******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/dsf.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:179-299 1.0000 120 chrM:4463-4583 1.0000 120 chrM:5985-6105 1.0000 120 chrM:6945-7065 1.0000 120 chrM:4674-4794 1.0000 120 chrM:11344-11464 1.0000 120 chrM:7616-7736 1.0000 120 chrM:13226-13346 1.0000 120 chrM:12167-12287 1.0000 120 chrX:4677574-4677694 1.0000 120 chrM:2715-2835 1.0000 120 chrM:9786-9906 1.0000 120 chrM:7408-7528 1.0000 120 chr2L:5904701-5904821 1.0000 120 chrM:5367-5487 1.0000 120 chr2R:6786803-6786923 1.0000 120 chrM:3553-3673 1.0000 120 chrM:10705-10825 1.0000 120 chrM:370-490 1.0000 120 chrM:1718-1838 1.0000 120 chrM:5161-5281 1.0000 120 chrX:15812507-15812627 1.0000 120 chr3L:3252010-3252130 1.0000 120 chr3L:15988072-15988192 1.0000 120 chr2R:9915290-9915410 1.0000 120 chrM:8622-8742 1.0000 120 chr3L:7792366-7792486 1.0000 120 chrM:8826-8946 1.0000 120 chr3L:14564574-14564694 1.0000 120 chr2R:17405113-17405233 1.0000 120 chrM:14341-14461 1.0000 120 chr2R:22666716-22666836 1.0000 120 chrM:1920-2040 1.0000 120 chr2R:23522609-23522729 1.0000 120 chr3R:24298542-24298662 1.0000 120 chr2L:13289794-13289914 1.0000 120 chr3L:17569838-17569958 1.0000 120 chr2L:423244-423364 1.0000 120 chr3R:6380273-6380393 1.0000 120 chr2R:5760554-5760674 1.0000 120 chrX:4936572-4936692 1.0000 120 chr3L:13022964-13023084 1.0000 120 chr3L:3251280-3251400 1.0000 120 chr3R:24031984-24032104 1.0000 120 chr3R:12439516-12439636 1.0000 120 chr2L:8308189-8308309 1.0000 120 chr3R:22367413-22367533 1.0000 120 chr3R:19153840-19153960 1.0000 120 chrM:10915-11035 1.0000 120 chr2L:5972130-5972250 1.0000 120 chr3R:14308788-14308908 1.0000 120 chr3L:5604051-5604171 1.0000 120 chr3R:30601474-30601594 1.0000 120 chr2R:19292382-19292502 1.0000 120 chr3L:20786165-20786285 1.0000 120 chr2R:1513622-1513742 1.0000 120 chr4:481926-482046 1.0000 120 chr2L:7419547-7419667 1.0000 120 chr2R:6145827-6145947 1.0000 120 chr2L:3647656-3647776 1.0000 120 chr3L:11627918-11628038 1.0000 120 chr2R:6143574-6143694 1.0000 120 chr3R:9768429-9768549 1.0000 120 chr3L:14001954-14002074 1.0000 120 chr3L:11253222-11253342 1.0000 120 chr3L:13021901-13022021 1.0000 120 chr3L:3691796-3691916 1.0000 120 chr3L:8684495-8684615 1.0000 120 chr2R:6652926-6653046 1.0000 120 chr2L:19048824-19048944 1.0000 120 chr3R:26058210-26058330 1.0000 120 chr3L:11630827-11630947 1.0000 120 chr2L:10341527-10341647 1.0000 120 chr2L:5084776-5084896 1.0000 120 chr3R:6395613-6395733 1.0000 120 chr3L:7528370-7528490 1.0000 120 chr3R:17043339-17043459 1.0000 120 chr3R:19283622-19283742 1.0000 120 chr2R:16856060-16856180 1.0000 120 chrX:13845905-13846025 1.0000 120 chrX:4918684-4918804 1.0000 120 chr2R:17469482-17469602 1.0000 120 chrX:4610580-4610700 1.0000 120 chr3L:16865234-16865354 1.0000 120 chr2L:4187720-4187840 1.0000 120 chr3R:30281635-30281755 1.0000 120 chr3L:8544798-8544918 1.0000 120 chr2R:16720125-16720245 1.0000 120 chr2R:21183205-21183325 1.0000 120 chr3L:17655841-17655961 1.0000 120 chr3R:29869264-29869384 1.0000 120 chr2R:10122645-10122765 1.0000 120 chr2L:6723590-6723710 1.0000 120 chr3L:9371122-9371242 1.0000 120 chr3L:8702681-8702801 1.0000 120 chr3R:13849409-13849529 1.0000 120 chrX:10728199-10728319 1.0000 120 chr2R:6144311-6144431 1.0000 120 chr2L:8198847-8198967 1.0000 120 chr2R:12532879-12532999 1.0000 120 chr2L:479358-479478 1.0000 120 chr3R:18742381-18742501 1.0000 120 chr3L:9972575-9972695 1.0000 120 chr3L:6495565-6495685 1.0000 120 chr2L:5288298-5288418 1.0000 120 chrX:2648100-2648220 1.0000 120 chr3L:16582731-16582851 1.0000 120 chr2L:13882071-13882191 1.0000 120 chr2L:3341708-3341828 1.0000 120 chr3R:11974806-11974926 1.0000 120 chr3R:14741478-14741598 1.0000 120 chr3L:20432277-20432397 1.0000 120 chr2R:17419866-17419986 1.0000 120 chr3R:5100401-5100521 1.0000 120 chr3R:9240284-9240404 1.0000 120 chrX:20159947-20160067 1.0000 120 chr3L:15565794-15565914 1.0000 120 chr3R:12443262-12443382 1.0000 120 chr2L:12507765-12507885 1.0000 120 chr3R:22175918-22176038 1.0000 120 chr3L:3814086-3814206 1.0000 120 chr3L:7783560-7783680 1.0000 120 chr2L:7027222-7027342 1.0000 120 chr3R:18226105-18226225 1.0000 120 chr2L:11809490-11809610 1.0000 120 chr2L:8692461-8692581 1.0000 120 chr3L:21196720-21196840 1.0000 120 chr2L:18951776-18951896 1.0000 120 chr3L:12741697-12741817 1.0000 120 chr2R:18850614-18850734 1.0000 120 chr3R:15225400-15225520 1.0000 120 chr2L:530359-530479 1.0000 120 chr3R:13644813-13644933 1.0000 120 chr3R:11967542-11967662 1.0000 120 chr2R:5697872-5697992 1.0000 120 chr2R:24265277-24265397 1.0000 120 chr3R:23297656-23297776 1.0000 120 chr3L:9864512-9864632 1.0000 120 chr3L:15563526-15563646 1.0000 120 chrX:3053416-3053536 1.0000 120 chr3L:18109682-18109802 1.0000 120 chr2L:18590762-18590882 1.0000 120 chr3L:11074634-11074754 1.0000 120 chrX:5329419-5329539 1.0000 120 chrX:3761776-3761896 1.0000 120 chr3R:8801441-8801561 1.0000 120 chrX:10745143-10745263 1.0000 120 chrX:7526253-7526373 1.0000 120 chr3R:11244026-11244146 1.0000 120 chr2L:2481337-2481457 1.0000 120 chr3R:30811460-30811580 1.0000 120 chr3L:3343331-3343451 1.0000 120 chr2R:21060590-21060710 1.0000 120 chr2R:9109692-9109812 1.0000 120 chr2L:8488836-8488956 1.0000 120 chrX:11716613-11716733 1.0000 120 chr2R:10237843-10237963 1.0000 120 chr3L:18194488-18194608 1.0000 120 chr2R:9712311-9712431 1.0000 120 chr2L:8365906-8366026 1.0000 120 chr3R:9510344-9510464 1.0000 120 chr3L:1350737-1350857 1.0000 120 chr3L:14487082-14487202 1.0000 120 chr2L:8859991-8860111 1.0000 120 chr3L:12850004-12850124 1.0000 120 chr2L:15039384-15039504 1.0000 120 chr2R:14109813-14109933 1.0000 120 chr3L:728060-728180 1.0000 120 chrX:10744934-10745054 1.0000 120 chr2L:5252730-5252850 1.0000 120 chr2R:18440659-18440779 1.0000 120 chr3R:20780112-20780232 1.0000 120 chrX:11854797-11854917 1.0000 120 chr3L:19586083-19586203 1.0000 120 chr3L:8656803-8656923 1.0000 120 chr3L:8701840-8701960 1.0000 120 chr3R:19858432-19858552 1.0000 120 chr3L:18195148-18195268 1.0000 120 chr3L:20242033-20242153 1.0000 120 chr3L:15094870-15094990 1.0000 120 chr3R:13030700-13030820 1.0000 120 chr3L:12501356-12501476 1.0000 120 chr3L:9859934-9860054 1.0000 120 chr2L:439479-439599 1.0000 120 chr2L:67113-67233 1.0000 120 chr2L:5255995-5256115 1.0000 120 chr2R:18269857-18269977 1.0000 120 chrX:12463347-12463467 1.0000 120 chr3R:28599778-28599898 1.0000 120 chr3R:18215415-18215535 1.0000 120 chr2R:12475924-12476044 1.0000 120 chrX:19298905-19299025 1.0000 120 chr3R:21499674-21499794 1.0000 120 chr3L:10694252-10694372 1.0000 120 chr2R:21709084-21709204 1.0000 120 chr3R:22193688-22193808 1.0000 120 chrX:16286212-16286332 1.0000 120 chr2L:15414120-15414240 1.0000 120 chr2L:16302874-16302994 1.0000 120 chr2R:23970103-23970223 1.0000 120 chr3L:17907760-17907880 1.0000 120 chr3R:31793698-31793818 1.0000 120 chr2L:5292682-5292802 1.0000 120 chr3L:10328789-10328909 1.0000 120 chr3R:23915163-23915283 1.0000 120 chr3R:10265530-10265650 1.0000 120 chr3L:16796808-16796928 1.0000 120 chr2L:8381694-8381814 1.0000 120 chr3L:14031856-14031976 1.0000 120 chr3L:9367161-9367281 1.0000 120 chr2R:14621543-14621663 1.0000 120 chr4:1031836-1031956 1.0000 120 chr3L:550123-550243 1.0000 120 chr3L:5789850-5789970 1.0000 120 chr3L:12115225-12115345 1.0000 120 chr3L:608437-608557 1.0000 120 chr2L:6070812-6070932 1.0000 120 chr2R:22400215-22400335 1.0000 120 chr2L:13955834-13955954 1.0000 120 chr2R:14416981-14417101 1.0000 120 chr2R:18224950-18225070 1.0000 120 chrX:3408245-3408365 1.0000 120 chr3R:30285437-30285557 1.0000 120 chr2L:18463717-18463837 1.0000 120 chr3R:20588509-20588629 1.0000 120 chr2R:16124918-16125038 1.0000 120 chr2R:18802299-18802419 1.0000 120 chr3R:4402914-4403034 1.0000 120 chr3R:10079750-10079870 1.0000 120 chr3L:16615477-16615597 1.0000 120 chr3R:7024684-7024804 1.0000 120 chr2R:14618592-14618712 1.0000 120 chr3L:16711653-16711773 1.0000 120 chrX:448446-448566 1.0000 120 chr2L:10426772-10426892 1.0000 120 chr3L:17578507-17578627 1.0000 120 chrX:12463082-12463202 1.0000 120 chr3L:15260694-15260814 1.0000 120 chr3L:4313421-4313541 1.0000 120 chr3L:10976656-10976776 1.0000 120 chr3L:17557813-17557933 1.0000 120 chr3L:16779762-16779882 1.0000 120 chr3L:18801224-18801344 1.0000 120 chr3L:264419-264539 1.0000 120 chr2L:8299377-8299497 1.0000 120 chr3L:13486693-13486813 1.0000 120 chr2L:19577267-19577387 1.0000 120 chr2R:17625675-17625795 1.0000 120 chr2R:24591525-24591645 1.0000 120 chr3R:14729350-14729470 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_dsf/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/dsf.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.335 C 0.166 G 0.165 T 0.333 Background letter frequencies (from file dataset with add-one prior applied): A 0.335 C 0.166 G 0.165 T 0.333 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 34 llr = 309 E-value = 1.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::a:7 pos.-specific C 1::a::1: probability G ::::a::2 matrix T 9:a:::91 bits 2.6 ** 2.3 ** 2.1 ** 1.8 ** Relative 1.6 ***** Entropy 1.3 ******* (13.1 bits) 1.0 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17557813-17557933 17 3.80e-05 TATTTCGCAT TATCGATA TTATTTTTAA chrX:12463082-12463202 40 3.80e-05 AGTTTGCGCA TATCGATA AGCCATCGAT chr2L:10426772-10426892 85 3.80e-05 CACTTATCGA TATCGATA GGCAGTGGCC chr3R:10079750-10079870 44 3.80e-05 GTCAATTGCA TATCGATA CATTTCATCA chr3L:9367161-9367281 53 3.80e-05 TATGAAAATA TATCGATA TGTGTTGCAA chr2L:8381694-8381814 82 3.80e-05 CTGGATGAGA TATCGATA GATTTAGAGA chrX:16286212-16286332 14 3.80e-05 GAGTGCGATA TATCGATA GGTGCAGTGT chr2L:15039384-15039504 111 3.80e-05 CCTATCGGAC TATCGATA CA chr3L:1350737-1350857 43 3.80e-05 TAGTTACGTC TATCGATA TTTTCACCAT chr3L:12741697-12741817 68 3.80e-05 TCTACGCAGT TATCGATA GTGCAATAAA chr2L:18951776-18951896 58 3.80e-05 GACTGGCAAC TATCGATA GTACTGTCGA chr3R:18226105-18226225 37 3.80e-05 ATTTGATTTG TATCGATA TGCAGGCTCA chrX:20159947-20160067 88 3.80e-05 TATCAATATG TATCGATA TATTTAGAGA chr2R:17419866-17419986 11 3.80e-05 GAGTAACAGT TATCGATA GAGGACCAAC chr3L:16582731-16582851 81 3.80e-05 TGTTAAAATA TATCGATA TTAAAGCACA chr3L:7528370-7528490 40 3.80e-05 TTGTCACAGC TATCGATA TCATCGAGTA chr3L:11630827-11630947 109 3.80e-05 TTACCCTTTT TATCGATA AATT chr3R:30601474-30601594 55 3.80e-05 TGATTTCGTA TATCGATA ATCGACTGAG chr2L:8308189-8308309 61 3.80e-05 TAAATATTTA TATCGATA TAAAAAAGTA chr3R:12439516-12439636 59 3.80e-05 TAAAATACGC TATCGATA CTTATCTAAC chr3L:13486693-13486813 88 5.68e-05 GCTGAGCAAA TATCGATG TGAATACAGA chr3R:4402914-4403034 105 5.68e-05 ATACGAAATG TATCGATG TATCGCAT chr3R:15225400-15225520 64 5.68e-05 ACCCCAAATA TATCGATG TAAACCACAA chr3L:3814086-3814206 79 5.68e-05 GCAGCTAAAA TATCGATG GTGTGTCGTA chr4:481926-482046 38 5.68e-05 GCTGGAGAAA TATCGATG AAAACATCGA chr2R:10237843-10237963 91 9.45e-05 TATACTAAAA TATCGATT TATGGAAGTT chr2R:18850614-18850734 20 9.45e-05 TCGGTGATGT TATCGATT ACTTATTTAT chr3R:9240284-9240404 42 9.45e-05 TTCGATTTGA TATCGATT AAGCGCTGCA chr3L:11627918-11628038 51 9.45e-05 AATTGATATA TATCGATT TTTGTGCTCG chr3L:20786165-20786285 50 9.45e-05 GGCAGCACGG TATCGATT GCCTGCTCTT chrX:11854797-11854917 10 1.32e-04 TCGACTTTT TATCGACA AGTGGGGGAT chr3R:14741478-14741598 99 1.32e-04 TTACCCTATA CATCGATA GTATCGCATA chr2R:21183205-21183325 66 1.32e-04 TGTTTTGATG CATCGATA ACAACAAAAA chr2L:8365906-8366026 71 1.51e-04 TCAGAAAATC TATCGACG CGCGGAAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17557813-17557933 3.8e-05 16_[+1]_96 chrX:12463082-12463202 3.8e-05 39_[+1]_73 chr2L:10426772-10426892 3.8e-05 84_[+1]_28 chr3R:10079750-10079870 3.8e-05 43_[+1]_69 chr3L:9367161-9367281 3.8e-05 52_[+1]_60 chr2L:8381694-8381814 3.8e-05 81_[+1]_31 chrX:16286212-16286332 3.8e-05 13_[+1]_99 chr2L:15039384-15039504 3.8e-05 110_[+1]_2 chr3L:1350737-1350857 3.8e-05 42_[+1]_70 chr3L:12741697-12741817 3.8e-05 67_[+1]_45 chr2L:18951776-18951896 3.8e-05 57_[+1]_55 chr3R:18226105-18226225 3.8e-05 36_[+1]_76 chrX:20159947-20160067 3.8e-05 87_[+1]_25 chr2R:17419866-17419986 3.8e-05 10_[+1]_102 chr3L:16582731-16582851 3.8e-05 80_[+1]_32 chr3L:7528370-7528490 3.8e-05 39_[+1]_73 chr3L:11630827-11630947 3.8e-05 108_[+1]_4 chr3R:30601474-30601594 3.8e-05 54_[+1]_58 chr2L:8308189-8308309 3.8e-05 60_[+1]_52 chr3R:12439516-12439636 3.8e-05 58_[+1]_54 chr3L:13486693-13486813 5.7e-05 87_[+1]_25 chr3R:4402914-4403034 5.7e-05 104_[+1]_8 chr3R:15225400-15225520 5.7e-05 63_[+1]_49 chr3L:3814086-3814206 5.7e-05 78_[+1]_34 chr4:481926-482046 5.7e-05 37_[+1]_75 chr2R:10237843-10237963 9.5e-05 90_[+1]_22 chr2R:18850614-18850734 9.5e-05 19_[+1]_93 chr3R:9240284-9240404 9.5e-05 41_[+1]_71 chr3L:11627918-11628038 9.5e-05 50_[+1]_62 chr3L:20786165-20786285 9.5e-05 49_[+1]_63 chrX:11854797-11854917 0.00013 9_[+1]_103 chr3R:14741478-14741598 0.00013 98_[+1]_14 chr2R:21183205-21183325 0.00013 65_[+1]_47 chr2L:8365906-8366026 0.00015 70_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=34 chr3L:17557813-17557933 ( 17) TATCGATA 1 chrX:12463082-12463202 ( 40) TATCGATA 1 chr2L:10426772-10426892 ( 85) TATCGATA 1 chr3R:10079750-10079870 ( 44) TATCGATA 1 chr3L:9367161-9367281 ( 53) TATCGATA 1 chr2L:8381694-8381814 ( 82) TATCGATA 1 chrX:16286212-16286332 ( 14) TATCGATA 1 chr2L:15039384-15039504 ( 111) TATCGATA 1 chr3L:1350737-1350857 ( 43) TATCGATA 1 chr3L:12741697-12741817 ( 68) TATCGATA 1 chr2L:18951776-18951896 ( 58) TATCGATA 1 chr3R:18226105-18226225 ( 37) TATCGATA 1 chrX:20159947-20160067 ( 88) TATCGATA 1 chr2R:17419866-17419986 ( 11) TATCGATA 1 chr3L:16582731-16582851 ( 81) TATCGATA 1 chr3L:7528370-7528490 ( 40) TATCGATA 1 chr3L:11630827-11630947 ( 109) TATCGATA 1 chr3R:30601474-30601594 ( 55) TATCGATA 1 chr2L:8308189-8308309 ( 61) TATCGATA 1 chr3R:12439516-12439636 ( 59) TATCGATA 1 chr3L:13486693-13486813 ( 88) TATCGATG 1 chr3R:4402914-4403034 ( 105) TATCGATG 1 chr3R:15225400-15225520 ( 64) TATCGATG 1 chr3L:3814086-3814206 ( 79) TATCGATG 1 chr4:481926-482046 ( 38) TATCGATG 1 chr2R:10237843-10237963 ( 91) TATCGATT 1 chr2R:18850614-18850734 ( 20) TATCGATT 1 chr3R:9240284-9240404 ( 42) TATCGATT 1 chr3L:11627918-11628038 ( 51) TATCGATT 1 chr3L:20786165-20786285 ( 50) TATCGATT 1 chrX:11854797-11854917 ( 10) TATCGACA 1 chr3R:14741478-14741598 ( 99) CATCGATA 1 chr2R:21183205-21183325 ( 66) CATCGATA 1 chr2L:8365906-8366026 ( 71) TATCGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 1.8e-005 -1173 -150 -1173 150 158 -1173 -1173 -1173 -1173 -1173 -1173 158 -1173 259 -1173 -1173 -1173 -1173 260 -1173 158 -1173 -1173 -1173 -1173 -150 -1173 150 101 -1173 10 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.8e-005 0.000000 0.058824 0.000000 0.941176 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.058824 0.000000 0.941176 0.676471 0.000000 0.176471 0.147059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMRCTGC MEME-2 width = 8 sites = 24 llr = 226 E-value = 3.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::35:1:: pos.-specific C 2a5:a1:8 probability G 8:15:1a: matrix T :::::8:2 bits 2.6 * * 2.3 * * * 2.1 * * * 1.8 ** * * Relative 1.6 ** * ** Entropy 1.3 ** * ** (13.6 bits) 1.0 ** ** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCACTGC consensus AG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6145827-6145947 35 1.14e-06 AATTATCAGA GCCGCTGC CATGAAATTA chr3L:17655841-17655961 34 3.44e-06 AGTTTTTAGA GCCACTGC AAGGTGGCGT chr2L:2481337-2481457 101 5.73e-06 TTCTTTCAGT GCAGCTGC AGGTGTGTGT chr2L:4187720-4187840 19 5.73e-06 attattTTGT GCAGCTGC TCACAATAAC chrM:5367-5487 80 5.73e-06 TGGTTTTGAA GCAGCTGC ATGATATTGA chrX:10744934-10745054 20 7.99e-06 TTTCAGTCTT GCCGCGGC GATGGGAAAG chr2L:7027222-7027342 34 7.99e-06 GAAGTGTGTG GCCGCCGC CCGCGTTTCC chr3R:20780112-20780232 39 1.38e-05 AACTGAGAGT GCAACTGC atcggccgat chr3R:15225400-15225520 22 1.38e-05 TAGTGTGCCC GCAACTGC AACCGTTAAA chr3R:18226105-18226225 89 1.38e-05 ATGCTGCACT GCAACTGC AATTTAAATA chr2R:16720125-16720245 70 1.38e-05 CATACGTGCA GCAACTGC TGTGCATAGG chr2R:18802299-18802419 92 1.84e-05 GCGAACGACT GCGACTGC TTGAGTAGCT chr3R:12439516-12439636 5 1.84e-05 TAAA GCCGCTGT AATTAAAAAG chr3R:14308788-14308908 73 2.07e-05 TCAGTCGAAG GCCACCGC AGCCGTTGCT chr2L:15039384-15039504 19 2.41e-05 TAACCAAATG CCCACTGC CATCCAAATC chr3L:16711653-16711773 106 2.87e-05 CCGTAATGGC GCCACTGT TTTGTGG chrX:4936572-4936692 33 2.87e-05 ATCGCAATAC GCCACTGT TCATAACAGA chrM:12167-12287 71 3.56e-05 AATAGTCTGA GCCACAGC TCGCAAACCT chrX:4677574-4677694 64 4.48e-05 GCAGGTACCG CCCGCGGC AGGTACACAG chr2L:12507765-12507885 91 5.64e-05 gacagaagca gcagcagc agtaataaca chrX:15812507-15812627 10 5.86e-05 CAGCCGTGA GCGGCTGT AAAAGTGTGC chr2L:8381694-8381814 25 7.12e-05 ATTTCGTCAG CCGACTGC AGCAACGTGT chr2L:11809490-11809610 41 7.12e-05 AATTAGGGAT GGCACTGC GTCGATAGCT chr2R:23522609-23522729 38 7.12e-05 AAATACTGCA CCCGCTGT GCATATAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6145827-6145947 1.1e-06 34_[+2]_78 chr3L:17655841-17655961 3.4e-06 33_[+2]_79 chr2L:2481337-2481457 5.7e-06 100_[+2]_12 chr2L:4187720-4187840 5.7e-06 18_[+2]_94 chrM:5367-5487 5.7e-06 79_[+2]_33 chrX:10744934-10745054 8e-06 19_[+2]_93 chr2L:7027222-7027342 8e-06 33_[+2]_79 chr3R:20780112-20780232 1.4e-05 38_[+2]_74 chr3R:15225400-15225520 1.4e-05 21_[+2]_91 chr3R:18226105-18226225 1.4e-05 88_[+2]_24 chr2R:16720125-16720245 1.4e-05 69_[+2]_43 chr2R:18802299-18802419 1.8e-05 91_[+2]_21 chr3R:12439516-12439636 1.8e-05 4_[+2]_108 chr3R:14308788-14308908 2.1e-05 72_[+2]_40 chr2L:15039384-15039504 2.4e-05 18_[+2]_94 chr3L:16711653-16711773 2.9e-05 105_[+2]_7 chrX:4936572-4936692 2.9e-05 32_[+2]_80 chrM:12167-12287 3.6e-05 70_[+2]_42 chrX:4677574-4677694 4.5e-05 63_[+2]_49 chr2L:12507765-12507885 5.6e-05 90_[+2]_22 chrX:15812507-15812627 5.9e-05 9_[+2]_103 chr2L:8381694-8381814 7.1e-05 24_[+2]_88 chr2L:11809490-11809610 7.1e-05 40_[+2]_72 chr2R:23522609-23522729 7.1e-05 37_[+2]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMRCTGC width=8 seqs=24 chr2R:6145827-6145947 ( 35) GCCGCTGC 1 chr3L:17655841-17655961 ( 34) GCCACTGC 1 chr2L:2481337-2481457 ( 101) GCAGCTGC 1 chr2L:4187720-4187840 ( 19) GCAGCTGC 1 chrM:5367-5487 ( 80) GCAGCTGC 1 chrX:10744934-10745054 ( 20) GCCGCGGC 1 chr2L:7027222-7027342 ( 34) GCCGCCGC 1 chr3R:20780112-20780232 ( 39) GCAACTGC 1 chr3R:15225400-15225520 ( 22) GCAACTGC 1 chr3R:18226105-18226225 ( 89) GCAACTGC 1 chr2R:16720125-16720245 ( 70) GCAACTGC 1 chr2R:18802299-18802419 ( 92) GCGACTGC 1 chr3R:12439516-12439636 ( 5) GCCGCTGT 1 chr3R:14308788-14308908 ( 73) GCCACCGC 1 chr2L:15039384-15039504 ( 19) CCCACTGC 1 chr3L:16711653-16711773 ( 106) GCCACTGT 1 chrX:4936572-4936692 ( 33) GCCACTGT 1 chrM:12167-12287 ( 71) GCCACAGC 1 chrX:4677574-4677694 ( 64) CCCGCGGC 1 chr2L:12507765-12507885 ( 91) GCAGCAGC 1 chrX:15812507-15812627 ( 10) GCGGCTGT 1 chr2L:8381694-8381814 ( 25) CCGACTGC 1 chr2L:11809490-11809610 ( 41) GGCACTGC 1 chr2R:23522609-23522729 ( 38) CCCGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 3.6e-001 -1123 0 233 -1123 -1123 252 -199 -1123 -1 170 -40 -1123 69 -1123 147 -1123 -1123 259 -1123 -1123 -201 -100 -99 117 -1123 -1123 260 -1123 -1123 225 -1123 -68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.6e-001 0.000000 0.166667 0.833333 0.000000 0.000000 0.958333 0.041667 0.000000 0.333333 0.541667 0.125000 0.000000 0.541667 0.000000 0.458333 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.083333 0.083333 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.791667 0.000000 0.208333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMRCTGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[CA][AG]CTG[CT] -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCBGGYGG MEME-3 width = 8 sites = 11 llr = 115 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C :85::5:1 probability G a:3aa:79 matrix T :23::5:: bits 2.6 * ** 2.3 * ** 2.1 * ** * 1.8 ** ** * Relative 1.6 ** ** ** Entropy 1.3 ** ** ** (15.1 bits) 1.0 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCGGCGG consensus G TA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5604051-5604171 99 2.24e-06 ATTGTGACTC GCCGGTGG TGTAGGCTGG chr3L:16615477-16615597 34 3.36e-06 GTATCGCATT GCTGGCGG GCAGTGTTGT chr2R:18802299-18802419 107 3.36e-06 TGCTTGAGTA GCTGGCGG TGGTCG chr2L:8859991-8860111 17 4.48e-06 TCACTTTCTG GCGGGTGG GTGTGTGTTT chr2L:479358-479478 83 4.48e-06 TGGGGGCGTT GCGGGTGG TGAAGGTAGC chrX:4936572-4936692 65 5.61e-06 GAAGTTCGAT GCCGGCAG GGAATGAATG chr3L:16865234-16865354 100 1.01e-05 CCAAAAGCGC GTCGGCGG ATCGCGTTCG chr2L:15039384-15039504 70 1.30e-05 CAAACATATC GCCGGTAG GCAGCGACTA chr2R:9915290-9915410 22 1.46e-05 GCAAATATTG GCGGGCGC GTTTACCCCT chr3L:21196720-21196840 72 1.69e-05 CCAAACACCA GCTGGCAG CCATTCGGAG chr3R:4402914-4403034 23 2.14e-05 AATGTATATT GTCGGTGG CGTGTATAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5604051-5604171 2.2e-06 98_[+3]_14 chr3L:16615477-16615597 3.4e-06 33_[+3]_79 chr2R:18802299-18802419 3.4e-06 106_[+3]_6 chr2L:8859991-8860111 4.5e-06 16_[+3]_96 chr2L:479358-479478 4.5e-06 82_[+3]_30 chrX:4936572-4936692 5.6e-06 64_[+3]_48 chr3L:16865234-16865354 1e-05 99_[+3]_13 chr2L:15039384-15039504 1.3e-05 69_[+3]_43 chr2R:9915290-9915410 1.5e-05 21_[+3]_91 chr3L:21196720-21196840 1.7e-05 71_[+3]_41 chr3R:4402914-4403034 2.1e-05 22_[+3]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCBGGYGG width=8 seqs=11 chr3L:5604051-5604171 ( 99) GCCGGTGG 1 chr3L:16615477-16615597 ( 34) GCTGGCGG 1 chr2R:18802299-18802419 ( 107) GCTGGCGG 1 chr2L:8859991-8860111 ( 17) GCGGGTGG 1 chr2L:479358-479478 ( 83) GCGGGTGG 1 chrX:4936572-4936692 ( 65) GCCGGCAG 1 chr3L:16865234-16865354 ( 100) GTCGGCGG 1 chr2L:15039384-15039504 ( 70) GCCGGTAG 1 chr2R:9915290-9915410 ( 22) GCGGGCGC 1 chr3L:21196720-21196840 ( 72) GCTGGCAG 1 chr3R:4402914-4403034 ( 23) GTCGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 4.6e+003 -1010 -1010 260 -1010 -1010 230 -1010 -87 -1010 145 72 -29 -1010 -1010 260 -1010 -1010 -1010 260 -1010 -1010 171 -1010 45 -30 -1010 214 -1010 -1010 -87 246 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.454545 0.272727 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.000000 0.454545 0.272727 0.000000 0.727273 0.000000 0.000000 0.090909 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBGGYGG MEME-3 regular expression -------------------------------------------------------------------------------- GC[CGT]GG[CT][GA]G -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCAGC MEME-4 width = 8 sites = 5 llr = 61 E-value = 8.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::8:: pos.-specific C ::::a::a probability G a:aa:2a: matrix T :8:::::: bits 2.6 * *** ** 2.3 * *** ** 2.1 * *** ** 1.8 * *** ** Relative 1.6 * *** ** Entropy 1.3 * *** ** (17.5 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCAGC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:728060-728180 97 2.28e-06 TTCTGCTAGT GTGGCAGC CAACCCTTTT chr3L:7783560-7783680 110 2.28e-06 ATACTTTTTC GTGGCAGC GTG chr2L:6723590-6723710 94 2.28e-06 TTTGTGCGGT GTGGCAGC ATTAGTTTTA chr2L:10426772-10426892 68 3.40e-06 AAAAAATCAT GTGGCGGC ACTTATCGAT chr2L:19577267-19577387 69 5.69e-06 ACACTATCGC GAGGCAGC ATAAAAATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:728060-728180 2.3e-06 96_[+4]_16 chr3L:7783560-7783680 2.3e-06 109_[+4]_3 chr2L:6723590-6723710 2.3e-06 93_[+4]_19 chr2L:10426772-10426892 3.4e-06 67_[+4]_45 chr2L:19577267-19577387 5.7e-06 68_[+4]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCAGC width=8 seqs=5 chr3L:728060-728180 ( 97) GTGGCAGC 1 chr3L:7783560-7783680 ( 110) GTGGCAGC 1 chr2L:6723590-6723710 ( 94) GTGGCAGC 1 chr2L:10426772-10426892 ( 68) GTGGCGGC 1 chr2L:19577267-19577387 ( 69) GAGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 8.7e+003 -897 -897 260 -897 -74 -897 -897 126 -897 -897 260 -897 -897 -897 260 -897 -897 258 -897 -897 125 -897 28 -897 -897 -897 260 -897 -897 258 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.7e+003 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-4 regular expression -------------------------------------------------------------------------------- G[TA]GGC[AG]GC -------------------------------------------------------------------------------- Time 26.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CGAGMGGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 5.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:5::: pos.-specific C a:::5::: probability G :a:a:aaa matrix T :::::::: bits 2.6 ** * *** 2.3 ** * *** 2.1 ** * *** 1.8 ** * *** Relative 1.6 **** *** Entropy 1.3 **** *** (18.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGAGAGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18802299-18802419 60 1.13e-06 GTTCAGCGGA CGAGCGGG TATTGAACGT chrX:10728199-10728319 101 3.41e-06 AAACCGAAAT CGAGAGGG TCTCGAGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18802299-18802419 1.1e-06 59_[+5]_53 chrX:10728199-10728319 3.4e-06 100_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGAGMGGG width=8 seqs=2 chr2R:18802299-18802419 ( 60) CGAGCGGG 1 chrX:10728199-10728319 ( 101) CGAGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 5.1e+004 -765 258 -765 -765 -765 -765 259 -765 157 -765 -765 -765 -765 -765 259 -765 58 158 -765 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 259 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGMGGG MEME-5 regular expression -------------------------------------------------------------------------------- CGAG[AC]GGG -------------------------------------------------------------------------------- Time 32.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:179-299 9.18e-01 120 chrM:4463-4583 3.89e-01 120 chrM:5985-6105 9.98e-01 120 chrM:6945-7065 9.07e-01 120 chrM:4674-4794 9.80e-01 120 chrM:11344-11464 7.87e-01 120 chrM:7616-7736 9.90e-01 120 chrM:13226-13346 8.62e-02 110_[+3(4.63e-05)]_2 chrM:12167-12287 1.89e-01 70_[+2(3.56e-05)]_42 chrX:4677574-4677694 5.13e-04 63_[+2(4.48e-05)]_49 chrM:2715-2835 4.96e-01 120 chrM:9786-9906 1.00e+00 120 chrM:7408-7528 4.73e-02 120 chr2L:5904701-5904821 8.41e-01 120 chrM:5367-5487 1.35e-03 79_[+2(5.73e-06)]_33 chr2R:6786803-6786923 9.20e-04 81_[+5(9.03e-06)]_31 chrM:3553-3673 4.82e-02 90_[+5(4.77e-05)]_22 chrM:10705-10825 4.36e-01 120 chrM:370-490 7.86e-01 120 chrM:1718-1838 3.03e-01 120 chrM:5161-5281 9.36e-01 120 chrX:15812507-15812627 8.50e-03 9_[+2(5.86e-05)]_103 chr3L:3252010-3252130 7.52e-03 120 chr3L:15988072-15988192 7.61e-01 120 chr2R:9915290-9915410 1.94e-04 21_[+3(1.46e-05)]_91 chrM:8622-8742 9.15e-01 120 chr3L:7792366-7792486 6.31e-01 120 chrM:8826-8946 9.47e-01 120 chr3L:14564574-14564694 8.29e-02 120 chr2R:17405113-17405233 6.21e-02 120 chrM:14341-14461 7.25e-01 120 chr2R:22666716-22666836 7.23e-01 120 chrM:1920-2040 5.01e-01 120 chr2R:23522609-23522729 2.06e-01 37_[+2(7.12e-05)]_75 chr3R:24298542-24298662 2.71e-01 120 chr2L:13289794-13289914 8.99e-01 120 chr3L:17569838-17569958 1.86e-01 120 chr2L:423244-423364 9.90e-01 120 chr3R:6380273-6380393 2.97e-01 120 chr2R:5760554-5760674 7.69e-01 120 chrX:4936572-4936692 8.54e-05 32_[+2(2.87e-05)]_24_[+3(5.61e-06)]_\ 48 chr3L:13022964-13023084 3.56e-01 120 chr3L:3251280-3251400 6.14e-01 120 chr3R:24031984-24032104 9.36e-01 120 chr3R:12439516-12439636 1.73e-03 4_[+2(1.84e-05)]_46_[+1(3.80e-05)]_\ 54 chr2L:8308189-8308309 6.84e-02 60_[+1(3.80e-05)]_52 chr3R:22367413-22367533 1.01e-02 120 chr3R:19153840-19153960 8.04e-01 120 chrM:10915-11035 1.98e-01 120 chr2L:5972130-5972250 7.70e-01 120 chr3R:14308788-14308908 2.14e-02 72_[+2(2.07e-05)]_40 chr3L:5604051-5604171 4.34e-03 98_[+3(2.24e-06)]_14 chr3R:30601474-30601594 1.98e-02 54_[+1(3.80e-05)]_58 chr2R:19292382-19292502 8.31e-01 120 chr3L:20786165-20786285 2.47e-04 49_[+1(9.45e-05)]_63 chr2R:1513622-1513742 2.90e-02 120 chr4:481926-482046 3.54e-03 37_[+1(5.68e-05)]_75 chr2L:7419547-7419667 9.98e-01 120 chr2R:6145827-6145947 2.07e-03 34_[+2(1.14e-06)]_78 chr2L:3647656-3647776 9.86e-01 120 chr3L:11627918-11628038 3.54e-02 50_[+1(9.45e-05)]_62 chr2R:6143574-6143694 8.74e-01 120 chr3R:9768429-9768549 3.73e-01 120 chr3L:14001954-14002074 9.58e-01 120 chr3L:11253222-11253342 6.01e-01 120 chr3L:13021901-13022021 2.19e-01 120 chr3L:3691796-3691916 3.65e-02 120 chr3L:8684495-8684615 2.17e-01 120 chr2R:6652926-6653046 2.24e-01 120 chr2L:19048824-19048944 1.00e+00 120 chr3R:26058210-26058330 1.73e-01 120 chr3L:11630827-11630947 7.61e-02 108_[+1(3.80e-05)]_4 chr2L:10341527-10341647 9.78e-01 120 chr2L:5084776-5084896 9.10e-01 120 chr3R:6395613-6395733 8.05e-01 120 chr3L:7528370-7528490 8.26e-03 15_[+1(3.80e-05)]_16_[+1(3.80e-05)]_\ 73 chr3R:17043339-17043459 9.95e-01 120 chr3R:19283622-19283742 9.91e-01 120 chr2R:16856060-16856180 7.15e-01 120 chrX:13845905-13846025 4.58e-02 120 chrX:4918684-4918804 7.06e-01 120 chr2R:17469482-17469602 8.78e-01 120 chrX:4610580-4610700 2.57e-02 120 chr3L:16865234-16865354 6.85e-04 99_[+3(1.01e-05)]_13 chr2L:4187720-4187840 6.59e-03 18_[+2(5.73e-06)]_94 chr3R:30281635-30281755 2.04e-01 120 chr3L:8544798-8544918 6.28e-01 120 chr2R:16720125-16720245 5.54e-02 69_[+2(1.38e-05)]_43 chr2R:21183205-21183325 1.04e-02 120 chr3L:17655841-17655961 7.19e-03 33_[+2(3.44e-06)]_24_[+2(2.07e-05)]_\ 47 chr3R:29869264-29869384 1.07e-01 120 chr2R:10122645-10122765 9.96e-01 120 chr2L:6723590-6723710 1.06e-02 93_[+4(2.28e-06)]_19 chr3L:9371122-9371242 4.12e-01 120 chr3L:8702681-8702801 8.52e-01 120 chr3R:13849409-13849529 9.55e-01 120 chrX:10728199-10728319 3.00e-03 100_[+5(3.41e-06)]_12 chr2R:6144311-6144431 5.88e-03 38_[+3(9.08e-05)]_74 chr2L:8198847-8198967 1.06e-02 120 chr2R:12532879-12532999 1.26e-02 66_[+3(6.12e-05)]_46 chr2L:479358-479478 1.42e-04 82_[+3(4.48e-06)]_30 chr3R:18742381-18742501 8.78e-01 120 chr3L:9972575-9972695 8.53e-01 120 chr3L:6495565-6495685 8.39e-02 120 chr2L:5288298-5288418 3.20e-02 120 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2.24e-02 87_[+1(5.68e-05)]_25 chr2L:19577267-19577387 3.63e-04 68_[+4(5.69e-06)]_44 chr2R:17625675-17625795 3.44e-01 120 chr2R:24591525-24591645 7.34e-01 120 chr3R:14729350-14729470 6.55e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************