******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/en.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:3057957-3058077 1.0000 120 chr2R:11528170-11528290 1.0000 120 chr2R:8655666-8655786 1.0000 120 chr3R:16190897-16191017 1.0000 120 chr2L:1650140-1650260 1.0000 120 chrX:10463246-10463366 1.0000 120 chr2L:7158943-7159063 1.0000 120 chr3R:16664269-16664389 1.0000 120 chrX:8677522-8677642 1.0000 120 chrX:16650582-16650702 1.0000 120 chr3R:20833906-20834026 1.0000 120 chr2R:11507529-11507649 1.0000 120 chr3L:17005107-17005227 1.0000 120 chrX:7703082-7703202 1.0000 120 chr3L:721124-721244 1.0000 120 chr2R:11410861-11410981 1.0000 120 chrX:5516177-5516297 1.0000 120 chrX:4322802-4322922 1.0000 120 chr3R:14311148-14311268 1.0000 120 chr2L:15643914-15644034 1.0000 120 chr3R:8072729-8072849 1.0000 120 chr2R:8649551-8649671 1.0000 120 chrX:13630391-13630511 1.0000 120 chr2L:18564699-18564819 1.0000 120 chr3L:20447818-20447938 1.0000 120 chr3R:9127342-9127462 1.0000 120 chr2R:19421627-19421747 1.0000 120 chr2L:18648372-18648492 1.0000 120 chrX:12221688-12221808 1.0000 120 chr2R:14485430-14485550 1.0000 120 chrX:4590614-4590734 1.0000 120 chr2L:10321400-10321520 1.0000 120 chrX:15027007-15027127 1.0000 120 chr3R:9888865-9888985 1.0000 120 chr2R:17548716-17548836 1.0000 120 chr2R:17723289-17723409 1.0000 120 chr2L:6357107-6357227 1.0000 120 chr3R:24320235-24320355 1.0000 120 chr2R:21714289-21714409 1.0000 120 chrX:4936641-4936761 1.0000 120 chr2R:21514493-21514613 1.0000 120 chr3R:15676334-15676454 1.0000 120 chr3L:3851961-3852081 1.0000 120 chr3L:3080777-3080897 1.0000 120 chrX:771836-771956 1.0000 120 chr3R:10388524-10388644 1.0000 120 chr3L:10866697-10866817 1.0000 120 chr3L:2468580-2468700 1.0000 120 chr3L:16279913-16280033 1.0000 120 chrX:11550202-11550322 1.0000 120 chr3R:31726056-31726176 1.0000 120 chr3R:7082128-7082248 1.0000 120 chrX:6615570-6615690 1.0000 120 chrX:17582784-17582904 1.0000 120 chr2R:13261879-13261999 1.0000 120 chr2L:20079041-20079161 1.0000 120 chr3R:5517611-5517731 1.0000 120 chr2L:108079-108199 1.0000 120 chr2L:7376310-7376430 1.0000 120 chr2R:18698848-18698968 1.0000 120 chrX:5086261-5086381 1.0000 120 chr3R:5065218-5065338 1.0000 120 chr2L:19059046-19059166 1.0000 120 chrX:7086733-7086853 1.0000 120 chr3L:7368001-7368121 1.0000 120 chr4:59109-59229 1.0000 120 chr2L:5805458-5805578 1.0000 120 chrX:11715229-11715349 1.0000 120 chr3R:23735147-23735267 1.0000 120 chr3L:3096374-3096494 1.0000 120 chr3L:20276804-20276924 1.0000 120 chrX:16105848-16105968 1.0000 120 chr2L:14024804-14024924 1.0000 120 chr2L:15432443-15432563 1.0000 120 chr3R:16748698-16748818 1.0000 120 chrX:17176693-17176813 1.0000 120 chr2R:12547901-12548021 1.0000 120 chr3L:13021934-13022054 1.0000 120 chr3R:6667385-6667505 1.0000 120 chr2L:14160974-14161094 1.0000 120 chr3R:14748778-14748898 1.0000 120 chr2L:18328832-18328952 1.0000 120 chr4:1219051-1219171 1.0000 120 chr2L:7525431-7525551 1.0000 120 chr2L:6723064-6723184 1.0000 120 chr3R:14708912-14709032 1.0000 120 chr3R:13016285-13016405 1.0000 120 chr3L:19847115-19847235 1.0000 120 chr2L:2162645-2162765 1.0000 120 chrX:1370139-1370259 1.0000 120 chr3L:8584221-8584341 1.0000 120 chr2R:15754397-15754517 1.0000 120 chr3R:29690563-29690683 1.0000 120 chr2R:20641617-20641737 1.0000 120 chr3L:11540439-11540559 1.0000 120 chr3R:26892865-26892985 1.0000 120 chr2L:3533264-3533384 1.0000 120 chr2R:12035146-12035266 1.0000 120 chr2L:858207-858327 1.0000 120 chr3L:3875102-3875222 1.0000 120 chr3R:26121877-26121997 1.0000 120 chr3L:20630805-20630925 1.0000 120 chr3L:7861093-7861213 1.0000 120 chr2L:2494625-2494745 1.0000 120 chr2L:3856372-3856492 1.0000 120 chr3L:5926124-5926244 1.0000 120 chr3R:25515491-25515611 1.0000 120 chr4:1146522-1146642 1.0000 120 chr2R:11792763-11792883 1.0000 120 chr2L:7984976-7985096 1.0000 120 chr2R:19146156-19146276 1.0000 120 chr2L:18505659-18505779 1.0000 120 chr3L:11273760-11273880 1.0000 120 chr2R:14136976-14137096 1.0000 120 chr2L:10516849-10516969 1.0000 120 chr3R:8171643-8171763 1.0000 120 chr2R:21183219-21183339 1.0000 120 chr2R:21527429-21527549 1.0000 120 chr3L:10745774-10745894 1.0000 120 chr3L:8440903-8441023 1.0000 120 chr2L:16520086-16520206 1.0000 120 chr3R:23028640-23028760 1.0000 120 chr3R:16704420-16704540 1.0000 120 chr2R:19413307-19413427 1.0000 120 chrX:20507873-20507993 1.0000 120 chr3L:21130974-21131094 1.0000 120 chrX:20631314-20631434 1.0000 120 chr2L:8554338-8554458 1.0000 120 chr2R:11628119-11628239 1.0000 120 chr2R:17796750-17796870 1.0000 120 chrX:7015073-7015193 1.0000 120 chr3L:11534016-11534136 1.0000 120 chr3L:11429883-11430003 1.0000 120 chr2L:8572992-8573112 1.0000 120 chr2R:20906673-20906793 1.0000 120 chr2L:16703825-16703945 1.0000 120 chr2L:6700761-6700881 1.0000 120 chr2L:6968299-6968419 1.0000 120 chr3L:10350876-10350996 1.0000 120 chr3R:23888821-23888941 1.0000 120 chr2L:5981015-5981135 1.0000 120 chr3R:14894548-14894668 1.0000 120 chr3R:4846928-4847048 1.0000 120 chr2R:21571370-21571490 1.0000 120 chr2L:16251920-16252040 1.0000 120 chr2R:20312572-20312692 1.0000 120 chr2R:15240293-15240413 1.0000 120 chr3L:5987857-5987977 1.0000 120 chr2L:10276905-10277025 1.0000 120 chr3R:28590660-28590780 1.0000 120 chrX:11622215-11622335 1.0000 120 chr2L:488297-488417 1.0000 120 chr3R:30532092-30532212 1.0000 120 chrX:18635426-18635546 1.0000 120 chr3L:12684828-12684948 1.0000 120 chr2R:10096797-10096917 1.0000 120 chr2L:16317898-16318018 1.0000 120 chr2L:3861554-3861674 1.0000 120 chr2L:3852307-3852427 1.0000 120 chr3L:8399168-8399288 1.0000 120 chrX:16158705-16158825 1.0000 120 chr2L:10143433-10143553 1.0000 120 chr3L:12529535-12529655 1.0000 120 chr3R:19831129-19831249 1.0000 120 chrX:15599855-15599975 1.0000 120 chr3R:23333820-23333940 1.0000 120 chr2R:11275933-11276053 1.0000 120 chr2R:14574258-14574378 1.0000 120 chr2L:22536564-22536684 1.0000 120 chr2L:222293-222413 1.0000 120 chrX:5883518-5883638 1.0000 120 chrX:1517739-1517859 1.0000 120 chrX:10515448-10515568 1.0000 120 chr2R:8064452-8064572 1.0000 120 chr3L:5974694-5974814 1.0000 120 chr3L:21954631-21954751 1.0000 120 chrX:20394205-20394325 1.0000 120 chr3R:10696460-10696580 1.0000 120 chr2R:11095304-11095424 1.0000 120 chrX:15844229-15844349 1.0000 120 chr3R:4319584-4319704 1.0000 120 chr4:406904-407024 1.0000 120 chr2R:17478628-17478748 1.0000 120 chr2L:3042236-3042356 1.0000 120 chr2L:5245751-5245871 1.0000 120 chr3L:12053823-12053943 1.0000 120 chr2R:12633504-12633624 1.0000 120 chr4:56274-56394 1.0000 120 chrX:2318457-2318577 1.0000 120 chr3L:14555255-14555375 1.0000 120 chr3R:30413957-30414077 1.0000 120 chr2R:11359171-11359291 1.0000 120 chr2R:11601044-11601164 1.0000 120 chr2R:6630653-6630773 1.0000 120 chrX:19770240-19770360 1.0000 120 chr3L:9899205-9899325 1.0000 120 chrX:11686369-11686489 1.0000 120 chr3R:10564340-10564460 1.0000 120 chr3R:28631900-28632020 1.0000 120 chr2L:19191967-19192087 1.0000 120 chr3L:3767946-3768066 1.0000 120 chr3L:11483327-11483447 1.0000 120 chr2L:6830352-6830472 1.0000 120 chr2L:19508718-19508838 1.0000 120 chr3R:9220160-9220280 1.0000 120 chr2R:8082800-8082920 1.0000 120 chrX:16773012-16773132 1.0000 120 chrX:20519208-20519328 1.0000 120 chr2L:12424710-12424830 1.0000 120 chr3L:16571560-16571680 1.0000 120 chr3L:6816308-6816428 1.0000 120 chr3L:3300411-3300531 1.0000 120 chr3R:5319180-5319300 1.0000 120 chr3R:19848014-19848134 1.0000 120 chr3L:1029746-1029866 1.0000 120 chrX:3085977-3086097 1.0000 120 chr3R:26654733-26654853 1.0000 120 chr2R:16837666-16837786 1.0000 120 chr2L:5425504-5425624 1.0000 120 chrX:18869556-18869676 1.0000 120 chr3R:29039733-29039853 1.0000 120 chr2L:14545467-14545587 1.0000 120 chr3R:31395333-31395453 1.0000 120 chrX:4617004-4617124 1.0000 120 chrX:5672563-5672683 1.0000 120 chr3R:17400780-17400900 1.0000 120 chr3L:14956376-14956496 1.0000 120 chrX:17297360-17297480 1.0000 120 chr3R:6468208-6468328 1.0000 120 chrX:526647-526767 1.0000 120 chrX:12469947-12470067 1.0000 120 chr2R:8615261-8615381 1.0000 120 chr2L:7641768-7641888 1.0000 120 chr3R:22596616-22596736 1.0000 120 chr3R:10079651-10079771 1.0000 120 chr2R:19205335-19205455 1.0000 120 chr2L:20650003-20650123 1.0000 120 chr2R:11636062-11636182 1.0000 120 chr2R:23574946-23575066 1.0000 120 chrX:21242022-21242142 1.0000 120 chr2L:7632922-7633042 1.0000 120 chr2L:73240-73360 1.0000 120 chr3L:5881620-5881740 1.0000 120 chr2R:13587143-13587263 1.0000 120 chr3L:16157977-16158097 1.0000 120 chr2R:22165540-22165660 1.0000 120 chr2R:7031151-7031271 1.0000 120 chr2L:2882952-2883072 1.0000 120 chr2R:20067257-20067377 1.0000 120 chr2R:16608428-16608548 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_en/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/en.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.181 G 0.185 T 0.319 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.181 G 0.185 T 0.319 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCA MEME-1 width = 8 sites = 24 llr = 225 E-value = 1.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 2:3a:6a: probability G :a6:73:: matrix T 8:2:31:: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** Relative 1.5 * * ** Entropy 1.2 * ***** (13.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus C C TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:73240-73360 70 3.77e-06 TTGTGTATAA TGGCGCCA CTGCGATTTT chr3L:3767946-3768066 27 3.77e-06 TTTCTCTGAG TGGCGCCA TCTGTGGTCG chr2R:20906673-20906793 83 3.77e-06 CAACGGTAGA TGGCGCCA GTGCAACATT chr2L:14160974-14161094 67 3.77e-06 CACACAGAGA TGGCGCCA ACACTTAACT chr2L:15643914-15644034 31 3.77e-06 AACGATACAC TGGCGCCA CCTGCACGTC chrX:5883518-5883638 68 9.77e-06 GTCCGCCAGA TGGCGGCA CAGCATGAAA chr2L:5805458-5805578 7 9.77e-06 TTTCTC TGGCGGCA TTCAACATGC chr3R:16748698-16748818 53 1.35e-05 TGCAACTCAG TGCCGCCA TCTGACGTAA chr2L:2882952-2883072 10 2.00e-05 TGCCTCTGC TGGCTCCA CATTTATGCA chrX:11686369-11686489 67 2.00e-05 AATGGCTCCA TGGCTCCA TGGCTCTCTT chr2L:19508718-19508838 73 2.22e-05 GTGACCATGA CGGCGGCA CACTTTACAT chr2R:8082800-8082920 92 2.80e-05 CCTTATCTGT TGCCGGCA CCCAAAGCGT chr3L:5987857-5987977 59 2.80e-05 ATTGCGGTCG CGCCGCCA CTTCCTGTTG chr2R:11628119-11628239 100 2.80e-05 TAACGAAAAC CGCCGCCA GGGGCGCTGC chr2L:7641768-7641888 2 3.45e-05 G TGTCGCCA CTCAAAACTC chr2L:7632922-7633042 47 4.49e-05 ACAAATGATT TGGCTGCA AGCATTGCGT chrX:5086261-5086381 99 4.49e-05 CAATTTCGTT CGGCTCCA CTGTTTAGTT chr3L:3080777-3080897 36 5.12e-05 GCTGCGCGTG TGCCTCCA GAGCTTGAAC chr2R:7031151-7031271 78 7.04e-05 TACAAATTGC TGGCGTCA ACAGGTTGCC chr2L:10276905-10277025 27 7.04e-05 GCAGCCGTCG TGTCGGCA GACATGTCTG chr2R:19413307-19413427 19 7.04e-05 ACGCCATCAT CGTCGCCA CCGGCGCGTC chrX:7086733-7086853 111 7.04e-05 TCTAATGCAA TGGCGTCA AG chr3R:10079651-10079771 20 8.43e-05 ACTGCACAGG TGCCTGCA GAAACATTTC chrX:21242022-21242142 66 9.55e-05 CGCCtttgtt tgtctcca tgtttgtttg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:73240-73360 3.8e-06 69_[+1]_43 chr3L:3767946-3768066 3.8e-06 26_[+1]_86 chr2R:20906673-20906793 3.8e-06 82_[+1]_30 chr2L:14160974-14161094 3.8e-06 66_[+1]_46 chr2L:15643914-15644034 3.8e-06 30_[+1]_82 chrX:5883518-5883638 9.8e-06 67_[+1]_45 chr2L:5805458-5805578 9.8e-06 6_[+1]_106 chr3R:16748698-16748818 1.3e-05 52_[+1]_60 chr2L:2882952-2883072 2e-05 9_[+1]_103 chrX:11686369-11686489 2e-05 66_[+1]_46 chr2L:19508718-19508838 2.2e-05 72_[+1]_40 chr2R:8082800-8082920 2.8e-05 91_[+1]_21 chr3L:5987857-5987977 2.8e-05 58_[+1]_54 chr2R:11628119-11628239 2.8e-05 99_[+1]_13 chr2L:7641768-7641888 3.5e-05 1_[+1]_111 chr2L:7632922-7633042 4.5e-05 46_[+1]_66 chrX:5086261-5086381 4.5e-05 98_[+1]_14 chr3L:3080777-3080897 5.1e-05 35_[+1]_77 chr2R:7031151-7031271 7e-05 77_[+1]_35 chr2L:10276905-10277025 7e-05 26_[+1]_86 chr2R:19413307-19413427 7e-05 18_[+1]_94 chrX:7086733-7086853 7e-05 110_[+1]_2 chr3R:10079651-10079771 8.4e-05 19_[+1]_93 chrX:21242022-21242142 9.5e-05 65_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCA width=8 seqs=24 chr2L:73240-73360 ( 70) TGGCGCCA 1 chr3L:3767946-3768066 ( 27) TGGCGCCA 1 chr2R:20906673-20906793 ( 83) TGGCGCCA 1 chr2L:14160974-14161094 ( 67) TGGCGCCA 1 chr2L:15643914-15644034 ( 31) TGGCGCCA 1 chrX:5883518-5883638 ( 68) TGGCGGCA 1 chr2L:5805458-5805578 ( 7) TGGCGGCA 1 chr3R:16748698-16748818 ( 53) TGCCGCCA 1 chr2L:2882952-2883072 ( 10) TGGCTCCA 1 chrX:11686369-11686489 ( 67) TGGCTCCA 1 chr2L:19508718-19508838 ( 73) CGGCGGCA 1 chr2R:8082800-8082920 ( 92) TGCCGGCA 1 chr3L:5987857-5987977 ( 59) CGCCGCCA 1 chr2R:11628119-11628239 ( 100) CGCCGCCA 1 chr2L:7641768-7641888 ( 2) TGTCGCCA 1 chr2L:7632922-7633042 ( 47) TGGCTGCA 1 chrX:5086261-5086381 ( 99) CGGCTCCA 1 chr3L:3080777-3080897 ( 36) TGCCTCCA 1 chr2R:7031151-7031271 ( 78) TGGCGTCA 1 chr2L:10276905-10277025 ( 27) TGTCGGCA 1 chr2R:19413307-19413427 ( 19) CGTCGCCA 1 chrX:7086733-7086853 ( 111) TGGCGTCA 1 chr3R:10079651-10079771 ( 20) TGCCTGCA 1 chrX:21242022-21242142 ( 66) TGTCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.9e+000 -1123 21 -1123 131 -1123 -1123 243 -1123 -1123 47 166 -94 -1123 247 -1123 -1123 -1123 -1123 194 -13 -1123 179 66 -194 -1123 247 -1123 -1123 167 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.9e+000 0.000000 0.208333 0.000000 0.791667 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.583333 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.708333 0.291667 0.000000 0.625000 0.291667 0.083333 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]G[GC]C[GT][CG]CA -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCTGC MEME-2 width = 8 sites = 16 llr = 156 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::1:1 pos.-specific C :8a1a:19 probability G 82:8:39: matrix T 2::1:7:: bits 2.5 * * 2.2 * * 2.0 * * * 1.7 * * ** Relative 1.5 ***** ** Entropy 1.2 ***** ** (14.0 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCTGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3085977-3086097 48 2.17e-06 CGCAACTTGT GCCGCTGC GAAGTCTTCA chr3R:16664269-16664389 67 3.42e-06 CGATGTGAAC GCCGCGGC ACCCCTGTAG chr2R:11628119-11628239 110 5.64e-06 CGCCGCCAGG GGCGCTGC TGC chr2R:20641617-20641737 113 5.64e-06 AACCCGTGTC GGCGCTGC chr2L:18564699-18564819 87 5.64e-06 CCGAAGGGGC GGCGCTGC GAAAAGGGGG chr3R:31395333-31395453 18 1.07e-05 ATAACCTTAA TCCGCTGC GCTTTGAGTA chr2L:5805458-5805578 32 1.07e-05 TGCCAATTAA TCCGCTGC TGATCACAGC chr2L:2882952-2883072 2 1.44e-05 T GCCTCTGC TGGCTCCACA chr2L:222293-222413 67 2.03e-05 AAGAAGAGCG GCCGCAGC GGGCACATTG chr2L:108079-108199 102 2.03e-05 TGTTGGCTGC GCCGCTGA TTTGGTTGCC chr3L:16279913-16280033 1 2.03e-05 . GCCGCTGA ATAAAGTCAA chr2R:16608428-16608548 82 2.46e-05 TTTAGCAGCA GCCCCTGC CTTTGGGGAC chr3R:5517611-5517731 80 2.46e-05 TTCTCTCTTT TCCGCGGC TAAGTGCGGC chr3L:10866697-10866817 16 2.89e-05 GGATTTTTGT GCCTCGGC AGCGTAATAA chr2L:2162645-2162765 29 3.61e-05 GTTGGAGAAA GACGCTGC TGCCATCGAG chr2L:6723064-6723184 109 3.73e-05 GGCCGGTTTG GCCGCGCC CATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3085977-3086097 2.2e-06 47_[+2]_65 chr3R:16664269-16664389 3.4e-06 66_[+2]_46 chr2R:11628119-11628239 5.6e-06 109_[+2]_3 chr2R:20641617-20641737 5.6e-06 112_[+2] chr2L:18564699-18564819 5.6e-06 86_[+2]_26 chr3R:31395333-31395453 1.1e-05 17_[+2]_95 chr2L:5805458-5805578 1.1e-05 31_[+2]_81 chr2L:2882952-2883072 1.4e-05 1_[+2]_111 chr2L:222293-222413 2e-05 66_[+2]_46 chr2L:108079-108199 2e-05 101_[+2]_11 chr3L:16279913-16280033 2e-05 [+2]_112 chr2R:16608428-16608548 2.5e-05 81_[+2]_31 chr3R:5517611-5517731 2.5e-05 79_[+2]_33 chr3L:10866697-10866817 2.9e-05 15_[+2]_97 chr2L:2162645-2162765 3.6e-05 28_[+2]_84 chr2L:6723064-6723184 3.7e-05 108_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCTGC width=8 seqs=16 chrX:3085977-3086097 ( 48) GCCGCTGC 1 chr3R:16664269-16664389 ( 67) GCCGCGGC 1 chr2R:11628119-11628239 ( 110) GGCGCTGC 1 chr2R:20641617-20641737 ( 113) GGCGCTGC 1 chr2L:18564699-18564819 ( 87) GGCGCTGC 1 chr3R:31395333-31395453 ( 18) TCCGCTGC 1 chr2L:5805458-5805578 ( 32) TCCGCTGC 1 chr2L:2882952-2883072 ( 2) GCCTCTGC 1 chr2L:222293-222413 ( 67) GCCGCAGC 1 chr2L:108079-108199 ( 102) GCCGCTGA 1 chr3L:16279913-16280033 ( 1) GCCGCTGA 1 chr2R:16608428-16608548 ( 82) GCCCCTGC 1 chr3R:5517611-5517731 ( 80) TCCGCGGC 1 chr3L:10866697-10866817 ( 16) GCCTCGGC 1 chr2L:2162645-2162765 ( 29) GACGCTGC 1 chr2L:6723064-6723184 ( 109) GCCGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.7e+003 -1064 -1064 213 -77 -233 205 2 -1064 -1064 247 -1064 -1064 -1064 -153 213 -135 -1064 247 -1064 -1064 -233 -1064 43 111 -1064 -153 234 -1064 -133 227 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.7e+003 0.000000 0.000000 0.812500 0.187500 0.062500 0.750000 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.812500 0.125000 0.000000 1.000000 0.000000 0.000000 0.062500 0.000000 0.250000 0.687500 0.000000 0.062500 0.937500 0.000000 0.125000 0.875000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCTGC MEME-2 regular expression -------------------------------------------------------------------------------- GCCGC[TG]GC -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF SBCAGTGB MEME-3 width = 8 sites = 22 llr = 203 E-value = 7.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 64a::::4 probability G 42::a:a2 matrix T :4:::a:4 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 ***** Relative 1.5 * ***** Entropy 1.2 * ***** (13.3 bits) 1.0 * ***** 0.7 * ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCAGTGT consensus GC C sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5926124-5926244 92 3.69e-06 TAATTTTTTT CCCAGTGC ACGTGCGCTT chr2L:73240-73360 105 7.46e-06 GATTGGTGTC GCCAGTGC AATGTGTT chr3L:11483327-11483447 113 7.46e-06 ACCAATTTCT GCCAGTGC chr3R:10564340-10564460 106 2.80e-05 TGCGAAAAAG CCCAGTGT GACCATG chr2R:11601044-11601164 105 2.80e-05 TATCATTTTT CTCAGTGC CTCTCGTT chr2L:5245751-5245871 100 2.80e-05 AATAATTTCT CGCAGTGC ATCATTTTCT chrX:15599855-15599975 98 2.80e-05 CTTTATTTTC CTCAGTGC ATTTCTTTTC chr2L:3861554-3861674 102 2.80e-05 CCAATTTTTT CGCAGTGC AGTCTCCTTT chr3L:10350876-10350996 95 2.80e-05 GCACATTTTT CGCAGTGC ACAAACAGAC chr2L:2162645-2162765 61 4.90e-05 TAATAAATCC GCCAGTGG GTAAGGAGAG chr2L:7525431-7525551 39 4.90e-05 TAGCTAATAA GCCAGTGT CAATATTTGG chr3L:13021934-13022054 76 4.90e-05 TTTTTGGGAC GCCAGTGT GCTCTTGTTT chrX:12221688-12221808 106 4.90e-05 ACATTTTTTT GCCAGTGT AGCAAGC chr2R:23574946-23575066 90 7.76e-05 CTGGATTTTC CTCAGTGT AGCCTAAAAC chr2R:11095304-11095424 88 7.76e-05 TGGCATTTCT CTCAGTGT AGTCAATGAA chr3R:28590660-28590780 8 7.76e-05 GACTTAT CGCAGTGG CGTTGTGATT chr2L:15432443-15432563 89 7.76e-05 AGTTCTTTTT CTCAGTGT GGTGTTTATG chr3L:3096374-3096494 5 7.76e-05 ATAG CTCAGTGG TAGAGCATTC chrX:771836-771956 20 7.76e-05 AAAACCAACT CTCAGTGG ACTAAACCTA chr2L:19508718-19508838 57 1.07e-04 CCAGCAGTCG GGCAGTGT GACCATGACG chr2R:12633504-12633624 103 1.07e-04 CGGTCACTCT GTCAGTGT CGTGGCTTGG chr3R:16190897-16191017 72 1.07e-04 CATTTGGTGC GTCAGTGG GGACTGTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5926124-5926244 3.7e-06 91_[+3]_21 chr2L:73240-73360 7.5e-06 104_[+3]_8 chr3L:11483327-11483447 7.5e-06 112_[+3] chr3R:10564340-10564460 2.8e-05 105_[+3]_7 chr2R:11601044-11601164 2.8e-05 104_[+3]_8 chr2L:5245751-5245871 2.8e-05 99_[+3]_13 chrX:15599855-15599975 2.8e-05 97_[+3]_15 chr2L:3861554-3861674 2.8e-05 101_[+3]_11 chr3L:10350876-10350996 2.8e-05 94_[+3]_18 chr2L:2162645-2162765 4.9e-05 60_[+3]_52 chr2L:7525431-7525551 4.9e-05 38_[+3]_74 chr3L:13021934-13022054 4.9e-05 75_[+3]_37 chrX:12221688-12221808 4.9e-05 105_[+3]_7 chr2R:23574946-23575066 7.8e-05 89_[+3]_23 chr2R:11095304-11095424 7.8e-05 87_[+3]_25 chr3R:28590660-28590780 7.8e-05 7_[+3]_105 chr2L:15432443-15432563 7.8e-05 88_[+3]_24 chr3L:3096374-3096494 7.8e-05 4_[+3]_108 chrX:771836-771956 7.8e-05 19_[+3]_93 chr2L:19508718-19508838 0.00011 56_[+3]_56 chr2R:12633504-12633624 0.00011 102_[+3]_10 chr3R:16190897-16191017 0.00011 71_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SBCAGTGB width=8 seqs=22 chr3L:5926124-5926244 ( 92) CCCAGTGC 1 chr2L:73240-73360 ( 105) GCCAGTGC 1 chr3L:11483327-11483447 ( 113) GCCAGTGC 1 chr3R:10564340-10564460 ( 106) CCCAGTGT 1 chr2R:11601044-11601164 ( 105) CTCAGTGC 1 chr2L:5245751-5245871 ( 100) CGCAGTGC 1 chrX:15599855-15599975 ( 98) CTCAGTGC 1 chr2L:3861554-3861674 ( 102) CGCAGTGC 1 chr3L:10350876-10350996 ( 95) CGCAGTGC 1 chr2L:2162645-2162765 ( 61) GCCAGTGG 1 chr2L:7525431-7525551 ( 39) GCCAGTGT 1 chr3L:13021934-13022054 ( 76) GCCAGTGT 1 chrX:12221688-12221808 ( 106) GCCAGTGT 1 chr2R:23574946-23575066 ( 90) CTCAGTGT 1 chr2R:11095304-11095424 ( 88) CTCAGTGT 1 chr3R:28590660-28590780 ( 8) CGCAGTGG 1 chr2L:15432443-15432563 ( 89) CTCAGTGT 1 chr3L:3096374-3096494 ( 5) CTCAGTGG 1 chrX:771836-771956 ( 20) CTCAGTGG 1 chr2L:19508718-19508838 ( 57) GGCAGTGT 1 chr2R:12633504-12633624 ( 103) GTCAGTGT 1 chr3R:16190897-16191017 ( 72) GTCAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 7.5e+003 -1110 171 114 -1110 -1110 101 30 36 -1110 247 -1110 -1110 167 -1110 -1110 -1110 -1110 -1110 243 -1110 -1110 -1110 -1110 165 -1110 -1110 243 -1110 -1110 101 30 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.5e+003 0.000000 0.590909 0.409091 0.000000 0.000000 0.363636 0.227273 0.409091 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.227273 0.409091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCAGTGB MEME-3 regular expression -------------------------------------------------------------------------------- [CG][TCG]CAGTG[TCG] -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** MOTIF MGCTGSCM MEME-4 width = 8 sites = 14 llr = 141 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6::::::5 pos.-specific C 4:a::5a3 probability G :a::a5:2 matrix T :::a:::: bits 2.5 ** * * 2.2 ** * * 2.0 ** * * 1.7 **** * Relative 1.5 ****** Entropy 1.2 ****** (14.5 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCTGCCA consensus C G C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14956376-14956496 47 2.05e-05 ATGTCAATAT AGCTGCCA TCGTCGATTA chrX:11686369-11686489 11 2.05e-05 tctccctctc AGCTGCCA TGTTTCTCTC chr3R:10696460-10696580 104 2.05e-05 TGGAAAGAAA AGCTGGCA AATAGCTGA chr2R:20641617-20641737 13 2.05e-05 AAAGTACAAT AGCTGGCA AATATCCTTC chr3R:13016285-13016405 105 2.05e-05 AATTTATAAT AGCTGCCA CAACTGCT chr3L:3080777-3080897 75 2.05e-05 AGTGGTGATT AGCTGGCC CAAACTACAA chr2R:11528170-11528290 8 2.05e-05 TCCTATT AGCTGGCC AGAGCGctct chrX:19770240-19770360 6 3.22e-05 GAAAT CGCTGGCA AATCACAAAT chr3L:12529535-12529655 99 3.22e-05 GGCACTAGTT CGCTGCCC GCGACTGTGC chr2R:21571370-21571490 33 3.22e-05 TACTTTTGAG CGCTGGCA ATTTACCTCA chr2L:15643914-15644034 111 3.22e-05 CGGCAGGTGG CGCTGGCC AA chr2R:14136976-14137096 111 3.98e-05 TTATTCCCTA AGCTGCCG GA chr2L:6357107-6357227 39 3.98e-05 ATTGCGTTTC AGCTGCCG GAAGATAGAT chr2R:8655666-8655786 65 4.42e-05 CCACACAGCA CGCTGccg tacccgtacc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14956376-14956496 2e-05 46_[+4]_66 chrX:11686369-11686489 2e-05 10_[+4]_102 chr3R:10696460-10696580 2e-05 103_[+4]_9 chr2R:20641617-20641737 2e-05 12_[+4]_100 chr3R:13016285-13016405 2e-05 104_[+4]_8 chr3L:3080777-3080897 2e-05 74_[+4]_38 chr2R:11528170-11528290 2e-05 7_[+4]_105 chrX:19770240-19770360 3.2e-05 5_[+4]_107 chr3L:12529535-12529655 3.2e-05 98_[+4]_14 chr2R:21571370-21571490 3.2e-05 32_[+4]_80 chr2L:15643914-15644034 3.2e-05 110_[+4]_2 chr2R:14136976-14137096 4e-05 110_[+4]_2 chr2L:6357107-6357227 4e-05 38_[+4]_74 chr2R:8655666-8655786 4.4e-05 64_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MGCTGSCM width=8 seqs=14 chr3L:14956376-14956496 ( 47) AGCTGCCA 1 chrX:11686369-11686489 ( 11) AGCTGCCA 1 chr3R:10696460-10696580 ( 104) AGCTGGCA 1 chr2R:20641617-20641737 ( 13) AGCTGGCA 1 chr3R:13016285-13016405 ( 105) AGCTGCCA 1 chr3L:3080777-3080897 ( 75) AGCTGGCC 1 chr2R:11528170-11528290 ( 8) AGCTGGCC 1 chrX:19770240-19770360 ( 6) CGCTGGCA 1 chr3L:12529535-12529655 ( 99) CGCTGCCC 1 chr2R:21571370-21571490 ( 33) CGCTGGCA 1 chr2L:15643914-15644034 ( 111) CGCTGGCC 1 chr2R:14136976-14137096 ( 111) AGCTGCCG 1 chr2L:6357107-6357227 ( 39) AGCTGCCG 1 chr2R:8655666-8655786 ( 65) CGCTGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8217 E= 1.4e+004 103 98 -1045 -1045 -1045 -1045 243 -1045 -1045 247 -1045 -1045 -1045 -1045 -1045 165 -1045 -1045 243 -1045 -1045 147 143 -1045 -1045 247 -1045 -1045 67 66 21 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.4e+004 0.642857 0.357143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.285714 0.214286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCTGSCM MEME-4 regular expression -------------------------------------------------------------------------------- [AC]GCTG[CG]C[ACG] -------------------------------------------------------------------------------- Time 25.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGCGCS MEME-5 width = 8 sites = 5 llr = 57 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 88:2a:a6 probability G 22a8:a:4 matrix T :::::::: bits 2.5 * *** 2.2 * *** 2.0 * *** 1.7 ******* Relative 1.5 ******** Entropy 1.2 ******** (16.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGGCGCC consensus GG C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12633504-12633624 50 1.23e-06 TCGGGTGTAA CCGGCGCC CATCGATATC chr2R:19413307-19413427 27 2.49e-06 ATCGTCGCCA CCGGCGCG TCAGCGTCAG chr2L:3057957-3058077 96 3.69e-06 GAACACGCGT CCGCCGCC GATCAAACAT chr3R:14748778-14748898 36 6.20e-06 TACATCTAAG CGGGCGCC CTAAGTGCCG chr2R:8649551-8649671 25 1.00e-05 gagagaAACA GCGGCGCG CGCTCGCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12633504-12633624 1.2e-06 49_[+5]_63 chr2R:19413307-19413427 2.5e-06 26_[+5]_86 chr2L:3057957-3058077 3.7e-06 95_[+5]_17 chr3R:14748778-14748898 6.2e-06 35_[+5]_77 chr2R:8649551-8649671 1e-05 24_[+5]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGCGCS width=8 seqs=5 chr2R:12633504-12633624 ( 50) CCGGCGCC 1 chr2R:19413307-19413427 ( 27) CCGGCGCG 1 chr2L:3057957-3058077 ( 96) CCGCCGCC 1 chr3R:14748778-14748898 ( 36) CGGGCGCC 1 chr2R:8649551-8649671 ( 25) GCGGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 2.4e+004 -897 214 11 -897 -897 214 11 -897 -897 -897 243 -897 -897 15 211 -897 -897 247 -897 -897 -897 -897 243 -897 -897 247 -897 -897 -897 173 111 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.4e+004 0.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGCGCS MEME-5 regular expression -------------------------------------------------------------------------------- [CG][CG]G[GC]CGC[CG] -------------------------------------------------------------------------------- Time 32.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3057957-3058077 2.05e-04 95_[+5(3.69e-06)]_17 chr2R:11528170-11528290 4.11e-03 7_[+4(2.05e-05)]_105 chr2R:8655666-8655786 4.63e-02 64_[+4(4.42e-05)]_48 chr3R:16190897-16191017 6.17e-02 120 chr2L:1650140-1650260 8.42e-01 120 chrX:10463246-10463366 8.47e-03 120 chr2L:7158943-7159063 8.71e-01 120 chr3R:16664269-16664389 4.12e-04 66_[+2(3.42e-06)]_46 chrX:8677522-8677642 9.43e-01 120 chrX:16650582-16650702 8.80e-01 120 chr3R:20833906-20834026 2.06e-01 120 chr2R:11507529-11507649 3.40e-01 120 chr3L:17005107-17005227 4.16e-03 120 chrX:7703082-7703202 1.00e+00 120 chr3L:721124-721244 1.00e+00 120 chr2R:11410861-11410981 6.60e-01 120 chrX:5516177-5516297 1.00e+00 120 chrX:4322802-4322922 2.66e-01 120 chr3R:14311148-14311268 1.00e+00 120 chr2L:15643914-15644034 4.60e-06 30_[+1(3.77e-06)]_72_[+4(3.22e-05)]_\ 2 chr3R:8072729-8072849 1.56e-01 106_[+4(9.77e-05)]_6 chr2R:8649551-8649671 8.88e-04 24_[+5(1.00e-05)]_88 chrX:13630391-13630511 9.99e-01 120 chr2L:18564699-18564819 4.20e-04 86_[+2(5.64e-06)]_26 chr3L:20447818-20447938 3.25e-01 120 chr3R:9127342-9127462 5.28e-01 120 chr2R:19421627-19421747 9.66e-01 120 chr2L:18648372-18648492 9.80e-01 120 chrX:12221688-12221808 1.00e-02 105_[+3(4.90e-05)]_7 chr2R:14485430-14485550 9.70e-01 120 chrX:4590614-4590734 9.96e-01 120 chr2L:10321400-10321520 5.48e-01 120 chrX:15027007-15027127 6.29e-02 120 chr3R:9888865-9888985 7.36e-01 120 chr2R:17548716-17548836 6.56e-02 120 chr2R:17723289-17723409 9.98e-01 120 chr2L:6357107-6357227 4.04e-03 38_[+4(3.98e-05)]_74 chr3R:24320235-24320355 9.81e-01 120 chr2R:21714289-21714409 5.03e-02 120 chrX:4936641-4936761 9.89e-01 120 chr2R:21514493-21514613 8.35e-01 120 chr3R:15676334-15676454 6.81e-01 120 chr3L:3851961-3852081 7.43e-01 120 chr3L:3080777-3080897 8.59e-05 35_[+1(5.12e-05)]_31_[+4(2.05e-05)]_\ 38 chrX:771836-771956 2.14e-01 19_[+3(7.76e-05)]_93 chr3R:10388524-10388644 5.75e-01 120 chr3L:10866697-10866817 1.83e-03 15_[+2(2.89e-05)]_97 chr3L:2468580-2468700 4.70e-01 120 chr3L:16279913-16280033 4.65e-02 [+2(2.03e-05)]_112 chrX:11550202-11550322 1.00e+00 120 chr3R:31726056-31726176 6.44e-01 120 chr3R:7082128-7082248 9.95e-01 120 chrX:6615570-6615690 4.10e-01 120 chrX:17582784-17582904 9.53e-01 120 chr2R:13261879-13261999 9.51e-01 120 chr2L:20079041-20079161 5.96e-02 120 chr3R:5517611-5517731 5.49e-03 79_[+2(2.46e-05)]_33 chr2L:108079-108199 1.26e-03 101_[+2(2.03e-05)]_11 chr2L:7376310-7376430 6.45e-01 120 chr2R:18698848-18698968 9.81e-01 120 chrX:5086261-5086381 3.81e-02 98_[+1(4.49e-05)]_14 chr3R:5065218-5065338 9.08e-02 120 chr2L:19059046-19059166 1.00e+00 120 chrX:7086733-7086853 1.37e-01 110_[+1(7.04e-05)]_2 chr3L:7368001-7368121 2.80e-01 120 chr4:59109-59229 5.78e-01 120 chr2L:5805458-5805578 7.59e-06 6_[+1(9.77e-06)]_17_[+2(1.07e-05)]_\ 81 chrX:11715229-11715349 9.22e-01 120 chr3R:23735147-23735267 8.70e-01 120 chr3L:3096374-3096494 3.81e-02 4_[+3(7.76e-05)]_108 chr3L:20276804-20276924 3.84e-01 120 chrX:16105848-16105968 1.75e-01 120 chr2L:14024804-14024924 9.49e-01 120 chr2L:15432443-15432563 4.71e-01 88_[+3(7.76e-05)]_24 chr3R:16748698-16748818 6.45e-05 52_[+1(1.35e-05)]_60 chrX:17176693-17176813 9.38e-01 120 chr2R:12547901-12548021 3.38e-02 120 chr3L:13021934-13022054 9.28e-03 75_[+3(4.90e-05)]_37 chr3R:6667385-6667505 8.30e-01 120 chr2L:14160974-14161094 1.70e-03 66_[+1(3.77e-06)]_46 chr3R:14748778-14748898 1.06e-03 35_[+5(6.20e-06)]_77 chr2L:18328832-18328952 1.25e-01 120 chr4:1219051-1219171 8.97e-01 120 chr2L:7525431-7525551 2.34e-02 38_[+3(4.90e-05)]_74 chr2L:6723064-6723184 1.78e-03 108_[+2(3.73e-05)]_4 chr3R:14708912-14709032 2.30e-01 120 chr3R:13016285-13016405 1.02e-03 104_[+4(2.05e-05)]_8 chr3L:19847115-19847235 3.20e-01 120 chr2L:2162645-2162765 2.36e-05 28_[+2(3.61e-05)]_24_[+3(4.90e-05)]_\ 52 chrX:1370139-1370259 9.97e-02 120 chr3L:8584221-8584341 1.84e-01 120 chr2R:15754397-15754517 7.23e-01 120 chr3R:29690563-29690683 1.00e+00 120 chr2R:20641617-20641737 2.75e-05 12_[+4(2.05e-05)]_92_[+2(5.64e-06)] chr3L:11540439-11540559 7.59e-02 120 chr3R:26892865-26892985 9.07e-01 120 chr2L:3533264-3533384 7.06e-01 120 chr2R:12035146-12035266 9.36e-01 120 chr2L:858207-858327 2.09e-01 120 chr3L:3875102-3875222 6.25e-01 120 chr3R:26121877-26121997 8.42e-01 120 chr3L:20630805-20630925 2.80e-01 120 chr3L:7861093-7861213 9.97e-01 120 chr2L:2494625-2494745 2.08e-01 120 chr2L:3856372-3856492 8.50e-01 120 chr3L:5926124-5926244 8.98e-03 91_[+3(3.69e-06)]_21 chr3R:25515491-25515611 2.74e-01 120 chr4:1146522-1146642 1.94e-01 120 chr2R:11792763-11792883 1.50e-01 120 chr2L:7984976-7985096 9.70e-01 120 chr2R:19146156-19146276 9.99e-01 120 chr2L:18505659-18505779 2.17e-01 120 chr3L:11273760-11273880 9.66e-01 120 chr2R:14136976-14137096 3.04e-02 110_[+4(3.98e-05)]_2 chr2L:10516849-10516969 5.24e-01 120 chr3R:8171643-8171763 9.96e-01 120 chr2R:21183219-21183339 3.51e-01 120 chr2R:21527429-21527549 6.63e-01 120 chr3L:10745774-10745894 9.62e-01 120 chr3L:8440903-8441023 9.09e-01 120 chr2L:16520086-16520206 4.85e-01 120 chr3R:23028640-23028760 1.20e-01 120 chr3R:16704420-16704540 9.61e-01 120 chr2R:19413307-19413427 6.24e-05 18_[+1(7.04e-05)]_[+5(2.49e-06)]_86 chrX:20507873-20507993 2.07e-01 120 chr3L:21130974-21131094 2.32e-01 120 chrX:20631314-20631434 4.15e-01 120 chr2L:8554338-8554458 6.96e-01 120 chr2R:11628119-11628239 3.77e-08 62_[+2(9.07e-05)]_28_[+5(3.69e-06)]_\ 3_[+2(5.64e-06)]_3 chr2R:17796750-17796870 2.43e-01 120 chrX:7015073-7015193 9.37e-01 120 chr3L:11534016-11534136 7.34e-01 120 chr3L:11429883-11430003 9.84e-01 120 chr2L:8572992-8573112 8.22e-01 120 chr2R:20906673-20906793 5.42e-06 82_[+1(3.77e-06)]_30 chr2L:16703825-16703945 4.08e-01 120 chr2L:6700761-6700881 7.59e-01 120 chr2L:6968299-6968419 4.93e-01 120 chr3L:10350876-10350996 8.79e-02 94_[+3(2.80e-05)]_18 chr3R:23888821-23888941 3.90e-01 120 chr2L:5981015-5981135 5.07e-02 120 chr3R:14894548-14894668 8.60e-01 120 chr3R:4846928-4847048 4.22e-01 120 chr2R:21571370-21571490 1.87e-02 32_[+4(3.22e-05)]_51_[+4(6.49e-05)]_\ 21 chr2L:16251920-16252040 9.70e-01 120 chr2R:20312572-20312692 9.36e-01 120 chr2R:15240293-15240413 5.07e-01 120 chr3L:5987857-5987977 9.03e-06 57_[+5(1.25e-05)]_55 chr2L:10276905-10277025 2.88e-02 26_[+1(7.04e-05)]_86 chr3R:28590660-28590780 1.70e-02 7_[+3(7.76e-05)]_105 chrX:11622215-11622335 7.97e-01 120 chr2L:488297-488417 9.94e-01 120 chr3R:30532092-30532212 9.98e-01 120 chrX:18635426-18635546 6.08e-02 120 chr3L:12684828-12684948 5.67e-01 120 chr2R:10096797-10096917 1.03e-01 67_[+4(9.77e-05)]_45 chr2L:16317898-16318018 7.87e-01 120 chr2L:3861554-3861674 1.68e-01 101_[+3(2.80e-05)]_11 chr2L:3852307-3852427 9.93e-01 120 chr3L:8399168-8399288 9.53e-01 120 chrX:16158705-16158825 9.79e-01 120 chr2L:10143433-10143553 4.87e-01 120 chr3L:12529535-12529655 6.61e-03 98_[+4(3.22e-05)]_14 chr3R:19831129-19831249 8.96e-01 120 chrX:15599855-15599975 3.62e-02 97_[+3(2.80e-05)]_15 chr3R:23333820-23333940 9.99e-01 120 chr2R:11275933-11276053 9.52e-01 120 chr2R:14574258-14574378 1.85e-01 120 chr2L:22536564-22536684 2.81e-01 120 chr2L:222293-222413 5.49e-05 66_[+2(2.03e-05)]_46 chrX:5883518-5883638 3.63e-03 67_[+1(9.77e-06)]_45 chrX:1517739-1517859 4.49e-01 120 chrX:10515448-10515568 9.64e-01 120 chr2R:8064452-8064572 7.01e-01 120 chr3L:5974694-5974814 5.99e-01 120 chr3L:21954631-21954751 3.80e-01 120 chrX:20394205-20394325 1.88e-01 120 chr3R:10696460-10696580 1.33e-01 103_[+4(2.05e-05)]_9 chr2R:11095304-11095424 3.61e-02 87_[+3(7.76e-05)]_25 chrX:15844229-15844349 2.37e-01 120 chr3R:4319584-4319704 9.40e-02 120 chr4:406904-407024 6.79e-01 120 chr2R:17478628-17478748 6.49e-01 120 chr2L:3042236-3042356 3.32e-01 120 chr2L:5245751-5245871 1.96e-01 99_[+3(2.80e-05)]_13 chr3L:12053823-12053943 9.98e-01 120 chr2R:12633504-12633624 5.36e-05 49_[+5(1.23e-06)]_63 chr4:56274-56394 3.20e-01 120 chrX:2318457-2318577 8.78e-01 120 chr3L:14555255-14555375 5.17e-01 120 chr3R:30413957-30414077 8.15e-01 120 chr2R:11359171-11359291 1.46e-01 120 chr2R:11601044-11601164 4.34e-02 104_[+3(2.80e-05)]_8 chr2R:6630653-6630773 6.75e-01 120 chrX:19770240-19770360 1.15e-01 5_[+4(3.22e-05)]_107 chr3L:9899205-9899325 2.38e-01 120 chrX:11686369-11686489 1.23e-04 10_[+4(2.05e-05)]_40_[+1(2.00e-05)]_\ [+1(2.00e-05)]_46 chr3R:10564340-10564460 4.90e-02 105_[+3(2.80e-05)]_7 chr3R:28631900-28632020 5.23e-02 120 chr2L:19191967-19192087 1.50e-01 120 chr3L:3767946-3768066 4.49e-04 26_[+1(3.77e-06)]_12_[+1(9.77e-06)]_\ 66 chr3L:11483327-11483447 5.28e-03 112_[+3(7.46e-06)] chr2L:6830352-6830472 9.94e-01 120 chr2L:19508718-19508838 1.92e-04 72_[+1(2.22e-05)]_40 chr3R:9220160-9220280 9.30e-02 120 chr2R:8082800-8082920 2.07e-03 91_[+1(2.80e-05)]_21 chrX:16773012-16773132 6.85e-01 120 chrX:20519208-20519328 3.24e-01 120 chr2L:12424710-12424830 2.40e-03 120 chr3L:16571560-16571680 8.29e-01 120 chr3L:6816308-6816428 2.38e-01 120 chr3L:3300411-3300531 6.94e-01 120 chr3R:5319180-5319300 9.03e-02 120 chr3R:19848014-19848134 4.11e-01 120 chr3L:1029746-1029866 5.94e-01 120 chrX:3085977-3086097 3.84e-04 47_[+2(2.17e-06)]_65 chr3R:26654733-26654853 2.33e-01 120 chr2R:16837666-16837786 9.98e-01 120 chr2L:5425504-5425624 9.92e-01 120 chrX:18869556-18869676 6.84e-01 120 chr3R:29039733-29039853 6.32e-01 120 chr2L:14545467-14545587 3.44e-02 120 chr3R:31395333-31395453 1.42e-03 17_[+2(1.07e-05)]_95 chrX:4617004-4617124 9.97e-01 120 chrX:5672563-5672683 2.61e-01 120 chr3R:17400780-17400900 8.53e-01 120 chr3L:14956376-14956496 5.07e-02 46_[+4(2.05e-05)]_66 chrX:17297360-17297480 5.62e-01 120 chr3R:6468208-6468328 6.83e-01 120 chrX:526647-526767 6.19e-01 120 chrX:12469947-12470067 1.00e+00 120 chr2R:8615261-8615381 8.01e-03 33_[+2(8.57e-05)]_79 chr2L:7641768-7641888 2.34e-03 1_[+1(3.45e-05)]_111 chr3R:22596616-22596736 8.98e-02 120 chr3R:10079651-10079771 1.15e-02 19_[+1(8.43e-05)]_93 chr2R:19205335-19205455 6.03e-01 120 chr2L:20650003-20650123 8.92e-01 120 chr2R:11636062-11636182 9.13e-01 120 chr2R:23574946-23575066 1.10e-01 89_[+3(7.76e-05)]_23 chrX:21242022-21242142 8.80e-03 39_[+4(9.77e-05)]_18_[+1(9.55e-05)]_\ 47 chr2L:7632922-7633042 5.21e-02 46_[+1(4.49e-05)]_66 chr2L:73240-73360 1.06e-05 3_[+1(3.77e-06)]_58_[+1(3.77e-06)]_\ 27_[+3(7.46e-06)]_8 chr3L:5881620-5881740 1.00e+00 120 chr2R:13587143-13587263 3.45e-01 120 chr3L:16157977-16158097 8.84e-01 120 chr2R:22165540-22165660 9.94e-01 120 chr2R:7031151-7031271 4.63e-03 77_[+1(7.04e-05)]_35 chr2L:2882952-2883072 1.16e-05 1_[+2(1.44e-05)]_[+1(2.00e-05)]_65_\ [+4(6.49e-05)]_30 chr2R:20067257-20067377 9.57e-01 120 chr2R:16608428-16608548 4.39e-03 81_[+2(2.46e-05)]_31 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************