******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/dpn.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:16544367-16544487 1.0000 120 chr2L:8528494-8528614 1.0000 120 chr3R:28677015-28677135 1.0000 120 chr3R:21993052-21993172 1.0000 120 chrX:3714179-3714299 1.0000 120 chr2R:21535553-21535673 1.0000 120 chrX:3019749-3019869 1.0000 120 chr3L:13411166-13411286 1.0000 120 chr2R:21709639-21709759 1.0000 120 chrX:3109037-3109157 1.0000 120 chr3L:7013689-7013809 1.0000 120 chr2R:20257494-20257614 1.0000 120 chr3R:26121964-26122084 1.0000 120 chr3L:21821769-21821889 1.0000 120 chrX:19348962-19349082 1.0000 120 chr3L:11074637-11074757 1.0000 120 chr2L:2730014-2730134 1.0000 120 chr2L:10468598-10468718 1.0000 120 chr3L:20389125-20389245 1.0000 120 chrX:20507877-20507997 1.0000 120 chr3L:9838653-9838773 1.0000 120 chr3L:9370993-9371113 1.0000 120 chr3L:10899336-10899456 1.0000 120 chr2L:1150653-1150773 1.0000 120 chrX:6663313-6663433 1.0000 120 chrX:17820365-17820485 1.0000 120 chr2R:17870090-17870210 1.0000 120 chrX:2011736-2011856 1.0000 120 chrX:10600688-10600808 1.0000 120 chrX:7095060-7095180 1.0000 120 chr3R:17777035-17777155 1.0000 120 chr3L:4242609-4242729 1.0000 120 chrX:11081347-11081467 1.0000 120 chr2L:5543200-5543320 1.0000 120 chr3R:22664383-22664503 1.0000 120 chr3R:25004902-25005022 1.0000 120 chr2L:12063187-12063307 1.0000 120 chr2L:8982694-8982814 1.0000 120 chr3L:11429864-11429984 1.0000 120 chr3R:23722119-23722239 1.0000 120 chr3L:5554557-5554677 1.0000 120 chr2L:3472366-3472486 1.0000 120 chr2R:16551946-16552066 1.0000 120 chr3R:18585696-18585816 1.0000 120 chr2R:9820187-9820307 1.0000 120 chr3L:8763284-8763404 1.0000 120 chr3R:13078409-13078529 1.0000 120 chr2L:20890044-20890164 1.0000 120 chr3R:21850228-21850348 1.0000 120 chr3R:16919196-16919316 1.0000 120 chrX:13764559-13764679 1.0000 120 chr3R:23067520-23067640 1.0000 120 chr2L:14499272-14499392 1.0000 120 chr2L:13833086-13833206 1.0000 120 chr2L:20675969-20676089 1.0000 120 chr2L:15751146-15751266 1.0000 120 chr2L:11331753-11331873 1.0000 120 chr2L:5771287-5771407 1.0000 120 chr3L:6817093-6817213 1.0000 120 chr3L:2159052-2159172 1.0000 120 chr2L:10428703-10428823 1.0000 120 chrX:7162653-7162773 1.0000 120 chr3L:12336374-12336494 1.0000 120 chr3L:9066180-9066300 1.0000 120 chr2L:19867025-19867145 1.0000 120 chr3R:12350606-12350726 1.0000 120 chr3R:26436706-26436826 1.0000 120 chr3R:22039584-22039704 1.0000 120 chr2L:5043897-5044017 1.0000 120 chrX:5883531-5883651 1.0000 120 chr2L:10356628-10356748 1.0000 120 chr2L:11199167-11199287 1.0000 120 chr2R:15381264-15381384 1.0000 120 chr3L:11303937-11304057 1.0000 120 chr2L:5520107-5520227 1.0000 120 chr3R:26888502-26888622 1.0000 120 chr2L:6338724-6338844 1.0000 120 chr3R:29859926-29860046 1.0000 120 chr2R:17161007-17161127 1.0000 120 chr2R:16800212-16800332 1.0000 120 chrX:7617050-7617170 1.0000 120 chr2R:7815161-7815281 1.0000 120 chr3L:16571536-16571656 1.0000 120 chr3L:16955326-16955446 1.0000 120 chr2R:19127963-19128083 1.0000 120 chr2L:15248756-15248876 1.0000 120 chr2L:9763273-9763393 1.0000 120 chr3R:20948097-20948217 1.0000 120 chr3L:557384-557504 1.0000 120 chr3R:19024023-19024143 1.0000 120 chr3R:8984738-8984858 1.0000 120 chr2R:21507988-21508108 1.0000 120 chr3L:11334127-11334247 1.0000 120 chr2L:6698552-6698672 1.0000 120 chr3L:4825734-4825854 1.0000 120 chr2R:23652369-23652489 1.0000 120 chr3R:9065079-9065199 1.0000 120 chr2L:20715142-20715262 1.0000 120 chr2R:14906651-14906771 1.0000 120 chrX:2136477-2136597 1.0000 120 chr3L:13356190-13356310 1.0000 120 chr3R:18393543-18393663 1.0000 120 chr3R:15792565-15792685 1.0000 120 chr2L:19517457-19517577 1.0000 120 chr3R:10648945-10649065 1.0000 120 chr2R:24402714-24402834 1.0000 120 chr3L:11993153-11993273 1.0000 120 chr3R:30305018-30305138 1.0000 120 chr3L:6816363-6816483 1.0000 120 chr3R:16991917-16992037 1.0000 120 chr3R:16748678-16748798 1.0000 120 chr2L:3444905-3445025 1.0000 120 chr2L:17583127-17583247 1.0000 120 chrX:17751880-17752000 1.0000 120 chr3L:10745725-10745845 1.0000 120 chr3L:18822501-18822621 1.0000 120 chr3R:30195716-30195836 1.0000 120 chr3R:10564380-10564500 1.0000 120 chr3R:29997786-29997906 1.0000 120 chr3R:15472811-15472931 1.0000 120 chr3L:6743157-6743277 1.0000 120 chrX:14602663-14602783 1.0000 120 chr3R:15837208-15837328 1.0000 120 chr3R:10560713-10560833 1.0000 120 chr2R:20906673-20906793 1.0000 120 chr2L:10856605-10856725 1.0000 120 chr3R:26117729-26117849 1.0000 120 chr2R:16571734-16571854 1.0000 120 chr3L:3665470-3665590 1.0000 120 chr2L:7258215-7258335 1.0000 120 chrX:12466649-12466769 1.0000 120 chrX:20519177-20519297 1.0000 120 chr3L:7360431-7360551 1.0000 120 chr3L:16779742-16779862 1.0000 120 chr3R:6791466-6791586 1.0000 120 chr2R:7249105-7249225 1.0000 120 chr2R:11095295-11095415 1.0000 120 chrX:1944255-1944375 1.0000 120 chr2R:23176777-23176897 1.0000 120 chr3R:30058122-30058242 1.0000 120 chr3L:2372008-2372128 1.0000 120 chr2L:16709737-16709857 1.0000 120 chr3R:29869220-29869340 1.0000 120 chr2L:14094790-14094910 1.0000 120 chr3R:24830030-24830150 1.0000 120 chrX:2087639-2087759 1.0000 120 chr3L:13911767-13911887 1.0000 120 chr2R:18829756-18829876 1.0000 120 chr2R:14411676-14411796 1.0000 120 chr3R:4387601-4387721 1.0000 120 chrX:1236690-1236810 1.0000 120 chr2R:14618635-14618755 1.0000 120 chr3L:12062983-12063103 1.0000 120 chrX:4011000-4011120 1.0000 120 chr2R:14910040-14910160 1.0000 120 chr2R:8914086-8914206 1.0000 120 chr2R:25085533-25085653 1.0000 120 chr2L:10522655-10522775 1.0000 120 chr2L:10698134-10698254 1.0000 120 chr3L:18784702-18784822 1.0000 120 chr3R:14609360-14609480 1.0000 120 chr2R:24159391-24159511 1.0000 120 chr2L:4847311-4847431 1.0000 120 chr3L:5243376-5243496 1.0000 120 chr3R:30797461-30797581 1.0000 120 chr3L:4313413-4313533 1.0000 120 chr3R:5470811-5470931 1.0000 120 chr3R:18795417-18795537 1.0000 120 chr3L:7249395-7249515 1.0000 120 chr2R:13429213-13429333 1.0000 120 chr3R:9370524-9370644 1.0000 120 chrX:10768347-10768467 1.0000 120 chr3L:17486902-17487022 1.0000 120 chrX:9356392-9356512 1.0000 120 chr3R:18906487-18906607 1.0000 120 chr3L:9435472-9435592 1.0000 120 chr3R:26654684-26654804 1.0000 120 chr2L:13073886-13074006 1.0000 120 chr2L:20097268-20097388 1.0000 120 chrX:18923637-18923757 1.0000 120 chr3L:14545542-14545662 1.0000 120 chr2L:4810133-4810253 1.0000 120 chr3L:16615448-16615568 1.0000 120 chr2L:9938797-9938917 1.0000 120 chr3L:21841318-21841438 1.0000 120 chrX:14839866-14839986 1.0000 120 chr3L:7356466-7356586 1.0000 120 chr2L:8952725-8952845 1.0000 120 chr3R:5998454-5998574 1.0000 120 chrX:8132109-8132229 1.0000 120 chr3L:3853006-3853126 1.0000 120 chrX:13258858-13258978 1.0000 120 chr2R:15201393-15201513 1.0000 120 chr2R:10142315-10142435 1.0000 120 chr3L:10344148-10344268 1.0000 120 chr3R:28887942-28888062 1.0000 120 chr3R:21101811-21101931 1.0000 120 chr3R:24945033-24945153 1.0000 120 chrX:5309092-5309212 1.0000 120 chr3R:21671798-21671918 1.0000 120 chr2R:15931996-15932116 1.0000 120 chr2L:73227-73347 1.0000 120 chr2L:14458298-14458418 1.0000 120 chr2L:5325666-5325786 1.0000 120 chrX:3431852-3431972 1.0000 120 chrX:18869597-18869717 1.0000 120 chrX:956019-956139 1.0000 120 chr3R:21102023-21102143 1.0000 120 chr2R:9398810-9398930 1.0000 120 chrX:3134469-3134589 1.0000 120 chr3R:16469697-16469817 1.0000 120 chrX:12469971-12470091 1.0000 120 chr3R:29040632-29040752 1.0000 120 chr2R:7395959-7396079 1.0000 120 chr3L:5185298-5185418 1.0000 120 chr2R:20067286-20067406 1.0000 120 chr3R:17151786-17151906 1.0000 120 chr2L:19577308-19577428 1.0000 120 chr2R:17796671-17796791 1.0000 120 chr3R:19226638-19226758 1.0000 120 chrX:7728361-7728481 1.0000 120 chr3L:19687379-19687499 1.0000 120 chrX:13784571-13784691 1.0000 120 chr3R:29738045-29738165 1.0000 120 chr3R:24917899-24918019 1.0000 120 chr2L:14372403-14372523 1.0000 120 chr3L:1740245-1740365 1.0000 120 chrX:12909627-12909747 1.0000 120 chr3R:9260531-9260651 1.0000 120 chr3L:16567711-16567831 1.0000 120 chr2L:13366174-13366294 1.0000 120 chr3R:30796824-30796944 1.0000 120 chr3L:7348124-7348244 1.0000 120 chrX:2318467-2318587 1.0000 120 chr3L:8446153-8446273 1.0000 120 chr2R:8064434-8064554 1.0000 120 chr2R:24599798-24599918 1.0000 120 chr3R:30532144-30532264 1.0000 120 chr3L:16087628-16087748 1.0000 120 chrX:19667063-19667183 1.0000 120 chr2L:9503193-9503313 1.0000 120 chr2R:15511558-15511678 1.0000 120 chr2L:602470-602590 1.0000 120 chr3R:30191587-30191707 1.0000 120 chr3L:11680439-11680559 1.0000 120 chr2R:23898339-23898459 1.0000 120 chr3R:15408296-15408416 1.0000 120 chr3R:10134440-10134560 1.0000 120 chrX:13368274-13368394 1.0000 120 chr2R:9935938-9936058 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_dpn/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/dpn.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.325 C 0.182 G 0.177 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.325 C 0.182 G 0.177 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCACC MEME-1 width = 8 sites = 26 llr = 259 E-value = 6.8e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::9:2 pos.-specific C :a:8a177 probability G a:a2::1: matrix T ::::::22 bits 2.5 * * 2.2 *** * 2.0 *** * 1.7 ***** Relative 1.5 ***** Entropy 1.2 ****** (14.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23652369-23652489 57 2.03e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr3R:20948097-20948217 85 2.03e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr2R:16800212-16800332 8 2.03e-06 TGAACTA GCGCCACC TGAGACTGCA chr3R:12350606-12350726 41 2.03e-06 TGGAATAAGC GCGCCACC TACTGGCCGC chr3R:16919196-16919316 29 2.03e-06 CCGCCTTGCA GCGCCACC TGGCCTTGGT chr2R:16551946-16552066 59 2.03e-06 ATACAAAAGA GCGCCACC TAGAAAATAT chr2L:3472366-3472486 102 2.03e-06 TGTGCAGATG GCGCCACC ATGACGCGCG chrX:17820365-17820485 4 2.03e-06 CTG GCGCCACC TAGGTATGCT chr2L:602470-602590 1 7.54e-06 . GCGCCATC TGTTGTTCCC chr2R:25085533-25085653 40 7.54e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chr2L:7258215-7258335 98 7.54e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chr3L:16955326-16955446 39 7.54e-06 TTCCACAGTG GCGCCATC TGCAGTCGCA chr2L:73227-73347 85 1.30e-05 GTGTATAATG GCGCCACT GCGATTTTAA chr3L:7013689-7013809 103 1.30e-05 CCCAAAAGTG GCGCCACT TGGCCATCTG chr2L:4847311-4847431 14 1.78e-05 TTTTAGAGAT GCGCCACA GCTATCCAGA chrX:2087639-2087759 90 2.66e-05 ATGTAGGTCC GCGGCAGC GGGTGCTATT chr3L:6743157-6743277 56 2.66e-05 CACTAGAGAT GCGGCACT CGGGGCAAAG chrX:5883531-5883651 57 3.74e-05 CCGCCAGATG GCGGCACA GCATGAAATA chr3L:8763284-8763404 23 3.74e-05 GCTTTGATCG GCGGCACA TAATACAACA chr2R:21709639-21709759 22 3.74e-05 TTTTCTTCCG GCGGCACA GTGAACGCTC chr3R:5470811-5470931 71 4.28e-05 TAGCTAAAAG GCGCCAGT ACTAAATTGC chr2R:20906673-20906793 85 4.28e-05 ACGGTAGATG GCGCCAGT GCAACATTAA chr2L:5771287-5771407 58 4.28e-05 TTCTACAGCA GCGCCCTC TCACAGATTT chr3L:10899336-10899456 46 4.28e-05 TGTTGTAGTG GCGCCCTC TTTTGTTTTT chrX:11081347-11081467 90 5.93e-05 CCTTAATCAT GAGCCACC CAACTTCCGC chrX:7162653-7162773 39 6.31e-05 TGACCACCAA ACGCCACC TGTTGGCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23652369-23652489 2e-06 56_[+1]_56 chr3R:20948097-20948217 2e-06 84_[+1]_28 chr2R:16800212-16800332 2e-06 7_[+1]_105 chr3R:12350606-12350726 2e-06 40_[+1]_72 chr3R:16919196-16919316 2e-06 28_[+1]_84 chr2R:16551946-16552066 2e-06 58_[+1]_54 chr2L:3472366-3472486 2e-06 101_[+1]_11 chrX:17820365-17820485 2e-06 3_[+1]_109 chr2L:602470-602590 7.5e-06 [+1]_112 chr2R:25085533-25085653 7.5e-06 39_[+1]_73 chr2L:7258215-7258335 7.5e-06 97_[+1]_15 chr3L:16955326-16955446 7.5e-06 38_[+1]_74 chr2L:73227-73347 1.3e-05 84_[+1]_28 chr3L:7013689-7013809 1.3e-05 102_[+1]_10 chr2L:4847311-4847431 1.8e-05 13_[+1]_99 chrX:2087639-2087759 2.7e-05 89_[+1]_23 chr3L:6743157-6743277 2.7e-05 55_[+1]_57 chrX:5883531-5883651 3.7e-05 56_[+1]_56 chr3L:8763284-8763404 3.7e-05 22_[+1]_90 chr2R:21709639-21709759 3.7e-05 21_[+1]_91 chr3R:5470811-5470931 4.3e-05 70_[+1]_42 chr2R:20906673-20906793 4.3e-05 84_[+1]_28 chr2L:5771287-5771407 4.3e-05 57_[+1]_55 chr3L:10899336-10899456 4.3e-05 45_[+1]_67 chrX:11081347-11081467 5.9e-05 89_[+1]_23 chrX:7162653-7162773 6.3e-05 38_[+1]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCACC width=8 seqs=26 chr2R:23652369-23652489 ( 57) GCGCCACC 1 chr3R:20948097-20948217 ( 85) GCGCCACC 1 chr2R:16800212-16800332 ( 8) GCGCCACC 1 chr3R:12350606-12350726 ( 41) GCGCCACC 1 chr3R:16919196-16919316 ( 29) GCGCCACC 1 chr2R:16551946-16552066 ( 59) GCGCCACC 1 chr2L:3472366-3472486 ( 102) GCGCCACC 1 chrX:17820365-17820485 ( 4) GCGCCACC 1 chr2L:602470-602590 ( 1) GCGCCATC 1 chr2R:25085533-25085653 ( 40) GCGCCATC 1 chr2L:7258215-7258335 ( 98) GCGCCATC 1 chr3L:16955326-16955446 ( 39) GCGCCATC 1 chr2L:73227-73347 ( 85) GCGCCACT 1 chr3L:7013689-7013809 ( 103) GCGCCACT 1 chr2L:4847311-4847431 ( 14) GCGCCACA 1 chrX:2087639-2087759 ( 90) GCGGCAGC 1 chr3L:6743157-6743277 ( 56) GCGGCACT 1 chrX:5883531-5883651 ( 57) GCGGCACA 1 chr3L:8763284-8763404 ( 23) GCGGCACA 1 chr2R:21709639-21709759 ( 22) GCGGCACA 1 chr3R:5470811-5470931 ( 71) GCGCCAGT 1 chr2R:20906673-20906793 ( 85) GCGCCAGT 1 chr2L:5771287-5771407 ( 58) GCGCCCTC 1 chr3L:10899336-10899456 ( 46) GCGCCCTC 1 chrX:11081347-11081467 ( 90) GAGCCACC 1 chrX:7162653-7162773 ( 39) ACGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 6.8e-009 -307 -1134 244 -1134 -307 240 -1134 -1134 -1134 -1134 250 -1134 -1134 215 12 -1134 -1134 245 -1134 -1134 151 -125 -1134 -1134 -1134 184 -62 -45 -108 184 -1134 -71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 6.8e-009 0.038462 0.000000 0.961538 0.000000 0.038462 0.961538 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.807692 0.192308 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.653846 0.115385 0.230769 0.153846 0.653846 0.000000 0.192308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 regular expression -------------------------------------------------------------------------------- GCGCCA[CT]C -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTGGCGC MEME-2 width = 8 sites = 23 llr = 225 E-value = 4.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 16:1:::: pos.-specific C :::::9:9 probability G 9439a1a: matrix T ::7::::1 bits 2.5 * * 2.2 * * 2.0 *** 1.7 * ***** Relative 1.5 * ***** Entropy 1.2 * ***** (14.1 bits) 1.0 * ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GATGGCGC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16800212-16800332 79 1.82e-06 ATTTCGTATA GGTGGCGC CACTTAAACT chr2R:9820187-9820307 55 1.82e-06 TTATCGGCTA GGTGGCGC TCTATTTCGA chr2R:21535553-21535673 50 1.82e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chr3R:16748678-16748798 54 5.16e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2L:3472366-3472486 50 5.16e-06 TTCAGATACA GATGGCGC TCACGCCAAT chr3R:23722119-23722239 49 5.16e-06 ATAGTCAACA GATGGCGC TCTAAAATCT chr3L:7356466-7356586 53 8.05e-06 GGATCCCGAA GAGGGCGC TTATCGATTT chrX:17751880-17752000 47 8.05e-06 TTCAAGAGTA GAGGGCGC CGCTTACTTT chr2L:5043897-5044017 6 8.05e-06 AGCGA GAGGGCGC ATGGCTCAGG chr3L:10899336-10899456 103 8.05e-06 ATAGCCGCTG GAGGGCGC TCATGTATAT chr2R:23652369-23652489 14 1.10e-05 AATTCAGAGT GCTGGCGC CATCCAGCTT chr2R:7395959-7396079 46 1.47e-05 AAAAAAGTAA GGTGGGGC TGCGAACCAA chr3R:19024023-19024143 4 1.47e-05 GCT GGTGGGGC AGAGTTGCCA chr3L:557384-557504 89 1.47e-05 ATTTGACGAC GACGGCGC CAAACTTCTC chr2L:6338724-6338844 8 1.78e-05 ACACATA GGTGGCGT GCTGGCATAG chr3L:9435472-9435592 56 2.88e-05 CTGGCGAGTC AGTGGCGC CTAGCCTAGC chr2L:1150653-1150773 48 2.88e-05 TTTGCAGTAG GGTAGCGC AATAAACTTA chr2L:2730014-2730134 5 2.88e-05 ATAC AGTGGCGC GTGTATCTAT chrX:5883531-5883651 83 3.46e-05 TAGTTCGCTA GATGGCGT CTTGCTAACG chr2L:5771287-5771407 98 3.46e-05 CTTTACGGTA GATGGCGT TATTCAAAGG chr2L:73227-73347 15 4.78e-05 CAATATACAC AATGGCGC CACTGTTGTT chr2R:7249105-7249225 19 6.53e-05 TCAGGCGGCG GAGAGCGC GGCTATAAAA chr3R:18585696-18585816 9 6.53e-05 CAATTTAA GAGAGCGC AGATCGCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16800212-16800332 1.8e-06 78_[+2]_34 chr2R:9820187-9820307 1.8e-06 54_[+2]_58 chr2R:21535553-21535673 1.8e-06 49_[+2]_63 chr3R:16748678-16748798 5.2e-06 53_[+2]_59 chr2L:3472366-3472486 5.2e-06 49_[+2]_63 chr3R:23722119-23722239 5.2e-06 48_[+2]_64 chr3L:7356466-7356586 8e-06 52_[+2]_60 chrX:17751880-17752000 8e-06 46_[+2]_66 chr2L:5043897-5044017 8e-06 5_[+2]_107 chr3L:10899336-10899456 8e-06 102_[+2]_10 chr2R:23652369-23652489 1.1e-05 13_[+2]_99 chr2R:7395959-7396079 1.5e-05 45_[+2]_67 chr3R:19024023-19024143 1.5e-05 3_[+2]_109 chr3L:557384-557504 1.5e-05 88_[+2]_24 chr2L:6338724-6338844 1.8e-05 7_[+2]_105 chr3L:9435472-9435592 2.9e-05 55_[+2]_57 chr2L:1150653-1150773 2.9e-05 47_[+2]_65 chr2L:2730014-2730134 2.9e-05 4_[+2]_108 chrX:5883531-5883651 3.5e-05 82_[+2]_30 chr2L:5771287-5771407 3.5e-05 97_[+2]_15 chr2L:73227-73347 4.8e-05 14_[+2]_98 chr2R:7249105-7249225 6.5e-05 18_[+2]_94 chr3R:18585696-18585816 6.5e-05 8_[+2]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGGCGC width=8 seqs=23 chr2R:16800212-16800332 ( 79) GGTGGCGC 1 chr2R:9820187-9820307 ( 55) GGTGGCGC 1 chr2R:21535553-21535673 ( 50) GGTGGCGC 1 chr3R:16748678-16748798 ( 54) GATGGCGC 1 chr2L:3472366-3472486 ( 50) GATGGCGC 1 chr3R:23722119-23722239 ( 49) GATGGCGC 1 chr3L:7356466-7356586 ( 53) GAGGGCGC 1 chrX:17751880-17752000 ( 47) GAGGGCGC 1 chr2L:5043897-5044017 ( 6) GAGGGCGC 1 chr3L:10899336-10899456 ( 103) GAGGGCGC 1 chr2R:23652369-23652489 ( 14) GCTGGCGC 1 chr2R:7395959-7396079 ( 46) GGTGGGGC 1 chr3R:19024023-19024143 ( 4) GGTGGGGC 1 chr3L:557384-557504 ( 89) GACGGCGC 1 chr2L:6338724-6338844 ( 8) GGTGGCGT 1 chr3L:9435472-9435592 ( 56) AGTGGCGC 1 chr2L:1150653-1150773 ( 48) GGTAGCGC 1 chr2L:2730014-2730134 ( 5) AGTGGCGC 1 chrX:5883531-5883651 ( 83) GATGGCGT 1 chr2L:5771287-5771407 ( 98) GATGGCGT 1 chr2L:73227-73347 ( 15) AATGGCGC 1 chr2R:7249105-7249225 ( 19) GAGAGCGC 1 chr3R:18585696-18585816 ( 9) GAGAGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 4.7e-005 -132 -1117 230 -1117 80 -207 114 -1117 -1117 -207 56 114 -132 -1117 230 -1117 -1117 -1117 250 -1117 -1117 232 -103 -1117 -1117 -1117 250 -1117 -1117 225 -1117 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.7e-005 0.130435 0.000000 0.869565 0.000000 0.565217 0.043478 0.391304 0.000000 0.000000 0.043478 0.260870 0.695652 0.130435 0.000000 0.869565 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.913043 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.869565 0.000000 0.130435 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- G[AG][TG]GGCGC -------------------------------------------------------------------------------- Time 13.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGCNG MEME-3 width = 8 sites = 24 llr = 224 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8::::32 pos.-specific C a::::a22 probability G ::a:a:26 matrix T :2:a::3: bits 2.5 * * ** 2.2 * * ** 2.0 * * ** 1.7 * **** Relative 1.5 * **** Entropy 1.2 * **** (13.5 bits) 1.0 ****** * 0.7 ****** * 0.5 ****** * 0.2 ****** * 0.0 -------- Multilevel CAGTGCTG consensus AA sequence CC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13429213-13429333 72 6.77e-06 TCTAAGTTTT CAGTGCCG ACTAAGTTAT chr3R:16748678-16748798 70 6.77e-06 GCATGCAACT CAGTGCCG CCATCTGACG chr3R:21850228-21850348 23 6.77e-06 GTAATTAGAA CAGTGCGG ACTCGGCCAA chr2R:15511558-15511678 79 1.27e-05 CCCACTGTGG CAGTGCTG CGAAGCGCCG chr3L:19687379-19687499 67 1.27e-05 CTGAACAGTC CAGTGCTG CAAGAGGCGC chr2L:19577308-19577428 44 1.27e-05 GCATAAAAAT CAGTGCTG TAAAGCGAAA chr3R:17151786-17151906 71 1.27e-05 AGCTGTTGCG CAGTGCTG GAAAGTGCCG chr2L:6338724-6338844 47 1.27e-05 GTTCCAACTC CAGTGCTG GAAAGTGCGC chr2L:12063187-12063307 13 1.89e-05 GTGGAGTTGA CAGTGCAG GTAAATTTAG chr3R:25004902-25005022 113 1.89e-05 TTATTTTTTC CAGTGCAG chr3L:3853006-3853126 104 2.58e-05 ATCATTTAGT CAGTGCGC ACTGTATTC chr2L:5520107-5520227 90 2.58e-05 GGCCATGTAT CAGTGCGC TCGAAAGCTG chr3R:29859926-29860046 49 3.20e-05 CGTTTAAGTA CAGTGCTC ACTATTGAAT chr3L:9838653-9838773 61 3.20e-05 AAAATGGGAA CAGTGCTC GCCATACCTA chr2L:20890044-20890164 75 3.83e-05 CATTTTCTTT CAGTGCAC CGATTCACCC chr2L:19517457-19517577 90 5.73e-05 GACAGTTCCA CTGTGCGG CGAAGCTTTT chr2L:10428703-10428823 41 5.73e-05 ACTTGAAGCA CTGTGCCG TTATCAAAAA chr3R:17777035-17777155 105 5.73e-05 GCTGCAACCA CTGTGCCG GGaacgga chr3L:9370993-9371113 39 5.73e-05 TTTGAGGTTA CAGTGCCA GCTGGAGATG chr2L:8528494-8528614 56 5.73e-05 GTCGGACAAG CAGTGCGA CTTGGGATGA chr2L:14094790-14094910 83 7.40e-05 ACACTGATAT CAGTGCTA AGCAGTGGCT chrX:14839866-14839986 86 9.12e-05 TGATTTTTCT CAGTGCAA GAATGATGAG chr2R:17161007-17161127 68 9.12e-05 TGTGGCCTTA CAGTGCAA ATATATGCAG chr2L:3472366-3472486 91 9.12e-05 CAAAGAGTGC CTGTGCAG ATGGCGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13429213-13429333 6.8e-06 71_[+3]_41 chr3R:16748678-16748798 6.8e-06 69_[+3]_43 chr3R:21850228-21850348 6.8e-06 22_[+3]_90 chr2R:15511558-15511678 1.3e-05 78_[+3]_34 chr3L:19687379-19687499 1.3e-05 66_[+3]_46 chr2L:19577308-19577428 1.3e-05 43_[+3]_69 chr3R:17151786-17151906 1.3e-05 70_[+3]_42 chr2L:6338724-6338844 1.3e-05 46_[+3]_66 chr2L:12063187-12063307 1.9e-05 12_[+3]_100 chr3R:25004902-25005022 1.9e-05 112_[+3] chr3L:3853006-3853126 2.6e-05 103_[+3]_9 chr2L:5520107-5520227 2.6e-05 89_[+3]_23 chr3R:29859926-29860046 3.2e-05 48_[+3]_64 chr3L:9838653-9838773 3.2e-05 60_[+3]_52 chr2L:20890044-20890164 3.8e-05 74_[+3]_38 chr2L:19517457-19517577 5.7e-05 89_[+3]_23 chr2L:10428703-10428823 5.7e-05 40_[+3]_72 chr3R:17777035-17777155 5.7e-05 104_[+3]_8 chr3L:9370993-9371113 5.7e-05 38_[+3]_74 chr2L:8528494-8528614 5.7e-05 55_[+3]_57 chr2L:14094790-14094910 7.4e-05 82_[+3]_30 chrX:14839866-14839986 9.1e-05 85_[+3]_27 chr2R:17161007-17161127 9.1e-05 67_[+3]_45 chr2L:3472366-3472486 9.1e-05 90_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGCNG width=8 seqs=24 chr2R:13429213-13429333 ( 72) CAGTGCCG 1 chr3R:16748678-16748798 ( 70) CAGTGCCG 1 chr3R:21850228-21850348 ( 23) CAGTGCGG 1 chr2R:15511558-15511678 ( 79) CAGTGCTG 1 chr3L:19687379-19687499 ( 67) CAGTGCTG 1 chr2L:19577308-19577428 ( 44) CAGTGCTG 1 chr3R:17151786-17151906 ( 71) CAGTGCTG 1 chr2L:6338724-6338844 ( 47) CAGTGCTG 1 chr2L:12063187-12063307 ( 13) CAGTGCAG 1 chr3R:25004902-25005022 ( 113) CAGTGCAG 1 chr3L:3853006-3853126 ( 104) CAGTGCGC 1 chr2L:5520107-5520227 ( 90) CAGTGCGC 1 chr3R:29859926-29860046 ( 49) CAGTGCTC 1 chr3L:9838653-9838773 ( 61) CAGTGCTC 1 chr2L:20890044-20890164 ( 75) CAGTGCAC 1 chr2L:19517457-19517577 ( 90) CTGTGCGG 1 chr2L:10428703-10428823 ( 41) CTGTGCCG 1 chr3R:17777035-17777155 ( 105) CTGTGCCG 1 chr3L:9370993-9371113 ( 39) CAGTGCCA 1 chr2L:8528494-8528614 ( 56) CAGTGCGA 1 chr2L:14094790-14094910 ( 83) CAGTGCTA 1 chrX:14839866-14839986 ( 86) CAGTGCAA 1 chr2R:17161007-17161127 ( 68) CAGTGCAA 1 chr2L:3472366-3472486 ( 91) CTGTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 1.3e+000 -1123 245 -1123 -1123 136 -1123 -1123 -92 -1123 -1123 250 -1123 -1123 -1123 -1123 166 -1123 -1123 250 -1123 -1123 245 -1123 -1123 -38 19 23 8 -64 19 172 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.3e+000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.208333 0.208333 0.333333 0.208333 0.208333 0.583333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCNG MEME-3 regular expression -------------------------------------------------------------------------------- CAGTGC[TACG][GAC] -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACACTG MEME-4 width = 8 sites = 13 llr = 137 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a8:7::: pos.-specific C a::a3a:: probability G ::2::::a matrix T ::::::a: bits 2.5 * * * * 2.2 * * * * 2.0 * * * * 1.7 * * *** Relative 1.5 ** * *** Entropy 1.2 ** * *** (15.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15408296-15408416 37 1.16e-05 CGACTGTGTG CAACACTG TTTTTGAGCA chrX:5309092-5309212 112 1.16e-05 TGCAGTTTAA CAACACTG C chr3R:28887942-28888062 41 1.16e-05 TTACTCTTAC CAACACTG TGCTACGACG chr3L:21841318-21841438 88 1.16e-05 GTGCACCTTA CAACACTG TCCATAGCTA chr3L:9435472-9435592 41 1.16e-05 AGGTGTTTTG CAACACTG GCGAGTCAGT chr3L:4313413-4313533 76 1.16e-05 GTATGCCTTA CAACACTG CCTGCATCAG chr2L:14094790-14094910 71 1.16e-05 TCGTGCTAGC CAACACTG ATATCAGTGC chr3R:9260531-9260651 91 1.81e-05 TGACCCCAAG CAACCCTG TTCATCACAT chrX:14602663-14602783 42 1.81e-05 TACATTTCTC CAACCCTG CGACACAGGC chr3L:18822501-18822621 88 1.81e-05 GCCCACTCGA CAACCCTG AGCAACAACA chr3R:18393543-18393663 29 2.44e-05 AAACAAGTCG CAGCACTG AGGGAAATAG chr2L:10428703-10428823 105 2.44e-05 AAAATATTTA CAGCACTG CCACACTG chrX:1236690-1236810 55 2.79e-05 TGTACACCTG CAGCCCTG ATTCGTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15408296-15408416 1.2e-05 36_[+4]_76 chrX:5309092-5309212 1.2e-05 111_[+4]_1 chr3R:28887942-28888062 1.2e-05 40_[+4]_72 chr3L:21841318-21841438 1.2e-05 87_[+4]_25 chr3L:9435472-9435592 1.2e-05 40_[+4]_72 chr3L:4313413-4313533 1.2e-05 75_[+4]_37 chr2L:14094790-14094910 1.2e-05 70_[+4]_42 chr3R:9260531-9260651 1.8e-05 90_[+4]_22 chrX:14602663-14602783 1.8e-05 41_[+4]_71 chr3L:18822501-18822621 1.8e-05 87_[+4]_25 chr3R:18393543-18393663 2.4e-05 28_[+4]_84 chr2L:10428703-10428823 2.4e-05 104_[+4]_8 chrX:1236690-1236810 2.8e-05 54_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACACTG width=8 seqs=13 chr3R:15408296-15408416 ( 37) CAACACTG 1 chrX:5309092-5309212 ( 112) CAACACTG 1 chr3R:28887942-28888062 ( 41) CAACACTG 1 chr3L:21841318-21841438 ( 88) CAACACTG 1 chr3L:9435472-9435592 ( 41) CAACACTG 1 chr3L:4313413-4313533 ( 76) CAACACTG 1 chr2L:14094790-14094910 ( 71) CAACACTG 1 chr3R:9260531-9260651 ( 91) CAACCCTG 1 chrX:14602663-14602783 ( 42) CAACCCTG 1 chr3L:18822501-18822621 ( 88) CAACCCTG 1 chr3R:18393543-18393663 ( 29) CAGCACTG 1 chr2L:10428703-10428823 ( 105) CAGCACTG 1 chrX:1236690-1236810 ( 55) CAGCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 2.4e+002 -1035 245 -1035 -1035 162 -1035 -1035 -1035 124 -1035 38 -1035 -1035 245 -1035 -1035 109 75 -1035 -1035 -1035 245 -1035 -1035 -1035 -1035 -1035 166 -1035 -1035 250 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.4e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.769231 0.000000 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 0.692308 0.307692 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACACTG MEME-4 regular expression -------------------------------------------------------------------------------- CA[AG]C[AC]CTG -------------------------------------------------------------------------------- Time 25.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGCG MEME-5 width = 8 sites = 2 llr = 28 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a::a: probability G aaa:aa:a matrix T :::::::: bits 2.5 ******** 2.2 ******** 2.0 ******** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7395959-7396079 3 1.02e-06 TC GGGCGGCG AAAATGTGCA chr3L:557384-557504 1 1.02e-06 . GGGCGGCG AGGCGGTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7395959-7396079 1e-06 2_[+5]_110 chr3L:557384-557504 1e-06 [+5]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGCG width=8 seqs=2 chr2R:7395959-7396079 ( 3) GGGCGGCG 1 chr3L:557384-557504 ( 1) GGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.2e+003 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 245 -765 -765 -765 -765 249 -765 -765 -765 249 -765 -765 245 -765 -765 -765 -765 249 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GGGCGGCG -------------------------------------------------------------------------------- Time 32.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16544367-16544487 8.11e-01 120 chr2L:8528494-8528614 5.91e-02 55_[+3(5.73e-05)]_57 chr3R:28677015-28677135 5.49e-01 120 chr3R:21993052-21993172 5.86e-01 120 chrX:3714179-3714299 9.68e-01 120 chr2R:21535553-21535673 5.86e-04 49_[+2(1.82e-06)]_63 chrX:3019749-3019869 5.64e-01 120 chr3L:13411166-13411286 6.08e-01 120 chr2R:21709639-21709759 7.52e-04 21_[+1(3.74e-05)]_91 chrX:3109037-3109157 9.89e-01 120 chr3L:7013689-7013809 4.43e-05 102_[+1(1.30e-05)]_10 chr2R:20257494-20257614 1.00e+00 120 chr3R:26121964-26122084 2.74e-01 120 chr3L:21821769-21821889 9.66e-01 120 chrX:19348962-19349082 4.08e-01 120 chr3L:11074637-11074757 9.90e-01 120 chr2L:2730014-2730134 4.23e-03 4_[+2(2.88e-05)]_108 chr2L:10468598-10468718 9.76e-01 120 chr3L:20389125-20389245 9.81e-01 120 chrX:20507877-20507997 4.02e-02 120 chr3L:9838653-9838773 4.42e-02 60_[+3(3.20e-05)]_52 chr3L:9370993-9371113 4.45e-03 [+2(8.68e-05)]_30_[+3(5.73e-05)]_74 chr3L:10899336-10899456 3.05e-04 41_[+2(2.88e-05)]_53_[+2(8.05e-06)]_\ 10 chr2L:1150653-1150773 8.89e-03 47_[+2(2.88e-05)]_65 chrX:6663313-6663433 8.35e-01 120 chrX:17820365-17820485 8.19e-03 3_[+1(2.03e-06)]_109 chr2R:17870090-17870210 7.52e-01 120 chrX:2011736-2011856 7.10e-01 120 chrX:10600688-10600808 5.55e-01 120 chrX:7095060-7095180 2.09e-01 120 chr3R:17777035-17777155 8.27e-02 104_[+3(5.73e-05)]_8 chr3L:4242609-4242729 4.11e-01 120 chrX:11081347-11081467 7.03e-02 89_[+1(5.93e-05)]_23 chr2L:5543200-5543320 9.34e-01 120 chr3R:22664383-22664503 1.77e-01 120 chr3R:25004902-25005022 7.27e-02 112_[+3(1.89e-05)] chr2L:12063187-12063307 7.87e-02 12_[+3(1.89e-05)]_100 chr2L:8982694-8982814 1.00e+00 120 chr3L:11429864-11429984 9.26e-01 120 chr3R:23722119-23722239 3.21e-02 48_[+2(5.16e-06)]_64 chr3L:5554557-5554677 2.57e-02 120 chr2L:3472366-3472486 5.34e-07 49_[+2(5.16e-06)]_33_[+3(9.12e-05)]_\ 3_[+1(2.03e-06)]_11 chr2R:16551946-16552066 2.99e-04 58_[+1(2.03e-06)]_54 chr3R:18585696-18585816 2.04e-02 8_[+2(6.53e-05)]_104 chr2R:9820187-9820307 8.44e-04 54_[+2(1.82e-06)]_58 chr3L:8763284-8763404 1.24e-02 22_[+1(3.74e-05)]_90 chr3R:13078409-13078529 1.95e-01 120 chr2L:20890044-20890164 9.55e-02 74_[+3(3.83e-05)]_38 chr3R:21850228-21850348 1.79e-02 22_[+3(6.77e-06)]_90 chr3R:16919196-16919316 6.04e-04 28_[+1(2.03e-06)]_84 chrX:13764559-13764679 9.99e-01 120 chr3R:23067520-23067640 9.99e-01 120 chr2L:14499272-14499392 9.06e-01 120 chr2L:13833086-13833206 8.96e-01 120 chr2L:20675969-20676089 7.40e-02 120 chr2L:15751146-15751266 7.09e-02 120 chr2L:11331753-11331873 9.89e-01 120 chr2L:5771287-5771407 6.92e-04 57_[+1(4.28e-05)]_32_[+2(3.46e-05)]_\ 15 chr3L:6817093-6817213 9.79e-01 120 chr3L:2159052-2159172 9.99e-01 120 chr2L:10428703-10428823 4.20e-03 40_[+3(5.73e-05)]_56_[+4(2.44e-05)]_\ 8 chrX:7162653-7162773 3.80e-03 38_[+1(6.31e-05)]_74 chr3L:12336374-12336494 2.65e-01 120 chr3L:9066180-9066300 3.75e-01 120 chr2L:19867025-19867145 4.60e-01 120 chr3R:12350606-12350726 1.75e-03 40_[+1(2.03e-06)]_72 chr3R:26436706-26436826 1.00e+00 120 chr3R:22039584-22039704 9.94e-01 120 chr2L:5043897-5044017 2.63e-02 5_[+2(8.05e-06)]_107 chrX:5883531-5883651 2.97e-04 56_[+1(3.74e-05)]_18_[+2(3.46e-05)]_\ 30 chr2L:10356628-10356748 9.54e-01 120 chr2L:11199167-11199287 2.68e-01 120 chr2R:15381264-15381384 4.72e-01 120 chr3L:11303937-11304057 9.82e-01 120 chr2L:5520107-5520227 2.65e-02 89_[+3(2.58e-05)]_23 chr3R:26888502-26888622 5.08e-01 120 chr2L:6338724-6338844 1.80e-05 7_[+2(1.78e-05)]_31_[+3(1.27e-05)]_\ 66 chr3R:29859926-29860046 2.82e-01 48_[+3(3.20e-05)]_64 chr2R:17161007-17161127 1.90e-01 67_[+3(9.12e-05)]_45 chr2R:16800212-16800332 1.39e-05 7_[+1(2.03e-06)]_63_[+2(1.82e-06)]_\ 34 chrX:7617050-7617170 8.37e-01 120 chr2R:7815161-7815281 3.00e-01 120 chr3L:16571536-16571656 7.84e-01 120 chr3L:16955326-16955446 1.96e-05 38_[+1(7.54e-06)]_74 chr2R:19127963-19128083 7.59e-01 120 chr2L:15248756-15248876 8.36e-01 120 chr2L:9763273-9763393 8.16e-01 120 chr3R:20948097-20948217 2.80e-03 84_[+1(2.03e-06)]_28 chr3L:557384-557504 2.03e-05 [+5(1.02e-06)]_80_[+2(1.47e-05)]_24 chr3R:19024023-19024143 9.09e-04 3_[+2(1.47e-05)]_109 chr3R:8984738-8984858 2.07e-01 120 chr2R:21507988-21508108 9.28e-01 120 chr3L:11334127-11334247 9.99e-01 120 chr2L:6698552-6698672 6.90e-01 120 chr3L:4825734-4825854 1.22e-02 5_[+1(9.24e-05)]_107 chr2R:23652369-23652489 3.25e-05 17_[+1(7.54e-06)]_31_[+1(2.03e-06)]_\ 56 chr3R:9065079-9065199 4.65e-01 120 chr2L:20715142-20715262 8.54e-01 120 chr2R:14906651-14906771 9.64e-01 120 chrX:2136477-2136597 1.67e-02 120 chr3L:13356190-13356310 1.18e-01 120 chr3R:18393543-18393663 2.94e-02 28_[+4(2.44e-05)]_84 chr3R:15792565-15792685 2.97e-01 120 chr2L:19517457-19517577 7.69e-03 91_[+5(3.86e-05)]_21 chr3R:10648945-10649065 2.28e-01 120 chr2R:24402714-24402834 7.90e-01 120 chr3L:11993153-11993273 1.82e-01 120 chr3R:30305018-30305138 7.02e-01 120 chr3L:6816363-6816483 9.55e-01 120 chr3R:16991917-16992037 8.72e-01 120 chr3R:16748678-16748798 1.53e-05 53_[+2(5.16e-06)]_8_[+3(6.77e-06)]_\ 43 chr2L:3444905-3445025 6.22e-01 120 chr2L:17583127-17583247 9.72e-01 120 chrX:17751880-17752000 2.20e-05 46_[+2(8.05e-06)]_66 chr3L:10745725-10745845 6.29e-01 120 chr3L:18822501-18822621 4.64e-02 87_[+4(1.81e-05)]_25 chr3R:30195716-30195836 1.33e-01 120 chr3R:10564380-10564500 7.21e-01 120 chr3R:29997786-29997906 1.97e-01 120 chr3R:15472811-15472931 9.99e-01 120 chr3L:6743157-6743277 2.29e-02 55_[+1(2.66e-05)]_57 chrX:14602663-14602783 3.10e-02 41_[+4(1.81e-05)]_71 chr3R:15837208-15837328 9.13e-01 120 chr3R:10560713-10560833 9.84e-01 120 chr2R:20906673-20906793 4.37e-05 80_[+2(5.16e-06)]_[+3(9.12e-05)]_24 chr2L:10856605-10856725 2.71e-01 120 chr3R:26117729-26117849 7.07e-01 120 chr2R:16571734-16571854 1.18e-02 99_[+4(6.32e-05)]_13 chr3L:3665470-3665590 5.33e-01 120 chr2L:7258215-7258335 1.23e-03 97_[+1(7.54e-06)]_15 chrX:12466649-12466769 8.38e-01 120 chrX:20519177-20519297 9.19e-01 120 chr3L:7360431-7360551 9.94e-02 120 chr3L:16779742-16779862 6.74e-01 120 chr3R:6791466-6791586 3.64e-01 120 chr2R:7249105-7249225 8.42e-05 10_[+5(3.86e-05)]_[+2(6.53e-05)]_94 chr2R:11095295-11095415 6.25e-01 120 chrX:1944255-1944375 1.01e-02 11_[+1(7.63e-05)]_101 chr2R:23176777-23176897 8.58e-01 120 chr3R:30058122-30058242 9.15e-01 120 chr3L:2372008-2372128 1.00e+00 120 chr2L:16709737-16709857 9.58e-01 120 chr3R:29869220-29869340 5.43e-01 120 chr2L:14094790-14094910 1.10e-03 70_[+4(1.16e-05)]_4_[+3(7.40e-05)]_\ 30 chr3R:24830030-24830150 1.55e-01 120 chrX:2087639-2087759 1.05e-02 89_[+1(2.66e-05)]_23 chr3L:13911767-13911887 6.54e-01 120 chr2R:18829756-18829876 1.90e-01 120 chr2R:14411676-14411796 9.45e-01 120 chr3R:4387601-4387721 4.67e-01 120 chrX:1236690-1236810 1.88e-02 54_[+4(2.79e-05)]_58 chr2R:14618635-14618755 6.13e-01 120 chr3L:12062983-12063103 7.05e-01 120 chrX:4011000-4011120 2.66e-01 120 chr2R:14910040-14910160 9.85e-01 120 chr2R:8914086-8914206 3.63e-02 120 chr2R:25085533-25085653 7.18e-04 39_[+1(7.54e-06)]_73 chr2L:10522655-10522775 9.76e-01 120 chr2L:10698134-10698254 9.96e-01 120 chr3L:18784702-18784822 2.62e-02 58_[+5(3.86e-05)]_54 chr3R:14609360-14609480 7.78e-01 120 chr2R:24159391-24159511 6.62e-02 120 chr2L:4847311-4847431 9.99e-03 13_[+1(1.78e-05)]_99 chr3L:5243376-5243496 4.59e-01 120 chr3R:30797461-30797581 9.91e-01 120 chr3L:4313413-4313533 4.26e-02 75_[+4(1.16e-05)]_37 chr3R:5470811-5470931 2.28e-03 70_[+1(4.28e-05)]_42 chr3R:18795417-18795537 3.99e-01 120 chr3L:7249395-7249515 9.98e-01 120 chr2R:13429213-13429333 8.68e-02 71_[+3(6.77e-06)]_41 chr3R:9370524-9370644 7.91e-02 120 chrX:10768347-10768467 2.59e-02 120 chr3L:17486902-17487022 2.46e-03 120 chrX:9356392-9356512 1.67e-01 120 chr3R:18906487-18906607 6.74e-01 120 chr3L:9435472-9435592 1.64e-04 40_[+4(1.16e-05)]_7_[+2(2.88e-05)]_\ 57 chr3R:26654684-26654804 2.21e-01 120 chr2L:13073886-13074006 5.17e-01 120 chr2L:20097268-20097388 5.59e-01 120 chrX:18923637-18923757 6.51e-01 120 chr3L:14545542-14545662 1.95e-01 120 chr2L:4810133-4810253 2.20e-01 120 chr3L:16615448-16615568 1.20e-02 120 chr2L:9938797-9938917 2.68e-01 120 chr3L:21841318-21841438 2.11e-02 87_[+4(1.16e-05)]_25 chrX:14839866-14839986 3.51e-01 85_[+3(9.12e-05)]_27 chr3L:7356466-7356586 5.20e-03 52_[+2(8.05e-06)]_60 chr2L:8952725-8952845 3.31e-01 120 chr3R:5998454-5998574 9.96e-01 120 chrX:8132109-8132229 8.15e-01 120 chr3L:3853006-3853126 9.47e-02 103_[+3(2.58e-05)]_9 chrX:13258858-13258978 1.00e+00 120 chr2R:15201393-15201513 6.25e-01 120 chr2R:10142315-10142435 2.81e-01 120 chr3L:10344148-10344268 8.97e-02 120 chr3R:28887942-28888062 5.07e-03 40_[+4(1.16e-05)]_72 chr3R:21101811-21101931 7.80e-01 120 chr3R:24945033-24945153 6.97e-01 120 chrX:5309092-5309212 7.95e-02 111_[+4(1.16e-05)]_1 chr3R:21671798-21671918 4.87e-01 120 chr2R:15931996-15932116 2.46e-01 120 chr2L:73227-73347 2.50e-04 18_[+1(1.30e-05)]_58_[+1(1.30e-05)]_\ 28 chr2L:14458298-14458418 5.04e-01 120 chr2L:5325666-5325786 6.12e-01 120 chrX:3431852-3431972 9.31e-01 120 chrX:18869597-18869717 6.84e-01 120 chrX:956019-956139 8.55e-01 120 chr3R:21102023-21102143 9.08e-01 120 chr2R:9398810-9398930 8.29e-01 120 chrX:3134469-3134589 4.70e-01 120 chr3R:16469697-16469817 9.46e-01 120 chrX:12469971-12470091 7.90e-01 120 chr3R:29040632-29040752 9.67e-01 120 chr2R:7395959-7396079 1.77e-05 2_[+5(1.02e-06)]_35_[+2(1.47e-05)]_\ 67 chr3L:5185298-5185418 1.72e-01 120 chr2R:20067286-20067406 9.80e-01 120 chr3R:17151786-17151906 4.65e-03 70_[+3(1.27e-05)]_42 chr2L:19577308-19577428 3.55e-03 43_[+3(1.27e-05)]_69 chr2R:17796671-17796791 2.68e-01 120 chr3R:19226638-19226758 8.93e-02 120 chrX:7728361-7728481 1.73e-02 120 chr3L:19687379-19687499 7.95e-03 66_[+3(1.27e-05)]_46 chrX:13784571-13784691 5.61e-01 120 chr3R:29738045-29738165 8.48e-01 120 chr3R:24917899-24918019 1.98e-01 120 chr2L:14372403-14372523 9.85e-01 120 chr3L:1740245-1740365 8.65e-01 120 chrX:12909627-12909747 5.82e-01 120 chr3R:9260531-9260651 1.17e-01 90_[+4(1.81e-05)]_22 chr3L:16567711-16567831 9.99e-01 120 chr2L:13366174-13366294 5.34e-01 120 chr3R:30796824-30796944 1.33e-01 120 chr3L:7348124-7348244 4.73e-01 120 chrX:2318467-2318587 9.98e-01 120 chr3L:8446153-8446273 3.54e-01 120 chr2R:8064434-8064554 9.98e-01 120 chr2R:24599798-24599918 5.58e-01 120 chr3R:30532144-30532264 6.93e-01 120 chr3L:16087628-16087748 9.55e-01 120 chrX:19667063-19667183 1.35e-01 120 chr2L:9503193-9503313 9.85e-01 120 chr2R:15511558-15511678 2.88e-03 78_[+3(1.27e-05)]_34 chr2L:602470-602590 2.77e-02 [+1(7.54e-06)]_112 chr3R:30191587-30191707 9.91e-01 120 chr3L:11680439-11680559 1.21e-01 120 chr2R:23898339-23898459 9.83e-01 120 chr3R:15408296-15408416 1.25e-03 36_[+4(1.16e-05)]_76 chr3R:10134440-10134560 1.30e-02 120 chrX:13368274-13368394 9.81e-01 120 chr2R:9935938-9936058 2.16e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************