******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ems.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:19268812-19268932 1.0000 120 chr3L:8604460-8604580 1.0000 120 chr3R:15347852-15347972 1.0000 120 chr2L:5972267-5972387 1.0000 120 chr3L:3760812-3760932 1.0000 120 chr2R:21091933-21092053 1.0000 120 chr2L:7031597-7031717 1.0000 120 chr2R:22368078-22368198 1.0000 120 chr3R:10775367-10775487 1.0000 120 chr2R:20319576-20319696 1.0000 120 chr2L:897267-897387 1.0000 120 chrX:10067684-10067804 1.0000 120 chr2L:7037964-7038084 1.0000 120 chr3R:16655778-16655898 1.0000 120 chr3R:18243749-18243869 1.0000 120 chr2L:6794985-6795105 1.0000 120 chr3R:18914114-18914234 1.0000 120 chrX:13253147-13253267 1.0000 120 chr3L:6220290-6220410 1.0000 120 chr2R:23003261-23003381 1.0000 120 chr3R:12083698-12083818 1.0000 120 chr3L:721190-721310 1.0000 120 chr3R:4654667-4654787 1.0000 120 chr3R:23348028-23348148 1.0000 120 chr3L:2782121-2782241 1.0000 120 chr3L:3543782-3543902 1.0000 120 chr2R:12586843-12586963 1.0000 120 chr3L:20389100-20389220 1.0000 120 chr3R:26172150-26172270 1.0000 120 chr3R:30789568-30789688 1.0000 120 chr3R:21214892-21215012 1.0000 120 chr3L:11708593-11708713 1.0000 120 chr3R:29131019-29131139 1.0000 120 chr3R:20555104-20555224 1.0000 120 chrX:8671440-8671560 1.0000 120 chr2L:1427921-1428041 1.0000 120 chr2R:13205469-13205589 1.0000 120 chr3R:5685750-5685870 1.0000 120 chr4:959951-960071 1.0000 120 chr2R:19469008-19469128 1.0000 120 chr2L:5055091-5055211 1.0000 120 chr3L:7367986-7368106 1.0000 120 chr3R:22025448-22025568 1.0000 120 chr3L:18791564-18791684 1.0000 120 chr2R:16856788-16856908 1.0000 120 chrX:10587558-10587678 1.0000 120 chr3L:5796768-5796888 1.0000 120 chr2L:3570107-3570227 1.0000 120 chr2R:17205954-17206074 1.0000 120 chrX:1859031-1859151 1.0000 120 chr3L:4413179-4413299 1.0000 120 chr3L:14789773-14789893 1.0000 120 chr3R:21118902-21119022 1.0000 120 chr3R:10893568-10893688 1.0000 120 chr2L:4224238-4224358 1.0000 120 chr3R:18998487-18998607 1.0000 120 chr3L:6609309-6609429 1.0000 120 chr3R:13644781-13644901 1.0000 120 chr2L:1177586-1177706 1.0000 120 chrX:12241199-12241319 1.0000 120 chr3R:30200167-30200287 1.0000 120 chrX:5084932-5085052 1.0000 120 chrX:20507860-20507980 1.0000 120 chr3R:27273619-27273739 1.0000 120 chr2L:8239807-8239927 1.0000 120 chr3R:10411855-10411975 1.0000 120 chr3L:5789902-5790022 1.0000 120 chr3R:23760558-23760678 1.0000 120 chrX:12547719-12547839 1.0000 120 chr2R:10096791-10096911 1.0000 120 chr2L:2862241-2862361 1.0000 120 chr2R:21910009-21910129 1.0000 120 chr3R:10696487-10696607 1.0000 120 chrX:10825418-10825538 1.0000 120 chrX:8900265-8900385 1.0000 120 chrX:8273927-8274047 1.0000 120 chr2L:2731505-2731625 1.0000 120 chr3R:18274487-18274607 1.0000 120 chr2R:16170825-16170945 1.0000 120 chrX:8574859-8574979 1.0000 120 chr3R:7492167-7492287 1.0000 120 chr3R:7082069-7082189 1.0000 120 chrX:8601294-8601414 1.0000 120 chrX:22449394-22449514 1.0000 120 chrX:771819-771939 1.0000 120 chrX:9120952-9121072 1.0000 120 chr2R:7939098-7939218 1.0000 120 chrX:14169233-14169353 1.0000 120 chr2R:17564749-17564869 1.0000 120 chr3R:24625568-24625688 1.0000 120 chr3L:5554505-5554625 1.0000 120 chrX:11715408-11715528 1.0000 120 chrX:10387784-10387904 1.0000 120 chr3L:21136065-21136185 1.0000 120 chr3R:16996209-16996329 1.0000 120 chr2R:6984300-6984420 1.0000 120 chr3R:24753649-24753769 1.0000 120 chr2R:8734563-8734683 1.0000 120 chr3L:11334155-11334275 1.0000 120 chr2L:203711-203831 1.0000 120 chr3L:18898192-18898312 1.0000 120 chr4:69367-69487 1.0000 120 chr2L:21260950-21261070 1.0000 120 chr3L:9972686-9972806 1.0000 120 chr2R:16850296-16850416 1.0000 120 chr3R:10888654-10888774 1.0000 120 chrX:12631460-12631580 1.0000 120 chr3R:15804122-15804242 1.0000 120 chr3L:14969442-14969562 1.0000 120 chr2L:9938070-9938190 1.0000 120 chr2L:1150686-1150806 1.0000 120 chr2R:8900218-8900338 1.0000 120 chr2R:11809494-11809614 1.0000 120 chr3R:5856358-5856478 1.0000 120 chr2L:7027127-7027247 1.0000 120 chr3R:21187003-21187123 1.0000 120 chr2R:16202889-16203009 1.0000 120 chrX:1380441-1380561 1.0000 120 chrX:3019669-3019789 1.0000 120 chr3L:9762265-9762385 1.0000 120 chrX:11854862-11854982 1.0000 120 chr2L:1614219-1614339 1.0000 120 chr2R:16011516-16011636 1.0000 120 chr3R:21273754-21273874 1.0000 120 chr3R:17002314-17002434 1.0000 120 chr3L:1139545-1139665 1.0000 120 chr3R:21112538-21112658 1.0000 120 chr3L:14776114-14776234 1.0000 120 chr2R:9388576-9388696 1.0000 120 chr3L:8440927-8441047 1.0000 120 chrX:19665933-19666053 1.0000 120 chr3R:8354493-8354613 1.0000 120 chr3R:12017023-12017143 1.0000 120 chr3L:5604053-5604173 1.0000 120 chr3R:9759542-9759662 1.0000 120 chr2L:19059138-19059258 1.0000 120 chr3R:14657231-14657351 1.0000 120 chr3R:22039582-22039702 1.0000 120 chr3R:26230175-26230295 1.0000 120 chr2R:24657181-24657301 1.0000 120 chr2R:20587412-20587532 1.0000 120 chrX:10573629-10573749 1.0000 120 chr2L:20950909-20951029 1.0000 120 chr3L:21821847-21821967 1.0000 120 chr2R:25032014-25032134 1.0000 120 chrX:23013358-23013478 1.0000 120 chr3R:29039713-29039833 1.0000 120 chr3R:11947180-11947300 1.0000 120 chr2L:19140949-19141069 1.0000 120 chr2R:13055019-13055139 1.0000 120 chr2L:13219978-13220098 1.0000 120 chr3R:31134146-31134266 1.0000 120 chr2R:9681788-9681908 1.0000 120 chr3L:4292242-4292362 1.0000 120 chr2R:13008297-13008417 1.0000 120 chr3L:16571508-16571628 1.0000 120 chr3R:30015192-30015312 1.0000 120 chrX:15076125-15076245 1.0000 120 chr3R:5217346-5217466 1.0000 120 chr3L:21196713-21196833 1.0000 120 chrX:14602691-14602811 1.0000 120 chr3R:24206889-24207009 1.0000 120 chr3R:26654716-26654836 1.0000 120 chr2L:4459702-4459822 1.0000 120 chr2L:19517485-19517605 1.0000 120 chrX:1517635-1517755 1.0000 120 chrX:16782170-16782290 1.0000 120 chrX:13137200-13137320 1.0000 120 chr3R:29591581-29591701 1.0000 120 chr2L:20918823-20918943 1.0000 120 chr3R:15472846-15472966 1.0000 120 chr3L:14545513-14545633 1.0000 120 chrX:8561614-8561734 1.0000 120 chr3L:9402352-9402472 1.0000 120 chr3R:11967627-11967747 1.0000 120 chr3R:21499624-21499744 1.0000 120 chr3L:6743139-6743259 1.0000 120 chr3R:23157898-23158018 1.0000 120 chr2R:17478508-17478628 1.0000 120 chr3L:12037871-12037991 1.0000 120 chr3L:21509641-21509761 1.0000 120 chrX:17330421-17330541 1.0000 120 chr3R:20312977-20313097 1.0000 120 chr3L:6606001-6606121 1.0000 120 chr2R:7012087-7012207 1.0000 120 chr3R:31793814-31793934 1.0000 120 chr2R:22806982-22807102 1.0000 120 chr2R:7474303-7474423 1.0000 120 chr2R:20274347-20274467 1.0000 120 chr3R:22421045-22421165 1.0000 120 chr3R:13812825-13812945 1.0000 120 chr3L:361383-361503 1.0000 120 chr2R:7525688-7525808 1.0000 120 chr2R:23666844-23666964 1.0000 120 chrX:2536241-2536361 1.0000 120 chrX:7001240-7001360 1.0000 120 chr2L:16647913-16648033 1.0000 120 chr3L:20471104-20471224 1.0000 120 chr3L:6264576-6264696 1.0000 120 chr3L:11820096-11820216 1.0000 120 chr2R:21535574-21535694 1.0000 120 chr3L:13189354-13189474 1.0000 120 chr3R:17680903-17681023 1.0000 120 chrX:18370811-18370931 1.0000 120 chr3L:5152456-5152576 1.0000 120 chr2R:10066592-10066712 1.0000 120 chr3R:23943026-23943146 1.0000 120 chr3L:18784725-18784845 1.0000 120 chrX:20257390-20257510 1.0000 120 chr3L:15563013-15563133 1.0000 120 chr2L:20945389-20945509 1.0000 120 chr3R:16431801-16431921 1.0000 120 chrX:6741311-6741431 1.0000 120 chr2L:8488848-8488968 1.0000 120 chr2L:20881489-20881609 1.0000 120 chr2L:6339663-6339783 1.0000 120 chr2L:10468545-10468665 1.0000 120 chr3R:10140342-10140462 1.0000 120 chr3R:14741469-14741589 1.0000 120 chr2R:11738657-11738777 1.0000 120 chr2L:3042247-3042367 1.0000 120 chr3R:23028667-23028787 1.0000 120 chr2R:18140694-18140814 1.0000 120 chr3R:21111274-21111394 1.0000 120 chr3L:16615448-16615568 1.0000 120 chr2R:18433855-18433975 1.0000 120 chr3L:10899205-10899325 1.0000 120 chrX:8892686-8892806 1.0000 120 chr3L:12803804-12803924 1.0000 120 chr2R:22374991-22375111 1.0000 120 chr2R:8913987-8914107 1.0000 120 chr3R:4220934-4221054 1.0000 120 chrX:12454549-12454669 1.0000 120 chrX:12004121-12004241 1.0000 120 chr2L:11829362-11829482 1.0000 120 chr3L:21841318-21841438 1.0000 120 chr3L:7348173-7348293 1.0000 120 chr2L:16703776-16703896 1.0000 120 chr3R:10882217-10882337 1.0000 120 chrX:10775821-10775941 1.0000 120 chrX:12466641-12466761 1.0000 120 chr2L:10698130-10698250 1.0000 120 chr2L:522906-523026 1.0000 120 chrX:1052797-1052917 1.0000 120 chr2L:1108470-1108590 1.0000 120 chr2R:24159286-24159406 1.0000 120 chr3L:9847615-9847735 1.0000 120 chrX:6340065-6340185 1.0000 120 chr3L:11350987-11351107 1.0000 120 chr3R:5251718-5251838 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ems/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ems.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.191 G 0.192 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.191 G 0.192 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCKGSCAV MEME-1 width = 8 sites = 40 llr = 350 E-value = 2.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2:::a3 pos.-specific C :7::6a:3 probability G a:3a4::5 matrix T :35::::: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** Relative 1.4 * **** Entropy 1.2 ** **** (12.6 bits) 1.0 ** **** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCAG consensus TG G A sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24159286-24159406 105 7.60e-06 AGCGAGCAGT GCTGCCAG ACTGTCGG chr2L:1614219-1614339 11 7.60e-06 AGTGTATAGT GCTGCCAG CTATTTGCAT chr3L:21136065-21136185 73 7.60e-06 TATTGGCAGT GCTGCCAG CTGCTATAGC chrX:8900265-8900385 19 7.60e-06 TGTCCGCAGG GCTGCCAG ATCGTCGAGC chr3L:16615448-16615568 67 1.52e-05 CGCATTGCTG GCGGGCAG TGTTGTAAAG chr3R:21499624-21499744 22 1.52e-05 CTGCCCATCG GCGGGCAG AGCGAAACCT chr3L:21196713-21196833 79 1.52e-05 CCAAACACCA GCTGGCAG CCATTCGGAG chrX:19665933-19666053 84 1.52e-05 CTGGGCCCTC GCGGGCAG GGGCCGCGTT chrX:22449394-22449514 39 1.52e-05 TTCATTCAGA GCGGGCAG CATAGTGGGG chr3L:18784725-18784845 38 2.28e-05 tttcatacgg gcggccac cccttttctt chr3L:361383-361503 89 2.28e-05 TGCAAACACC GCTGCCAC ACTGTGTACA chrX:18370811-18370931 61 2.75e-05 TGCTCATTCC GCAGCCAG GGTCACACTT chr3L:6606001-6606121 84 2.75e-05 GCAATTTCCA GCAGCCAG CTTTTGGCAG chr3L:11350987-11351107 30 4.72e-05 GTTTCCCAGG GCTGCCAA ATCAGATGGT chr3R:10140342-10140462 45 4.72e-05 TCACACAGTC GCGGCCAA GGAGATAACA chr2R:7525688-7525808 70 4.72e-05 TCCGGCTTGG GCTGCCAA CCATAAGAGA chrX:1380441-1380561 89 4.72e-05 TTGCCACCTC GCGGGCAC TGAAACCACT chr2L:1177586-1177706 62 4.72e-05 ACAACTGTTA GCTGGCAC TTGGTAGCCC chr3R:5685750-5685870 58 4.72e-05 CTTCCCAGTG GCTGGCAC TCGCAGAAGA chr2L:11829362-11829482 49 5.19e-05 CCCAGGCATT GCAGGCAG TACGGTCTTA chr3R:5217346-5217466 100 5.19e-05 CGGTGTGACC GCAGGCAG GATTGCGCAG chr2R:22374991-22375111 42 6.42e-05 CTCGATTACT GTTGCCAG CCCTAGCATA chr3L:9402352-9402472 67 6.42e-05 TGGGATTTTG GTGGCCAG ACAGTGTGGC chr2R:6984300-6984420 87 6.42e-05 AGTACAGTCT GTGGCCAG TGTTTATGTA chrX:11715408-11715528 84 6.42e-05 TGTTGTGCCA GTTGCCAG CGACAGCGGC chr2R:7939098-7939218 48 6.42e-05 GCCTGGCAGG GTTGCCAG CTCACTGCAG chr2L:1150686-1150806 100 8.11e-05 TATCGTTATC GCAGCCAC CTATCGTTTA chr3R:10696487-10696607 78 8.11e-05 GGAAAGAAAA GCTGGCAA ATAGCTGACC chr3R:10893568-10893688 57 8.11e-05 AAGTGAAATG GCTGGCAA CGCTAGCATG chr3L:11708593-11708713 36 8.11e-05 AATATACCAC GCAGCCAC GGAGTTGTAA chr2R:16850296-16850416 56 9.35e-05 CATAAAACGA GTTGGCAG GGATGTATCG chr2R:16856788-16856908 42 1.06e-04 GGCAGAAACG GCAGCCAA AGAAAATGCC chr2L:7037964-7038084 59 1.06e-04 GTGTTGGGCA GCAGCCAA TCGAAATCTG chr3R:4220934-4221054 105 1.18e-04 TTATTTTTTT GTGGCCAC GGCGCTAC chr3R:17002314-17002434 65 1.18e-04 TCGTTGGACT GTTGCCAC CGCCATCGAT chr3L:20471104-20471224 26 1.33e-04 TATTTGTGTG GCAGGCAA GGAAAAGAAA chr2R:16202889-16203009 36 1.65e-04 AGCGATCAGT GTTGCCAA TTTAGCTTTC chr3R:22025448-22025568 11 1.65e-04 TAACGCTCCA GTGGCCAA ACTCGAATCT chrX:13253147-13253267 29 1.65e-04 CACTTCCACA GTGGGCAC TCAGTATGAC chrX:5084932-5085052 95 2.00e-04 GACAATTGAC GTTGGCAA AAATGTAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24159286-24159406 7.6e-06 104_[+1]_8 chr2L:1614219-1614339 7.6e-06 10_[+1]_102 chr3L:21136065-21136185 7.6e-06 72_[+1]_40 chrX:8900265-8900385 7.6e-06 18_[+1]_94 chr3L:16615448-16615568 1.5e-05 66_[+1]_46 chr3R:21499624-21499744 1.5e-05 21_[+1]_91 chr3L:21196713-21196833 1.5e-05 78_[+1]_34 chrX:19665933-19666053 1.5e-05 83_[+1]_29 chrX:22449394-22449514 1.5e-05 38_[+1]_74 chr3L:18784725-18784845 2.3e-05 37_[+1]_75 chr3L:361383-361503 2.3e-05 88_[+1]_24 chrX:18370811-18370931 2.7e-05 60_[+1]_52 chr3L:6606001-6606121 2.7e-05 83_[+1]_29 chr3L:11350987-11351107 4.7e-05 29_[+1]_83 chr3R:10140342-10140462 4.7e-05 44_[+1]_68 chr2R:7525688-7525808 4.7e-05 69_[+1]_43 chrX:1380441-1380561 4.7e-05 88_[+1]_24 chr2L:1177586-1177706 4.7e-05 61_[+1]_51 chr3R:5685750-5685870 4.7e-05 57_[+1]_55 chr2L:11829362-11829482 5.2e-05 48_[+1]_64 chr3R:5217346-5217466 5.2e-05 99_[+1]_13 chr2R:22374991-22375111 6.4e-05 41_[+1]_71 chr3L:9402352-9402472 6.4e-05 66_[+1]_46 chr2R:6984300-6984420 6.4e-05 86_[+1]_26 chrX:11715408-11715528 6.4e-05 83_[+1]_29 chr2R:7939098-7939218 6.4e-05 47_[+1]_65 chr2L:1150686-1150806 8.1e-05 99_[+1]_13 chr3R:10696487-10696607 8.1e-05 77_[+1]_35 chr3R:10893568-10893688 8.1e-05 56_[+1]_56 chr3L:11708593-11708713 8.1e-05 35_[+1]_77 chr2R:16850296-16850416 9.3e-05 55_[+1]_57 chr2R:16856788-16856908 0.00011 41_[+1]_71 chr2L:7037964-7038084 0.00011 58_[+1]_54 chr3R:4220934-4221054 0.00012 104_[+1]_8 chr3R:17002314-17002434 0.00012 64_[+1]_48 chr3L:20471104-20471224 0.00013 25_[+1]_87 chr2R:16202889-16203009 0.00016 35_[+1]_77 chr3R:22025448-22025568 0.00016 10_[+1]_102 chrX:13253147-13253267 0.00016 28_[+1]_84 chrX:5084932-5085052 0.0002 94_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKGSCAV width=8 seqs=40 chr2R:24159286-24159406 ( 105) GCTGCCAG 1 chr2L:1614219-1614339 ( 11) GCTGCCAG 1 chr3L:21136065-21136185 ( 73) GCTGCCAG 1 chrX:8900265-8900385 ( 19) GCTGCCAG 1 chr3L:16615448-16615568 ( 67) GCGGGCAG 1 chr3R:21499624-21499744 ( 22) GCGGGCAG 1 chr3L:21196713-21196833 ( 79) GCTGGCAG 1 chrX:19665933-19666053 ( 84) GCGGGCAG 1 chrX:22449394-22449514 ( 39) GCGGGCAG 1 chr3L:18784725-18784845 ( 38) GCGGCCAC 1 chr3L:361383-361503 ( 89) GCTGCCAC 1 chrX:18370811-18370931 ( 61) GCAGCCAG 1 chr3L:6606001-6606121 ( 84) GCAGCCAG 1 chr3L:11350987-11351107 ( 30) GCTGCCAA 1 chr3R:10140342-10140462 ( 45) GCGGCCAA 1 chr2R:7525688-7525808 ( 70) GCTGCCAA 1 chrX:1380441-1380561 ( 89) GCGGGCAC 1 chr2L:1177586-1177706 ( 62) GCTGGCAC 1 chr3R:5685750-5685870 ( 58) GCTGGCAC 1 chr2L:11829362-11829482 ( 49) GCAGGCAG 1 chr3R:5217346-5217466 ( 100) GCAGGCAG 1 chr2R:22374991-22375111 ( 42) GTTGCCAG 1 chr3L:9402352-9402472 ( 67) GTGGCCAG 1 chr2R:6984300-6984420 ( 87) GTGGCCAG 1 chrX:11715408-11715528 ( 84) GTTGCCAG 1 chr2R:7939098-7939218 ( 48) GTTGCCAG 1 chr2L:1150686-1150806 ( 100) GCAGCCAC 1 chr3R:10696487-10696607 ( 78) GCTGGCAA 1 chr3R:10893568-10893688 ( 57) GCTGGCAA 1 chr3L:11708593-11708713 ( 36) GCAGCCAC 1 chr2R:16850296-16850416 ( 56) GTTGGCAG 1 chr2R:16856788-16856908 ( 42) GCAGCCAA 1 chr2L:7037964-7038084 ( 59) GCAGCCAA 1 chr3R:4220934-4221054 ( 105) GTGGCCAC 1 chr3R:17002314-17002434 ( 65) GTTGCCAC 1 chr3L:20471104-20471224 ( 26) GCAGGCAA 1 chr2R:16202889-16203009 ( 36) GTTGCCAA 1 chr3R:22025448-22025568 ( 11) GTGGCCAA 1 chrX:13253147-13253267 ( 29) GTGGGCAC 1 chrX:5084932-5085052 ( 95) GTTGGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 2.9e-006 -1197 -1197 238 -1197 -1197 187 -1197 -5 -45 -1197 64 62 -1197 -1197 238 -1197 -1197 165 106 -1197 -1197 239 -1197 -1197 170 -1197 -1197 -1197 -16 39 131 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 2.9e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.225000 0.000000 0.300000 0.475000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.275000 0.250000 0.475000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGSCAV MEME-1 regular expression -------------------------------------------------------------------------------- G[CT][TGA]G[CG]CA[GAC] -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-2 width = 8 sites = 31 llr = 286 E-value = 1.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:9 pos.-specific C 2::a:::: probability G ::::a::: matrix T 6:a:::a1 bits 2.4 ** 2.1 ** 1.9 ** 1.7 ****** Relative 1.4 ****** Entropy 1.2 ******* (13.3 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5251718-5251838 76 3.16e-05 GCTCGGTAAG TATCGATA GCCTTGGATT chr3L:7348173-7348293 110 3.16e-05 CTCCTAACCC TATCGATA GAA chr3L:21841318-21841438 104 3.16e-05 TGTCCATAGC TATCGATA AGGCGCCAA chr2R:22374991-22375111 58 3.16e-05 AGCCCTAGCA TATCGATA GCACGTAGCG chr3R:23157898-23158018 8 3.16e-05 CGATTGA TATCGATA ATTTTTGTCG chr2R:20587412-20587532 96 3.16e-05 AACCATCATA TATCGATA GTCCAGGTAT chrX:11854862-11854982 101 3.16e-05 TTAAGCAATG TATCGATA TAGCCCACAT chr2R:8900218-8900338 17 3.16e-05 AACGCCAACT TATCGATA CTTTATCGAG chrX:12631460-12631580 109 3.16e-05 ATAAGATTGA TATCGATA ATGC chr2R:16850296-16850416 69 3.16e-05 GGCAGGGATG TATCGATA ACACAAATCA chr2L:203711-203831 60 3.16e-05 AATATCTGGC TATCGATA AGAATGAATA chr3R:24625568-24625688 59 3.16e-05 AGCTAAATGT TATCGATA AGCATTTCAG chr3R:10696487-10696607 15 3.16e-05 AATTCAAGCT TATCGATA AATAAAATAT chr2R:10096791-10096911 111 3.16e-05 TAAAGACCAG TATCGATA GC chr2L:1177586-1177706 97 3.16e-05 ATCGGTCAGT TATCGATA ACTGGCAGTC chr2R:12586843-12586963 51 3.16e-05 AATATTTATA TATCGATA CCGCCAAGGG chr3R:16655778-16655898 34 3.16e-05 catcaatatc tatcgata tcgcagaaaa chr3R:14741469-14741589 108 5.11e-05 TTACCCTATA CATCGATA GTATC chrX:23013358-23013478 78 5.11e-05 CATAGCCTAA CATCGATA TCAATAAAAC chr3L:14776114-14776234 73 5.11e-05 CATTCATTGG CATCGATA CTTTTTAGAA chr3R:17002314-17002434 76 5.11e-05 TTGCCACCGC CATCGATA GTTTTCTTAC chrX:9120952-9121072 80 5.11e-05 TTAAATTTGT CATCGATA TCTAAGTTTA chrX:8892686-8892806 90 8.24e-05 TTTTCAGAAT AATCGATA ATGCTATCGA chr3R:21111274-21111394 87 8.24e-05 CCATTAAGAA AATCGATA AGTATCGCCG chr2R:18140694-18140814 43 8.24e-05 AGTGGGATTT AATCGATA CTTTGTGGGG chr3L:15563013-15563133 75 8.24e-05 GTCGCATAGT AATCGATA AGTTTTAAAT chr2R:10066592-10066712 24 8.24e-05 ATTGGAAAGA AATCGATA AATGTATATT chr3R:21273754-21273874 112 8.24e-05 CGATAGTCGG AATCGATA C chrX:20257390-20257510 103 1.14e-04 TGTCAATCGT TATCGATT AGATTCAAAT chr2R:22806982-22807102 8 1.14e-04 TTGACGA TATCGATT TCTGGACTTA chr3L:14789773-14789893 90 1.14e-04 GGCGCAGTAC TATCGATT GTCCCTGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5251718-5251838 3.2e-05 75_[+2]_37 chr3L:7348173-7348293 3.2e-05 109_[+2]_3 chr3L:21841318-21841438 3.2e-05 103_[+2]_9 chr2R:22374991-22375111 3.2e-05 57_[+2]_55 chr3R:23157898-23158018 3.2e-05 7_[+2]_105 chr2R:20587412-20587532 3.2e-05 95_[+2]_17 chrX:11854862-11854982 3.2e-05 100_[+2]_12 chr2R:8900218-8900338 3.2e-05 16_[+2]_96 chrX:12631460-12631580 3.2e-05 108_[+2]_4 chr2R:16850296-16850416 3.2e-05 68_[+2]_44 chr2L:203711-203831 3.2e-05 59_[+2]_53 chr3R:24625568-24625688 3.2e-05 58_[+2]_54 chr3R:10696487-10696607 3.2e-05 14_[+2]_98 chr2R:10096791-10096911 3.2e-05 110_[+2]_2 chr2L:1177586-1177706 3.2e-05 96_[+2]_16 chr2R:12586843-12586963 3.2e-05 50_[+2]_62 chr3R:16655778-16655898 3.2e-05 33_[+2]_79 chr3R:14741469-14741589 5.1e-05 107_[+2]_5 chrX:23013358-23013478 5.1e-05 77_[+2]_35 chr3L:14776114-14776234 5.1e-05 72_[+2]_40 chr3R:17002314-17002434 5.1e-05 75_[+2]_37 chrX:9120952-9121072 5.1e-05 79_[+2]_33 chrX:8892686-8892806 8.2e-05 89_[+2]_23 chr3R:21111274-21111394 8.2e-05 86_[+2]_26 chr2R:18140694-18140814 8.2e-05 42_[+2]_70 chr3L:15563013-15563133 8.2e-05 74_[+2]_38 chr2R:10066592-10066712 8.2e-05 23_[+2]_89 chr3R:21273754-21273874 8.2e-05 111_[+2]_1 chrX:20257390-20257510 0.00011 102_[+2]_10 chr2R:22806982-22807102 0.00011 7_[+2]_105 chr3L:14789773-14789893 0.00011 89_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=31 chr3R:5251718-5251838 ( 76) TATCGATA 1 chr3L:7348173-7348293 ( 110) TATCGATA 1 chr3L:21841318-21841438 ( 104) TATCGATA 1 chr2R:22374991-22375111 ( 58) TATCGATA 1 chr3R:23157898-23158018 ( 8) TATCGATA 1 chr2R:20587412-20587532 ( 96) TATCGATA 1 chrX:11854862-11854982 ( 101) TATCGATA 1 chr2R:8900218-8900338 ( 17) TATCGATA 1 chrX:12631460-12631580 ( 109) TATCGATA 1 chr2R:16850296-16850416 ( 69) TATCGATA 1 chr2L:203711-203831 ( 60) TATCGATA 1 chr3R:24625568-24625688 ( 59) TATCGATA 1 chr3R:10696487-10696607 ( 15) TATCGATA 1 chr2R:10096791-10096911 ( 111) TATCGATA 1 chr2L:1177586-1177706 ( 97) TATCGATA 1 chr2R:12586843-12586963 ( 51) TATCGATA 1 chr3R:16655778-16655898 ( 34) TATCGATA 1 chr3R:14741469-14741589 ( 108) CATCGATA 1 chrX:23013358-23013478 ( 78) CATCGATA 1 chr3L:14776114-14776234 ( 73) CATCGATA 1 chr3R:17002314-17002434 ( 76) CATCGATA 1 chrX:9120952-9121072 ( 80) CATCGATA 1 chrX:8892686-8892806 ( 90) AATCGATA 1 chr3R:21111274-21111394 ( 87) AATCGATA 1 chr2R:18140694-18140814 ( 43) AATCGATA 1 chr3L:15563013-15563133 ( 75) AATCGATA 1 chr2R:10066592-10066712 ( 24) AATCGATA 1 chr3R:21273754-21273874 ( 112) AATCGATA 1 chrX:20257390-20257510 ( 103) TATCGATT 1 chr2R:22806982-22807102 ( 8) TATCGATT 1 chr3L:14789773-14789893 ( 90) TATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5371 E= 1.6e-005 -66 -24 -1160 106 170 -1160 -1160 -1160 -1160 -1160 -1160 169 -1160 239 -1160 -1160 -1160 -1160 238 -1160 170 -1160 -1160 -1160 -1160 -1160 -1160 169 156 -1160 -1160 -168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.6e-005 0.193548 0.161290 0.000000 0.645161 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.903226 0.000000 0.000000 0.096774 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 13.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCCAW MEME-3 width = 8 sites = 12 llr = 128 E-value = 4.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::87 pos.-specific C ::9:a92: probability G aa1a:1:: matrix T :::::::3 bits 2.4 ** ** 2.1 ** ** 1.9 ****** 1.7 ****** Relative 1.4 ****** Entropy 1.2 ******* (15.4 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21841318-21841438 113 4.65e-06 CTATCGATAA GGCGCCAA chr3R:23157898-23158018 107 4.65e-06 AAACAAATTT GGCGCCAA AATTAA chr3L:11708593-11708713 18 4.65e-06 CGTACGTGGT GGCGCCAA AATATACCAC chr3R:23348028-23348148 12 4.65e-06 TTTTGAAATT GGCGCCAA ACGTGTTACT chr3R:16431801-16431921 4 9.34e-06 ACA GGCGCCAT CTTACGTATT chr3L:6264576-6264696 28 9.34e-06 AAGATTTACT GGCGCCAT CTAGGGCCTT chr3R:31134146-31134266 43 9.34e-06 AAGTCAGCCA GGCGCCAT CTATTGGCAG chr2R:19469008-19469128 79 9.34e-06 AGCTCAGTGT GGCGCCAT CTAGTaacca chr3R:8354493-8354613 15 1.22e-05 CTCCTTTTCC GGCGCCCA CACACCACAA chr3L:8604460-8604580 76 1.22e-05 TCAAATCTCT GGCGCCCA CCGTGCAGCA chr3L:14545513-14545633 66 2.45e-05 TGTAAAATGT GGGGCCAA ATGGGTGACG chr3R:18914114-18914234 83 2.45e-05 TGAATATTTA GGCGCGAA AAAATACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21841318-21841438 4.6e-06 112_[+3] chr3R:23157898-23158018 4.6e-06 106_[+3]_6 chr3L:11708593-11708713 4.6e-06 17_[+3]_95 chr3R:23348028-23348148 4.6e-06 11_[+3]_101 chr3R:16431801-16431921 9.3e-06 3_[+3]_109 chr3L:6264576-6264696 9.3e-06 27_[+3]_85 chr3R:31134146-31134266 9.3e-06 42_[+3]_70 chr2R:19469008-19469128 9.3e-06 78_[+3]_34 chr3R:8354493-8354613 1.2e-05 14_[+3]_98 chr3L:8604460-8604580 1.2e-05 75_[+3]_37 chr3L:14545513-14545633 2.4e-05 65_[+3]_47 chr3R:18914114-18914234 2.4e-05 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCCAW width=8 seqs=12 chr3L:21841318-21841438 ( 113) GGCGCCAA 1 chr3R:23157898-23158018 ( 107) GGCGCCAA 1 chr3L:11708593-11708713 ( 18) GGCGCCAA 1 chr3R:23348028-23348148 ( 12) GGCGCCAA 1 chr3R:16431801-16431921 ( 4) GGCGCCAT 1 chr3L:6264576-6264696 ( 28) GGCGCCAT 1 chr3R:31134146-31134266 ( 43) GGCGCCAT 1 chr2R:19469008-19469128 ( 79) GGCGCCAT 1 chr3R:8354493-8354613 ( 15) GGCGCCCA 1 chr3L:8604460-8604580 ( 76) GGCGCCCA 1 chr3L:14545513-14545633 ( 66) GGGGCCAA 1 chr3R:18914114-18914234 ( 83) GGCGCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 4.9e+001 -1023 -1023 238 -1023 -1023 -1023 238 -1023 -1023 226 -120 -1023 -1023 -1023 238 -1023 -1023 239 -1023 -1023 -1023 226 -120 -1023 144 -20 -1023 -1023 112 -1023 -1023 10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.9e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.833333 0.166667 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCAW MEME-3 regular expression -------------------------------------------------------------------------------- GGCGCCA[AT] -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCHGCHSW MEME-4 width = 8 sites = 41 llr = 335 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::4::5:4 pos.-specific C :a3:a36: probability G a::a::42 matrix T ::3::3:4 bits 2.4 ** ** 2.1 ** ** 1.9 ** ** 1.7 ** ** Relative 1.4 ** ** * Entropy 1.2 ** ** * (11.8 bits) 1.0 ** ** * 0.7 ** ** * 0.5 ** ** * 0.2 ******** 0.0 -------- Multilevel GCAGCACT consensus T CGA sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23666844-23666964 60 4.67e-06 CCCGCTCTCT GCCGCAct ctctctctct chr3R:10411855-10411975 37 4.67e-06 AAGACAATTT GCCGCACT AAACGTATGT chrX:20257390-20257510 29 1.51e-05 TAATTAAGCG GCAGCACT GATTAGCTGG chr3R:4220934-4221054 78 2.44e-05 CTGCTCCTCC GCAGCCCT GGATTCTTTT chr3R:14741469-14741589 89 2.44e-05 TTTAATCAAT GCAGCCCT CTTACCCTAT chr3L:5789902-5790022 83 2.44e-05 aacCAAGTTA GCAGCCCT TCAAAGCAAA chr2L:7037964-7038084 30 2.44e-05 AGTTTCGACT GCAGCCCT GGTTCTTGCA chrX:19268812-19268932 59 2.44e-05 TGATGGCGAT GCAGCCCT GGCTGCACTG chr2R:16856788-16856908 5 3.76e-05 CATC GCCGCACG AAAAGGATGC chr2R:19469008-19469128 61 3.76e-05 CGGCACCTGC GCCGCCCA AGCTCAGTGT chr2R:8913987-8914107 112 5.62e-05 TCTCGATGTG GCAGCACG C chr2R:18433855-18433975 63 5.62e-05 AGCTAGCGAA GCTGCACT GTGGCTGCCT chrX:14602691-14602811 30 5.62e-05 TGCGACACAG GCTGCACT CGCTATGCGT chr2R:22806982-22807102 38 6.85e-05 TCCCTTTTAA GCCGCAGT GGCGCTCGAG chr3R:23028667-23028787 26 9.12e-05 AAAAAAATTA GCTGCACA CAGAAGATTT chr3L:4292242-4292362 61 9.12e-05 CACCTGAACT GCAGCAGT AACATATACT chr3R:12017023-12017143 3 9.12e-05 CG GCCGCTCT GGTTACCTGA chrX:1380441-1380561 51 9.12e-05 CTGGGCCAGC GCTGCACA ACACTGCCAC chrX:5084932-5085052 21 9.12e-05 AACACGAAAT GCCGCCGT TTTATAGCCG chr2R:24159286-24159406 52 1.17e-04 AATAGAGTTG GCAGCTCT GTTCGATGAA chr3R:21499624-21499744 11 1.17e-04 ACCGACCAGT GCTGCCCA TCGGCGGGCA chr3R:15804122-15804242 53 1.17e-04 GCTCAATGTG GCCGCAGA AAAATACCGC chr2R:21910009-21910129 41 1.17e-04 AGGAAAATAA GCTGCACG CCATAATTAC chr2R:10096791-10096911 75 1.17e-04 TTGAGTCAAT GCTGCCCA TTGTTTAAAC chr2L:20881489-20881609 70 1.38e-04 TTTGCATATC GCAGCAGA AATTGCTTGA chr3R:31134146-31134266 64 1.38e-04 TTGGCAGGTA GCagcaga tgctagagcg chr2L:2862241-2862361 97 1.38e-04 AAGCGGACGG GCCGCCGA CTCGTGATGG chr3R:27273619-27273739 56 1.38e-04 ACTGGAAAAC GCCGCTCA TACTAAACAA chr3R:22025448-22025568 106 1.38e-04 ACCCCCTGAA GCCGCAGG TGTTAGA chr2R:24657181-24657301 92 1.68e-04 TTTTCTCAGT GCAGCTCA AGCTTAAGTG chrX:12547719-12547839 110 1.68e-04 AAATTTCAAC GCAGCTCA ACA chr3R:10775367-10775487 78 2.00e-04 GCACAGTTGG GCTGCAGA AAGCTAGCCT chr3L:18898192-18898312 82 2.24e-04 TTAAAAGTGG GCTGCTCA CACGCGACTG chr3L:11708593-11708713 66 2.37e-04 CTGCGTAAGT GCTGCCGG ATCGAGCGAA chrX:13137200-13137320 105 2.47e-04 TTTGTTGAGT GCAGCTGA GATATTAA chr3R:10893568-10893688 23 2.60e-04 TGGCAACTCT GCTGCTGT GGTGGTTGCA chr3R:21118902-21119022 89 2.60e-04 taccttgtac gcagctgg tgggagtgcg chr2L:5972267-5972387 25 2.60e-04 TCGAGGGTAT GCAGCTGG TCGAGAGACA chr3L:6743139-6743259 74 2.72e-04 CACTAGAGAT GCGGCACT CGGGGCAAAG chrX:8273927-8274047 54 2.72e-04 ACAACGAAAT GCGGCACT TTTTGTATTG chr2R:12586843-12586963 91 2.80e-04 GTGTGTGAGA GCTGCTGG TACATGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23666844-23666964 4.7e-06 59_[+4]_53 chr3R:10411855-10411975 4.7e-06 36_[+4]_76 chrX:20257390-20257510 1.5e-05 28_[+4]_84 chr3R:4220934-4221054 2.4e-05 77_[+4]_35 chr3R:14741469-14741589 2.4e-05 88_[+4]_24 chr3L:5789902-5790022 2.4e-05 82_[+4]_30 chr2L:7037964-7038084 2.4e-05 29_[+4]_83 chrX:19268812-19268932 2.4e-05 58_[+4]_54 chr2R:16856788-16856908 3.8e-05 4_[+4]_108 chr2R:19469008-19469128 3.8e-05 60_[+4]_52 chr2R:8913987-8914107 5.6e-05 111_[+4]_1 chr2R:18433855-18433975 5.6e-05 62_[+4]_50 chrX:14602691-14602811 5.6e-05 29_[+4]_83 chr2R:22806982-22807102 6.9e-05 37_[+4]_75 chr3R:23028667-23028787 9.1e-05 25_[+4]_87 chr3L:4292242-4292362 9.1e-05 60_[+4]_52 chr3R:12017023-12017143 9.1e-05 2_[+4]_110 chrX:1380441-1380561 9.1e-05 50_[+4]_62 chrX:5084932-5085052 9.1e-05 20_[+4]_92 chr2R:24159286-24159406 0.00012 51_[+4]_61 chr3R:21499624-21499744 0.00012 10_[+4]_102 chr3R:15804122-15804242 0.00012 52_[+4]_60 chr2R:21910009-21910129 0.00012 40_[+4]_72 chr2R:10096791-10096911 0.00012 74_[+4]_38 chr2L:20881489-20881609 0.00014 69_[+4]_43 chr3R:31134146-31134266 0.00014 63_[+4]_49 chr2L:2862241-2862361 0.00014 96_[+4]_16 chr3R:27273619-27273739 0.00014 55_[+4]_57 chr3R:22025448-22025568 0.00014 105_[+4]_7 chr2R:24657181-24657301 0.00017 91_[+4]_21 chrX:12547719-12547839 0.00017 109_[+4]_3 chr3R:10775367-10775487 0.0002 77_[+4]_35 chr3L:18898192-18898312 0.00022 81_[+4]_31 chr3L:11708593-11708713 0.00024 65_[+4]_47 chrX:13137200-13137320 0.00025 104_[+4]_8 chr3R:10893568-10893688 0.00026 22_[+4]_90 chr3R:21118902-21119022 0.00026 88_[+4]_24 chr2L:5972267-5972387 0.00026 24_[+4]_88 chr3L:6743139-6743259 0.00027 73_[+4]_39 chrX:8273927-8274047 0.00027 53_[+4]_59 chr2R:12586843-12586963 0.00028 90_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCHGCHSW width=8 seqs=41 chr2R:23666844-23666964 ( 60) GCCGCACT 1 chr3R:10411855-10411975 ( 37) GCCGCACT 1 chrX:20257390-20257510 ( 29) GCAGCACT 1 chr3R:4220934-4221054 ( 78) GCAGCCCT 1 chr3R:14741469-14741589 ( 89) GCAGCCCT 1 chr3L:5789902-5790022 ( 83) GCAGCCCT 1 chr2L:7037964-7038084 ( 30) GCAGCCCT 1 chrX:19268812-19268932 ( 59) GCAGCCCT 1 chr2R:16856788-16856908 ( 5) GCCGCACG 1 chr2R:19469008-19469128 ( 61) GCCGCCCA 1 chr2R:8913987-8914107 ( 112) GCAGCACG 1 chr2R:18433855-18433975 ( 63) GCTGCACT 1 chrX:14602691-14602811 ( 30) GCTGCACT 1 chr2R:22806982-22807102 ( 38) GCCGCAGT 1 chr3R:23028667-23028787 ( 26) GCTGCACA 1 chr3L:4292242-4292362 ( 61) GCAGCAGT 1 chr3R:12017023-12017143 ( 3) GCCGCTCT 1 chrX:1380441-1380561 ( 51) GCTGCACA 1 chrX:5084932-5085052 ( 21) GCCGCCGT 1 chr2R:24159286-24159406 ( 52) GCAGCTCT 1 chr3R:21499624-21499744 ( 11) GCTGCCCA 1 chr3R:15804122-15804242 ( 53) GCCGCAGA 1 chr2R:21910009-21910129 ( 41) GCTGCACG 1 chr2R:10096791-10096911 ( 75) GCTGCCCA 1 chr2L:20881489-20881609 ( 70) GCAGCAGA 1 chr3R:31134146-31134266 ( 64) GCAGCAGA 1 chr2L:2862241-2862361 ( 97) GCCGCCGA 1 chr3R:27273619-27273739 ( 56) GCCGCTCA 1 chr3R:22025448-22025568 ( 106) GCCGCAGG 1 chr2R:24657181-24657301 ( 92) GCAGCTCA 1 chrX:12547719-12547839 ( 110) GCAGCTCA 1 chr3R:10775367-10775487 ( 78) GCTGCAGA 1 chr3L:18898192-18898312 ( 82) GCTGCTCA 1 chr3L:11708593-11708713 ( 66) GCTGCCGG 1 chrX:13137200-13137320 ( 105) GCAGCTGA 1 chr3R:10893568-10893688 ( 23) GCTGCTGT 1 chr3R:21118902-21119022 ( 89) GCAGCTGG 1 chr2L:5972267-5972387 ( 25) GCAGCTGG 1 chr3L:6743139-6743259 ( 74) GCGGCACT 1 chrX:8273927-8274047 ( 54) GCGGCACT 1 chr2R:12586843-12586963 ( 91) GCTGCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 2.0e+003 -1200 -1200 238 -1200 -1200 239 -1200 -1200 35 49 -198 -8 -1200 -1200 238 -1200 -1200 239 -1200 -1200 60 49 -1200 -21 -1200 173 93 -1200 25 -1200 2 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.390244 0.268293 0.048780 0.292683 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.463415 0.268293 0.000000 0.268293 0.000000 0.634146 0.365854 0.000000 0.365854 0.000000 0.195122 0.439024 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCHSW MEME-4 regular expression -------------------------------------------------------------------------------- GC[ATC]GC[ACT][CG][TA] -------------------------------------------------------------------------------- Time 25.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGGCC MEME-5 width = 8 sites = 7 llr = 79 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C ::a1::9a probability G 7a::aa1: matrix T :::9:::: bits 2.4 ** ** * 2.1 ** ** * 1.9 ** **** 1.7 ** **** Relative 1.4 *** **** Entropy 1.2 ******** (16.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGGCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24159286-24159406 25 2.94e-06 TGGCAATCCT GGCTGGCC AGCTACAAAA chr2L:11829362-11829482 99 2.94e-06 GGTCACGATC GGCTGGCC AGTGTTGGTA chr3R:22421045-22421165 88 2.94e-06 TATTTTAACA GGCTGGCC ACGTTGATAG chr2L:20881489-20881609 109 4.74e-06 AGGATTGAAC GGCCGGCC CTAC chrX:20257390-20257510 41 9.44e-06 AGCACTGATT AGCTGGCC AACGTGCCGC chr2L:1614219-1614339 64 9.44e-06 CACTGTCAGG AGCTGGCC GCTATTACAG chrX:20507860-20507980 20 1.24e-05 TGAGAGAAAG GGCTGGGC CACTTTACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24159286-24159406 2.9e-06 24_[+5]_88 chr2L:11829362-11829482 2.9e-06 98_[+5]_14 chr3R:22421045-22421165 2.9e-06 87_[+5]_25 chr2L:20881489-20881609 4.7e-06 108_[+5]_4 chrX:20257390-20257510 9.4e-06 40_[+5]_72 chr2L:1614219-1614339 9.4e-06 63_[+5]_49 chrX:20507860-20507980 1.2e-05 19_[+5]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGGCC width=8 seqs=7 chr2R:24159286-24159406 ( 25) GGCTGGCC 1 chr2L:11829362-11829482 ( 99) GGCTGGCC 1 chr3R:22421045-22421165 ( 88) GGCTGGCC 1 chr2L:20881489-20881609 ( 109) GGCCGGCC 1 chrX:20257390-20257510 ( 41) AGCTGGCC 1 chr2L:1614219-1614339 ( 64) AGCTGGCC 1 chrX:20507860-20507980 ( 20) GGCTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 1.0e+004 -10 -945 189 -945 -945 -945 238 -945 -945 239 -945 -945 -945 -42 -945 147 -945 -945 238 -945 -945 -945 238 -945 -945 216 -43 -945 -945 239 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.0e+004 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGCC MEME-5 regular expression -------------------------------------------------------------------------------- [GA]GCTGGCC -------------------------------------------------------------------------------- Time 31.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19268812-19268932 1.05e-02 58_[+4(2.44e-05)]_1_[+4(5.62e-05)]_\ 45 chr3L:8604460-8604580 4.88e-03 75_[+3(1.22e-05)]_37 chr3R:15347852-15347972 6.16e-02 120 chr2L:5972267-5972387 5.27e-03 120 chr3L:3760812-3760932 8.22e-01 120 chr2R:21091933-21092053 9.90e-01 120 chr2L:7031597-7031717 8.15e-02 120 chr2R:22368078-22368198 9.97e-01 120 chr3R:10775367-10775487 3.64e-02 120 chr2R:20319576-20319696 8.51e-01 120 chr2L:897267-897387 9.77e-01 120 chrX:10067684-10067804 4.07e-02 120 chr2L:7037964-7038084 7.72e-04 29_[+4(2.44e-05)]_83 chr3R:16655778-16655898 1.53e-01 33_[+2(3.16e-05)]_79 chr3R:18243749-18243869 3.02e-02 120 chr2L:6794985-6795105 4.59e-01 120 chr3R:18914114-18914234 2.13e-01 82_[+3(2.45e-05)]_30 chrX:13253147-13253267 4.07e-02 120 chr3L:6220290-6220410 8.22e-01 120 chr2R:23003261-23003381 7.80e-01 120 chr3R:12083698-12083818 9.87e-01 120 chr3L:721190-721310 8.04e-01 120 chr3R:4654667-4654787 2.84e-01 120 chr3R:23348028-23348148 1.13e-02 11_[+3(4.65e-06)]_101 chr3L:2782121-2782241 2.72e-01 120 chr3L:3543782-3543902 3.68e-01 120 chr2R:12586843-12586963 2.58e-04 50_[+2(3.16e-05)]_62 chr3L:20389100-20389220 3.68e-01 120 chr3R:26172150-26172270 9.98e-01 120 chr3R:30789568-30789688 7.02e-01 120 chr3R:21214892-21215012 2.91e-01 120 chr3L:11708593-11708713 3.18e-04 17_[+3(4.65e-06)]_10_[+1(8.11e-05)]_\ 77 chr3R:29131019-29131139 9.87e-01 120 chr3R:20555104-20555224 8.93e-01 120 chrX:8671440-8671560 2.26e-01 120 chr2L:1427921-1428041 2.67e-01 120 chr2R:13205469-13205589 7.43e-01 120 chr3R:5685750-5685870 1.21e-03 57_[+1(4.72e-05)]_55 chr4:959951-960071 1.07e-01 120 chr2R:19469008-19469128 2.13e-04 34_[+4(5.62e-05)]_18_[+4(3.76e-05)]_\ 10_[+3(9.34e-06)]_34 chr2L:5055091-5055211 9.04e-01 120 chr3L:7367986-7368106 8.10e-01 120 chr3R:22025448-22025568 1.29e-02 120 chr3L:18791564-18791684 9.75e-01 120 chr2R:16856788-16856908 7.76e-04 4_[+4(3.76e-05)]_108 chrX:10587558-10587678 6.79e-01 120 chr3L:5796768-5796888 6.51e-01 120 chr2L:3570107-3570227 3.51e-01 120 chr2R:17205954-17206074 9.93e-01 120 chrX:1859031-1859151 9.91e-01 120 chr3L:4413179-4413299 5.53e-01 120 chr3L:14789773-14789893 6.30e-02 120 chr3R:21118902-21119022 1.03e-01 120 chr3R:10893568-10893688 4.32e-04 56_[+1(8.11e-05)]_56 chr2L:4224238-4224358 1.20e-01 6_[+3(4.56e-05)]_106 chr3R:18998487-18998607 9.79e-01 120 chr3L:6609309-6609429 5.32e-02 120 chr3R:13644781-13644901 7.18e-01 120 chr2L:1177586-1177706 1.12e-04 61_[+1(4.72e-05)]_27_[+2(3.16e-05)]_\ 16 chrX:12241199-12241319 7.92e-01 120 chr3R:30200167-30200287 9.97e-01 120 chrX:5084932-5085052 2.69e-02 20_[+4(9.12e-05)]_92 chrX:20507860-20507980 1.45e-02 19_[+5(1.24e-05)]_93 chr3R:27273619-27273739 2.18e-02 120 chr2L:8239807-8239927 1.25e-01 120 chr3R:10411855-10411975 5.15e-02 36_[+4(4.67e-06)]_76 chr3L:5789902-5790022 1.20e-02 82_[+4(2.44e-05)]_30 chr3R:23760558-23760678 6.07e-03 120 chrX:12547719-12547839 4.02e-01 120 chr2R:10096791-10096911 5.31e-04 110_[+2(3.16e-05)]_2 chr2L:2862241-2862361 6.51e-03 120 chr2R:21910009-21910129 5.77e-02 120 chr3R:10696487-10696607 7.61e-04 14_[+2(3.16e-05)]_55_[+1(8.11e-05)]_\ 35 chrX:10825418-10825538 1.99e-01 120 chrX:8900265-8900385 1.39e-03 18_[+1(7.60e-06)]_94 chrX:8273927-8274047 1.20e-01 120 chr2L:2731505-2731625 1.33e-02 120 chr3R:18274487-18274607 9.36e-01 120 chr2R:16170825-16170945 5.80e-01 120 chrX:8574859-8574979 4.60e-01 120 chr3R:7492167-7492287 5.44e-01 120 chr3R:7082069-7082189 2.58e-01 120 chrX:8601294-8601414 9.16e-01 120 chrX:22449394-22449514 3.61e-04 19_[+3(5.03e-05)]_11_[+1(1.52e-05)]_\ 7_[+3(6.09e-05)]_59 chrX:771819-771939 8.93e-01 120 chrX:9120952-9121072 9.94e-02 79_[+2(5.11e-05)]_33 chr2R:7939098-7939218 1.61e-02 47_[+1(6.42e-05)]_65 chrX:14169233-14169353 5.74e-01 120 chr2R:17564749-17564869 6.20e-01 120 chr3R:24625568-24625688 1.32e-01 58_[+2(3.16e-05)]_54 chr3L:5554505-5554625 1.00e+00 120 chrX:11715408-11715528 6.05e-02 83_[+1(6.42e-05)]_29 chrX:10387784-10387904 8.22e-01 120 chr3L:21136065-21136185 4.16e-04 53_[+1(4.72e-05)]_11_[+1(7.60e-06)]_\ 40 chr3R:16996209-16996329 9.97e-01 120 chr2R:6984300-6984420 1.66e-02 86_[+1(6.42e-05)]_26 chr3R:24753649-24753769 3.01e-01 120 chr2R:8734563-8734683 8.24e-01 120 chr3L:11334155-11334275 8.37e-01 120 chr2L:203711-203831 3.22e-03 59_[+2(3.16e-05)]_53 chr3L:18898192-18898312 8.17e-03 120 chr4:69367-69487 9.04e-01 120 chr2L:21260950-21261070 5.60e-01 120 chr3L:9972686-9972806 4.11e-01 120 chr2R:16850296-16850416 9.26e-03 55_[+1(9.35e-05)]_5_[+2(3.16e-05)]_\ 44 chr3R:10888654-10888774 4.80e-01 120 chrX:12631460-12631580 2.06e-02 93_[+2(3.16e-05)]_7_[+2(3.16e-05)]_\ 4 chr3R:15804122-15804242 1.89e-02 120 chr3L:14969442-14969562 5.80e-02 120 chr2L:9938070-9938190 3.08e-01 120 chr2L:1150686-1150806 5.00e-03 99_[+1(8.11e-05)]_13 chr2R:8900218-8900338 6.93e-02 16_[+2(3.16e-05)]_96 chr2R:11809494-11809614 8.28e-01 120 chr3R:5856358-5856478 9.86e-01 120 chr2L:7027127-7027247 9.42e-02 120 chr3R:21187003-21187123 2.87e-01 120 chr2R:16202889-16203009 2.07e-01 120 chrX:1380441-1380561 1.87e-03 50_[+4(9.12e-05)]_30_[+1(4.72e-05)]_\ 24 chrX:3019669-3019789 7.44e-01 120 chr3L:9762265-9762385 1.11e-02 81_[+5(2.18e-05)]_31 chrX:11854862-11854982 3.01e-01 100_[+2(3.16e-05)]_12 chr2L:1614219-1614339 1.31e-04 10_[+1(7.60e-06)]_45_[+5(9.44e-06)]_\ 49 chr2R:16011516-16011636 9.40e-01 120 chr3R:21273754-21273874 1.24e-02 98_[+2(8.24e-05)]_5_[+2(8.24e-05)]_\ 1 chr3R:17002314-17002434 1.12e-02 75_[+2(5.11e-05)]_37 chr3L:1139545-1139665 9.41e-01 120 chr3R:21112538-21112658 7.13e-01 120 chr3L:14776114-14776234 5.62e-02 72_[+2(5.11e-05)]_40 chr2R:9388576-9388696 9.44e-01 120 chr3L:8440927-8441047 9.99e-01 120 chrX:19665933-19666053 1.33e-03 83_[+1(1.52e-05)]_29 chr3R:8354493-8354613 5.13e-04 14_[+3(1.22e-05)]_98 chr3R:12017023-12017143 2.70e-02 2_[+4(9.12e-05)]_110 chr3L:5604053-5604173 4.65e-01 120 chr3R:9759542-9759662 9.69e-01 120 chr2L:19059138-19059258 7.24e-01 120 chr3R:14657231-14657351 3.79e-01 120 chr3R:22039582-22039702 8.78e-01 120 chr3R:26230175-26230295 1.72e-02 65_[+3(5.03e-05)]_47 chr2R:24657181-24657301 1.56e-01 120 chr2R:20587412-20587532 3.04e-01 95_[+2(3.16e-05)]_17 chrX:10573629-10573749 9.11e-01 120 chr2L:20950909-20951029 1.72e-01 120 chr3L:21821847-21821967 7.07e-01 120 chr2R:25032014-25032134 4.07e-01 120 chrX:23013358-23013478 1.81e-01 77_[+2(5.11e-05)]_35 chr3R:29039713-29039833 8.60e-01 120 chr3R:11947180-11947300 6.79e-01 120 chr2L:19140949-19141069 7.50e-02 120 chr2R:13055019-13055139 6.25e-01 120 chr2L:13219978-13220098 1.19e-01 120 chr3R:31134146-31134266 1.70e-04 42_[+3(9.34e-06)]_70 chr2R:9681788-9681908 8.35e-01 120 chr3L:4292242-4292362 3.16e-01 60_[+4(9.12e-05)]_52 chr2R:13008297-13008417 9.98e-01 120 chr3L:16571508-16571628 6.84e-01 120 chr3R:30015192-30015312 9.27e-02 120 chrX:15076125-15076245 1.31e-01 120 chr3R:5217346-5217466 2.96e-02 99_[+1(5.19e-05)]_13 chr3L:21196713-21196833 1.18e-03 78_[+1(1.52e-05)]_34 chrX:14602691-14602811 2.15e-02 29_[+4(5.62e-05)]_83 chr3R:24206889-24207009 9.71e-01 120 chr3R:26654716-26654836 8.42e-01 120 chr2L:4459702-4459822 9.99e-01 120 chr2L:19517485-19517605 4.58e-01 120 chrX:1517635-1517755 1.95e-01 120 chrX:16782170-16782290 1.28e-01 120 chrX:13137200-13137320 2.38e-02 39_[+3(5.03e-05)]_73 chr3R:29591581-29591701 5.80e-01 120 chr2L:20918823-20918943 7.79e-01 120 chr3R:15472846-15472966 9.65e-01 120 chr3L:14545513-14545633 1.76e-02 65_[+3(2.45e-05)]_47 chrX:8561614-8561734 6.33e-01 120 chr3L:9402352-9402472 5.77e-02 66_[+1(6.42e-05)]_46 chr3R:11967627-11967747 7.68e-02 120 chr3R:21499624-21499744 5.93e-04 21_[+1(1.52e-05)]_91 chr3L:6743139-6743259 1.13e-02 120 chr3R:23157898-23158018 1.53e-04 7_[+2(3.16e-05)]_91_[+3(4.65e-06)]_\ 6 chr2R:17478508-17478628 7.93e-01 120 chr3L:12037871-12037991 7.40e-01 120 chr3L:21509641-21509761 6.46e-01 120 chrX:17330421-17330541 9.99e-01 120 chr3R:20312977-20313097 3.08e-01 120 chr3L:6606001-6606121 7.93e-03 83_[+1(2.75e-05)]_29 chr2R:7012087-7012207 2.20e-01 120 chr3R:31793814-31793934 2.52e-01 120 chr2R:22806982-22807102 3.11e-03 37_[+4(6.85e-05)]_75 chr2R:7474303-7474423 9.88e-01 120 chr2R:20274347-20274467 3.71e-01 120 chr3R:22421045-22421165 5.73e-03 87_[+5(2.94e-06)]_25 chr3R:13812825-13812945 6.05e-01 120 chr3L:361383-361503 1.82e-02 88_[+1(2.28e-05)]_24 chr2R:7525688-7525808 3.58e-03 69_[+1(4.72e-05)]_43 chr2R:23666844-23666964 3.08e-04 59_[+4(4.67e-06)]_53 chrX:2536241-2536361 4.38e-01 120 chrX:7001240-7001360 6.18e-01 120 chr2L:16647913-16648033 4.32e-01 120 chr3L:20471104-20471224 9.12e-02 120 chr3L:6264576-6264696 2.63e-02 27_[+3(9.34e-06)]_47_[+3(6.09e-05)]_\ 30 chr3L:11820096-11820216 1.00e+00 120 chr2R:21535574-21535694 4.18e-02 120 chr3L:13189354-13189474 5.20e-01 120 chr3R:17680903-17681023 8.96e-01 120 chrX:18370811-18370931 1.13e-02 60_[+1(2.75e-05)]_52 chr3L:5152456-5152576 8.40e-01 120 chr2R:10066592-10066712 4.34e-01 23_[+2(8.24e-05)]_89 chr3R:23943026-23943146 1.84e-02 120 chr3L:18784725-18784845 1.47e-03 37_[+1(2.28e-05)]_75 chrX:20257390-20257510 1.44e-05 28_[+4(1.51e-05)]_4_[+5(9.44e-06)]_\ 72 chr3L:15563013-15563133 1.24e-02 74_[+2(8.24e-05)]_38 chr2L:20945389-20945509 8.42e-01 120 chr3R:16431801-16431921 1.35e-02 3_[+3(9.34e-06)]_109 chrX:6741311-6741431 9.92e-01 120 chr2L:8488848-8488968 3.66e-01 120 chr2L:20881489-20881609 3.99e-03 108_[+5(4.74e-06)]_4 chr2L:6339663-6339783 5.71e-01 120 chr2L:10468545-10468665 5.77e-01 120 chr3R:10140342-10140462 1.08e-02 44_[+1(4.72e-05)]_68 chr3R:14741469-14741589 3.10e-03 88_[+4(2.44e-05)]_11_[+2(5.11e-05)]_\ 5 chr2R:11738657-11738777 9.55e-01 120 chr2L:3042247-3042367 4.63e-01 120 chr3R:23028667-23028787 8.69e-02 25_[+4(9.12e-05)]_87 chr2R:18140694-18140814 1.85e-02 42_[+2(8.24e-05)]_70 chr3R:21111274-21111394 2.38e-01 86_[+2(8.24e-05)]_26 chr3L:16615448-16615568 5.65e-04 66_[+1(1.52e-05)]_46 chr2R:18433855-18433975 1.75e-02 62_[+4(5.62e-05)]_50 chr3L:10899205-10899325 9.38e-01 120 chrX:8892686-8892806 1.18e-01 89_[+2(8.24e-05)]_23 chr3L:12803804-12803924 9.63e-01 120 chr2R:22374991-22375111 6.56e-04 41_[+1(6.42e-05)]_8_[+2(3.16e-05)]_\ 55 chr2R:8913987-8914107 8.76e-03 111_[+4(5.62e-05)]_1 chr3R:4220934-4221054 6.63e-04 77_[+4(2.44e-05)]_35 chrX:12454549-12454669 1.00e+00 120 chrX:12004121-12004241 9.92e-01 120 chr2L:11829362-11829482 4.90e-04 48_[+1(5.19e-05)]_42_[+5(2.94e-06)]_\ 14 chr3L:21841318-21841438 3.16e-05 103_[+2(3.16e-05)]_1_[+3(4.65e-06)] chr3L:7348173-7348293 2.14e-02 109_[+2(3.16e-05)]_3 chr2L:16703776-16703896 3.90e-01 120 chr3R:10882217-10882337 7.52e-01 120 chrX:10775821-10775941 3.95e-02 120 chrX:12466641-12466761 8.88e-01 120 chr2L:10698130-10698250 8.72e-01 120 chr2L:522906-523026 8.75e-01 120 chrX:1052797-1052917 1.29e-01 120 chr2L:1108470-1108590 8.47e-01 120 chr2R:24159286-24159406 1.67e-06 24_[+5(2.94e-06)]_15_[+1(9.35e-05)]_\ 49_[+1(7.60e-06)]_8 chr3L:9847615-9847735 3.45e-01 120 chrX:6340065-6340185 7.36e-01 120 chr3L:11350987-11351107 1.79e-02 29_[+1(4.72e-05)]_83 chr3R:5251718-5251838 6.52e-02 75_[+2(3.16e-05)]_37 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************