******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/dmrt11E.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23196328-23196448 1.0000 120 chr2R:18963298-18963418 1.0000 120 chr3L:20685227-20685347 1.0000 120 chr2R:20027229-20027349 1.0000 120 chr3R:15587645-15587765 1.0000 120 chrX:16205257-16205377 1.0000 120 chr3L:18404463-18404583 1.0000 120 chr2R:11559271-11559391 1.0000 120 chr3R:29547703-29547823 1.0000 120 chrX:18207629-18207749 1.0000 120 chr3L:18430753-18430873 1.0000 120 chr3L:5817198-5817318 1.0000 120 chr3L:18367872-18367992 1.0000 120 chr2L:5433586-5433706 1.0000 120 chr3L:5017641-5017761 1.0000 120 chr3L:18425429-18425549 1.0000 120 chr2L:6210973-6211093 1.0000 120 chr2L:3853648-3853768 1.0000 120 chr3L:3882184-3882304 1.0000 120 chr2L:1470163-1470283 1.0000 120 chr2L:7292085-7292205 1.0000 120 chr3L:10962166-10962286 1.0000 120 chr2L:9990278-9990398 1.0000 120 chr2L:15316553-15316673 1.0000 120 chr2R:8585011-8585131 1.0000 120 chrX:12090331-12090451 1.0000 120 chrX:3083401-3083521 1.0000 120 chr3R:13881038-13881158 1.0000 120 chr2L:15465255-15465375 1.0000 120 chrX:4574063-4574183 1.0000 120 chr3L:11309853-11309973 1.0000 120 chrX:3344799-3344919 1.0000 120 chr3L:18229073-18229193 1.0000 120 chr2L:3685275-3685395 1.0000 120 chrX:18910959-18911079 1.0000 120 chr3R:16861356-16861476 1.0000 120 chr2L:14690953-14691073 1.0000 120 chr3L:18219523-18219643 1.0000 120 chr3R:31696774-31696894 1.0000 120 chrX:4459788-4459908 1.0000 120 chr3R:30222416-30222536 1.0000 120 chr2L:3844987-3845107 1.0000 120 chr3R:31706991-31707111 1.0000 120 chr2L:18298635-18298755 1.0000 120 chr3L:21727175-21727295 1.0000 120 chr2L:7302866-7302986 1.0000 120 chr3R:14586564-14586684 1.0000 120 chr3L:11413810-11413930 1.0000 120 chr3L:12062328-12062448 1.0000 120 chr3R:8189629-8189749 1.0000 120 chr3L:18290493-18290613 1.0000 120 chr3L:12063552-12063672 1.0000 120 chr3L:15353899-15354019 1.0000 120 chrX:17471705-17471825 1.0000 120 chr3R:16941451-16941571 1.0000 120 chr3L:15174980-15175100 1.0000 120 chr3L:1442471-1442591 1.0000 120 chr2R:19372508-19372628 1.0000 120 chr3L:20447573-20447693 1.0000 120 chrX:8671770-8671890 1.0000 120 chr2L:6240928-6241048 1.0000 120 chr3R:30734727-30734847 1.0000 120 chr3R:21566909-21567029 1.0000 120 chr2L:3819061-3819181 1.0000 120 chr3L:15802841-15802961 1.0000 120 chrX:9248191-9248311 1.0000 120 chr3L:18225071-18225191 1.0000 120 chr3R:6674704-6674824 1.0000 120 chr3R:11351435-11351555 1.0000 120 chr3L:6160016-6160136 1.0000 120 chrX:7122126-7122246 1.0000 120 chrX:17357599-17357719 1.0000 120 chr3L:6162141-6162261 1.0000 120 chr2L:11472134-11472254 1.0000 120 chr3R:29550072-29550192 1.0000 120 chrX:8670724-8670844 1.0000 120 chr2L:10351306-10351426 1.0000 120 chr3L:15672926-15673046 1.0000 120 chr3L:15777503-15777623 1.0000 120 chrX:3351090-3351210 1.0000 120 chr3L:20644811-20644931 1.0000 120 chr2L:1557119-1557239 1.0000 120 chr2L:14540004-14540124 1.0000 120 chr2L:18871860-18871980 1.0000 120 chr3L:14961177-14961297 1.0000 120 chr2L:3439632-3439752 1.0000 120 chr3L:6589797-6589917 1.0000 120 chr2L:15741516-15741636 1.0000 120 chrX:8669565-8669685 1.0000 120 chr3L:22157742-22157862 1.0000 120 chr2R:14312285-14312405 1.0000 120 chr2L:14497610-14497730 1.0000 120 chr2L:5378995-5379115 1.0000 120 chr3L:12590274-12590394 1.0000 120 chr3L:7958197-7958317 1.0000 120 chr3R:15580846-15580966 1.0000 120 chr3L:20687537-20687657 1.0000 120 chr3L:15330227-15330347 1.0000 120 chrX:13228318-13228438 1.0000 120 chrX:18208531-18208651 1.0000 120 chr3L:21455345-21455465 1.0000 120 chr2L:11347476-11347596 1.0000 120 chr3R:10651129-10651249 1.0000 120 chr3R:19343669-19343789 1.0000 120 chr3L:11031909-11032029 1.0000 120 chr3L:14974650-14974770 1.0000 120 chr2L:11346090-11346210 1.0000 120 chr3R:19935337-19935457 1.0000 120 chr3L:15670557-15670677 1.0000 120 chr2L:14483894-14484014 1.0000 120 chr3L:19187582-19187702 1.0000 120 chr3L:6820648-6820768 1.0000 120 chrX:696221-696341 1.0000 120 chr2L:8787762-8787882 1.0000 120 chr3R:27826309-27826429 1.0000 120 chr3L:3978092-3978212 1.0000 120 chrX:19014654-19014774 1.0000 120 chr3R:13469403-13469523 1.0000 120 chr3L:12444193-12444313 1.0000 120 chr3R:16630707-16630827 1.0000 120 chr3R:10370637-10370757 1.0000 120 chr2L:15315047-15315167 1.0000 120 chr3L:15199348-15199468 1.0000 120 chr2L:11341054-11341174 1.0000 120 chr2L:7298864-7298984 1.0000 120 chr3R:29273177-29273297 1.0000 120 chr3L:15203217-15203337 1.0000 120 chr3L:18357768-18357888 1.0000 120 chr3L:380946-381066 1.0000 120 chr3R:14589575-14589695 1.0000 120 chr3L:2862363-2862483 1.0000 120 chr3L:14152810-14152930 1.0000 120 chr2L:8959176-8959296 1.0000 120 chr2L:18896972-18897092 1.0000 120 chr2R:9200862-9200982 1.0000 120 chr3L:7953880-7954000 1.0000 120 chrX:19765050-19765170 1.0000 120 chr3R:10568651-10568771 1.0000 120 chrX:9295705-9295825 1.0000 120 chr2L:19219561-19219681 1.0000 120 chr3R:29696509-29696629 1.0000 120 chr3L:11303008-11303128 1.0000 120 chr2R:12020655-12020775 1.0000 120 chr2L:11980218-11980338 1.0000 120 chr3R:20548407-20548527 1.0000 120 chrX:12940038-12940158 1.0000 120 chrX:3073710-3073830 1.0000 120 chr2R:18585096-18585216 1.0000 120 chrX:4565082-4565202 1.0000 120 chr2L:3841096-3841216 1.0000 120 chr3L:18406039-18406159 1.0000 120 chr3L:21463007-21463127 1.0000 120 chr3R:6949423-6949543 1.0000 120 chr3R:21834410-21834530 1.0000 120 chr2L:7293569-7293689 1.0000 120 chr3L:12453637-12453757 1.0000 120 chr3R:16801200-16801320 1.0000 120 chr2L:14235130-14235250 1.0000 120 chrX:7166450-7166570 1.0000 120 chr2R:15760462-15760582 1.0000 120 chr2R:13617980-13618100 1.0000 120 chr3L:10849695-10849815 1.0000 120 chrX:457937-458057 1.0000 120 chrX:7552249-7552369 1.0000 120 chr3L:623709-623829 1.0000 120 chr3R:30733264-30733384 1.0000 120 chr2L:18895127-18895247 1.0000 120 chr3R:7135232-7135352 1.0000 120 chrX:9689269-9689389 1.0000 120 chr3R:8336281-8336401 1.0000 120 chr2R:8045850-8045970 1.0000 120 chr2L:10689545-10689665 1.0000 120 chr3R:8197265-8197385 1.0000 120 chrX:18523357-18523477 1.0000 120 chr3R:16033909-16034029 1.0000 120 chr3L:591480-591600 1.0000 120 chr2L:3600992-3601112 1.0000 120 chr3L:22162649-22162769 1.0000 120 chr3R:10354054-10354174 1.0000 120 chr3R:20291764-20291884 1.0000 120 chrX:12248993-12249113 1.0000 120 chrX:18946974-18947094 1.0000 120 chr3R:13404942-13405062 1.0000 120 chr2L:8842295-8842415 1.0000 120 chr2R:19794348-19794468 1.0000 120 chr3L:9033026-9033146 1.0000 120 chr3L:15315195-15315315 1.0000 120 chr3R:23303371-23303491 1.0000 120 chr2R:9703364-9703484 1.0000 120 chr3L:18227471-18227591 1.0000 120 chr3L:15232511-15232631 1.0000 120 chr3L:20623708-20623828 1.0000 120 chr3L:13068437-13068557 1.0000 120 chrX:11544669-11544789 1.0000 120 chr2L:5434392-5434512 1.0000 120 chr3R:16907928-16908048 1.0000 120 chr2L:18930908-18931028 1.0000 120 chrX:8665736-8665856 1.0000 120 chrX:17799208-17799328 1.0000 120 chr3L:7953045-7953165 1.0000 120 chrX:3394253-3394373 1.0000 120 chr3R:31689847-31689967 1.0000 120 chr3R:15650442-15650562 1.0000 120 chr3R:14041207-14041327 1.0000 120 chr3L:14971972-14972092 1.0000 120 chr3L:3873207-3873327 1.0000 120 chr3L:18225272-18225392 1.0000 120 chr2L:9586045-9586165 1.0000 120 chr2L:21020179-21020299 1.0000 120 chr2L:18809077-18809197 1.0000 120 chr2L:7624321-7624441 1.0000 120 chr3L:14611425-14611545 1.0000 120 chr3L:14166411-14166531 1.0000 120 chr3L:6834707-6834827 1.0000 120 chr3L:3843064-3843184 1.0000 120 chr3L:110097-110217 1.0000 120 chr3L:16013322-16013442 1.0000 120 chr2R:20572581-20572701 1.0000 120 chr3L:10536447-10536567 1.0000 120 chr3L:15794407-15794527 1.0000 120 chr3R:29541451-29541571 1.0000 120 chrX:5564042-5564162 1.0000 120 chr3R:17049053-17049173 1.0000 120 chr3L:18297476-18297596 1.0000 120 chr2L:6595174-6595294 1.0000 120 chr3R:19339348-19339468 1.0000 120 chr3R:30865612-30865732 1.0000 120 chr2L:3555804-3555924 1.0000 120 chr3L:19179550-19179670 1.0000 120 chrX:6982249-6982369 1.0000 120 chr3R:15664431-15664551 1.0000 120 chr3L:14953012-14953132 1.0000 120 chr3R:10498693-10498813 1.0000 120 chr2L:7541481-7541601 1.0000 120 chr3R:14386272-14386392 1.0000 120 chr3L:18329197-18329317 1.0000 120 chrX:19323180-19323300 1.0000 120 chr2L:5445974-5446094 1.0000 120 chr3L:15847449-15847569 1.0000 120 chr2L:5042261-5042381 1.0000 120 chr3R:26801566-26801686 1.0000 120 chr3R:30770230-30770350 1.0000 120 chr2L:7616952-7617072 1.0000 120 chr3L:19056980-19057100 1.0000 120 chrX:5969973-5970093 1.0000 120 chr2L:8552618-8552738 1.0000 120 chr2L:2461770-2461890 1.0000 120 chr3L:13049790-13049910 1.0000 120 chr2R:14969673-14969793 1.0000 120 chr2L:4055558-4055678 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_dmrt11E/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/dmrt11E.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.37 C 0.133 G 0.134 T 0.363 Background letter frequencies (from file dataset with add-one prior applied): A 0.37 C 0.133 G 0.134 T 0.363 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCACTGAR MEME-1 width = 8 sites = 13 llr = 135 E-value = 6.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::63 pos.-specific C 1a:9:1:1 probability G 9::1:926 matrix T ::::a:2: bits 2.9 * 2.6 ** * * 2.3 ** * * 2.0 ** * * Relative 1.7 ** * * Entropy 1.5 ****** (15.0 bits) 1.2 ****** * 0.9 ****** * 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGAG consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3843064-3843184 34 2.88e-06 TAGAAAACGA GCACTGGG AGAAATTCTT chr3R:14589575-14589695 41 2.88e-06 AAATACGTTT GCACTGGG AGAAATATTT chr3L:18367872-18367992 23 2.88e-06 TATTTTATCG GCACTGAG AAAAAACATG chr3R:6949423-6949543 1 4.96e-06 . GCACTGTG AAAAATATAG chr3L:19187582-19187702 10 4.96e-06 GTTCAGAGT GCACTGTG CAATGTCAGC chr2R:14969673-14969793 9 1.29e-05 CAGGGTGT GCACTGAA AAAAACACAA chr2R:20572581-20572701 62 1.29e-05 AATTAAAGAG GCACTGAA GATTCCTATG chr3L:110097-110217 54 1.29e-05 CATGTTTAAA GCACTGAA GAGAAAATAT chr2L:1470163-1470283 69 1.29e-05 CGACTTTTTT GCACTGAA AATCATGTGC chrX:17471705-17471825 37 1.58e-05 TTGTTTCAAT GCACTGGC ATTGTGAGCG chr3L:14971972-14972092 59 2.44e-05 CAACTACGCT GCAGTGAG TGTGGAATCT chr3L:20687537-20687657 94 2.44e-05 AATTTTAGCA CCACTGAG TGCACTAATA chr3R:31696774-31696894 2 2.44e-05 C GCACTCAG AAAAATAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3843064-3843184 2.9e-06 33_[+1]_79 chr3R:14589575-14589695 2.9e-06 40_[+1]_72 chr3L:18367872-18367992 2.9e-06 22_[+1]_90 chr3R:6949423-6949543 5e-06 [+1]_112 chr3L:19187582-19187702 5e-06 9_[+1]_103 chr2R:14969673-14969793 1.3e-05 8_[+1]_104 chr2R:20572581-20572701 1.3e-05 61_[+1]_51 chr3L:110097-110217 1.3e-05 53_[+1]_59 chr2L:1470163-1470283 1.3e-05 68_[+1]_44 chrX:17471705-17471825 1.6e-05 36_[+1]_76 chr3L:14971972-14972092 2.4e-05 58_[+1]_54 chr3L:20687537-20687657 2.4e-05 93_[+1]_19 chr3R:31696774-31696894 2.4e-05 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGAR width=8 seqs=13 chr3L:3843064-3843184 ( 34) GCACTGGG 1 chr3R:14589575-14589695 ( 41) GCACTGGG 1 chr3L:18367872-18367992 ( 23) GCACTGAG 1 chr3R:6949423-6949543 ( 1) GCACTGTG 1 chr3L:19187582-19187702 ( 10) GCACTGTG 1 chr2R:14969673-14969793 ( 9) GCACTGAA 1 chr2R:20572581-20572701 ( 62) GCACTGAA 1 chr3L:110097-110217 ( 54) GCACTGAA 1 chr2L:1470163-1470283 ( 69) GCACTGAA 1 chrX:17471705-17471825 ( 37) GCACTGGC 1 chr3L:14971972-14972092 ( 59) GCAGTGAG 1 chr3L:20687537-20687657 ( 94) CCACTGAG 1 chr3R:31696774-31696894 ( 2) GCACTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 6.6e+001 -1035 -79 278 -1035 -1035 291 -1035 -1035 143 -1035 -1035 -1035 -1035 280 -80 -1035 -1035 -1035 -1035 146 -1035 -79 278 -1035 73 -1035 78 -124 -27 -79 220 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.6e+001 0.000000 0.076923 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.076923 0.923077 0.000000 0.615385 0.000000 0.230769 0.153846 0.307692 0.076923 0.615385 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGAR MEME-1 regular expression -------------------------------------------------------------------------------- GCACTG[AG][GA] -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AKCSTGCC MEME-2 width = 8 sites = 10 llr = 110 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7::1:::: pos.-specific C ::a62:aa probability G :5:3:a:: matrix T 35::8::: bits 2.9 * *** 2.6 * *** 2.3 * *** 2.0 * *** Relative 1.7 * *** Entropy 1.5 ** *** (15.9 bits) 1.2 ******* 0.9 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGCCTGCC consensus TT GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14971972-14972092 37 7.55e-07 AGGACAGTGA AGCCTGCC AGAGCAACTA chr2L:5433586-5433706 108 7.55e-07 TCAGAGACTC AGCCTGCC TTTGG chr2L:6240928-6241048 71 2.53e-06 TAATGTGTCC TGCCTGCC TGCATGAGGT chr3R:10651129-10651249 19 4.58e-06 TACTAGTGAA ATCCTGCC ATAAGTGAAT chr3L:20685227-20685347 93 4.58e-06 TAGAGGGGAT ATCCTGCC TAACAGGATA chr3L:1442471-1442591 19 5.87e-06 AATCCCACTA ATCCCGCC AGTACACTTG chr3L:14974650-14974770 99 8.68e-06 AATTCTCAAG ATCGTGCC TCAAAGGACT chrX:3351090-3351210 5 1.10e-05 ACAG TGCGCGCC AATAGCTTAG chr3L:13049790-13049910 51 1.45e-05 ACTGTGTGGT TTCGTGCC ATATTTCGGT chr3L:2862363-2862483 108 1.66e-05 TATTTATGAA AGCATGCC CATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14971972-14972092 7.5e-07 36_[+2]_76 chr2L:5433586-5433706 7.5e-07 107_[+2]_5 chr2L:6240928-6241048 2.5e-06 70_[+2]_42 chr3R:10651129-10651249 4.6e-06 18_[+2]_94 chr3L:20685227-20685347 4.6e-06 92_[+2]_20 chr3L:1442471-1442591 5.9e-06 18_[+2]_94 chr3L:14974650-14974770 8.7e-06 98_[+2]_14 chrX:3351090-3351210 1.1e-05 4_[+2]_108 chr3L:13049790-13049910 1.4e-05 50_[+2]_62 chr3L:2862363-2862483 1.7e-05 107_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AKCSTGCC width=8 seqs=10 chr3L:14971972-14972092 ( 37) AGCCTGCC 1 chr2L:5433586-5433706 ( 108) AGCCTGCC 1 chr2L:6240928-6241048 ( 71) TGCCTGCC 1 chr3R:10651129-10651249 ( 19) ATCCTGCC 1 chr3L:20685227-20685347 ( 93) ATCCTGCC 1 chr3L:1442471-1442591 ( 19) ATCCCGCC 1 chr3L:14974650-14974770 ( 99) ATCGTGCC 1 chrX:3351090-3351210 ( 5) TGCGCGCC 1 chr3L:13049790-13049910 ( 51) TTCGTGCC 1 chr3L:2862363-2862483 ( 108) AGCATGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 3.7e+002 92 -997 -997 -28 -997 -997 190 46 -997 291 -997 -997 -188 218 116 -997 -997 59 -997 114 -997 -997 290 -997 -997 291 -997 -997 -997 291 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.7e+002 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.100000 0.600000 0.300000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCSTGCC MEME-2 regular expression -------------------------------------------------------------------------------- [AT][GT]C[CG][TC]GCC -------------------------------------------------------------------------------- Time 16.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCTAC MEME-3 width = 8 sites = 2 llr = 28 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C aaaaa::a probability G :::::::: matrix T :::::a:: bits 2.9 ***** * 2.6 ***** * 2.3 ***** * 2.0 ***** * Relative 1.7 ***** * Entropy 1.5 ******** (20.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCTAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21834410-21834530 110 7.43e-07 TCAGTGTACG CCCCCTAC CAC chr2L:11347476-11347596 11 7.43e-07 ACATCCCCTC CCCCCTAC CCATGACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21834410-21834530 7.4e-07 109_[+3]_3 chr2L:11347476-11347596 7.4e-07 10_[+3]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCTAC width=8 seqs=2 chr3R:21834410-21834530 ( 110) CCCCCTAC 1 chr2L:11347476-11347596 ( 11) CCCCCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.3e+003 -765 291 -765 -765 -765 291 -765 -765 -765 291 -765 -765 -765 291 -765 -765 -765 291 -765 -765 -765 -765 -765 146 143 -765 -765 -765 -765 291 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTAC MEME-3 regular expression -------------------------------------------------------------------------------- CCCCCTAC -------------------------------------------------------------------------------- Time 22.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAGTGC MEME-4 width = 8 sites = 2 llr = 28 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C aaa::::a probability G ::::a:a: matrix T :::::a:: bits 2.9 *** * ** 2.6 *** * ** 2.3 *** * ** 2.0 *** * ** Relative 1.7 *** * ** Entropy 1.5 ******** (20.3 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCAGTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9703364-9703484 113 7.55e-07 ATATTTTTCT CCCAGTGC chr2L:8787762-8787882 107 7.55e-07 ACTCAAATCT CCCAGTGC ATTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9703364-9703484 7.5e-07 112_[+4] chr2L:8787762-8787882 7.5e-07 106_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAGTGC width=8 seqs=2 chr2R:9703364-9703484 ( 113) CCCAGTGC 1 chr2L:8787762-8787882 ( 107) CCCAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.3e+003 -765 291 -765 -765 -765 291 -765 -765 -765 291 -765 -765 143 -765 -765 -765 -765 -765 289 -765 -765 -765 -765 146 -765 -765 289 -765 -765 291 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGTGC MEME-4 regular expression -------------------------------------------------------------------------------- CCCAGTGC -------------------------------------------------------------------------------- Time 28.34 secs. ******************************************************************************** ******************************************************************************** MOTIF SCSCATCS MEME-5 width = 8 sites = 4 llr = 48 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C 5a5a::a5 probability G 5:5::::5 matrix T :::::a:: bits 2.9 * * * 2.6 * * * 2.3 * * * 2.0 **** ** Relative 1.7 **** ** Entropy 1.5 ******** (17.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCATCC consensus G G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6949423-6949543 20 6.01e-06 AAAATATAGT GCGCATCG TATGCACTTT chr2L:11341054-11341174 20 6.01e-06 TACAATGGAG CCCCATCC TAAATACCCT chr3R:15587645-15587765 29 6.01e-06 AAAATGAACG CCGCATCG TTTAATCTCA chr2R:23196328-23196448 94 6.01e-06 TAAGTTATTC GCCCATCC TGACTAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6949423-6949543 6e-06 19_[+5]_93 chr2L:11341054-11341174 6e-06 19_[+5]_93 chr3R:15587645-15587765 6e-06 28_[+5]_84 chr2R:23196328-23196448 6e-06 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCSCATCS width=8 seqs=4 chr3R:6949423-6949543 ( 20) GCGCATCG 1 chr2L:11341054-11341174 ( 20) CCCCATCC 1 chr3R:15587645-15587765 ( 29) CCGCATCG 1 chr2R:23196328-23196448 ( 94) GCCCATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 2.1e+004 -865 191 190 -865 -865 291 -865 -865 -865 191 190 -865 -865 291 -865 -865 143 -865 -865 -865 -865 -865 -865 146 -865 291 -865 -865 -865 191 190 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.1e+004 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCSCATCS MEME-5 regular expression -------------------------------------------------------------------------------- [CG]C[CG]CATC[CG] -------------------------------------------------------------------------------- Time 34.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23196328-23196448 2.04e-03 93_[+5(6.01e-06)]_19 chr2R:18963298-18963418 6.81e-02 81_[+5(7.63e-05)]_31 chr3L:20685227-20685347 1.30e-02 92_[+2(4.58e-06)]_20 chr2R:20027229-20027349 5.79e-03 65_[+5(7.63e-05)]_47 chr3R:15587645-15587765 7.98e-04 28_[+5(6.01e-06)]_84 chrX:16205257-16205377 9.63e-01 120 chr3L:18404463-18404583 5.72e-01 120 chr2R:11559271-11559391 9.81e-01 120 chr3R:29547703-29547823 7.38e-01 120 chrX:18207629-18207749 9.79e-01 120 chr3L:18430753-18430873 9.90e-01 120 chr3L:5817198-5817318 5.34e-02 120 chr3L:18367872-18367992 3.76e-02 22_[+1(2.88e-06)]_90 chr2L:5433586-5433706 4.55e-05 107_[+2(7.55e-07)]_5 chr3L:5017641-5017761 9.21e-01 120 chr3L:18425429-18425549 6.60e-01 120 chr2L:6210973-6211093 1.92e-01 120 chr2L:3853648-3853768 9.99e-01 120 chr3L:3882184-3882304 6.25e-01 120 chr2L:1470163-1470283 1.70e-02 68_[+1(1.29e-05)]_44 chr2L:7292085-7292205 7.54e-01 120 chr3L:10962166-10962286 7.27e-01 120 chr2L:9990278-9990398 4.51e-01 120 chr2L:15316553-15316673 9.94e-01 120 chr2R:8585011-8585131 9.94e-01 120 chrX:12090331-12090451 9.52e-01 120 chrX:3083401-3083521 8.39e-01 120 chr3R:13881038-13881158 9.38e-01 120 chr2L:15465255-15465375 9.73e-01 120 chrX:4574063-4574183 4.70e-01 120 chr3L:11309853-11309973 9.98e-01 120 chrX:3344799-3344919 9.95e-01 120 chr3L:18229073-18229193 8.93e-01 120 chr2L:3685275-3685395 7.86e-01 120 chrX:18910959-18911079 5.73e-01 120 chr3R:16861356-16861476 4.51e-01 120 chr2L:14690953-14691073 1.00e+00 120 chr3L:18219523-18219643 7.60e-01 120 chr3R:31696774-31696894 1.07e-01 1_[+1(2.44e-05)]_111 chrX:4459788-4459908 7.67e-01 120 chr3R:30222416-30222536 2.24e-01 120 chr2L:3844987-3845107 9.43e-01 120 chr3R:31706991-31707111 6.57e-01 120 chr2L:18298635-18298755 4.89e-01 120 chr3L:21727175-21727295 5.55e-01 120 chr2L:7302866-7302986 9.27e-01 120 chr3R:14586564-14586684 2.22e-01 120 chr3L:11413810-11413930 5.38e-01 120 chr3L:12062328-12062448 6.30e-01 120 chr3R:8189629-8189749 9.41e-01 120 chr3L:18290493-18290613 4.43e-01 120 chr3L:12063552-12063672 8.46e-01 120 chr3L:15353899-15354019 1.47e-01 120 chrX:17471705-17471825 1.23e-01 36_[+1(1.58e-05)]_76 chr3R:16941451-16941571 9.67e-01 120 chr3L:15174980-15175100 9.79e-01 120 chr3L:1442471-1442591 2.90e-05 18_[+2(5.87e-06)]_81_[+1(6.22e-05)]_\ 5 chr2R:19372508-19372628 3.79e-01 120 chr3L:20447573-20447693 4.61e-02 120 chrX:8671770-8671890 2.56e-01 120 chr2L:6240928-6241048 9.92e-05 70_[+2(2.53e-06)]_42 chr3R:30734727-30734847 9.91e-01 120 chr3R:21566909-21567029 2.33e-01 120 chr2L:3819061-3819181 5.78e-01 120 chr3L:15802841-15802961 9.34e-03 120 chrX:9248191-9248311 5.55e-01 120 chr3L:18225071-18225191 9.11e-01 120 chr3R:6674704-6674824 4.98e-01 120 chr3R:11351435-11351555 8.99e-01 120 chr3L:6160016-6160136 9.99e-01 120 chrX:7122126-7122246 1.00e+00 120 chrX:17357599-17357719 1.03e-01 120 chr3L:6162141-6162261 1.00e+00 120 chr2L:11472134-11472254 4.90e-01 120 chr3R:29550072-29550192 8.54e-01 120 chrX:8670724-8670844 8.66e-01 120 chr2L:10351306-10351426 4.49e-01 120 chr3L:15672926-15673046 3.11e-01 120 chr3L:15777503-15777623 8.01e-02 120 chrX:3351090-3351210 2.40e-02 4_[+2(1.10e-05)]_108 chr3L:20644811-20644931 9.02e-01 120 chr2L:1557119-1557239 2.62e-01 120 chr2L:14540004-14540124 5.24e-01 120 chr2L:18871860-18871980 9.56e-01 120 chr3L:14961177-14961297 9.76e-01 120 chr2L:3439632-3439752 8.18e-01 120 chr3L:6589797-6589917 5.54e-02 120 chr2L:15741516-15741636 7.73e-01 120 chrX:8669565-8669685 4.12e-01 120 chr3L:22157742-22157862 7.08e-01 120 chr2R:14312285-14312405 5.10e-01 120 chr2L:14497610-14497730 8.40e-03 120 chr2L:5378995-5379115 6.98e-01 120 chr3L:12590274-12590394 5.00e-01 120 chr3L:7958197-7958317 4.70e-01 120 chr3R:15580846-15580966 9.45e-01 120 chr3L:20687537-20687657 3.14e-02 93_[+1(2.44e-05)]_19 chr3L:15330227-15330347 5.12e-01 120 chrX:13228318-13228438 6.31e-01 120 chrX:18208531-18208651 3.91e-01 120 chr3L:21455345-21455465 9.76e-01 120 chr2L:11347476-11347596 1.43e-04 10_[+3(7.43e-07)]_102 chr3R:10651129-10651249 3.64e-02 18_[+2(4.58e-06)]_94 chr3R:19343669-19343789 9.53e-01 120 chr3L:11031909-11032029 9.99e-01 120 chr3L:14974650-14974770 9.16e-06 36_[+2(9.05e-05)]_54_[+2(8.68e-06)]_\ 14 chr2L:11346090-11346210 8.94e-01 120 chr3R:19935337-19935457 8.95e-01 120 chr3L:15670557-15670677 4.25e-01 120 chr2L:14483894-14484014 8.43e-01 120 chr3L:19187582-19187702 1.89e-03 9_[+1(4.96e-06)]_103 chr3L:6820648-6820768 7.61e-01 120 chrX:696221-696341 9.95e-01 120 chr2L:8787762-8787882 1.60e-03 106_[+4(7.55e-07)]_6 chr3R:27826309-27826429 2.58e-01 120 chr3L:3978092-3978212 9.92e-01 120 chrX:19014654-19014774 9.43e-01 120 chr3R:13469403-13469523 4.00e-01 120 chr3L:12444193-12444313 4.05e-01 120 chr3R:16630707-16630827 6.20e-03 25_[+1(7.08e-05)]_87 chr3R:10370637-10370757 9.99e-01 120 chr2L:15315047-15315167 6.45e-01 120 chr3L:15199348-15199468 2.65e-01 120 chr2L:11341054-11341174 9.15e-04 19_[+5(6.01e-06)]_93 chr2L:7298864-7298984 1.10e-01 120 chr3R:29273177-29273297 9.68e-01 120 chr3L:15203217-15203337 2.67e-01 120 chr3L:18357768-18357888 1.14e-01 120 chr3L:380946-381066 1.17e-01 67_[+3(3.24e-05)]_45 chr3R:14589575-14589695 2.64e-03 40_[+1(2.88e-06)]_72 chr3L:2862363-2862483 1.04e-02 107_[+2(1.66e-05)]_5 chr3L:14152810-14152930 4.85e-01 120 chr2L:8959176-8959296 1.00e+00 120 chr2L:18896972-18897092 2.73e-01 120 chr2R:9200862-9200982 1.35e-02 120 chr3L:7953880-7954000 1.00e+00 120 chrX:19765050-19765170 9.80e-01 120 chr3R:10568651-10568771 9.56e-01 120 chrX:9295705-9295825 5.91e-02 110_[+4(3.28e-05)]_2 chr2L:19219561-19219681 4.07e-01 120 chr3R:29696509-29696629 7.37e-01 120 chr3L:11303008-11303128 2.49e-01 120 chr2R:12020655-12020775 9.78e-01 120 chr2L:11980218-11980338 9.95e-01 120 chr3R:20548407-20548527 1.62e-01 120 chrX:12940038-12940158 8.26e-01 120 chrX:3073710-3073830 4.92e-01 120 chr2R:18585096-18585216 5.99e-02 120 chrX:4565082-4565202 6.10e-01 120 chr2L:3841096-3841216 5.68e-01 120 chr3L:18406039-18406159 4.78e-01 120 chr3L:21463007-21463127 7.91e-01 120 chr3R:6949423-6949543 9.45e-05 [+1(4.96e-06)]_11_[+5(6.01e-06)]_93 chr3R:21834410-21834530 5.88e-05 109_[+3(7.43e-07)]_3 chr2L:7293569-7293689 1.53e-01 120 chr3L:12453637-12453757 1.00e+00 120 chr3R:16801200-16801320 5.55e-01 120 chr2L:14235130-14235250 8.39e-01 120 chrX:7166450-7166570 3.40e-01 111_[+1(6.22e-05)]_1 chr2R:15760462-15760582 9.91e-01 120 chr2R:13617980-13618100 7.37e-01 120 chr3L:10849695-10849815 2.77e-01 120 chrX:457937-458057 3.78e-02 120 chrX:7552249-7552369 8.73e-01 120 chr3L:623709-623829 1.17e-01 120 chr3R:30733264-30733384 9.47e-01 120 chr2L:18895127-18895247 9.53e-01 120 chr3R:7135232-7135352 9.54e-01 120 chrX:9689269-9689389 3.50e-02 120 chr3R:8336281-8336401 1.69e-01 120 chr2R:8045850-8045970 6.21e-01 120 chr2L:10689545-10689665 9.99e-01 120 chr3R:8197265-8197385 9.53e-01 120 chrX:18523357-18523477 6.03e-01 120 chr3R:16033909-16034029 9.71e-01 120 chr3L:591480-591600 2.45e-01 120 chr2L:3600992-3601112 1.18e-01 120 chr3L:22162649-22162769 9.77e-01 120 chr3R:10354054-10354174 3.16e-01 120 chr3R:20291764-20291884 9.04e-01 120 chrX:12248993-12249113 6.68e-02 120 chrX:18946974-18947094 3.89e-01 120 chr3R:13404942-13405062 9.80e-01 120 chr2L:8842295-8842415 1.79e-01 120 chr2R:19794348-19794468 9.96e-01 120 chr3L:9033026-9033146 2.58e-01 120 chr3L:15315195-15315315 6.02e-01 120 chr3R:23303371-23303491 3.32e-01 120 chr2R:9703364-9703484 2.95e-04 112_[+4(7.55e-07)] chr3L:18227471-18227591 7.87e-01 120 chr3L:15232511-15232631 1.00e+00 120 chr3L:20623708-20623828 9.96e-01 120 chr3L:13068437-13068557 9.57e-01 120 chrX:11544669-11544789 9.79e-01 120 chr2L:5434392-5434512 8.32e-01 120 chr3R:16907928-16908048 8.87e-01 120 chr2L:18930908-18931028 1.33e-01 120 chrX:8665736-8665856 5.96e-01 120 chrX:17799208-17799328 7.32e-01 120 chr3L:7953045-7953165 6.42e-01 120 chrX:3394253-3394373 9.30e-01 120 chr3R:31689847-31689967 4.85e-01 120 chr3R:15650442-15650562 9.48e-01 120 chr3R:14041207-14041327 7.53e-01 120 chr3L:14971972-14972092 1.20e-06 36_[+2(7.55e-07)]_14_[+1(2.44e-05)]_\ 54 chr3L:3873207-3873327 9.99e-01 120 chr3L:18225272-18225392 5.95e-01 120 chr2L:9586045-9586165 9.22e-01 120 chr2L:21020179-21020299 2.31e-02 120 chr2L:18809077-18809197 8.05e-01 120 chr2L:7624321-7624441 8.75e-01 120 chr3L:14611425-14611545 9.37e-01 120 chr3L:14166411-14166531 5.71e-02 120 chr3L:6834707-6834827 3.49e-01 120 chr3L:3843064-3843184 3.01e-02 33_[+1(2.88e-06)]_79 chr3L:110097-110217 1.50e-02 53_[+1(1.29e-05)]_59 chr3L:16013322-16013442 3.91e-01 120 chr2R:20572581-20572701 1.35e-01 61_[+1(1.29e-05)]_51 chr3L:10536447-10536567 9.89e-01 120 chr3L:15794407-15794527 8.98e-01 120 chr3R:29541451-29541571 2.59e-01 120 chrX:5564042-5564162 2.48e-01 120 chr3R:17049053-17049173 1.00e+00 120 chr3L:18297476-18297596 7.56e-01 120 chr2L:6595174-6595294 7.45e-01 120 chr3R:19339348-19339468 6.94e-01 120 chr3R:30865612-30865732 9.87e-01 120 chr2L:3555804-3555924 1.07e-01 120 chr3L:19179550-19179670 7.48e-01 120 chrX:6982249-6982369 1.00e+00 120 chr3R:15664431-15664551 4.06e-01 120 chr3L:14953012-14953132 1.00e+00 120 chr3R:10498693-10498813 5.05e-01 120 chr2L:7541481-7541601 9.66e-01 120 chr3R:14386272-14386392 1.02e-02 120 chr3L:18329197-18329317 9.99e-01 120 chrX:19323180-19323300 5.85e-01 120 chr2L:5445974-5446094 9.92e-01 120 chr3L:15847449-15847569 1.00e+00 120 chr2L:5042261-5042381 9.48e-01 120 chr3R:26801566-26801686 9.93e-01 120 chr3R:30770230-30770350 6.17e-03 120 chr2L:7616952-7617072 8.49e-01 120 chr3L:19056980-19057100 3.67e-01 120 chrX:5969973-5970093 2.06e-01 120 chr2L:8552618-8552738 3.86e-01 120 chr2L:2461770-2461890 9.43e-01 120 chr3L:13049790-13049910 1.96e-02 50_[+2(1.45e-05)]_62 chr2R:14969673-14969793 4.78e-02 8_[+1(1.29e-05)]_104 chr2L:4055558-4055678 5.43e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************