******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/dmrt93B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:14917947-14918067 1.0000 120 chrX:1580387-1580507 1.0000 120 chr2R:6770079-6770199 1.0000 120 chr3L:9033634-9033754 1.0000 120 chr3R:21896051-21896171 1.0000 120 chr3R:14451182-14451302 1.0000 120 chr3R:14398039-14398159 1.0000 120 chr3R:20258106-20258226 1.0000 120 chr2R:9065347-9065467 1.0000 120 chrX:18256657-18256777 1.0000 120 chr3L:21108575-21108695 1.0000 120 chr3L:10709270-10709390 1.0000 120 chrX:4435379-4435499 1.0000 120 chrX:3444945-3445065 1.0000 120 chr2R:8025893-8026013 1.0000 120 chr2L:14400734-14400854 1.0000 120 chr2L:15463609-15463729 1.0000 120 chr2L:18805798-18805918 1.0000 120 chr3L:6369779-6369899 1.0000 120 chr2L:4797703-4797823 1.0000 120 chr3R:15588746-15588866 1.0000 120 chr3L:3778610-3778730 1.0000 120 chrX:2907255-2907375 1.0000 120 chr3L:3342740-3342860 1.0000 120 chr2R:11539345-11539465 1.0000 120 chr3R:28848038-28848158 1.0000 120 chr3L:5867054-5867174 1.0000 120 chr2L:18678361-18678481 1.0000 120 chr3R:17826025-17826145 1.0000 120 chrX:18273286-18273406 1.0000 120 chr3L:3691760-3691880 1.0000 120 chr3L:18947059-18947179 1.0000 120 chrX:6573972-6574092 1.0000 120 chr2R:24237476-24237596 1.0000 120 chr3L:7994072-7994192 1.0000 120 chr2L:526364-526484 1.0000 120 chr2R:6144376-6144496 1.0000 120 chrX:13539535-13539655 1.0000 120 chr3L:15188811-15188931 1.0000 120 chr3R:12344987-12345107 1.0000 120 chrX:9068236-9068356 1.0000 120 chr3L:8368783-8368903 1.0000 120 chr2L:3554024-3554144 1.0000 120 chrX:18272533-18272653 1.0000 120 chr3R:14399479-14399599 1.0000 120 chr2L:18864272-18864392 1.0000 120 chrX:12239537-12239657 1.0000 120 chr3L:17846743-17846863 1.0000 120 chrX:18540357-18540477 1.0000 120 chr3L:8460229-8460349 1.0000 120 chrX:17760655-17760775 1.0000 120 chr2L:16526727-16526847 1.0000 120 chr3L:17579283-17579403 1.0000 120 chr3L:8284770-8284890 1.0000 120 chr3R:17122942-17123062 1.0000 120 chr3R:5103763-5103883 1.0000 120 chr2L:5429217-5429337 1.0000 120 chr3R:24206020-24206140 1.0000 120 chr3R:16985656-16985776 1.0000 120 chr3R:7967465-7967585 1.0000 120 chr3R:4884034-4884154 1.0000 120 chr2L:16271177-16271297 1.0000 120 chr3L:3246963-3247083 1.0000 120 chr3R:21648609-21648729 1.0000 120 chr3L:12420608-12420728 1.0000 120 chrX:17121752-17121872 1.0000 120 chr2L:5904718-5904838 1.0000 120 chrX:2796762-2796882 1.0000 120 chr2R:24822673-24822793 1.0000 120 chr3L:6875203-6875323 1.0000 120 chr3R:23148530-23148650 1.0000 120 chr3L:15762208-15762328 1.0000 120 chr3L:10359544-10359664 1.0000 120 chr3L:2838364-2838484 1.0000 120 chr2L:1668880-1669000 1.0000 120 chr2L:17749126-17749246 1.0000 120 chr3R:29283367-29283487 1.0000 120 chr3L:13213163-13213283 1.0000 120 chrX:3147132-3147252 1.0000 120 chrX:19069503-19069623 1.0000 120 chr3L:20827379-20827499 1.0000 120 chrX:12923663-12923783 1.0000 120 chr3R:29279634-29279754 1.0000 120 chrX:2196248-2196368 1.0000 120 chr3R:9349532-9349652 1.0000 120 chr3R:31878417-31878537 1.0000 120 chr2L:18946354-18946474 1.0000 120 chrX:3437636-3437756 1.0000 120 chrX:13541061-13541181 1.0000 120 chrX:2648093-2648213 1.0000 120 chr3R:11154034-11154154 1.0000 120 chr3L:18193785-18193905 1.0000 120 chr2L:21020120-21020240 1.0000 120 chr3L:13488252-13488372 1.0000 120 chrX:2452892-2453012 1.0000 120 chr3L:9742417-9742537 1.0000 120 chr3L:6312389-6312509 1.0000 120 chr3L:7792363-7792483 1.0000 120 chrX:1320555-1320675 1.0000 120 chr3R:17202516-17202636 1.0000 120 chr3L:5851670-5851790 1.0000 120 chr3R:21649661-21649781 1.0000 120 chr3L:21738874-21738994 1.0000 120 chr2R:6517783-6517903 1.0000 120 chrX:3060219-3060339 1.0000 120 chr2L:9736204-9736324 1.0000 120 chr3L:1458175-1458295 1.0000 120 chrX:8491112-8491232 1.0000 120 chrX:8895124-8895244 1.0000 120 chr2L:651019-651139 1.0000 120 chr3L:11382780-11382900 1.0000 120 chr2R:16685790-16685910 1.0000 120 chr3L:14381622-14381742 1.0000 120 chr3L:5633736-5633856 1.0000 120 chr3L:21100584-21100704 1.0000 120 chr2R:23024268-23024388 1.0000 120 chr2R:11551107-11551227 1.0000 120 chrX:5608615-5608735 1.0000 120 chr3R:27171214-27171334 1.0000 120 chr3L:761825-761945 1.0000 120 chr3L:12725845-12725965 1.0000 120 chr3R:11859626-11859746 1.0000 120 chr3R:29762440-29762560 1.0000 120 chr3L:3423144-3423264 1.0000 120 chr3L:3074492-3074612 1.0000 120 chr3R:16151663-16151783 1.0000 120 chr3L:11365962-11366082 1.0000 120 chrX:5025391-5025511 1.0000 120 chr3L:5851893-5852013 1.0000 120 chr3R:18157574-18157694 1.0000 120 chr2R:24836740-24836860 1.0000 120 chr2R:22316559-22316679 1.0000 120 chr3R:31956397-31956517 1.0000 120 chrX:5044560-5044680 1.0000 120 chr2L:7574413-7574533 1.0000 120 chr3R:27205111-27205231 1.0000 120 chrX:8273900-8274020 1.0000 120 chr2L:12494010-12494130 1.0000 120 chr3R:18787369-18787489 1.0000 120 chr2R:6147658-6147778 1.0000 120 chr2L:17750262-17750382 1.0000 120 chr2L:15388403-15388523 1.0000 120 chr2L:11968785-11968905 1.0000 120 chr3L:15762959-15763079 1.0000 120 chr3R:14918159-14918279 1.0000 120 chr3R:13372096-13372216 1.0000 120 chr2R:7615555-7615675 1.0000 120 chr3L:15209067-15209187 1.0000 120 chrX:3390009-3390129 1.0000 120 chr2R:8174829-8174949 1.0000 120 chr2R:6556945-6557065 1.0000 120 chrX:14134016-14134136 1.0000 120 chr2R:9915262-9915382 1.0000 120 chr2R:13935297-13935417 1.0000 120 chr2L:17421561-17421681 1.0000 120 chrX:17807072-17807192 1.0000 120 chrX:10728205-10728325 1.0000 120 chrX:6574637-6574757 1.0000 120 chr2L:12823831-12823951 1.0000 120 chr3L:12016373-12016493 1.0000 120 chr3L:18030165-18030285 1.0000 120 chrX:18929532-18929652 1.0000 120 chr2L:18466310-18466430 1.0000 120 chrX:6030200-6030320 1.0000 120 chr2R:7093002-7093122 1.0000 120 chrX:16930478-16930598 1.0000 120 chr3L:2533092-2533212 1.0000 120 chrX:7300417-7300537 1.0000 120 chr2L:7323152-7323272 1.0000 120 chr3R:10579689-10579809 1.0000 120 chrX:2947526-2947646 1.0000 120 chr3R:15580873-15580993 1.0000 120 chr3L:18241029-18241149 1.0000 120 chr3L:7641674-7641794 1.0000 120 chr3L:2549086-2549206 1.0000 120 chrX:2788718-2788838 1.0000 120 chrX:17814919-17815039 1.0000 120 chr3R:31308945-31309065 1.0000 120 chr3L:6364357-6364477 1.0000 120 chr3R:13941522-13941642 1.0000 120 chrX:14750599-14750719 1.0000 120 chr3L:21594528-21594648 1.0000 120 chr3L:22910112-22910232 1.0000 120 chr3L:14055484-14055604 1.0000 120 chr2R:6969505-6969625 1.0000 120 chr2L:9438412-9438532 1.0000 120 chr2L:7376279-7376399 1.0000 120 chr3L:14610617-14610737 1.0000 120 chrX:12496990-12497110 1.0000 120 chr3R:14290155-14290275 1.0000 120 chrX:7491053-7491173 1.0000 120 chr3R:22194926-22195046 1.0000 120 chr2L:6022896-6023016 1.0000 120 chr3R:24206222-24206342 1.0000 120 chrX:17551128-17551248 1.0000 120 chrX:8667890-8668010 1.0000 120 chr3R:18742432-18742552 1.0000 120 chrX:18834533-18834653 1.0000 120 chrX:768085-768205 1.0000 120 chr3L:17506108-17506228 1.0000 120 chr2L:10616035-10616155 1.0000 120 chr3L:11298496-11298616 1.0000 120 chr3R:29076180-29076300 1.0000 120 chrX:13278199-13278319 1.0000 120 chr2L:18003127-18003247 1.0000 120 chrX:17879358-17879478 1.0000 120 chr2R:23022643-23022763 1.0000 120 chr3L:15209268-15209388 1.0000 120 chr3L:5863050-5863170 1.0000 120 chr3R:23496557-23496677 1.0000 120 chr3L:15670641-15670761 1.0000 120 chr2L:8855584-8855704 1.0000 120 chr3R:30280467-30280587 1.0000 120 chrX:9656495-9656615 1.0000 120 chr2L:3341686-3341806 1.0000 120 chr3R:19603137-19603257 1.0000 120 chr3R:21824162-21824282 1.0000 120 chr2R:14009445-14009565 1.0000 120 chrX:12760839-12760959 1.0000 120 chr3L:15258564-15258684 1.0000 120 chr3L:5819433-5819553 1.0000 120 chr3L:1087431-1087551 1.0000 120 chrX:5026170-5026290 1.0000 120 chr2R:24629548-24629668 1.0000 120 chrX:2336659-2336779 1.0000 120 chr3R:8116139-8116259 1.0000 120 chr3R:20765810-20765930 1.0000 120 chr3L:16024757-16024877 1.0000 120 chr2L:7973946-7974066 1.0000 120 chr3L:6359334-6359454 1.0000 120 chrX:10324869-10324989 1.0000 120 chr3L:20403646-20403766 1.0000 120 chr3R:29538578-29538698 1.0000 120 chr3L:6285511-6285631 1.0000 120 chrX:7535063-7535183 1.0000 120 chr3R:15596001-15596121 1.0000 120 chr2R:12951582-12951702 1.0000 120 chr3R:19283601-19283721 1.0000 120 chr2L:18003716-18003836 1.0000 120 chr3L:19557241-19557361 1.0000 120 chr3L:12409070-12409190 1.0000 120 chr2L:7909269-7909389 1.0000 120 chr3R:6397788-6397908 1.0000 120 chr3L:11322615-11322735 1.0000 120 chr3R:30689799-30689919 1.0000 120 chr2L:7419482-7419602 1.0000 120 chr3R:4232592-4232712 1.0000 120 chr3L:14564565-14564685 1.0000 120 chr2R:19647750-19647870 1.0000 120 chr3R:8142265-8142385 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_dmrt93B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/dmrt93B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.346 C 0.161 G 0.159 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.346 C 0.161 G 0.159 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAGTGCA MEME-1 width = 8 sites = 28 llr = 257 E-value = 6.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::6::::8 pos.-specific C 3a::1:a: probability G 7:1a2a:: matrix T ::3:7::2 bits 2.7 ** 2.4 * * ** 2.1 * * ** 1.9 * * ** Relative 1.6 ** * ** Entropy 1.3 ** * ** (13.3 bits) 1.1 ** * ** 0.8 ** * *** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCAGTGCA consensus C T G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6397788-6397908 48 4.17e-06 ctactcagtt gcagtgca agggagaaac chr2L:18003716-18003836 38 4.17e-06 GCAGATTTTT GCAGTGCA TCAACTGGCA chr3L:18193785-18193905 107 4.17e-06 AACCTTTTGA GCAGTGCA GGGTAC chrX:19069503-19069623 110 4.17e-06 GCATTTTTTC GCAGTGCA TAA chrX:2907255-2907375 94 4.17e-06 AATATTTCTC GCAGTGCA TTGGTGGGGC chr3L:21594528-21594648 25 8.06e-06 AAAGAAATAA GCGGTGCA CTGTCCCGCT chr2R:8174829-8174949 85 8.06e-06 TTGTTAATCT GCGGTGCA TTAACCTGGC chrX:13541061-13541181 94 1.21e-05 ACTATTTCTC GCTGTGCA GCGGCAACAC chr3L:6875203-6875323 113 1.21e-05 TTAAGCCTTA GCTGTGCA chr2R:9915262-9915382 35 1.63e-05 GGTCATGTGG CCAGTGCA AATATTGGCG chr3L:5851893-5852013 86 1.63e-05 GAGCATCTGG CCAGTGCA ACAGACCCAT chr3L:3342740-3342860 20 1.72e-05 TAAGGGGTAT GCGGGGCA TATAAGGTGA chr3L:15188811-15188931 47 1.91e-05 AACTAGAGAT GCTGGGCA GCTTTTTATA chr2R:13935297-13935417 87 2.52e-05 AAAAAATTCT GCAGTGCT ATTCATATGT chrX:12239537-12239657 6 2.52e-05 ATTTT CCAGGGCA CTCAACTGGG chr2R:7615555-7615675 14 3.98e-05 CTATTATCAG GCCGTGCA ATGGGAGAAA chr3L:6285511-6285631 52 4.65e-05 AGAGATGAGT GCTGTGCT GATTGGATGT chr3L:5851670-5851790 2 4.65e-05 C GCGGCGCA AGATGCAAAT chrX:2796762-2796882 112 4.65e-05 TAGTACCCCA CCTGGGCA G chr2L:8855584-8855704 14 5.06e-05 CTTCGATGAT CCAGTGCT TGGGCTTTTA chrX:2648093-2648213 35 5.64e-05 CATTGATCTC CCAGCGCA GTGGAGCCAA chrX:2947526-2947646 93 5.82e-05 TCTTTTGGGC GCTGGGCT AAAAACAATT chrX:7300417-7300537 41 6.02e-05 GAACATGGCG CCAGGGCT GGCATATTAA chr3L:15670641-15670761 107 7.51e-05 ACAATCGCGA CCTGTGCT GCATTG chrX:768085-768205 99 7.51e-05 AGGGGGACGA GCAGAGCA AACATCGTGA chr3L:12016373-12016493 90 9.19e-05 TCCAGTGTCT GCACTGCA ATTACAGCGG chrX:2196248-2196368 30 9.19e-05 AGCCAGAACA GGAGTGCA ATCTAATCCC chr3L:20827379-20827499 111 1.16e-04 CGCATAAATC TCAGTGCA CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6397788-6397908 4.2e-06 47_[+1]_65 chr2L:18003716-18003836 4.2e-06 37_[+1]_75 chr3L:18193785-18193905 4.2e-06 106_[+1]_6 chrX:19069503-19069623 4.2e-06 109_[+1]_3 chrX:2907255-2907375 4.2e-06 93_[+1]_19 chr3L:21594528-21594648 8.1e-06 24_[+1]_88 chr2R:8174829-8174949 8.1e-06 84_[+1]_28 chrX:13541061-13541181 1.2e-05 93_[+1]_19 chr3L:6875203-6875323 1.2e-05 112_[+1] chr2R:9915262-9915382 1.6e-05 34_[+1]_78 chr3L:5851893-5852013 1.6e-05 85_[+1]_27 chr3L:3342740-3342860 1.7e-05 19_[+1]_93 chr3L:15188811-15188931 1.9e-05 46_[+1]_66 chr2R:13935297-13935417 2.5e-05 86_[+1]_26 chrX:12239537-12239657 2.5e-05 5_[+1]_107 chr2R:7615555-7615675 4e-05 13_[+1]_99 chr3L:6285511-6285631 4.7e-05 51_[+1]_61 chr3L:5851670-5851790 4.7e-05 1_[+1]_111 chrX:2796762-2796882 4.7e-05 111_[+1]_1 chr2L:8855584-8855704 5.1e-05 13_[+1]_99 chrX:2648093-2648213 5.6e-05 34_[+1]_78 chrX:2947526-2947646 5.8e-05 92_[+1]_20 chrX:7300417-7300537 6e-05 40_[+1]_72 chr3L:15670641-15670761 7.5e-05 106_[+1]_6 chrX:768085-768205 7.5e-05 98_[+1]_14 chr3L:12016373-12016493 9.2e-05 89_[+1]_23 chrX:2196248-2196368 9.2e-05 29_[+1]_83 chr3L:20827379-20827499 0.00012 110_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGTGCA width=8 seqs=28 chr3R:6397788-6397908 ( 48) GCAGTGCA 1 chr2L:18003716-18003836 ( 38) GCAGTGCA 1 chr3L:18193785-18193905 ( 107) GCAGTGCA 1 chrX:19069503-19069623 ( 110) GCAGTGCA 1 chrX:2907255-2907375 ( 94) GCAGTGCA 1 chr3L:21594528-21594648 ( 25) GCGGTGCA 1 chr2R:8174829-8174949 ( 85) GCGGTGCA 1 chrX:13541061-13541181 ( 94) GCTGTGCA 1 chr3L:6875203-6875323 ( 113) GCTGTGCA 1 chr2R:9915262-9915382 ( 35) CCAGTGCA 1 chr3L:5851893-5852013 ( 86) CCAGTGCA 1 chr3L:3342740-3342860 ( 20) GCGGGGCA 1 chr3L:15188811-15188931 ( 47) GCTGGGCA 1 chr2R:13935297-13935417 ( 87) GCAGTGCT 1 chrX:12239537-12239657 ( 6) CCAGGGCA 1 chr2R:7615555-7615675 ( 14) GCCGTGCA 1 chr3L:6285511-6285631 ( 52) GCTGTGCT 1 chr3L:5851670-5851790 ( 2) GCGGCGCA 1 chrX:2796762-2796882 ( 112) CCTGGGCA 1 chr2L:8855584-8855704 ( 14) CCAGTGCT 1 chrX:2648093-2648213 ( 35) CCAGCGCA 1 chrX:2947526-2947646 ( 93) GCTGGGCT 1 chrX:7300417-7300537 ( 41) CCAGGGCT 1 chr3L:15670641-15670761 ( 107) CCTGTGCT 1 chrX:768085-768205 ( 99) GCAGAGCA 1 chr3L:12016373-12016493 ( 90) GCACTGCA 1 chrX:2196248-2196368 ( 30) GGAGTGCA 1 chr3L:20827379-20827499 ( 111) TCAGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2004 E= 6.4e-003 -1145 82 210 -322 -1145 258 -215 -1145 72 -217 -15 -42 -1145 -217 260 -1145 -327 -118 43 102 -1145 -1145 265 -1145 -1145 263 -1145 -1145 118 -1145 -1145 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.4e-003 0.000000 0.285714 0.678571 0.035714 0.000000 0.964286 0.035714 0.000000 0.571429 0.035714 0.142857 0.250000 0.000000 0.035714 0.964286 0.000000 0.035714 0.071429 0.214286 0.678571 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.000000 0.000000 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-1 regular expression -------------------------------------------------------------------------------- [GC]C[AT]G[TG]GC[AT] -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGGCG MEME-2 width = 8 sites = 2 llr = 28 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::::a: probability G a:aaaa:a matrix T :a:::::: bits 2.7 * ****** 2.4 * ****** 2.1 * ****** 1.9 * ****** Relative 1.6 ******** Entropy 1.3 ******** (20.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8273900-8274020 23 8.69e-07 TGCCAACCGA GTGGGGCG CTAAAAATAC chrX:2907255-2907375 105 8.69e-07 CAGTGCATTG GTGGGGCG CAGCGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8273900-8274020 8.7e-07 22_[+2]_90 chrX:2907255-2907375 8.7e-07 104_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGGCG width=8 seqs=2 chrX:8273900-8274020 ( 23) GTGGGGCG 1 chrX:2907255-2907375 ( 105) GTGGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.6e+003 -765 -765 265 -765 -765 -765 -765 158 -765 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 263 -765 -765 -765 -765 265 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCG MEME-2 regular expression -------------------------------------------------------------------------------- GTGGGGCG -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCGGGC MEME-3 width = 8 sites = 2 llr = 28 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:::a probability G :aa:aaa: matrix T a::::::: bits 2.7 ******* 2.4 ******* 2.1 ******* 1.9 ******* Relative 1.6 ******** Entropy 1.3 ******** (20.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGCGGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9915262-9915382 48 8.80e-07 GTGCAAATAT TGGCGGGC GCGTTTACCC chr3L:2838364-2838484 112 8.80e-07 TAATATAAAA TGGCGGGC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9915262-9915382 8.8e-07 47_[+3]_65 chr3L:2838364-2838484 8.8e-07 111_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGGGC width=8 seqs=2 chr2R:9915262-9915382 ( 48) TGGCGGGC 1 chr3L:2838364-2838484 ( 112) TGGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.9e+003 -765 -765 -765 158 -765 -765 265 -765 -765 -765 265 -765 -765 263 -765 -765 -765 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 263 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGC MEME-3 regular expression -------------------------------------------------------------------------------- TGGCGGGC -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF GTDGGGGC MEME-4 width = 8 sites = 8 llr = 87 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C 11:::::a probability G 934a9aa: matrix T :64:1::: bits 2.7 * *** 2.4 * *** 2.1 * * *** 1.9 * ***** Relative 1.6 * ***** Entropy 1.3 * ***** (15.8 bits) 1.1 * ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGGGGC consensus GT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18864272-18864392 58 8.69e-07 CAAATAAGCT GTGGGGGC TGGGAGCGAA chr3L:3691760-3691880 16 1.28e-06 TATTCTGGTT GGGGGGGC ATTAGCAGCT chr3R:23148530-23148650 51 3.11e-06 TCTAAAAATA GTTGGGGC CATGATGATG chr3R:15580873-15580993 111 6.29e-06 GTTCCTTCAC GTAGGGGC GA chr2R:24836740-24836860 34 7.19e-06 GGACTAAGCA GGAGGGGC AGGATTTTTG chr3L:21594528-21594648 1 8.07e-06 . GCTGGGGC ACACTGAAAG chrX:2648093-2648213 110 1.21e-05 GCTGGTGTTT GTGGTGGC TTG chr2R:11551107-11551227 30 1.39e-05 AGTCTGTGCA CTTGGGGC ATTGCATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18864272-18864392 8.7e-07 57_[+4]_55 chr3L:3691760-3691880 1.3e-06 15_[+4]_97 chr3R:23148530-23148650 3.1e-06 50_[+4]_62 chr3R:15580873-15580993 6.3e-06 110_[+4]_2 chr2R:24836740-24836860 7.2e-06 33_[+4]_79 chr3L:21594528-21594648 8.1e-06 [+4]_112 chrX:2648093-2648213 1.2e-05 109_[+4]_3 chr2R:11551107-11551227 1.4e-05 29_[+4]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTDGGGGC width=8 seqs=8 chr2L:18864272-18864392 ( 58) GTGGGGGC 1 chr3L:3691760-3691880 ( 16) GGGGGGGC 1 chr3R:23148530-23148650 ( 51) GTTGGGGC 1 chr3R:15580873-15580993 ( 111) GTAGGGGC 1 chr2R:24836740-24836860 ( 34) GGAGGGGC 1 chr3L:21594528-21594648 ( 1) GCTGGGGC 1 chrX:2648093-2648213 ( 110) GTGGTGGC 1 chr2R:11551107-11551227 ( 30) CTTGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 4.9e+003 -965 -37 246 -965 -965 -37 65 90 -47 -965 124 17 -965 -965 265 -965 -965 -965 246 -141 -965 -965 265 -965 -965 -965 265 -965 -965 263 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.9e+003 0.000000 0.125000 0.875000 0.000000 0.000000 0.125000 0.250000 0.625000 0.250000 0.000000 0.375000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTDGGGGC MEME-4 regular expression -------------------------------------------------------------------------------- G[TG][GTA]GGGGC -------------------------------------------------------------------------------- Time 26.32 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGCCGCG MEME-5 width = 8 sites = 2 llr = 28 E-value = 9.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:aa:a: probability G ::a::a:a matrix T a::::::: bits 2.7 ******* 2.4 ******* 2.1 ******* 1.9 ******* Relative 1.6 ******** Entropy 1.3 ******** (20.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCGCCGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7967465-7967585 21 9.02e-07 TGAGCTAAAT TCGCCGCG AAAAATATAG chr3L:18947059-18947179 73 9.02e-07 TGAACTTGTC TCGCCGCG AGGGAGAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7967465-7967585 9e-07 20_[+5]_92 chr3L:18947059-18947179 9e-07 72_[+5]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGCCGCG width=8 seqs=2 chr3R:7967465-7967585 ( 21) TCGCCGCG 1 chr3L:18947059-18947179 ( 73) TCGCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.1e+003 -765 -765 -765 158 -765 263 -765 -765 -765 -765 265 -765 -765 263 -765 -765 -765 263 -765 -765 -765 -765 265 -765 -765 263 -765 -765 -765 -765 265 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.1e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCCGCG MEME-5 regular expression -------------------------------------------------------------------------------- TCGCCGCG -------------------------------------------------------------------------------- Time 32.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14917947-14918067 9.87e-01 120 chrX:1580387-1580507 1.64e-01 120 chr2R:6770079-6770199 1.00e+00 120 chr3L:9033634-9033754 1.00e+00 120 chr3R:21896051-21896171 9.80e-01 120 chr3R:14451182-14451302 4.60e-03 120 chr3R:14398039-14398159 4.70e-01 120 chr3R:20258106-20258226 6.20e-01 120 chr2R:9065347-9065467 1.50e-01 120 chrX:18256657-18256777 1.20e-04 62_[+4(4.35e-05)]_14_[+5(3.58e-05)]_\ 28 chr3L:21108575-21108695 1.00e+00 120 chr3L:10709270-10709390 6.05e-03 78_[+2(3.47e-05)]_34 chrX:4435379-4435499 9.55e-01 120 chrX:3444945-3445065 9.88e-01 120 chr2R:8025893-8026013 9.60e-01 120 chr2L:14400734-14400854 9.57e-01 120 chr2L:15463609-15463729 3.77e-01 120 chr2L:18805798-18805918 2.06e-01 120 chr3L:6369779-6369899 1.00e+00 120 chr2L:4797703-4797823 4.73e-01 120 chr3R:15588746-15588866 9.64e-01 120 chr3L:3778610-3778730 9.84e-01 120 chrX:2907255-2907375 8.39e-10 93_[+1(4.17e-06)]_3_[+2(8.69e-07)]_\ 8 chr3L:3342740-3342860 8.48e-05 19_[+1(1.72e-05)]_93 chr2R:11539345-11539465 5.55e-01 120 chr3R:28848038-28848158 9.99e-01 120 chr3L:5867054-5867174 9.96e-01 120 chr2L:18678361-18678481 6.80e-01 120 chr3R:17826025-17826145 9.21e-01 120 chrX:18273286-18273406 2.76e-01 120 chr3L:3691760-3691880 3.91e-07 15_[+4(1.28e-06)]_97 chr3L:18947059-18947179 4.62e-05 31_[+3(3.51e-05)]_33_[+5(9.02e-07)]_\ 40 chrX:6573972-6574092 1.00e+00 120 chr2R:24237476-24237596 9.95e-01 120 chr3L:7994072-7994192 1.00e+00 120 chr2L:526364-526484 9.93e-01 120 chr2R:6144376-6144496 9.86e-01 120 chrX:13539535-13539655 1.00e+00 120 chr3L:15188811-15188931 9.17e-03 46_[+1(1.91e-05)]_66 chr3R:12344987-12345107 4.45e-01 120 chrX:9068236-9068356 7.65e-01 120 chr3L:8368783-8368903 4.21e-01 120 chr2L:3554024-3554144 7.05e-01 120 chrX:18272533-18272653 8.99e-01 120 chr3R:14399479-14399599 4.16e-03 120 chr2L:18864272-18864392 9.80e-05 57_[+4(8.69e-07)]_7_[+4(9.04e-05)]_\ 40 chrX:12239537-12239657 2.25e-02 5_[+1(2.52e-05)]_107 chr3L:17846743-17846863 5.60e-01 120 chrX:18540357-18540477 1.00e+00 120 chr3L:8460229-8460349 5.17e-02 120 chrX:17760655-17760775 6.76e-02 25_[+4(3.50e-05)]_87 chr2L:16526727-16526847 9.98e-01 120 chr3L:17579283-17579403 2.20e-01 120 chr3L:8284770-8284890 9.79e-01 120 chr3R:17122942-17123062 9.70e-01 120 chr3R:5103763-5103883 4.59e-01 120 chr2L:5429217-5429337 1.39e-01 120 chr3R:24206020-24206140 7.67e-01 120 chr3R:16985656-16985776 1.00e+00 120 chr3R:7967465-7967585 2.88e-03 20_[+5(9.02e-07)]_92 chr3R:4884034-4884154 1.52e-01 120 chr2L:16271177-16271297 5.67e-01 120 chr3L:3246963-3247083 1.00e+00 120 chr3R:21648609-21648729 9.40e-01 120 chr3L:12420608-12420728 5.14e-01 120 chrX:17121752-17121872 2.83e-02 120 chr2L:5904718-5904838 4.84e-01 120 chrX:2796762-2796882 8.36e-02 111_[+1(4.65e-05)]_1 chr2R:24822673-24822793 9.17e-01 120 chr3L:6875203-6875323 3.01e-03 112_[+1(1.21e-05)] chr3R:23148530-23148650 1.37e-06 50_[+4(3.11e-06)]_10_[+2(3.47e-05)]_\ 44 chr3L:15762208-15762328 1.84e-01 120 chr3L:10359544-10359664 4.32e-01 120 chr3L:2838364-2838484 4.89e-05 111_[+3(8.80e-07)]_1 chr2L:1668880-1669000 3.30e-01 120 chr2L:17749126-17749246 5.11e-01 120 chr3R:29283367-29283487 1.69e-01 120 chr3L:13213163-13213283 1.00e+00 120 chrX:3147132-3147252 1.73e-01 120 chrX:19069503-19069623 5.92e-03 109_[+1(4.17e-06)]_3 chr3L:20827379-20827499 1.58e-01 120 chrX:12923663-12923783 1.00e+00 120 chr3R:29279634-29279754 9.99e-01 120 chrX:2196248-2196368 9.62e-02 29_[+1(9.19e-05)]_83 chr3R:9349532-9349652 1.72e-01 120 chr3R:31878417-31878537 6.14e-02 120 chr2L:18946354-18946474 3.04e-01 120 chrX:3437636-3437756 8.01e-02 120 chrX:13541061-13541181 5.90e-04 93_[+1(1.21e-05)]_19 chrX:2648093-2648213 1.03e-04 34_[+1(5.64e-05)]_67_[+4(1.21e-05)]_\ 3 chr3R:11154034-11154154 1.00e+00 120 chr3L:18193785-18193905 2.85e-02 106_[+1(4.17e-06)]_6 chr2L:21020120-21020240 1.67e-01 120 chr3L:13488252-13488372 4.97e-01 120 chrX:2452892-2453012 5.00e-01 120 chr3L:9742417-9742537 7.05e-01 120 chr3L:6312389-6312509 9.78e-01 120 chr3L:7792363-7792483 3.64e-01 120 chrX:1320555-1320675 2.76e-01 120 chr3R:17202516-17202636 9.97e-01 120 chr3L:5851670-5851790 2.90e-02 1_[+1(4.65e-05)]_111 chr3R:21649661-21649781 1.00e+00 120 chr3L:21738874-21738994 6.09e-01 120 chr2R:6517783-6517903 1.61e-01 120 chrX:3060219-3060339 5.58e-01 120 chr2L:9736204-9736324 5.71e-01 120 chr3L:1458175-1458295 9.98e-01 120 chrX:8491112-8491232 8.28e-01 120 chrX:8895124-8895244 3.02e-01 120 chr2L:651019-651139 8.39e-01 120 chr3L:11382780-11382900 9.72e-01 120 chr2R:16685790-16685910 2.12e-03 103_[+2(9.87e-05)]_9 chr3L:14381622-14381742 4.53e-01 120 chr3L:5633736-5633856 9.48e-01 120 chr3L:21100584-21100704 6.45e-01 120 chr2R:23024268-23024388 9.81e-01 120 chr2R:11551107-11551227 1.84e-03 29_[+4(1.39e-05)]_83 chrX:5608615-5608735 3.24e-01 120 chr3R:27171214-27171334 1.00e+00 120 chr3L:761825-761945 9.42e-01 120 chr3L:12725845-12725965 8.93e-01 120 chr3R:11859626-11859746 7.10e-01 120 chr3R:29762440-29762560 2.11e-01 120 chr3L:3423144-3423264 9.98e-01 120 chr3L:3074492-3074612 7.71e-01 120 chr3R:16151663-16151783 1.00e+00 120 chr3L:11365962-11366082 1.00e+00 120 chrX:5025391-5025511 4.23e-01 120 chr3L:5851893-5852013 8.92e-02 51_[+1(9.19e-05)]_26_[+1(1.63e-05)]_\ 27 chr3R:18157574-18157694 9.98e-01 120 chr2R:24836740-24836860 1.66e-04 33_[+4(7.19e-06)]_79 chr2R:22316559-22316679 3.04e-02 [+4(5.60e-05)]_112 chr3R:31956397-31956517 2.75e-01 120 chrX:5044560-5044680 1.90e-01 120 chr2L:7574413-7574533 5.72e-01 120 chr3R:27205111-27205231 8.42e-01 120 chrX:8273900-8274020 2.09e-05 22_[+2(8.69e-07)]_90 chr2L:12494010-12494130 6.07e-01 120 chr3R:18787369-18787489 9.53e-01 120 chr2R:6147658-6147778 1.00e+00 120 chr2L:17750262-17750382 2.36e-01 120 chr2L:15388403-15388523 9.93e-01 120 chr2L:11968785-11968905 8.81e-01 120 chr3L:15762959-15763079 2.34e-01 120 chr3R:14918159-14918279 9.98e-01 120 chr3R:13372096-13372216 5.05e-01 120 chr2R:7615555-7615675 3.77e-02 13_[+1(3.98e-05)]_99 chr3L:15209067-15209187 8.97e-01 120 chrX:3390009-3390129 6.10e-03 120 chr2R:8174829-8174949 1.38e-03 84_[+1(8.06e-06)]_28 chr2R:6556945-6557065 7.27e-01 120 chrX:14134016-14134136 5.74e-02 120 chr2R:9915262-9915382 1.55e-07 34_[+1(1.63e-05)]_5_[+3(8.80e-07)]_\ 65 chr2R:13935297-13935417 1.18e-01 86_[+1(2.52e-05)]_26 chr2L:17421561-17421681 5.28e-02 120 chrX:17807072-17807192 6.64e-01 120 chrX:10728205-10728325 3.95e-01 120 chrX:6574637-6574757 4.75e-01 120 chr2L:12823831-12823951 1.29e-01 120 chr3L:12016373-12016493 8.80e-03 89_[+1(9.19e-05)]_23 chr3L:18030165-18030285 2.57e-01 120 chrX:18929532-18929652 1.56e-01 120 chr2L:18466310-18466430 2.65e-01 120 chrX:6030200-6030320 1.51e-02 120 chr2R:7093002-7093122 6.96e-01 120 chrX:16930478-16930598 9.66e-01 120 chr3L:2533092-2533212 9.94e-01 120 chrX:7300417-7300537 9.44e-04 8_[+1(6.02e-05)]_24_[+1(6.02e-05)]_\ 72 chr2L:7323152-7323272 2.63e-01 120 chr3R:10579689-10579809 5.72e-01 120 chrX:2947526-2947646 3.73e-03 92_[+1(5.82e-05)]_20 chr3R:15580873-15580993 1.29e-03 110_[+4(6.29e-06)]_2 chr3L:18241029-18241149 9.81e-01 120 chr3L:7641674-7641794 9.99e-01 120 chr3L:2549086-2549206 6.14e-01 120 chrX:2788718-2788838 9.03e-01 120 chrX:17814919-17815039 1.00e+00 120 chr3R:31308945-31309065 2.25e-01 120 chr3L:6364357-6364477 9.91e-01 120 chr3R:13941522-13941642 1.90e-02 104_[+3(9.98e-05)]_8 chrX:14750599-14750719 2.62e-01 120 chr3L:21594528-21594648 2.32e-05 [+4(8.07e-06)]_16_[+1(8.06e-06)]_88 chr3L:22910112-22910232 2.48e-01 120 chr3L:14055484-14055604 1.00e+00 120 chr2R:6969505-6969625 1.00e+00 120 chr2L:9438412-9438532 2.72e-01 120 chr2L:7376279-7376399 3.94e-02 10_[+2(9.87e-05)]_102 chr3L:14610617-14610737 8.73e-01 120 chrX:12496990-12497110 7.87e-01 120 chr3R:14290155-14290275 2.26e-01 120 chrX:7491053-7491173 1.21e-01 120 chr3R:22194926-22195046 6.40e-01 120 chr2L:6022896-6023016 7.16e-01 120 chr3R:24206222-24206342 1.38e-01 35_[+3(3.51e-05)]_77 chrX:17551128-17551248 1.54e-01 120 chrX:8667890-8668010 1.35e-01 120 chr3R:18742432-18742552 3.83e-01 120 chrX:18834533-18834653 3.20e-01 120 chrX:768085-768205 3.27e-04 89_[+2(9.87e-05)]_1_[+1(7.51e-05)]_\ 14 chr3L:17506108-17506228 5.02e-01 120 chr2L:10616035-10616155 7.88e-01 120 chr3L:11298496-11298616 1.00e+00 120 chr3R:29076180-29076300 2.81e-01 120 chrX:13278199-13278319 6.24e-01 120 chr2L:18003127-18003247 1.00e+00 120 chrX:17879358-17879478 3.86e-01 120 chr2R:23022643-23022763 5.99e-01 120 chr3L:15209268-15209388 1.00e+00 120 chr3L:5863050-5863170 8.20e-01 120 chr3R:23496557-23496677 9.99e-01 120 chr3L:15670641-15670761 1.70e-01 106_[+1(7.51e-05)]_6 chr2L:8855584-8855704 3.66e-02 13_[+1(5.06e-05)]_99 chr3R:30280467-30280587 3.28e-01 55_[+4(5.60e-05)]_57 chrX:9656495-9656615 1.00e+00 120 chr2L:3341686-3341806 4.88e-01 120 chr3R:19603137-19603257 7.39e-01 120 chr3R:21824162-21824282 9.84e-01 120 chr2R:14009445-14009565 7.60e-01 120 chrX:12760839-12760959 6.44e-01 120 chr3L:15258564-15258684 9.58e-01 120 chr3L:5819433-5819553 9.93e-01 120 chr3L:1087431-1087551 1.00e+00 120 chrX:5026170-5026290 8.36e-01 120 chr2R:24629548-24629668 4.16e-01 120 chrX:2336659-2336779 6.27e-02 120 chr3R:8116139-8116259 1.78e-02 120 chr3R:20765810-20765930 1.24e-02 120 chr3L:16024757-16024877 5.42e-01 120 chr2L:7973946-7974066 9.22e-01 120 chr3L:6359334-6359454 9.93e-01 120 chrX:10324869-10324989 1.00e+00 120 chr3L:20403646-20403766 6.26e-02 120 chr3R:29538578-29538698 9.99e-01 120 chr3L:6285511-6285631 5.36e-03 51_[+1(4.65e-05)]_61 chrX:7535063-7535183 1.50e-01 120 chr3R:15596001-15596121 4.43e-01 120 chr2R:12951582-12951702 9.85e-01 120 chr3R:19283601-19283721 6.22e-02 120 chr2L:18003716-18003836 1.94e-02 37_[+1(4.17e-06)]_75 chr3L:19557241-19557361 3.53e-01 120 chr3L:12409070-12409190 9.98e-01 120 chr2L:7909269-7909389 1.07e-01 120 chr3R:6397788-6397908 1.34e-02 47_[+1(4.17e-06)]_65 chr3L:11322615-11322735 4.53e-01 120 chr3R:30689799-30689919 8.83e-01 120 chr2L:7419482-7419602 2.64e-01 120 chr3R:4232592-4232712 1.47e-01 120 chr3L:14564565-14564685 8.57e-02 120 chr2R:19647750-19647870 9.21e-01 120 chr3R:8142265-8142385 8.22e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************