GGAAAAGC 1 chr2R:16071130-16071250 ( 66) GAAAAAGC 1 chr2R:15727247-15727367 ( 30) GGAAAAGC 1 chr3R:18949243-18949363 ( 32) GGAAAAGC 1 chr3L:5920963-5921083 ( 98) GGAAAAGC 1 chr3R:18216028-18216148 ( 39) GGAAAAGC 1 chr3L:9751769-9751889 ( 28) CGAAAATC 1 chrX:15062774-15062894 ( 33) CAAAAATC 1 chr3L:8241068-8241188 ( 30) CAAAAATC 1 chrX:18860184-18860304 ( 81) CAAAAATC 1 chrX:8187162-8187282 ( 90) CAAAAATC 1 chr2R:16207702-16207822 ( 43) GGAAATTC 1 chr3R:21821794-21821914 ( 76) GGAAATTC 1 chr2R:12266085-12266205 ( 19) GGAAATTC 1 chr3L:12748866-12748986 ( 27) GAAAATTC 1 chr2L:6011276-6011396 ( 65) GGAAATTC 1 chr3R:17902351-17902471 ( 105) GGAAATTC 1 chr2R:13362960-13363080 ( 98) CAAAAAGC 1 chr3R:25969058-25969178 ( 24) CAAAAAGC 1 chr3R:7265913-7266033 ( 93) CAAAAAGC 1 chr2R:24116677-24116797 ( 56) CAAAAAGC 1 chr3R:4291559-4291679 ( 2) GAAAATGC 1 chr2R:10350052-10350172 ( 68) GGAAATGC 1 chr2R:6073469-6073589 ( 37) CGAAATTC 1 chr3R:5413722-5413842 ( 7) CGAAATTC 1 chr3R:13155640-13155760 ( 96) CGAAATTC 1 chr3R:10224719-10224839 ( 111) CAAAATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9987 E= 3.1e-001 -1185 42 129 -1185 98 -1185 103 -1185 210 -1185 -1185 -1185 210 -1185 -1185 -1185 210 -1185 -1185 -1185 154 -1185 -1185 44 -1185 -1185 71 124 -1185 193 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.1e-001 0.000000 0.351351 0.648649 0.000000 0.459459 0.000000 0.540541 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.675676 0.000000 0.000000 0.324324 0.000000 0.000000 0.432432 0.567568 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SRAAAAKC MEME-3 regular expression -------------------------------------------------------------------------------- [GC][GA]AAA[AT][TG]C -------------------------------------------------------------------------------- Time 18.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGHB MEME-4 width = 8 sites = 38 llr = 321 E-value = 1.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::31 pos.-specific C a::a::22 probability G ::a::a23 matrix T ::::a:44 bits 2.1 * * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.2 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ****** * 0.0 -------- Multilevel CAGCTGTT consensus AG sequence CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29660295-29660415 40 1.55e-05 GGCGTTTTTC CAGCTGTT CGCTTGGCGC chr2L:2212566-2212686 74 1.55e-05 ACATCGTTAT CAGCTGTT GGCACAGAGG chr3R:5523367-5523487 111 1.55e-05 CTTTGCCTCT CAGCTGTT TG chr2L:21071516-21071636 62 1.55e-05 GGCGCGAACT CAGCTGTT CCTTTGGGCT chrX:16844528-16844648 87 1.55e-05 TACATCCAGC CAGCTGTT ATTTATCGAT chr2L:18009785-18009905 40 1.55e-05 TTGCCTAGAA CAGCTGTT TGGGGCATCA chr2L:5109199-5109319 53 1.55e-05 CCTCCAGTCC CAGCTGTT CGCCGGCGTC chr2R:20986413-20986533 82 3.06e-05 TCAGCTCGAA CAGCTGAT GGCGCCGGAG chr3R:5387986-5388106 19 3.06e-05 TCACATACAG CAGCTGAT TTGGGATGCT chr3L:2653154-2653274 19 3.06e-05 GAGCCGCCAT CAGCTGAT GGCTGCTAGG chr2R:22870963-22871083 83 3.06e-05 GACCATCGCT CAGCTGAT TTGGCGCAGG chr3L:5920963-5921083 54 3.06e-05 TTGGATGCCA CAGCTGAT GGGGCACGTG chr3L:1577477-1577597 7 4.77e-05 CCGCTG CAGCTGTG TTCTCGTCCT chr2L:21075238-21075358 101 4.77e-05 atccgGTGGA CAGCTGTG CGTCGGAATC chr3R:5376701-5376821 40 4.77e-05 TGCGTCCTTT CAGCTGTG GCTGCCATAA chr3R:10226407-10226527 112 4.77e-05 GCGGAACTCT CAGCTGTG T chr3R:6853171-6853291 47 6.47e-05 GCTTTGGCCG CAGCTGCT GCAGGACGAG chr3L:2824855-2824975 8 6.47e-05 TAATATG CAGCTGCT CTCTCTCTTC chr3L:1627038-1627158 80 6.47e-05 ACCTGCTCTC CAGCTGCT CATCCTCCTC chr3R:28520512-28520632 52 6.47e-05 GCTCCACGAA CAGCTGCT GCTGGGAAAA chr2R:5804587-5804707 45 8.13e-05 AGCTTTCGCT CAGCTGAG CCAGGCGCAG chrX:10627526-10627646 26 8.13e-05 CCCTTGCAAC CAGCTGAG TGGTAAGTTG chr2L:13355077-13355197 44 8.13e-05 CAATGCGGCA CAGCTGAG TAGCTCAAGG chr3R:10640954-10641074 95 9.83e-05 ACAATTTTGA CAGCTGTC AACGCGCCGA chr2L:5314899-5315019 9 1.34e-04 GATGGCCG CAGCTGCG GGTCCCTGGT chrX:6081394-6081514 96 1.51e-04 TCGCCGCTCT CAGCTGAC GTCCTCGCAG chr4:483815-483935 40 1.51e-04 AACTCAAAGC CAGCTGAC AACAAATAAG chr2R:24570562-24570682 19 1.70e-04 GCAGTTCGTA CAGCTGGG ACATGCGCTC chr3R:24457169-24457289 33 1.70e-04 GACTTTTTCG CAGCTGGG GCCGCCGCCG chr2R:10249110-10249230 78 1.70e-04 ACTATCGGAA CAGCTGGG ACAGAATGTT chrX:15385583-15385703 5 1.70e-04 TCAG CAGCTGGG CATGATTTGG chr2L:20341823-20341943 13 1.88e-04 CTCGAGTTGA CAGCTGCC ACATTTCTCA chr2L:14408532-14408652 93 1.88e-04 AAATATTTTC CAGCTGCC TGACTTTTCG chr2L:5539194-5539314 22 1.88e-04 TGTCGCAATG CAGCTGCC GGAAGTTCCT chr2L:18321077-18321197 86 2.07e-04 TCTTGGGGTA CAGCTGGC ATTTGCCATG chrX:11930875-11930995 75 2.07e-04 GCGCCCGGAT CAGCTGGC AACCTTCCTG chr2L:21632415-21632535 29 2.22e-04 CAGGATAGCC CAGCTGTA CCGTTATCAG chr2R:18718074-18718194 108 2.22e-04 CGCTCTCGGG CAGCTGTA TTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29660295-29660415 1.6e-05 39_[+4]_73 chr2L:2212566-2212686 1.6e-05 73_[+4]_39 chr3R:5523367-5523487 1.6e-05 110_[+4]_2 chr2L:21071516-21071636 1.6e-05 61_[+4]_51 chrX:16844528-16844648 1.6e-05 86_[+4]_26 chr2L:18009785-18009905 1.6e-05 39_[+4]_73 chr2L:5109199-5109319 1.6e-05 52_[+4]_60 chr2R:20986413-20986533 3.1e-05 81_[+4]_31 chr3R:5387986-5388106 3.1e-05 18_[+4]_94 chr3L:2653154-2653274 3.1e-05 18_[+4]_94 chr2R:22870963-22871083 3.1e-05 82_[+4]_30 chr3L:5920963-5921083 3.1e-05 53_[+4]_59 chr3L:1577477-1577597 4.8e-05 6_[+4]_106 chr2L:21075238-21075358 4.8e-05 100_[+4]_12 chr3R:5376701-5376821 4.8e-05 39_[+4]_73 chr3R:10226407-10226527 4.8e-05 111_[+4]_1 chr3R:6853171-6853291 6.5e-05 46_[+4]_66 chr3L:2824855-2824975 6.5e-05 7_[+4]_105 chr3L:1627038-1627158 6.5e-05 79_[+4]_33 chr3R:28520512-28520632 6.5e-05 51_[+4]_61 chr2R:5804587-5804707 8.1e-05 44_[+4]_68 chrX:10627526-10627646 8.1e-05 25_[+4]_87 chr2L:13355077-13355197 8.1e-05 43_[+4]_69 chr3R:10640954-10641074 9.8e-05 94_[+4]_18 chr2L:5314899-5315019 0.00013 8_[+4]_104 chrX:6081394-6081514 0.00015 95_[+4]_17 chr4:483815-483935 0.00015 39_[+4]_73 chr2R:24570562-24570682 0.00017 18_[+4]_94 chr3R:24457169-24457289 0.00017 32_[+4]_80 chr2R:10249110-10249230 0.00017 77_[+4]_35 chrX:15385583-15385703 0.00017 4_[+4]_108 chr2L:20341823-20341943 0.00019 12_[+4]_100 chr2L:14408532-14408652 0.00019 92_[+4]_20 chr2L:5539194-5539314 0.00019 21_[+4]_91 chr2L:18321077-18321197 0.00021 85_[+4]_27 chrX:11930875-11930995 0.00021 74_[+4]_38 chr2L:21632415-21632535 0.00022 28_[+4]_84 chr2R:18718074-18718194 0.00022 107_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGHB width=8 seqs=38 chr3R:29660295-29660415 ( 40) CAGCTGTT 1 chr2L:2212566-2212686 ( 74) CAGCTGTT 1 chr3R:5523367-5523487 ( 111) CAGCTGTT 1 chr2L:21071516-21071636 ( 62) CAGCTGTT 1 chrX:16844528-16844648 ( 87) CAGCTGTT 1 chr2L:18009785-18009905 ( 40) CAGCTGTT 1 chr2L:5109199-5109319 ( 53) CAGCTGTT 1 chr2R:20986413-20986533 ( 82) CAGCTGAT 1 chr3R:5387986-5388106 ( 19) CAGCTGAT 1 chr3L:2653154-2653274 ( 19) CAGCTGAT 1 chr2R:22870963-22871083 ( 83) CAGCTGAT 1 chr3L:5920963-5921083 ( 54) CAGCTGAT 1 chr3L:1577477-1577597 ( 7) CAGCTGTG 1 chr2L:21075238-21075358 ( 101) CAGCTGTG 1 chr3R:5376701-5376821 ( 40) CAGCTGTG 1 chr3R:10226407-10226527 ( 112) CAGCTGTG 1 chr3R:6853171-6853291 ( 47) CAGCTGCT 1 chr3L:2824855-2824975 ( 8) CAGCTGCT 1 chr3L:1627038-1627158 ( 80) CAGCTGCT 1 chr3R:28520512-28520632 ( 52) CAGCTGCT 1 chr2R:5804587-5804707 ( 45) CAGCTGAG 1 chrX:10627526-10627646 ( 26) CAGCTGAG 1 chr2L:13355077-13355197 ( 44) CAGCTGAG 1 chr3R:10640954-10641074 ( 95) CAGCTGTC 1 chr2L:5314899-5315019 ( 9) CAGCTGCG 1 chrX:6081394-6081514 ( 96) CAGCTGAC 1 chr4:483815-483935 ( 40) CAGCTGAC 1 chr2R:24570562-24570682 ( 19) CAGCTGGG 1 chr3R:24457169-24457289 ( 33) CAGCTGGG 1 chr2R:10249110-10249230 ( 78) CAGCTGGG 1 chrX:15385583-15385703 ( 5) CAGCTGGG 1 chr2L:20341823-20341943 ( 13) CAGCTGCC 1 chr2L:14408532-14408652 ( 93) CAGCTGCC 1 chr2L:5539194-5539314 ( 22) CAGCTGCC 1 chr2L:18321077-18321197 ( 86) CAGCTGGC 1 chrX:11930875-11930995 ( 75) CAGCTGGC 1 chr2L:21632415-21632535 ( 29) CAGCTGTA 1 chr2R:18718074-18718194 ( 108) CAGCTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.73116 E= 1.9e-001 -1189 193 -1189 -1189 210 -1189 -1189 -1189 -1189 -1189 192 -1189 -1189 193 -1189 -1189 -1189 -1189 -1189 206 -1189 -1189 192 -1189 18 -32 -75 62 -215 -32 25 81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.9e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.263158 0.210526 0.157895 0.368421 0.052632 0.210526 0.315789 0.421053 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGHB MEME-4 regular expression -------------------------------------------------------------------------------- CAGCTG[TAC][TGC] -------------------------------------------------------------------------------- Time 24.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGAGC MEME-5 width = 8 sites = 12 llr = 127 E-value = 1.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:a:: pos.-specific C 2::::::a probability G 8:a:a:a: matrix T :::::::: bits 2.1 * * * 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14765567-14765687 113 1.63e-05 gatggagaga gagagagc chr2R:10861842-10861962 100 1.63e-05 AAAAGAAACA GAGAGAGC CTGACCTAGT chr3L:17148074-17148194 75 1.63e-05 GTGGCTAACA gagagagc gagcaggaca chr3R:7639513-7639633 72 1.63e-05 CGAACTAATC GAGAGAGC TGCAAAAATT chr2L:4852744-4852864 46 1.63e-05 AGGAATCGCA GAGAGAGC TTTTGCGGAA chr2L:1082844-1082964 10 1.63e-05 AAGCCCAGT GAGAGAGC CGTCATTTGA chr3R:31621973-31622093 24 1.63e-05 aagtccgaga gagagagc gcgggagagC chr3L:4188059-4188179 106 1.63e-05 AAGGAAGGGA GAGAGAGC TTTAGCC chr2R:16071130-16071250 98 1.63e-05 AAGTGCGAGC GAGAGAGC ACTGGCCGGC chr2L:5109199-5109319 93 1.63e-05 AGAAATCCTC GAGAGAGC AGGTGCTGGA chr3L:22911846-22911966 64 3.25e-05 ACTGAAAGAG CAGAGAGC GGAGGAGCAT chr2R:15727247-15727367 62 3.25e-05 CAAAAAATGG CAGAGAGC GCGTGTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14765567-14765687 1.6e-05 112_[+5] chr2R:10861842-10861962 1.6e-05 99_[+5]_13 chr3L:17148074-17148194 1.6e-05 74_[+5]_38 chr3R:7639513-7639633 1.6e-05 71_[+5]_41 chr2L:4852744-4852864 1.6e-05 45_[+5]_67 chr2L:1082844-1082964 1.6e-05 9_[+5]_103 chr3R:31621973-31622093 1.6e-05 23_[+5]_89 chr3L:4188059-4188179 1.6e-05 105_[+5]_7 chr2R:16071130-16071250 1.6e-05 97_[+5]_15 chr2L:5109199-5109319 1.6e-05 92_[+5]_20 chr3L:22911846-22911966 3.3e-05 63_[+5]_49 chr2R:15727247-15727367 3.3e-05 61_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAGC width=8 seqs=12 chr2R:14765567-14765687 ( 113) GAGAGAGC 1 chr2R:10861842-10861962 ( 100) GAGAGAGC 1 chr3L:17148074-17148194 ( 75) GAGAGAGC 1 chr3R:7639513-7639633 ( 72) GAGAGAGC 1 chr2L:4852744-4852864 ( 46) GAGAGAGC 1 chr2L:1082844-1082964 ( 10) GAGAGAGC 1 chr3R:31621973-31622093 ( 24) GAGAGAGC 1 chr3L:4188059-4188179 ( 106) GAGAGAGC 1 chr2R:16071130-16071250 ( 98) GAGAGAGC 1 chr2L:5109199-5109319 ( 93) GAGAGAGC 1 chr3L:22911846-22911966 ( 64) CAGAGAGC 1 chr2R:15727247-15727367 ( 62) CAGAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.7e+002 -1023 -65 165 -1023 210 -1023 -1023 -1023 -1023 -1023 191 -1023 210 -1023 -1023 -1023 -1023 -1023 191 -1023 210 -1023 -1023 -1023 -1023 -1023 191 -1023 -1023 193 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.7e+002 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGC MEME-5 regular expression -------------------------------------------------------------------------------- GAGAGAGC -------------------------------------------------------------------------------- Time 30.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:993876-993996 1.20e-01 64_[+1(3.61e-05)]_48 chr3R:24828397-24828517 6.21e-02 120 chrX:19961032-19961152 9.51e-02 87_[+1(6.87e-05)]_25 chr2R:11846154-11846274 1.00e-01 120 chr3L:19601531-19601651 2.22e-01 120 chr2L:13355077-13355197 4.11e-02 43_[+4(8.13e-05)]_69 chr3R:28520512-28520632 7.31e-04 51_[+4(6.47e-05)]_14_[+3(2.45e-05)]_\ 39 chr2R:13129040-13129160 1.21e-01 43_[+1(6.87e-05)]_69 chr3R:10640954-10641074 4.88e-03 3_[+3(2.45e-05)]_15_[+3(2.45e-05)]_\ 60_[+4(9.83e-05)]_18 chr2R:10729251-10729371 2.72e-01 120 chr2L:5539194-5539314 9.67e-04 45_[+1(3.61e-05)]_67 chr3R:18216028-18216148 4.02e-02 38_[+3(5.15e-05)]_74 chr3L:20306295-20306415 2.78e-01 99_[+2(4.72e-05)]_13 chrX:1981862-1981982 1.55e-02 23_[+1(6.87e-05)]_89 chr3R:15369881-15370001 2.60e-02 68_[+1(3.61e-05)]_44 chr2L:5956292-5956412 3.96e-01 120 chrX:15385583-15385703 3.51e-02 120 chr3R:28047311-28047431 2.33e-02 61_[+1(3.61e-05)]_51 chr3R:10226407-10226527 1.92e-02 30_[+1(6.87e-05)]_73_[+4(4.77e-05)]_\ 1 chr2R:8943108-8943228 3.14e-02 29_[+1(3.61e-05)]_83 chrX:932996-933116 2.24e-01 120 chr2R:6040281-6040401 8.15e-03 120 chrX:11983978-11984098 4.84e-02 120 chr3L:20426050-20426170 6.49e-01 120 chr2R:14201218-14201338 1.52e-01 34_[+1(3.61e-05)]_78 chr2R:10249110-10249230 1.04e-01 120 chrX:11930875-11930995 2.00e-02 120 chr3R:10224719-10224839 9.32e-03 54_[+1(3.61e-05)]_58 chr2R:24116677-24116797 1.95e-03 120 chr2L:10310780-10310900 9.36e-02 13_[+1(3.61e-05)]_99 chr3L:21625674-21625794 5.34e-02 105_[+1(6.87e-05)]_7 chr2R:9247207-9247327 1.84e-02 120 chrX:2383588-2383708 2.70e-02 120 chrX:14266196-14266316 3.49e-02 90_[+1(3.61e-05)]_22 chr2R:6891538-6891658 4.80e-01 120 chr2R:24607598-24607718 1.65e-01 120 chr3L:5920963-5921083 3.53e-04 53_[+4(3.06e-05)]_36_[+3(5.15e-05)]_\ 15 chr3R:25032825-25032945 3.00e-01 120 chr2R:5668310-5668430 2.09e-02 23_[+1(3.61e-05)]_89 chr3R:18949243-18949363 9.67e-04 2_[+2(7.76e-05)]_10_[+2(1.56e-05)]_\ 3_[+3(5.15e-05)]_81 chr2L:21378144-21378264 1.89e-04 21_[+3(2.45e-05)]_36_[+1(8.54e-05)]_\ 47 chr3L:7189940-7190060 9.77e-02 120 chr2L:5050998-5051118 8.46e-02 120 chr2L:2815809-2815929 6.69e-02 120 chr2L:11086512-11086632 2.92e-01 120 chr2L:5109199-5109319 1.93e-05 52_[+4(1.55e-05)]_11_[+1(3.61e-05)]_\ 13_[+5(1.63e-05)]_20 chr2R:22870963-22871083 5.55e-03 64_[+1(6.87e-05)]_10_[+4(3.06e-05)]_\ 30 chr3R:17902351-17902471 2.58e-02 120 chr2R:15727247-15727367 4.38e-04 29_[+3(5.15e-05)]_24_[+5(3.25e-05)]_\ 51 chr3L:19994204-19994324 3.00e-01 120 chr4:483815-483935 5.08e-03 77_[+1(3.61e-05)]_35 chr3R:5376701-5376821 1.84e-03 39_[+4(4.77e-05)]_73 chr2R:16765973-16766093 1.52e-01 120 chr3L:1627038-1627158 7.55e-04 42_[+1(3.61e-05)]_2_[+2(7.76e-05)]_\ 19_[+4(6.47e-05)]_33 chr3L:8576576-8576696 1.70e-01 11_[+1(3.61e-05)]_101 chr2L:10373974-10374094 1.00e-01 120 chrX:2259903-2260023 3.95e-01 120 chr3R:21775864-21775984 2.55e-02 46_[+1(3.61e-05)]_66 chrX:2061964-2062084 3.90e-01 120 chr2L:6011276-6011396 1.46e-02 120 chr3R:27662967-27663087 3.67e-02 120 chr3L:2653154-2653274 6.05e-03 18_[+4(3.06e-05)]_94 chr3R:5172115-5172235 3.19e-02 80_[+1(3.61e-05)]_32 chr3R:24514757-24514877 4.34e-03 120 chr2L:14408532-14408652 9.64e-03 120 chr2L:153298-153418 1.29e-02 94_[+1(3.61e-05)]_18 chr2L:19586489-19586609 1.57e-01 120 chr3R:29969725-29969845 4.15e-02 89_[+2(4.72e-05)]_23 chr3L:19237923-19238043 3.12e-01 120 chr2L:3090383-3090503 9.99e-02 120 chr3L:9643945-9644065 2.15e-03 120 chr2L:10435607-10435727 1.74e-01 120 chr3R:22031911-22032031 9.76e-02 95_[+1(3.61e-05)]_17 chr3R:11563283-11563403 1.87e-01 120 chr2L:5314899-5315019 1.15e-04 107_[+2(7.76e-05)]_5 chr2R:16071130-16071250 3.22e-04 65_[+3(5.15e-05)]_24_[+5(1.63e-05)]_\ 15 chr4:305807-305927 1.70e-02 48_[+1(3.61e-05)]_64 chr3L:267555-267675 5.92e-03 63_[+2(7.76e-05)]_49 chrX:10627526-10627646 3.97e-04 25_[+4(8.13e-05)]_40_[+1(3.61e-05)]_\ 5_[+2(3.00e-05)]_26 chr2R:18718074-18718194 8.85e-03 120 chrX:13669426-13669546 9.21e-01 120 chr3R:19508527-19508647 2.67e-01 54_[+1(8.54e-05)]_58 chr2L:3718008-3718128 1.39e-02 74_[+1(3.61e-05)]_38 chr2R:22109115-22109235 3.17e-02 75_[+1(3.61e-05)]_37 chrX:8187162-8187282 8.03e-03 59_[+1(3.61e-05)]_22_[+3(7.56e-05)]_\ 23 chr3R:12451989-12452109 1.04e-01 120 chr3R:7265913-7266033 1.26e-03 120 chr2L:18009785-18009905 7.30e-03 39_[+4(1.55e-05)]_17_[+1(6.87e-05)]_\ 48 chr3R:20866315-20866435 4.42e-04 24_[+1(6.87e-05)]_88 chr3L:19542985-19543105 1.52e-01 120 chrX:18860184-18860304 1.23e-03 80_[+3(7.56e-05)]_32 chr3L:22273855-22273975 5.82e-02 16_[+2(7.76e-05)]_96 chr3L:12748866-12748986 2.17e-03 38_[+1(3.61e-05)]_74 chr3R:7394178-7394298 5.62e-02 120 chr3L:8241068-8241188 2.68e-02 29_[+3(7.56e-05)]_83 chr3L:7601560-7601680 1.16e-02 56_[+1(3.61e-05)]_56 chr3R:28146449-28146569 1.19e-01 120 chr2L:20713801-20713921 7.10e-02 52_[+1(6.87e-05)]_60 chr3R:9739965-9740085 6.20e-02 120 chr3R:4083886-4084006 6.70e-02 120 chr2L:10376397-10376517 6.74e-01 120 chr2L:1346165-1346285 3.24e-01 120 chr2L:15435046-15435166 4.70e-01 120 chr3L:20541314-20541434 1.72e-02 65_[+1(6.87e-05)]_47 chr3L:4188059-4188179 1.59e-04 13_[+2(9.19e-05)]_84_[+5(1.63e-05)]_\ 7 chrX:16844528-16844648 3.25e-04 14_[+2(1.56e-05)]_16_[+2(9.19e-05)]_\ 40_[+4(1.55e-05)]_26 chr3R:31621973-31622093 5.91e-03 23_[+5(1.63e-05)]_89 chr2L:19516180-19516300 2.11e-01 120 chr2L:15200585-15200705 9.09e-03 112_[+1(6.87e-05)] chr3R:11542958-11543078 3.24e-01 120 chrX:12922492-12922612 6.44e-02 120 chr3R:18269955-18270075 2.11e-01 120 chr3L:5678330-5678450 9.64e-02 74_[+1(6.87e-05)]_38 chr2L:21075238-21075358 8.66e-03 43_[+1(3.61e-05)]_49_[+4(4.77e-05)]_\ 12 chrX:10906606-10906726 2.25e-01 120 chr2L:1082844-1082964 1.22e-02 9_[+5(1.63e-05)]_103 chr3R:25131189-25131309 2.90e-01 120 chr2R:5749484-5749604 7.01e-02 120 chr2R:11442381-11442501 4.14e-02 50_[+3(5.15e-05)]_62 chr2R:10350052-10350172 9.20e-03 120 chr2L:13215137-13215257 1.77e-02 120 chr2R:24031170-24031290 1.00e-01 120 chr2R:12266085-12266205 1.71e-02 28_[+1(3.61e-05)]_84 chr3L:20104767-20104887 9.30e-03 33_[+2(3.00e-05)]_8_[+2(1.56e-05)]_\ 63 chr2R:24739355-24739475 4.33e-02 81_[+1(6.87e-05)]_31 chr2R:13106205-13106325 2.84e-02 40_[+1(3.61e-05)]_72 chr3L:1661882-1662002 2.66e-01 120 chr3L:6843506-6843626 4.71e-02 21_[+1(6.87e-05)]_39_[+1(3.61e-05)]_\ 44 chr2R:16637250-16637370 1.62e-01 112_[+1(3.61e-05)] chr2L:18887026-18887146 3.51e-02 26_[+2(9.19e-05)]_17_[+2(4.72e-05)]_\ 61 chr3R:24485435-24485555 1.64e-01 95_[+3(2.45e-05)]_17 chr2R:15115138-15115258 4.10e-02 10_[+3(5.15e-05)]_102 chr2L:16671082-16671202 9.80e-02 120 chr3L:3123463-3123583 9.36e-02 51_[+1(6.87e-05)]_61 chr2L:4852744-4852864 1.81e-02 45_[+5(1.63e-05)]_67 chr2L:2400128-2400248 4.71e-02 29_[+4(9.83e-05)]_83 chr2R:951255-951375 1.24e-01 43_[+1(3.61e-05)]_69 chr3R:29195055-29195175 1.65e-02 62_[+1(6.87e-05)]_50 chr3R:21821794-21821914 3.60e-03 14_[+5(6.17e-05)]_98 chr3R:25969058-25969178 2.19e-02 120 chr3L:152738-152858 1.71e-01 120 chr3R:16427693-16427813 5.39e-02 120 chr2L:21148361-21148481 1.30e-01 19_[+1(6.87e-05)]_93 chr3L:4086019-4086139 3.62e-01 120 chrX:1508380-1508500 5.78e-01 120 chr3R:13155640-13155760 5.05e-02 120 chr3L:21279278-21279398 3.02e-04 27_[+1(6.87e-05)]_61_[+3(2.45e-05)]_\ 16 chr2R:5804587-5804707 6.76e-04 44_[+4(8.13e-05)]_68 chr2R:24810484-24810604 5.10e-02 46_[+1(3.61e-05)]_66 chr2L:14134279-14134399 1.32e-02 73_[+1(3.61e-05)]_17_[+2(6.24e-05)]_\ 14 chr2R:24910481-24910601 3.23e-02 120 chr2L:21071516-21071636 1.21e-02 61_[+4(1.55e-05)]_51 chr2R:22454656-22454776 6.63e-01 120 chrX:5637643-5637763 4.49e-02 22_[+2(1.56e-05)]_59_[+2(3.00e-05)]_\ 14_[+2(1.56e-05)]_1 chrX:15062774-15062894 6.73e-02 32_[+3(7.56e-05)]_80 chr3R:4291559-4291679 1.65e-03 85_[+1(3.61e-05)]_27 chrX:6081394-6081514 9.09e-03 120 chr2L:8303259-8303379 3.00e-01 120 chrX:1692634-1692754 6.98e-02 120 chrX:16987058-16987178 3.57e-01 120 chr2L:21381518-21381638 1.77e-02 51_[+1(3.61e-05)]_61 chr2R:14755817-14755937 1.75e-02 28_[+2(1.56e-05)]_84 chr2R:16764386-16764506 2.33e-04 30_[+4(4.77e-05)]_7_[+2(1.56e-05)]_\ 12_[+2(1.56e-05)]_47 chr3R:5387986-5388106 3.50e-02 18_[+4(3.06e-05)]_94 chr2R:24524577-24524697 8.61e-02 120 chr2L:1672513-1672633 8.52e-01 120 chr2L:1048982-1049102 2.23e-02 120 chr2R:9658244-9658364 3.46e-02 92_[+1(3.61e-05)]_20 chr3R:17506997-17507117 6.76e-04 6_[+2(3.00e-05)]_17_[+1(3.61e-05)]_\ 81 chr2L:2677650-2677770 2.75e-01 120 chr3L:17149993-17150113 2.54e-02 38_[+2(1.56e-05)]_74 chr2L:18321077-18321197 1.53e-02 8_[+1(3.61e-05)]_104 chr3L:9751769-9751889 9.75e-02 27_[+3(7.56e-05)]_85 chrX:22480729-22480849 6.13e-04 65_[+1(3.61e-05)]_24_[+2(9.19e-05)]_\ 15 chr2R:10798710-10798830 1.71e-02 120 chr3L:9774118-9774238 5.61e-03 7_[+4(8.13e-05)]_25_[+4(8.13e-05)]_\ 72 chr3R:22470214-22470334 6.90e-02 64_[+2(1.56e-05)]_48 chr3R:5413722-5413842 2.58e-03 39_[+1(3.61e-05)]_73 chrX:8694210-8694330 1.91e-02 23_[+2(1.56e-05)]_89 chr3R:7639513-7639633 4.74e-04 71_[+5(1.63e-05)]_41 chr3L:1629282-1629402 1.38e-01 120 chrX:14599554-14599674 1.65e-01 120 chr3R:5523367-5523487 1.19e-04 94_[+2(1.56e-05)]_8_[+4(1.55e-05)]_\ 2 chr2R:18690706-18690826 6.47e-02 44_[+2(4.72e-05)]_68 chr2L:16691620-16691740 1.66e-02 62_[+1(3.61e-05)]_50 chr2R:22354696-22354816 4.04e-01 120 chr3R:24457169-24457289 6.05e-02 120 chrX:2636424-2636544 6.26e-01 120 chr2L:20341823-20341943 2.73e-01 120 chr2L:2212566-2212686 1.26e-02 73_[+4(1.55e-05)]_39 chrX:282005-282125 1.16e-01 120 chr2R:24570562-24570682 1.63e-02 120 chr3L:17148074-17148194 1.74e-02 74_[+5(1.63e-05)]_38 chr3L:12328962-12329082 1.92e-02 120 chrX:10621490-10621610 1.57e-01 120 chr3L:7077414-7077534 8.06e-01 120 chrX:12568603-12568723 5.53e-03 18_[+5(6.17e-05)]_94 chrX:12389296-12389416 5.23e-02 120 chr3L:12853576-12853696 9.87e-03 45_[+1(6.87e-05)]_67 chrX:15982764-15982884 9.32e-01 120 chrX:17611592-17611712 2.67e-01 120 chr2L:80185-80305 1.64e-01 74_[+1(3.61e-05)]_38 chrX:13669626-13669746 1.26e-01 120 chr4:253314-253434 5.03e-01 120 chr2L:10053692-10053812 3.99e-02 35_[+1(3.61e-05)]_77 chr2L:7358912-7359032 3.14e-02 57_[+1(6.87e-05)]_55 chrX:7907761-7907881 3.20e-02 71_[+1(3.61e-05)]_41 chr3L:312595-312715 4.73e-02 120 chr3L:2824855-2824975 6.21e-04 13_[+2(1.56e-05)]_24_[+2(1.56e-05)]_\ 67 chr3R:6853171-6853291 5.13e-04 8_[+3(5.15e-05)]_15_[+2(4.72e-05)]_\ 7_[+4(6.47e-05)]_66 chr2L:3088363-3088483 2.66e-02 24_[+1(3.61e-05)]_88 chr3R:18153844-18153964 5.21e-01 120 chr2L:9272217-9272337 7.85e-02 120 chr2R:10861842-10861962 3.40e-04 20_[+1(6.87e-05)]_71_[+5(1.63e-05)]_\ 13 chr2R:24876495-24876615 4.47e-02 38_[+1(3.61e-05)]_74 chrX:21338284-21338404 2.44e-01 120 chr3R:24635079-24635199 3.40e-01 120 chr3L:21194505-21194625 1.14e-02 11_[+1(6.87e-05)]_101 chrX:5649508-5649628 1.06e-02 120 chr2R:14765567-14765687 4.07e-04 44_[+2(6.24e-05)]_60_[+5(1.63e-05)] chrX:5363278-5363398 5.16e-04 62_[+1(3.61e-05)]_27_[+2(1.56e-05)]_\ [+2(1.56e-05)]_7 chr2R:12121244-12121364 4.37e-03 107_[+1(3.61e-05)]_5 chr3L:19584561-19584681 1.03e-01 120 chr2R:20986413-20986533 1.00e-04 59_[+3(5.15e-05)]_14_[+4(3.06e-05)]_\ 31 chr2L:21632415-21632535 1.55e-04 87_[+3(5.15e-05)]_25 chr2L:13285919-13286039 6.10e-04 78_[+1(6.87e-05)]_21_[+5(6.17e-05)]_\ 5 chr3R:4419608-4419728 2.26e-04 48_[+2(3.00e-05)]_20_[+1(3.61e-05)]_\ 36 chr3L:5662701-5662821 3.16e-02 120 chr3L:19087496-19087616 1.02e-01 120 chr2R:13805971-13806091 6.44e-02 120 chr2R:9506316-9506436 1.70e-02 120 chr2R:6073469-6073589 2.34e-01 120 chr3L:1577477-1577597 4.05e-03 6_[+4(4.77e-05)]_70_[+2(1.56e-05)]_\ 17_[+2(9.19e-05)]_3 chrX:4075526-4075646 5.44e-01 120 chr3L:19818819-19818939 8.30e-02 16_[+1(6.87e-05)]_96 chr3R:24984257-24984377 2.12e-01 120 chrX:14602148-14602268 7.36e-03 22_[+1(3.61e-05)]_90 chr2L:20315032-20315152 6.93e-03 59_[+1(6.87e-05)]_3_[+3(2.45e-05)]_\ 16_[+3(2.45e-05)]_18 chr3L:22911846-22911966 4.44e-03 11_[+1(6.87e-05)]_44_[+5(3.25e-05)]_\ 49 chrX:2081974-2082094 1.11e-01 42_[+1(3.61e-05)]_70 chr2R:13362960-13363080 7.66e-03 120 chr3R:29660295-29660415 2.96e-03 39_[+4(1.55e-05)]_73 chrX:530874-530994 6.58e-02 120 chrX:8129311-8129431 6.23e-02 112_[+1(3.61e-05)] chr2R:10444129-10444249 1.11e-02 108_[+2(1.56e-05)]_4 chr3R:12548346-12548466 6.73e-01 120 chr3R:31824307-31824427 2.26e-01 120 chr2L:20720118-20720238 3.38e-02 120 chr2R:16207702-16207822 7.76e-04 54_[+1(3.61e-05)]_58 chr3R:6762274-6762394 4.95e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************