******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/dl.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:11842568-11842688 1.0000 120 chr2L:13509919-13510039 1.0000 120 chr3L:22851310-22851430 1.0000 120 chrX:1579063-1579183 1.0000 120 chr2L:20263214-20263334 1.0000 120 chr3R:29876363-29876483 1.0000 120 chr3R:28324963-28325083 1.0000 120 chr3R:14730836-14730956 1.0000 120 chr2R:21524935-21525055 1.0000 120 chr2L:9238137-9238257 1.0000 120 chrX:13272766-13272886 1.0000 120 chr3R:23296757-23296877 1.0000 120 chrX:1385997-1386117 1.0000 120 chr3L:9338038-9338158 1.0000 120 chr2L:1200126-1200246 1.0000 120 chr3L:7432945-7433065 1.0000 120 chr3R:6157249-6157369 1.0000 120 chr2L:16528598-16528718 1.0000 120 chrX:12745257-12745377 1.0000 120 chr2R:18514893-18515013 1.0000 120 chr3L:12407909-12408029 1.0000 120 chr2L:7796001-7796121 1.0000 120 chr2R:22308065-22308185 1.0000 120 chrX:16835506-16835626 1.0000 120 chrX:7068321-7068441 1.0000 120 chr3L:14619119-14619239 1.0000 120 chr2L:11184644-11184764 1.0000 120 chr3L:4167488-4167608 1.0000 120 chr2R:15482806-15482926 1.0000 120 chr3R:30827676-30827796 1.0000 120 chr3L:20733916-20734036 1.0000 120 chr2L:10757149-10757269 1.0000 120 chr2R:14361817-14361937 1.0000 120 chr2L:501784-501904 1.0000 120 chrX:17651327-17651447 1.0000 120 chr2R:24794163-24794283 1.0000 120 chr3L:18066489-18066609 1.0000 120 chr2R:7775783-7775903 1.0000 120 chr3R:9899690-9899810 1.0000 120 chr3R:5611320-5611440 1.0000 120 chr3R:16128607-16128727 1.0000 120 chr2R:8148553-8148673 1.0000 120 chr2R:11493993-11494113 1.0000 120 chr3L:15305321-15305441 1.0000 120 chrX:7285488-7285608 1.0000 120 chr2L:5107787-5107907 1.0000 120 chr2L:5078407-5078527 1.0000 120 chrX:2593445-2593565 1.0000 120 chr3R:7122260-7122380 1.0000 120 chr3L:21643832-21643952 1.0000 120 chr2R:18231220-18231340 1.0000 120 chrX:1562515-1562635 1.0000 120 chr2L:16689810-16689930 1.0000 120 chr2R:14139928-14140048 1.0000 120 chrX:2334175-2334295 1.0000 120 chr2R:15481250-15481370 1.0000 120 chr2L:18945906-18946026 1.0000 120 chrX:15501561-15501681 1.0000 120 chrX:11685739-11685859 1.0000 120 chr2R:18229816-18229936 1.0000 120 chr3R:8861081-8861201 1.0000 120 chrX:21067591-21067711 1.0000 120 chr2L:11966611-11966731 1.0000 120 chrX:18489693-18489813 1.0000 120 chr2R:12054859-12054979 1.0000 120 chrX:497540-497660 1.0000 120 chr3L:15684249-15684369 1.0000 120 chr3R:7969021-7969141 1.0000 120 chr3L:445908-446028 1.0000 120 chr3L:15510905-15511025 1.0000 120 chrX:5044179-5044299 1.0000 120 chr2R:5893664-5893784 1.0000 120 chr3R:18986387-18986507 1.0000 120 chr2R:17802557-17802677 1.0000 120 chr2R:8650083-8650203 1.0000 120 chrX:13625515-13625635 1.0000 120 chrX:10930697-10930817 1.0000 120 chr3R:18447534-18447654 1.0000 120 chr3L:4692247-4692367 1.0000 120 chrX:1562094-1562214 1.0000 120 chr3R:7966586-7966706 1.0000 120 chrX:8870150-8870270 1.0000 120 chr3R:19730575-19730695 1.0000 120 chrX:655660-655780 1.0000 120 chr3L:3257744-3257864 1.0000 120 chr3R:17702949-17703069 1.0000 120 chrX:1578624-1578744 1.0000 120 chr2R:24591172-24591292 1.0000 120 chrX:15501963-15502083 1.0000 120 chr3R:9501416-9501536 1.0000 120 chr3R:11458170-11458290 1.0000 120 chr3L:13182831-13182951 1.0000 120 chr2L:21012621-21012741 1.0000 120 chr3L:728338-728458 1.0000 120 chr2R:16386885-16387005 1.0000 120 chr2L:8129686-8129806 1.0000 120 chr2L:12288630-12288750 1.0000 120 chrX:18276865-18276985 1.0000 120 chr2R:8696257-8696377 1.0000 120 chr2L:12421901-12422021 1.0000 120 chr3R:13527051-13527171 1.0000 120 chr2R:5773140-5773260 1.0000 120 chr3L:8056433-8056553 1.0000 120 chrX:17561736-17561856 1.0000 120 chrX:17710890-17711010 1.0000 120 chrX:14947188-14947308 1.0000 120 chr3R:15131035-15131155 1.0000 120 chr3R:9501920-9502040 1.0000 120 chr3L:18186939-18187059 1.0000 120 chr2R:7477760-7477880 1.0000 120 chrX:1623313-1623433 1.0000 120 chr3R:4394302-4394422 1.0000 120 chr2L:18464039-18464159 1.0000 120 chr3L:881022-881142 1.0000 120 chr3R:13258816-13258936 1.0000 120 chr3L:21060296-21060416 1.0000 120 chr3L:3513554-3513674 1.0000 120 chr2L:11069313-11069433 1.0000 120 chr2R:8735699-8735819 1.0000 120 chr2L:16463800-16463920 1.0000 120 chr3R:9512332-9512452 1.0000 120 chr3L:8643923-8644043 1.0000 120 chr3R:14917655-14917775 1.0000 120 chr3L:16167837-16167957 1.0000 120 chr2R:6017015-6017135 1.0000 120 chr2R:12044562-12044682 1.0000 120 chrX:20656363-20656483 1.0000 120 chr3R:14852823-14852943 1.0000 120 chr2R:7146975-7147095 1.0000 120 chr2L:247583-247703 1.0000 120 chr3R:15901371-15901491 1.0000 120 chr3R:30843615-30843735 1.0000 120 chr2L:15109263-15109383 1.0000 120 chrX:395910-396030 1.0000 120 chr3L:392926-393046 1.0000 120 chr2R:7158270-7158390 1.0000 120 chr3R:18912927-18913047 1.0000 120 chrX:19127439-19127559 1.0000 120 chr3L:18952629-18952749 1.0000 120 chr3L:11369955-11370075 1.0000 120 chrX:14951556-14951676 1.0000 120 chr3R:13782730-13782850 1.0000 120 chr2R:8177680-8177800 1.0000 120 chr3R:21336529-21336649 1.0000 120 chrX:9284013-9284133 1.0000 120 chr2L:11968308-11968428 1.0000 120 chr3R:30272312-30272432 1.0000 120 chr3L:4692671-4692791 1.0000 120 chr3R:4807767-4807887 1.0000 120 chr3R:21460045-21460165 1.0000 120 chr3L:15304192-15304312 1.0000 120 chr3L:13474890-13475010 1.0000 120 chr3R:4667931-4668051 1.0000 120 chr3R:23869469-23869589 1.0000 120 chr3R:11200149-11200269 1.0000 120 chr3R:8090474-8090594 1.0000 120 chr2R:13991820-13991940 1.0000 120 chr2R:5999564-5999684 1.0000 120 chr2R:13992444-13992564 1.0000 120 chr3R:15476463-15476583 1.0000 120 chr3R:24767723-24767843 1.0000 120 chr3L:10759888-10760008 1.0000 120 chr3L:9053590-9053710 1.0000 120 chr2R:18344999-18345119 1.0000 120 chrX:18865025-18865145 1.0000 120 chr3L:3469617-3469737 1.0000 120 chr3R:21591416-21591536 1.0000 120 chrX:12471552-12471672 1.0000 120 chr3R:17681668-17681788 1.0000 120 chr3L:9380464-9380584 1.0000 120 chr3R:8316882-8317002 1.0000 120 chr3L:20317465-20317585 1.0000 120 chr2L:18444758-18444878 1.0000 120 chrX:1619772-1619892 1.0000 120 chr3R:21077719-21077839 1.0000 120 chr2R:7170958-7171078 1.0000 120 chrX:7697510-7697630 1.0000 120 chrX:11917244-11917364 1.0000 120 chr3R:24266883-24267003 1.0000 120 chr2R:10581511-10581631 1.0000 120 chrX:9118753-9118873 1.0000 120 chr3R:22526824-22526944 1.0000 120 chr3L:13904492-13904612 1.0000 120 chr2L:11182741-11182861 1.0000 120 chrX:12007703-12007823 1.0000 120 chrX:15163036-15163156 1.0000 120 chr2L:11175586-11175706 1.0000 120 chr2L:4370636-4370756 1.0000 120 chr3R:29935862-29935982 1.0000 120 chr2L:21019798-21019918 1.0000 120 chrM:8146-8266 1.0000 120 chr2R:13219276-13219396 1.0000 120 chr3L:20443036-20443156 1.0000 120 chrX:16621565-16621685 1.0000 120 chr2L:8012630-8012750 1.0000 120 chrX:17680222-17680342 1.0000 120 chr3R:15298123-15298243 1.0000 120 chr3R:11691079-11691199 1.0000 120 chr3R:4738990-4739110 1.0000 120 chr3L:21887006-21887126 1.0000 120 chrX:14946597-14946717 1.0000 120 chr2L:5376534-5376654 1.0000 120 chr3R:16316999-16317119 1.0000 120 chr2L:12545780-12545900 1.0000 120 chr3L:1325471-1325591 1.0000 120 chr2R:23722596-23722716 1.0000 120 chrX:12895461-12895581 1.0000 120 chr3R:8094016-8094136 1.0000 120 chr3R:17377696-17377816 1.0000 120 chr3L:10533695-10533815 1.0000 120 chrX:1610159-1610279 1.0000 120 chr3L:3436137-3436257 1.0000 120 chr3R:26098650-26098770 1.0000 120 chr3R:27201151-27201271 1.0000 120 chr2R:7145216-7145336 1.0000 120 chr3R:15094984-15095104 1.0000 120 chr3R:29064244-29064364 1.0000 120 chrM:13756-13876 1.0000 120 chr3R:16240596-16240716 1.0000 120 chr3L:18634781-18634901 1.0000 120 chr3L:20688562-20688682 1.0000 120 chr3L:18214077-18214197 1.0000 120 chr3R:20564106-20564226 1.0000 120 chr3L:20827070-20827190 1.0000 120 chr2R:6169055-6169175 1.0000 120 chr2R:10807399-10807519 1.0000 120 chr3L:12804469-12804589 1.0000 120 chr2R:6168348-6168468 1.0000 120 chr3R:30571006-30571126 1.0000 120 chr3L:760586-760706 1.0000 120 chr3R:31945009-31945129 1.0000 120 chr2R:15600414-15600534 1.0000 120 chr2L:3896150-3896270 1.0000 120 chr2R:14965527-14965647 1.0000 120 chrX:1947386-1947506 1.0000 120 chrX:1619207-1619327 1.0000 120 chr3L:9695439-9695559 1.0000 120 chr2R:17852361-17852481 1.0000 120 chr2R:21701304-21701424 1.0000 120 chr2R:22557227-22557347 1.0000 120 chrX:5965702-5965822 1.0000 120 chr3L:8151998-8152118 1.0000 120 chr3L:4148575-4148695 1.0000 120 chr3R:4174513-4174633 1.0000 120 chrX:10324470-10324590 1.0000 120 chr2L:16520615-16520735 1.0000 120 chr2R:16310405-16310525 1.0000 120 chr3R:7306826-7306946 1.0000 120 chr3L:7847796-7847916 1.0000 120 chr3R:18849362-18849482 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_dl/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/dl.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.243 G 0.245 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.243 G 0.245 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-1 width = 8 sites = 76 llr = 674 E-value = 2.4e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C a:9:a:92 probability G :211:1:: matrix T :7:9:918 bits 2.0 * * 1.8 * * * * 1.6 * *** * 1.4 * ***** Relative 1.2 * ****** Entropy 1.0 * ****** (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18849362-18849482 58 1.59e-05 ctctctctct ctctctct ttctctctcA chr3L:7847796-7847916 74 1.59e-05 CTCTCGCCCG CTCTCTCT GTGTGAGTAA chr2R:14965527-14965647 60 1.59e-05 agctggctcg ctctctct gtctctctca chr3L:12804469-12804589 34 1.59e-05 cccactctcc ctctctct ctctcacagt chrX:1610159-1610279 12 1.59e-05 AATTCTCACT CTCTCTCT CGCTCGCGCC chr3L:20443036-20443156 53 1.59e-05 ctctctctct ctctctct cgctctctct chrX:15163036-15163156 68 1.59e-05 ggctctctct ctctctct ctctctAGAG chrX:12007703-12007823 60 1.59e-05 ctctctccct ctctctct ctctgtcacg chr3L:13904492-13904612 93 1.59e-05 AGTTTCctct ctctctct gtctctctct chrX:9118753-9118873 36 1.59e-05 tttgctctct ctctctct ctcGTTCGCC chr3R:17681668-17681788 73 1.59e-05 ctctgctccg ctctctct tttgagctct chrX:12471552-12471672 5 1.59e-05 CGGC CTCTCTCT TTCCCGCTCC chr3R:21460045-21460165 55 1.59e-05 TGAGCGGCAA ctctctct ctctctcttg chr3L:392926-393046 67 1.59e-05 GGGTCTCTCC CTCTCTCT AGAGAGTCGT chrX:395910-396030 52 1.59e-05 TGCCGtcact ctctctct ctctttctct chr3R:9512332-9512452 65 1.59e-05 CAGATGCAGT CTCTCTCT CCGTACGCTT chr3R:13258816-13258936 108 1.59e-05 TACCATCTCT CTCTCTCT CTTTA chr3L:18186939-18187059 74 1.59e-05 ctctctctct ctctctct ctatttcctt chr3L:8056433-8056553 37 1.59e-05 CTCTTTATCG CTCTCTCT TGGAAAAGTT chr2R:5773140-5773260 54 1.59e-05 CACGctctct ctctctct ctctctctct chr2L:12288630-12288750 61 1.59e-05 tctttgctct ctctctct ctctcttgct chrX:10930697-10930817 76 1.59e-05 TCTTGTTGTG CTCTCTCT GTCGGCAACA chr2R:12054859-12054979 36 1.59e-05 cgctctctct ctctctct ctctctttgc chr2R:18229816-18229936 60 1.59e-05 ctcgttctct ctctctct ctcACGCAGA chr2R:14139928-14140048 74 1.59e-05 cactctctct ctctctct tccttttcgc chr2L:16689810-16689930 90 1.59e-05 Ttctctcttt ctctctct ctctTTGAAG chr2R:18231220-18231340 57 1.59e-05 TGTGctcttc ctctctct tcgctctccc chr3L:18066489-18066609 62 1.59e-05 ctctctttct ctctctct GCATAGAGCG chr2R:18514893-18515013 66 1.59e-05 ctctctctat ctctctct cAGGACAGAC chr3R:6157249-6157369 53 1.59e-05 ctctctctct ctctctct ctttctctTA chr2R:21701304-21701424 75 3.09e-05 CGCGCTCGCC CGCTCTCT CCTTATCGGT chrX:1619772-1619892 58 3.09e-05 AGCTTTCTAA CGCTctct cgctctggct chr3R:15476463-15476583 92 3.09e-05 AGCACTCGAA CGCTCTCT TAAGTGCGCC chr2R:13991820-13991940 2 3.09e-05 T CGCTCTCT TTGAGTTATA chrX:20656363-20656483 73 3.09e-05 ACGCTCTCTT CGCTCTCT TTGTTTTCAT chrX:17561736-17561856 25 3.09e-05 CGCTCTTTTC CGCTCTCT CACACACTCT chr2L:12421901-12422021 46 3.09e-05 aCTAGCTGAC CGCTCTCT TGCTCTCCCT chrX:21067591-21067711 53 3.09e-05 GCGAACGCTC CGCTCTCT TCGGGATCTA chrX:7285488-7285608 71 3.09e-05 TCTATTCTGG CGCTCTCT TTCCCTCTca chr3R:14730836-14730956 53 3.09e-05 CAGCGAGCTT CGCTCTCT GCGTAGCCTC chr2L:18444758-18444878 80 4.58e-05 ACGATCTGAT CTCTCTCC ACGGTCTGAT chr3R:24767723-24767843 52 4.58e-05 GCAGCTTCTA CTCTCTCC TGCACTCTCT chr2R:5893664-5893784 69 4.58e-05 TCTTTTGGGG CTCTCTCC GCTCTGCCTT chr2R:11493993-11494113 89 4.58e-05 caggagagGA CTCTCTCC CTTTTGCTCC chr3L:4167488-4167608 57 4.58e-05 GAGGCCGAGC CTCTCTCC CGAGAAGAGC chrX:10324470-10324590 59 6.13e-05 ctccgcttct cactctct tctctctATG chrX:1619207-1619327 35 6.13e-05 CCCACTCTCC CACTCTCT CGCGATTTCG chr3R:15901371-15901491 59 6.13e-05 ACCAGATTCG CACTCTCT GCCGGCAAAG chr3R:18447534-18447654 86 6.13e-05 GATTTTTTTA CACTCTCT TATGAGAGCG chrX:13625515-13625635 85 6.13e-05 GTTTGTACCC CACTCTCT ATCGCCCCTT chr3R:30571006-30571126 38 7.63e-05 TGTTGCACGA CTCTCGCT TGGCTTTCGA chr3L:21887006-21887126 48 7.63e-05 CTATTTGTTG CTCTCGCT TCGTGTGGAA chr2R:13992444-13992564 7 7.63e-05 ACACAC CTCTCGCT CTACCCTTGC chr3R:8090474-8090594 36 7.63e-05 AATCACTCCA CTCTCGCT GCGAAATTGT chr3L:881022-881142 59 7.63e-05 TATCTCTTCA CTCTCGCT CTTTGCAAGC chrX:15501561-15501681 95 7.63e-05 GGTGGGTTCG CTCTCGCT TTTTATGGCT chr3L:15304192-15304312 6 9.03e-05 CGTAG CGCTCTCC ATATATAGGG chrX:15501963-15502083 24 9.03e-05 ctcgattctc cgctctcc attctccatt chrX:1578624-1578744 23 9.03e-05 CGCTGttctg cgctctcc gttctgcaca chrX:1562515-1562635 14 9.03e-05 GCGGCCCATT CGCTCTCC TTGATTTGGC chr3L:15305321-15305441 1 9.03e-05 . CGCTCTCC TCGTCCATGG chr2R:6169055-6169175 67 1.38e-04 GACGCTTTGG CTCGCTCT CAACGCAGTT chr3R:4738990-4739110 113 1.38e-04 TTTTAATTGC CTGTCTCT chr2R:8735699-8735819 36 1.38e-04 CCGATTTAAG CTCGCTCT TTTCCTCGTT chrX:18276865-18276985 69 1.38e-04 GAGCCTCTCC CTGTCTCT CTTCCGCTTC chr3R:11458170-11458290 54 1.38e-04 GCTCTCGCCG CTCGCTCT TTGATTTCGA chrX:655660-655780 62 1.38e-04 GAATGTATCC CTCGCTCT TTCACGCCTA chrX:11685739-11685859 66 1.38e-04 tctggtctgt ctgtctct cggtcggcat chrX:2334175-2334295 36 1.38e-04 gtctcagtct ctgtctct ttctcgctca chr2R:15482806-15482926 112 1.38e-04 CCCAGATTTA CTCTCTTT G chrX:7068321-7068441 71 1.38e-04 AGCTTCTGGT CTCTcttt tgctttttgg chr3L:15510905-15511025 80 1.53e-04 GATAGCGCGG CACTCTCC ACATTCGCGT chr3L:22851310-22851430 30 1.53e-04 CCCAAGCCCA CACTCTCC TGCTCTCACC chr3R:11200149-11200269 72 1.81e-04 GAGAGGGGTC CTCTCGCC GGTCGATGGT chrX:7697510-7697630 25 2.86e-04 CTTCAATTGG CTCTCTTC CAAACTTCTC chr3R:16128607-16128727 36 2.86e-04 CTGTCTTCGG CTCTCTTC TTTCCATCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18849362-18849482 1.6e-05 57_[+1]_55 chr3L:7847796-7847916 1.6e-05 73_[+1]_39 chr2R:14965527-14965647 1.6e-05 59_[+1]_53 chr3L:12804469-12804589 1.6e-05 33_[+1]_79 chrX:1610159-1610279 1.6e-05 11_[+1]_101 chr3L:20443036-20443156 1.6e-05 52_[+1]_60 chrX:15163036-15163156 1.6e-05 67_[+1]_45 chrX:12007703-12007823 1.6e-05 59_[+1]_53 chr3L:13904492-13904612 1.6e-05 92_[+1]_20 chrX:9118753-9118873 1.6e-05 35_[+1]_77 chr3R:17681668-17681788 1.6e-05 72_[+1]_40 chrX:12471552-12471672 1.6e-05 4_[+1]_108 chr3R:21460045-21460165 1.6e-05 54_[+1]_58 chr3L:392926-393046 1.6e-05 66_[+1]_46 chrX:395910-396030 1.6e-05 51_[+1]_61 chr3R:9512332-9512452 1.6e-05 64_[+1]_48 chr3R:13258816-13258936 1.6e-05 107_[+1]_5 chr3L:18186939-18187059 1.6e-05 73_[+1]_39 chr3L:8056433-8056553 1.6e-05 36_[+1]_76 chr2R:5773140-5773260 1.6e-05 53_[+1]_59 chr2L:12288630-12288750 1.6e-05 60_[+1]_52 chrX:10930697-10930817 1.6e-05 75_[+1]_37 chr2R:12054859-12054979 1.6e-05 35_[+1]_77 chr2R:18229816-18229936 1.6e-05 59_[+1]_53 chr2R:14139928-14140048 1.6e-05 73_[+1]_39 chr2L:16689810-16689930 1.6e-05 89_[+1]_23 chr2R:18231220-18231340 1.6e-05 56_[+1]_56 chr3L:18066489-18066609 1.6e-05 61_[+1]_51 chr2R:18514893-18515013 1.6e-05 65_[+1]_47 chr3R:6157249-6157369 1.6e-05 52_[+1]_60 chr2R:21701304-21701424 3.1e-05 74_[+1]_38 chrX:1619772-1619892 3.1e-05 57_[+1]_55 chr3R:15476463-15476583 3.1e-05 91_[+1]_21 chr2R:13991820-13991940 3.1e-05 1_[+1]_111 chrX:20656363-20656483 3.1e-05 72_[+1]_40 chrX:17561736-17561856 3.1e-05 24_[+1]_88 chr2L:12421901-12422021 3.1e-05 45_[+1]_67 chrX:21067591-21067711 3.1e-05 52_[+1]_60 chrX:7285488-7285608 3.1e-05 70_[+1]_42 chr3R:14730836-14730956 3.1e-05 52_[+1]_60 chr2L:18444758-18444878 4.6e-05 79_[+1]_33 chr3R:24767723-24767843 4.6e-05 51_[+1]_61 chr2R:5893664-5893784 4.6e-05 68_[+1]_44 chr2R:11493993-11494113 4.6e-05 88_[+1]_24 chr3L:4167488-4167608 4.6e-05 56_[+1]_56 chrX:10324470-10324590 6.1e-05 58_[+1]_54 chrX:1619207-1619327 6.1e-05 34_[+1]_78 chr3R:15901371-15901491 6.1e-05 58_[+1]_54 chr3R:18447534-18447654 6.1e-05 85_[+1]_27 chrX:13625515-13625635 6.1e-05 84_[+1]_28 chr3R:30571006-30571126 7.6e-05 37_[+1]_75 chr3L:21887006-21887126 7.6e-05 47_[+1]_65 chr2R:13992444-13992564 7.6e-05 6_[+1]_106 chr3R:8090474-8090594 7.6e-05 35_[+1]_77 chr3L:881022-881142 7.6e-05 58_[+1]_54 chrX:15501561-15501681 7.6e-05 94_[+1]_18 chr3L:15304192-15304312 9e-05 5_[+1]_107 chrX:15501963-15502083 9e-05 23_[+1]_89 chrX:1578624-1578744 9e-05 22_[+1]_90 chrX:1562515-1562635 9e-05 13_[+1]_99 chr3L:15305321-15305441 9e-05 [+1]_112 chr2R:6169055-6169175 0.00014 66_[+1]_46 chr3R:4738990-4739110 0.00014 112_[+1] chr2R:8735699-8735819 0.00014 35_[+1]_77 chrX:18276865-18276985 0.00014 68_[+1]_44 chr3R:11458170-11458290 0.00014 53_[+1]_59 chrX:655660-655780 0.00014 61_[+1]_51 chrX:11685739-11685859 0.00014 65_[+1]_47 chrX:2334175-2334295 0.00014 35_[+1]_77 chr2R:15482806-15482926 0.00014 111_[+1]_1 chrX:7068321-7068441 0.00014 70_[+1]_42 chr3L:15510905-15511025 0.00015 79_[+1]_33 chr3L:22851310-22851430 0.00015 29_[+1]_83 chr3R:11200149-11200269 0.00018 71_[+1]_41 chrX:7697510-7697630 0.00029 24_[+1]_88 chr3R:16128607-16128727 0.00029 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=76 chr3R:18849362-18849482 ( 58) CTCTCTCT 1 chr3L:7847796-7847916 ( 74) CTCTCTCT 1 chr2R:14965527-14965647 ( 60) CTCTCTCT 1 chr3L:12804469-12804589 ( 34) CTCTCTCT 1 chrX:1610159-1610279 ( 12) CTCTCTCT 1 chr3L:20443036-20443156 ( 53) CTCTCTCT 1 chrX:15163036-15163156 ( 68) CTCTCTCT 1 chrX:12007703-12007823 ( 60) CTCTCTCT 1 chr3L:13904492-13904612 ( 93) CTCTCTCT 1 chrX:9118753-9118873 ( 36) CTCTCTCT 1 chr3R:17681668-17681788 ( 73) CTCTCTCT 1 chrX:12471552-12471672 ( 5) CTCTCTCT 1 chr3R:21460045-21460165 ( 55) CTCTCTCT 1 chr3L:392926-393046 ( 67) CTCTCTCT 1 chrX:395910-396030 ( 52) CTCTCTCT 1 chr3R:9512332-9512452 ( 65) CTCTCTCT 1 chr3R:13258816-13258936 ( 108) CTCTCTCT 1 chr3L:18186939-18187059 ( 74) CTCTCTCT 1 chr3L:8056433-8056553 ( 37) CTCTCTCT 1 chr2R:5773140-5773260 ( 54) CTCTCTCT 1 chr2L:12288630-12288750 ( 61) CTCTCTCT 1 chrX:10930697-10930817 ( 76) CTCTCTCT 1 chr2R:12054859-12054979 ( 36) CTCTCTCT 1 chr2R:18229816-18229936 ( 60) CTCTCTCT 1 chr2R:14139928-14140048 ( 74) CTCTCTCT 1 chr2L:16689810-16689930 ( 90) CTCTCTCT 1 chr2R:18231220-18231340 ( 57) CTCTCTCT 1 chr3L:18066489-18066609 ( 62) CTCTCTCT 1 chr2R:18514893-18515013 ( 66) CTCTCTCT 1 chr3R:6157249-6157369 ( 53) CTCTCTCT 1 chr2R:21701304-21701424 ( 75) CGCTCTCT 1 chrX:1619772-1619892 ( 58) CGCTCTCT 1 chr3R:15476463-15476583 ( 92) CGCTCTCT 1 chr2R:13991820-13991940 ( 2) CGCTCTCT 1 chrX:20656363-20656483 ( 73) CGCTCTCT 1 chrX:17561736-17561856 ( 25) CGCTCTCT 1 chr2L:12421901-12422021 ( 46) CGCTCTCT 1 chrX:21067591-21067711 ( 53) CGCTCTCT 1 chrX:7285488-7285608 ( 71) CGCTCTCT 1 chr3R:14730836-14730956 ( 53) CGCTCTCT 1 chr2L:18444758-18444878 ( 80) CTCTCTCC 1 chr3R:24767723-24767843 ( 52) CTCTCTCC 1 chr2R:5893664-5893784 ( 69) CTCTCTCC 1 chr2R:11493993-11494113 ( 89) CTCTCTCC 1 chr3L:4167488-4167608 ( 57) CTCTCTCC 1 chrX:10324470-10324590 ( 59) CACTCTCT 1 chrX:1619207-1619327 ( 35) CACTCTCT 1 chr3R:15901371-15901491 ( 59) CACTCTCT 1 chr3R:18447534-18447654 ( 86) CACTCTCT 1 chrX:13625515-13625635 ( 85) CACTCTCT 1 chr3R:30571006-30571126 ( 38) CTCTCGCT 1 chr3L:21887006-21887126 ( 48) CTCTCGCT 1 chr2R:13992444-13992564 ( 7) CTCTCGCT 1 chr3R:8090474-8090594 ( 36) CTCTCGCT 1 chr3L:881022-881142 ( 59) CTCTCGCT 1 chrX:15501561-15501681 ( 95) CTCTCGCT 1 chr3L:15304192-15304312 ( 6) CGCTCTCC 1 chrX:15501963-15502083 ( 24) CGCTCTCC 1 chrX:1578624-1578744 ( 23) CGCTCTCC 1 chrX:1562515-1562635 ( 14) CGCTCTCC 1 chr3L:15305321-15305441 ( 1) CGCTCTCC 1 chr2R:6169055-6169175 ( 67) CTCGCTCT 1 chr3R:4738990-4739110 ( 113) CTGTCTCT 1 chr2R:8735699-8735819 ( 36) CTCGCTCT 1 chrX:18276865-18276985 ( 69) CTGTCTCT 1 chr3R:11458170-11458290 ( 54) CTCGCTCT 1 chrX:655660-655780 ( 62) CTCGCTCT 1 chrX:11685739-11685859 ( 66) CTGTCTCT 1 chrX:2334175-2334295 ( 36) CTGTCTCT 1 chr2R:15482806-15482926 ( 112) CTCTCTTT 1 chrX:7068321-7068441 ( 71) CTCTCTTT 1 chr3L:15510905-15511025 ( 80) CACTCTCC 1 chr3L:22851310-22851430 ( 30) CACTCTCC 1 chr3R:11200149-11200269 ( 72) CTCTCGCC 1 chrX:7697510-7697630 ( 25) CTCTCTTC 1 chr3R:16128607-16128727 ( 36) CTCTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 2.4e-052 -1289 204 -1289 -1289 -145 -1289 -31 145 -1289 196 -222 -1289 -1289 -1289 -222 186 -1289 204 -1289 -1289 -1289 -1289 -141 180 -1289 196 -1289 -231 -1289 -30 -1289 162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 2.4e-052 0.000000 1.000000 0.000000 0.000000 0.092105 0.000000 0.197368 0.710526 0.000000 0.947368 0.052632 0.000000 0.000000 0.000000 0.052632 0.947368 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.092105 0.907895 0.000000 0.947368 0.000000 0.052632 0.000000 0.197368 0.000000 0.802632 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 regular expression -------------------------------------------------------------------------------- CTCTCTCT -------------------------------------------------------------------------------- Time 8.61 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGAGAGM MEME-2 width = 8 sites = 90 llr = 730 E-value = 1.3e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3a2a:8:5 pos.-specific C 2::::2:5 probability G 5:8:a:a: matrix T :::::::: bits 2.0 * * * 1.8 * ** * 1.6 * ** * 1.4 * **** Relative 1.2 ****** Entropy 1.0 ****** (11.7 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A A C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7306826-7306946 76 2.85e-05 AAGAGAGAAA GAGAGAGC TCTTTCACTG chr3L:9695439-9695559 76 2.85e-05 CATATTTTAC GAGAGAGC GCAAGAGAGC chr2L:3896150-3896270 17 2.85e-05 CTGTCTCACC GAGAGAGA AAACTCGGAG chr2R:10807399-10807519 46 2.85e-05 GTAATTGCAA GAGAGAGC AAGAGGCCAA chr2L:12545780-12545900 87 2.85e-05 aaatgagtga gagagaga tggagagaga chr2R:7170958-7171078 49 2.85e-05 GCgagagagc gagagagc gagagacaga chrX:18865025-18865145 97 2.85e-05 gagtaacagt gagagaga cggaggaaga chr3L:15304192-15304312 102 2.85e-05 CAGTGCGAAT GAGAGAGC GATACGGTGC chr3R:4807767-4807887 73 2.85e-05 TAGAGCCTCT GAGAGAGA ACGCGAAATG chr3L:4692671-4692791 16 2.85e-05 Tagagagaga gagagaga gCGCGCGCGA chrX:19127439-19127559 43 2.85e-05 gagagagaga gagagaga gggagggaga chr2L:15109263-15109383 44 2.85e-05 GTCTATGAGA GAGAGAGA TACGGAGCGA chr3R:15901371-15901491 85 2.85e-05 AGATTCGCTA GAGAGAGC CCGCCAAAAC chr2R:7146975-7147095 51 2.85e-05 TAGAATAGAG GAGAGAGA GCGCACTGGA chr3L:21060296-21060416 64 2.85e-05 cggagagact gagagagc gagacagaga chr3L:881022-881142 34 2.85e-05 AAATGCGAAG GAGAGAGC CCAAGTTTAT chrX:1623313-1623433 26 2.85e-05 ACGGAAACAG gagagaga cagagagaga chrX:18276865-18276985 55 2.85e-05 CATGACAGCC GAGAGAGC CTCTCCCTGT chr2R:8650083-8650203 57 2.85e-05 gtgagtgagc gagagagc gcgggagaga chrX:1562515-1562635 113 2.85e-05 gcgagtaaga gagagaga chr3R:7122260-7122380 106 2.85e-05 AAGCGAGAGC GAGAGAGA TGGCACA chr2L:5107787-5107907 76 2.85e-05 TAAAGGTAAC GAGAGAGC GAGCGGGGAG chrX:17651327-17651447 42 2.85e-05 ACTCTCTAAA GAGAGAGA ATCAGAGTCA chr2L:501784-501904 66 2.85e-05 gagagagagc gagagaga gagagCTGGC chrX:7068321-7068441 21 2.85e-05 AAGGTGGCTA GAGAGAGA CAGGCGGACA chrX:1579063-1579183 75 2.85e-05 CAACgaggga gagagaga tagataggta chr3L:22851310-22851430 76 2.85e-05 ATACCTGCAG GAGAGAGC TCCCCAAATT chr2L:16520615-16520735 46 5.79e-05 TGACACGCGA AAGAGAGC GCACGAAGAA chr2R:6168348-6168468 87 5.79e-05 accacaaaga aagagagC CGCAAGCACA chr3R:15094984-15095104 86 5.79e-05 gagagagtga aagagagc ggcgagaTTC chrX:1610159-1610279 99 5.79e-05 TATGCAGGCG AAGAGAGA TCGACGTCGG chr3R:4738990-4739110 70 5.79e-05 cgaaagagcg aagagaga aagagCGGTT chr3L:9053590-9053710 44 5.79e-05 GAGCTAGAGC AAGAGAGC TGGTGAGAGC chr3R:15476463-15476583 57 5.79e-05 CTGTGGCGAA AAGAGAGC CGAGCGCGGC chr3R:11200149-11200269 54 5.79e-05 GCAAGAATCC AAGAGAGC GAGAGGGGTC chr3L:13474890-13475010 82 5.79e-05 GAGAAAGAGG AAGAGAGA GTAAGTGAAG chrX:9284013-9284133 64 5.79e-05 CAGCTGATTA AAGAGAGC GCGCTTAAAT chr3R:18912927-18913047 5 5.79e-05 GCTC AAGAGAGC CGCATACTTT chr2R:7158270-7158390 28 5.79e-05 CGGCGATTGG AAGAGAGA ACCGGTCCAC chr3R:4394302-4394422 40 5.79e-05 AATGAAGTCG AAGAGAGC AGTCACCAGA chr3L:445908-446028 11 5.79e-05 GCCCTGAGAA AAGAGAGC GAGAGGAAAG chr2R:11493993-11494113 56 5.79e-05 Ggagaggaga aagagaga tgcagagagt chr2R:14361817-14361937 52 5.79e-05 CTTACGGAGA AAGAGAGA GGGAGGAGAG chr2L:9238137-9238257 82 5.79e-05 AAACTGTTTC AAGAGAGC CAGTGAGAGA chr3R:4174513-4174633 48 8.62e-05 TGAGTGAGCG CAGAGAGC GTCTTTCGAC chr3L:4148575-4148695 34 8.62e-05 GAGAGTTGCC CAGAGAGA TCGATTGATT chrX:5965702-5965822 37 8.62e-05 ACTCTTCTGC CAGAGAGA GGACGAGAGT chr3R:17377696-17377816 50 8.62e-05 ATGAGAGGTG CAGAGAGC CGCTGTGGGA chr2L:8012630-8012750 54 8.62e-05 CACGAGAACT CAGAGAGC CAGAGATACA chrX:17710890-17711010 67 8.62e-05 GAGCGCTCGA CAGAGAGC GCGCGAGAGA chr2R:15482806-15482926 80 8.62e-05 CCGCCAGTCT CAGAGAGA CCCAAGCGCG chrX:1385997-1386117 32 8.62e-05 AAGTCTTCGC CAGAGAGC GCTGAGTGGG chr3R:28324963-28325083 38 8.62e-05 ATCGGGTCAA CAGAGAGA GTCGGAGTGC chr3R:29064244-29064364 43 1.16e-04 gtgagaaaaa gaaagagc gcgttagagt chrX:12895461-12895581 43 1.16e-04 GAGAGGCGAC GAAAGAGA CGCTGATGAA chr2L:11069313-11069433 66 1.16e-04 AGGAAGGTGG GAAAGAGA AGGCTGGCCG chr3L:15510905-15511025 18 1.16e-04 GGGAGAGGGA GAAAGAGA CGGGGCCGGC chr3L:20733916-20734036 49 1.16e-04 TATGGCAACC GAAAGAGC CAAACTGCCG chrX:13272766-13272886 53 1.16e-04 GAATGACAGA GAAAGAGC GCAGAAGAGC chr3L:3257744-3257864 64 1.43e-04 CGCTCCGCAC GAGAGcga ttcaatccat chrX:8870150-8870270 76 1.43e-04 gatcgagagc gagagcga gagctcgaga chr3R:18447534-18447654 97 1.43e-04 ACTCTCTTAT GAGAGCGA ACAGCATAAA chrX:7285488-7285608 20 1.43e-04 AAGAGCGAGG GAGAGCGA GATTGTAAGC chr2R:21701304-21701424 10 1.73e-04 AGTGGCGCG AAAAGAGC TTCGTAACTG chr3L:9380464-9380584 108 1.73e-04 CTGCAGTCGG AAAAGAGC AAAAA chr3R:15131035-15131155 98 1.73e-04 AAAAGTGCGG AAAAGAGA GGCAGACACA chr2L:10757149-10757269 70 1.73e-04 AAAAAGCGCC AAAAGAGC GGATGCACAA chr3R:29876363-29876483 76 1.73e-04 AGAATCGGCC AAAAGAGA GGAGCAGCGG chr2L:7796001-7796121 96 2.02e-04 GCTGGGCAAA AAGAGCGA GCTGCTGGTG chr2R:15600414-15600534 37 2.31e-04 TGTGGCACTC CAAAGAGC ACAGCAAAGA chr2R:23722596-23722716 87 2.31e-04 GCTCCATAAA CAAAGAGC CGGGCGAAAA chr2R:18344999-18345119 6 2.31e-04 TGAGC CAAAGAGC AACGACGCAT chr3R:7969021-7969141 42 2.31e-04 AATCAATTAG CAAAGAGC GGCGCGGGAA chr2L:4370636-4370756 45 2.58e-04 TGGCCATTAT CAGAGCGA AGAGAGTGCC chr3L:4692247-4692367 6 2.58e-04 GTAAA CAGAGCGA ATTCAGAGCT chr3L:15684249-15684369 100 2.58e-04 CAAGAGCTTG CAGAGCGA AAATCGGTAG chr2R:12054859-12054979 17 2.58e-04 GGAGCCTTAA CAGAGCGc tcgctctctc chrX:18489693-18489813 52 2.58e-04 GGTGCGCTCG CAGAGCGC GAGAAATGAA chr2R:13219276-13219396 90 2.73e-04 AATCGATATC GAGAGAGT TTGGGAGAGC chr3R:9501920-9502040 51 3.17e-04 aaGCGAGAGC AAGAGAGT TGGGATCGTA chr3L:760586-760706 76 3.75e-04 CGTGCAGGCC AAAAGCGA ACCTTCTTCG chr3L:13904492-13904612 1 3.75e-04 . AAAAGCGA ACTGAGGCCC chr2L:12421901-12422021 15 3.75e-04 gtgagtgagc gagtgaga aaccgagtga chr3R:11458170-11458290 81 3.75e-04 ATTTCGCTCG GAGTGAGC TTTTGgccgc chr3R:7966586-7966706 110 3.75e-04 CGTGGACCGA GAGTGAGA GTG chrX:497540-497660 101 3.75e-04 TTGCTGTTGC AAAAGCGA GCTTACAATA chrX:15501561-15501681 12 3.75e-04 AGAAACCCCG AAAAGCGA CGACAACCTG chr3L:18066489-18066609 87 3.75e-04 GCGGATGTGC AAAAGCGC ATGTTTGCGA chrX:395910-396030 107 3.90e-04 GAGTGTTGTG CAGAGAGT TGCATA chr2R:13991820-13991940 70 4.63e-04 CGAAGACATC GAGAGAGG AGAGCGGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7306826-7306946 2.9e-05 75_[+2]_37 chr3L:9695439-9695559 2.9e-05 75_[+2]_37 chr2L:3896150-3896270 2.9e-05 16_[+2]_96 chr2R:10807399-10807519 2.9e-05 45_[+2]_67 chr2L:12545780-12545900 2.9e-05 86_[+2]_26 chr2R:7170958-7171078 2.9e-05 48_[+2]_64 chrX:18865025-18865145 2.9e-05 96_[+2]_16 chr3L:15304192-15304312 2.9e-05 101_[+2]_11 chr3R:4807767-4807887 2.9e-05 72_[+2]_40 chr3L:4692671-4692791 2.9e-05 15_[+2]_97 chrX:19127439-19127559 2.9e-05 42_[+2]_70 chr2L:15109263-15109383 2.9e-05 43_[+2]_69 chr3R:15901371-15901491 2.9e-05 84_[+2]_28 chr2R:7146975-7147095 2.9e-05 50_[+2]_62 chr3L:21060296-21060416 2.9e-05 63_[+2]_49 chr3L:881022-881142 2.9e-05 33_[+2]_79 chrX:1623313-1623433 2.9e-05 25_[+2]_87 chrX:18276865-18276985 2.9e-05 54_[+2]_58 chr2R:8650083-8650203 2.9e-05 56_[+2]_56 chrX:1562515-1562635 2.9e-05 112_[+2] chr3R:7122260-7122380 2.9e-05 105_[+2]_7 chr2L:5107787-5107907 2.9e-05 75_[+2]_37 chrX:17651327-17651447 2.9e-05 41_[+2]_71 chr2L:501784-501904 2.9e-05 65_[+2]_47 chrX:7068321-7068441 2.9e-05 20_[+2]_92 chrX:1579063-1579183 2.9e-05 74_[+2]_38 chr3L:22851310-22851430 2.9e-05 75_[+2]_37 chr2L:16520615-16520735 5.8e-05 45_[+2]_67 chr2R:6168348-6168468 5.8e-05 86_[+2]_26 chr3R:15094984-15095104 5.8e-05 85_[+2]_27 chrX:1610159-1610279 5.8e-05 98_[+2]_14 chr3R:4738990-4739110 5.8e-05 69_[+2]_43 chr3L:9053590-9053710 5.8e-05 43_[+2]_69 chr3R:15476463-15476583 5.8e-05 56_[+2]_56 chr3R:11200149-11200269 5.8e-05 53_[+2]_59 chr3L:13474890-13475010 5.8e-05 81_[+2]_31 chrX:9284013-9284133 5.8e-05 63_[+2]_49 chr3R:18912927-18913047 5.8e-05 4_[+2]_108 chr2R:7158270-7158390 5.8e-05 27_[+2]_85 chr3R:4394302-4394422 5.8e-05 39_[+2]_73 chr3L:445908-446028 5.8e-05 10_[+2]_102 chr2R:11493993-11494113 5.8e-05 55_[+2]_57 chr2R:14361817-14361937 5.8e-05 51_[+2]_61 chr2L:9238137-9238257 5.8e-05 81_[+2]_31 chr3R:4174513-4174633 8.6e-05 47_[+2]_65 chr3L:4148575-4148695 8.6e-05 33_[+2]_79 chrX:5965702-5965822 8.6e-05 36_[+2]_76 chr3R:17377696-17377816 8.6e-05 49_[+2]_63 chr2L:8012630-8012750 8.6e-05 53_[+2]_59 chrX:17710890-17711010 8.6e-05 66_[+2]_46 chr2R:15482806-15482926 8.6e-05 79_[+2]_33 chrX:1385997-1386117 8.6e-05 31_[+2]_81 chr3R:28324963-28325083 8.6e-05 37_[+2]_75 chr3R:29064244-29064364 0.00012 42_[+2]_70 chrX:12895461-12895581 0.00012 42_[+2]_70 chr2L:11069313-11069433 0.00012 65_[+2]_47 chr3L:15510905-15511025 0.00012 17_[+2]_95 chr3L:20733916-20734036 0.00012 48_[+2]_64 chrX:13272766-13272886 0.00012 52_[+2]_60 chr3L:3257744-3257864 0.00014 63_[+2]_49 chrX:8870150-8870270 0.00014 75_[+2]_37 chr3R:18447534-18447654 0.00014 96_[+2]_16 chrX:7285488-7285608 0.00014 19_[+2]_93 chr2R:21701304-21701424 0.00017 9_[+2]_103 chr3L:9380464-9380584 0.00017 107_[+2]_5 chr3R:15131035-15131155 0.00017 97_[+2]_15 chr2L:10757149-10757269 0.00017 69_[+2]_43 chr3R:29876363-29876483 0.00017 75_[+2]_37 chr2L:7796001-7796121 0.0002 95_[+2]_17 chr2R:15600414-15600534 0.00023 36_[+2]_76 chr2R:23722596-23722716 0.00023 86_[+2]_26 chr2R:18344999-18345119 0.00023 5_[+2]_107 chr3R:7969021-7969141 0.00023 41_[+2]_71 chr2L:4370636-4370756 0.00026 44_[+2]_68 chr3L:4692247-4692367 0.00026 5_[+2]_107 chr3L:15684249-15684369 0.00026 99_[+2]_13 chr2R:12054859-12054979 0.00026 16_[+2]_96 chrX:18489693-18489813 0.00026 51_[+2]_61 chr2R:13219276-13219396 0.00027 89_[+2]_23 chr3R:9501920-9502040 0.00032 50_[+2]_62 chr3L:760586-760706 0.00038 75_[+2]_37 chr3L:13904492-13904612 0.00038 [+2]_112 chr2L:12421901-12422021 0.00038 14_[+2]_98 chr3R:11458170-11458290 0.00038 80_[+2]_32 chr3R:7966586-7966706 0.00038 109_[+2]_3 chrX:497540-497660 0.00038 100_[+2]_12 chrX:15501561-15501681 0.00038 11_[+2]_101 chr3L:18066489-18066609 0.00038 86_[+2]_26 chrX:395910-396030 0.00039 106_[+2]_6 chr2R:13991820-13991940 0.00046 69_[+2]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGAGAGM width=8 seqs=90 chr3R:7306826-7306946 ( 76) GAGAGAGC 1 chr3L:9695439-9695559 ( 76) GAGAGAGC 1 chr2L:3896150-3896270 ( 17) GAGAGAGA 1 chr2R:10807399-10807519 ( 46) GAGAGAGC 1 chr2L:12545780-12545900 ( 87) GAGAGAGA 1 chr2R:7170958-7171078 ( 49) GAGAGAGC 1 chrX:18865025-18865145 ( 97) GAGAGAGA 1 chr3L:15304192-15304312 ( 102) GAGAGAGC 1 chr3R:4807767-4807887 ( 73) GAGAGAGA 1 chr3L:4692671-4692791 ( 16) GAGAGAGA 1 chrX:19127439-19127559 ( 43) GAGAGAGA 1 chr2L:15109263-15109383 ( 44) GAGAGAGA 1 chr3R:15901371-15901491 ( 85) GAGAGAGC 1 chr2R:7146975-7147095 ( 51) GAGAGAGA 1 chr3L:21060296-21060416 ( 64) GAGAGAGC 1 chr3L:881022-881142 ( 34) GAGAGAGC 1 chrX:1623313-1623433 ( 26) GAGAGAGA 1 chrX:18276865-18276985 ( 55) GAGAGAGC 1 chr2R:8650083-8650203 ( 57) GAGAGAGC 1 chrX:1562515-1562635 ( 113) GAGAGAGA 1 chr3R:7122260-7122380 ( 106) GAGAGAGA 1 chr2L:5107787-5107907 ( 76) GAGAGAGC 1 chrX:17651327-17651447 ( 42) GAGAGAGA 1 chr2L:501784-501904 ( 66) GAGAGAGA 1 chrX:7068321-7068441 ( 21) GAGAGAGA 1 chrX:1579063-1579183 ( 75) GAGAGAGA 1 chr3L:22851310-22851430 ( 76) GAGAGAGC 1 chr2L:16520615-16520735 ( 46) AAGAGAGC 1 chr2R:6168348-6168468 ( 87) AAGAGAGC 1 chr3R:15094984-15095104 ( 86) AAGAGAGC 1 chrX:1610159-1610279 ( 99) AAGAGAGA 1 chr3R:4738990-4739110 ( 70) AAGAGAGA 1 chr3L:9053590-9053710 ( 44) AAGAGAGC 1 chr3R:15476463-15476583 ( 57) AAGAGAGC 1 chr3R:11200149-11200269 ( 54) AAGAGAGC 1 chr3L:13474890-13475010 ( 82) AAGAGAGA 1 chrX:9284013-9284133 ( 64) AAGAGAGC 1 chr3R:18912927-18913047 ( 5) AAGAGAGC 1 chr2R:7158270-7158390 ( 28) AAGAGAGA 1 chr3R:4394302-4394422 ( 40) AAGAGAGC 1 chr3L:445908-446028 ( 11) AAGAGAGC 1 chr2R:11493993-11494113 ( 56) AAGAGAGA 1 chr2R:14361817-14361937 ( 52) AAGAGAGA 1 chr2L:9238137-9238257 ( 82) AAGAGAGC 1 chr3R:4174513-4174633 ( 48) CAGAGAGC 1 chr3L:4148575-4148695 ( 34) CAGAGAGA 1 chrX:5965702-5965822 ( 37) CAGAGAGA 1 chr3R:17377696-17377816 ( 50) CAGAGAGC 1 chr2L:8012630-8012750 ( 54) CAGAGAGC 1 chrX:17710890-17711010 ( 67) CAGAGAGC 1 chr2R:15482806-15482926 ( 80) CAGAGAGA 1 chrX:1385997-1386117 ( 32) CAGAGAGC 1 chr3R:28324963-28325083 ( 38) CAGAGAGA 1 chr3R:29064244-29064364 ( 43) GAAAGAGC 1 chrX:12895461-12895581 ( 43) GAAAGAGA 1 chr2L:11069313-11069433 ( 66) GAAAGAGA 1 chr3L:15510905-15511025 ( 18) GAAAGAGA 1 chr3L:20733916-20734036 ( 49) GAAAGAGC 1 chrX:13272766-13272886 ( 53) GAAAGAGC 1 chr3L:3257744-3257864 ( 64) GAGAGCGA 1 chrX:8870150-8870270 ( 76) GAGAGCGA 1 chr3R:18447534-18447654 ( 97) GAGAGCGA 1 chrX:7285488-7285608 ( 20) GAGAGCGA 1 chr2R:21701304-21701424 ( 10) AAAAGAGC 1 chr3L:9380464-9380584 ( 108) AAAAGAGC 1 chr3R:15131035-15131155 ( 98) AAAAGAGA 1 chr2L:10757149-10757269 ( 70) AAAAGAGC 1 chr3R:29876363-29876483 ( 76) AAAAGAGA 1 chr2L:7796001-7796121 ( 96) AAGAGCGA 1 chr2R:15600414-15600534 ( 37) CAAAGAGC 1 chr2R:23722596-23722716 ( 87) CAAAGAGC 1 chr2R:18344999-18345119 ( 6) CAAAGAGC 1 chr3R:7969021-7969141 ( 42) CAAAGAGC 1 chr2L:4370636-4370756 ( 45) CAGAGCGA 1 chr3L:4692247-4692367 ( 6) CAGAGCGA 1 chr3L:15684249-15684369 ( 100) CAGAGCGA 1 chr2R:12054859-12054979 ( 17) CAGAGCGC 1 chrX:18489693-18489813 ( 52) CAGAGCGC 1 chr2R:13219276-13219396 ( 90) GAGAGAGT 1 chr3R:9501920-9502040 ( 51) AAGAGAGT 1 chr3L:760586-760706 ( 76) AAAAGCGA 1 chr3L:13904492-13904612 ( 1) AAAAGCGA 1 chr2L:12421901-12422021 ( 15) GAGTGAGA 1 chr3R:11458170-11458290 ( 81) GAGTGAGC 1 chr3R:7966586-7966706 ( 110) GAGTGAGA 1 chrX:497540-497660 ( 101) AAAAGCGA 1 chrX:15501561-15501681 ( 12) AAAAGCGA 1 chr3L:18066489-18066609 ( 87) AAAAGCGC 1 chrX:395910-396030 ( 107) CAGAGAGT 1 chr2R:13991820-13991940 ( 70) GAGAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 1.3e-042 36 -20 93 -1314 199 -1314 -1314 -1314 -18 -1314 167 -1314 194 -1314 -1314 -296 -1314 -1314 203 -1314 173 -55 -1314 -1314 -1314 -1314 203 -1314 96 94 -446 -296 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.3e-042 0.322222 0.211111 0.466667 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.966667 0.000000 0.000000 0.033333 0.000000 0.000000 1.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.488889 0.466667 0.011111 0.033333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGM MEME-2 regular expression -------------------------------------------------------------------------------- [GAC]A[GA]AGAG[AC] -------------------------------------------------------------------------------- Time 14.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTYTCT MEME-3 width = 8 sites = 48 llr = 430 E-value = 3.6e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a:6:7: probability G :::::::3 matrix T :a:a4a37 bits 2.0 *** * 1.8 **** * 1.6 **** * 1.4 **** * Relative 1.2 **** ** Entropy 1.0 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus T TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18849362-18849482 50 1.59e-05 CGctctctct ctctctct ctctctcttt chr3L:20443036-20443156 65 1.59e-05 ctctctcgct ctctctct TTAGCTTCGT chrX:15163036-15163156 60 1.59e-05 cgctcgctgg ctctctct ctctctctct chrX:12007703-12007823 48 1.59e-05 ACTATCATTC ctctctct ccctctctct chr3L:13904492-13904612 107 1.59e-05 ctctgtctct ctctctct TTTGTT chr3R:21460045-21460165 63 1.59e-05 AActctctct ctctctct tgctggtatc chr3R:13258816-13258936 67 1.59e-05 ttttctctcc ctctctct cGACAGCTTT chr3L:18186939-18187059 64 1.59e-05 ctccttttct ctctctct ctctctctct chr2R:5773140-5773260 64 1.59e-05 ctctctctct ctctctct ctGCTGTTCG chr2R:12054859-12054979 28 1.59e-05 AGAGCGctcg ctctctct ctctctctct chr2R:18229816-18229936 34 1.59e-05 TTTActcact ctctctct ctccttctct chr2R:14139928-14140048 66 1.59e-05 ccttctcaca ctctctct ctctctcttc chr2R:18231220-18231340 74 1.59e-05 ttcgctctcc ctctctct GAATTCAAGC chr2R:18514893-18515013 56 1.59e-05 Ttctctctcg ctctctct atctctctct chr3R:6157249-6157369 45 1.59e-05 TCAGctctct ctctctct ctctctctct chrX:5965702-5965822 70 3.30e-05 CGAGAGAAAA CTCTTTCT CCAGTAGCCA chr2L:4370636-4370756 72 3.30e-05 CAACTCTTGG CTCTTTCT CTCGTCTTGG chrX:395910-396030 60 3.30e-05 ctctctctct ctctttct ctccgattct chr3R:9512332-9512452 13 3.30e-05 CAGTAACAGT CTCTTTCT CGCGATCGAT chr2R:8735699-8735819 54 3.30e-05 TTTCCTCGTT CTCTTTCT CTTTCCGAGC chr2L:12288630-12288750 77 3.30e-05 ctctctcttg ctctttct ctctgtctgt chr3L:18066489-18066609 54 3.30e-05 AAAAACGtct ctctttct ctctctctGC chr3L:7847796-7847916 62 4.80e-05 CAACCGATAG CTCTCTCG CCCGCTCTCT chr3R:4807767-4807887 1 4.80e-05 . CTCTCTCG GCCACACATG chrX:17561736-17561856 39 4.80e-05 CTCTCACACA CTCTCTCG TTTTCGGCAC chr3R:18447534-18447654 67 4.80e-05 AGCGCCATTT CTCTCTCG CGATTTTTTT chrX:10324470-10324590 31 6.50e-05 GCctctctca ctctcttt tttcctttct chr3L:12804469-12804589 75 6.50e-05 gcgctccaca ctctcttt cgctcGTGCA chr3R:24767723-24767843 64 6.50e-05 CTCTCCTGCA CTCTCTTT CGCTCTCGCT chr3L:8056433-8056553 25 6.50e-05 TCGCTCTCCG CTCTCTTT ATCGCTCTCT chr2R:5893664-5893784 56 6.50e-05 AGCTCGCGAT CTCTCTTT TGGGGCTCTC chr2L:16689810-16689930 82 6.50e-05 CGCTCTTGTt ctctcttt ctctctctct chr3R:14730836-14730956 68 6.50e-05 TCTGCGTAGC CTCTCTTT TCTCACTTGG chr3R:4174513-4174633 68 8.11e-05 CTTTCGACGA CTCTTTCG TCGCGAGCAA chrX:14951556-14951676 48 8.11e-05 TCCTTGAGAA CTCTTTCG CCACCCGTGC chr2R:16386885-16387005 23 8.11e-05 GCAACCCGTT CTCTTTCG TGCCTCTGAC chrX:655660-655780 7 8.11e-05 TGCTTT CTCTTTCG CTCGCGAGAC chrX:10930697-10930817 39 8.11e-05 TGCAGTTGCA CTCTTTCG CTTTCTCGTT chrX:2334175-2334295 105 8.11e-05 ttatctctat ctctttcG CCGGGAGA chr3L:20733916-20734036 112 8.11e-05 CCAAAAACCC CTCTTTCG G chr3R:20564106-20564226 26 9.94e-05 GTAGTCTTAT CTCTTTTT AGTTGCTCTT chrM:8146-8266 82 9.94e-05 ATAAATGATT CTCTTTTT AAAATTAATA chr3L:20827070-20827190 104 1.15e-04 TGGCAAATAT CTCTCTTG GACACGTTG chr2R:13992444-13992564 73 1.33e-04 TTATGGCCGT CTCTtttg tctctccatt chr2R:13991820-13991940 95 1.33e-04 AGAGTTTCTG CTCTTTTG ATTGTTGTTG chr3L:3257744-3257864 5 1.33e-04 CCAT CTCTTTTG GCCATTGCGA chr3R:11691079-11691199 91 1.50e-04 CGATTTTGAG TTCTCTCT AAGCTTTGGA chr2L:11842568-11842688 31 1.50e-04 TTTCCCCCAT TTCTCTCT GCCTTCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18849362-18849482 1.6e-05 49_[+3]_63 chr3L:20443036-20443156 1.6e-05 64_[+3]_48 chrX:15163036-15163156 1.6e-05 59_[+3]_53 chrX:12007703-12007823 1.6e-05 47_[+3]_65 chr3L:13904492-13904612 1.6e-05 106_[+3]_6 chr3R:21460045-21460165 1.6e-05 62_[+3]_50 chr3R:13258816-13258936 1.6e-05 66_[+3]_46 chr3L:18186939-18187059 1.6e-05 63_[+3]_49 chr2R:5773140-5773260 1.6e-05 63_[+3]_49 chr2R:12054859-12054979 1.6e-05 27_[+3]_85 chr2R:18229816-18229936 1.6e-05 33_[+3]_79 chr2R:14139928-14140048 1.6e-05 65_[+3]_47 chr2R:18231220-18231340 1.6e-05 73_[+3]_39 chr2R:18514893-18515013 1.6e-05 55_[+3]_57 chr3R:6157249-6157369 1.6e-05 44_[+3]_68 chrX:5965702-5965822 3.3e-05 69_[+3]_43 chr2L:4370636-4370756 3.3e-05 71_[+3]_41 chrX:395910-396030 3.3e-05 59_[+3]_53 chr3R:9512332-9512452 3.3e-05 12_[+3]_100 chr2R:8735699-8735819 3.3e-05 53_[+3]_59 chr2L:12288630-12288750 3.3e-05 76_[+3]_36 chr3L:18066489-18066609 3.3e-05 53_[+3]_59 chr3L:7847796-7847916 4.8e-05 61_[+3]_51 chr3R:4807767-4807887 4.8e-05 [+3]_112 chrX:17561736-17561856 4.8e-05 38_[+3]_74 chr3R:18447534-18447654 4.8e-05 66_[+3]_46 chrX:10324470-10324590 6.5e-05 30_[+3]_82 chr3L:12804469-12804589 6.5e-05 74_[+3]_38 chr3R:24767723-24767843 6.5e-05 63_[+3]_49 chr3L:8056433-8056553 6.5e-05 24_[+3]_88 chr2R:5893664-5893784 6.5e-05 55_[+3]_57 chr2L:16689810-16689930 6.5e-05 81_[+3]_31 chr3R:14730836-14730956 6.5e-05 67_[+3]_45 chr3R:4174513-4174633 8.1e-05 67_[+3]_45 chrX:14951556-14951676 8.1e-05 47_[+3]_65 chr2R:16386885-16387005 8.1e-05 22_[+3]_90 chrX:655660-655780 8.1e-05 6_[+3]_106 chrX:10930697-10930817 8.1e-05 38_[+3]_74 chrX:2334175-2334295 8.1e-05 104_[+3]_8 chr3L:20733916-20734036 8.1e-05 111_[+3]_1 chr3R:20564106-20564226 9.9e-05 25_[+3]_87 chrM:8146-8266 9.9e-05 81_[+3]_31 chr3L:20827070-20827190 0.00012 103_[+3]_9 chr2R:13992444-13992564 0.00013 72_[+3]_40 chr2R:13991820-13991940 0.00013 94_[+3]_18 chr3L:3257744-3257864 0.00013 4_[+3]_108 chr3R:11691079-11691199 0.00015 90_[+3]_22 chr2L:11842568-11842688 0.00015 30_[+3]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTYTCT width=8 seqs=48 chr3R:18849362-18849482 ( 50) CTCTCTCT 1 chr3L:20443036-20443156 ( 65) CTCTCTCT 1 chrX:15163036-15163156 ( 60) CTCTCTCT 1 chrX:12007703-12007823 ( 48) CTCTCTCT 1 chr3L:13904492-13904612 ( 107) CTCTCTCT 1 chr3R:21460045-21460165 ( 63) CTCTCTCT 1 chr3R:13258816-13258936 ( 67) CTCTCTCT 1 chr3L:18186939-18187059 ( 64) CTCTCTCT 1 chr2R:5773140-5773260 ( 64) CTCTCTCT 1 chr2R:12054859-12054979 ( 28) CTCTCTCT 1 chr2R:18229816-18229936 ( 34) CTCTCTCT 1 chr2R:14139928-14140048 ( 66) CTCTCTCT 1 chr2R:18231220-18231340 ( 74) CTCTCTCT 1 chr2R:18514893-18515013 ( 56) CTCTCTCT 1 chr3R:6157249-6157369 ( 45) CTCTCTCT 1 chrX:5965702-5965822 ( 70) CTCTTTCT 1 chr2L:4370636-4370756 ( 72) CTCTTTCT 1 chrX:395910-396030 ( 60) CTCTTTCT 1 chr3R:9512332-9512452 ( 13) CTCTTTCT 1 chr2R:8735699-8735819 ( 54) CTCTTTCT 1 chr2L:12288630-12288750 ( 77) CTCTTTCT 1 chr3L:18066489-18066609 ( 54) CTCTTTCT 1 chr3L:7847796-7847916 ( 62) CTCTCTCG 1 chr3R:4807767-4807887 ( 1) CTCTCTCG 1 chrX:17561736-17561856 ( 39) CTCTCTCG 1 chr3R:18447534-18447654 ( 67) CTCTCTCG 1 chrX:10324470-10324590 ( 31) CTCTCTTT 1 chr3L:12804469-12804589 ( 75) CTCTCTTT 1 chr3R:24767723-24767843 ( 64) CTCTCTTT 1 chr3L:8056433-8056553 ( 25) CTCTCTTT 1 chr2R:5893664-5893784 ( 56) CTCTCTTT 1 chr2L:16689810-16689930 ( 82) CTCTCTTT 1 chr3R:14730836-14730956 ( 68) CTCTCTTT 1 chr3R:4174513-4174633 ( 68) CTCTTTCG 1 chrX:14951556-14951676 ( 48) CTCTTTCG 1 chr2R:16386885-16387005 ( 23) CTCTTTCG 1 chrX:655660-655780 ( 7) CTCTTTCG 1 chrX:10930697-10930817 ( 39) CTCTTTCG 1 chrX:2334175-2334295 ( 105) CTCTTTCG 1 chr3L:20733916-20734036 ( 112) CTCTTTCG 1 chr3R:20564106-20564226 ( 26) CTCTTTTT 1 chrM:8146-8266 ( 82) CTCTTTTT 1 chr3L:20827070-20827190 ( 104) CTCTCTTG 1 chr2R:13992444-13992564 ( 73) CTCTTTTG 1 chr2R:13991820-13991940 ( 95) CTCTTTTG 1 chr3L:3257744-3257864 ( 5) CTCTTTTG 1 chr3R:11691079-11691199 ( 91) TTCTCTCT 1 chr2L:11842568-11842688 ( 31) TTCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 3.6e-019 -1223 198 -1223 -264 -1223 -1223 -1223 194 -1223 204 -1223 -1223 -1223 -1223 -1223 194 -1223 131 -1223 60 -1223 -1223 -1223 194 -1223 158 -1223 6 -1223 -1223 35 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 3.6e-019 0.000000 0.958333 0.000000 0.041667 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.604167 0.000000 0.395833 0.000000 0.000000 0.000000 1.000000 0.000000 0.729167 0.000000 0.270833 0.000000 0.000000 0.312500 0.687500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYTCT MEME-3 regular expression -------------------------------------------------------------------------------- CTCT[CT]T[CT][TG] -------------------------------------------------------------------------------- Time 20.70 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCTCTCC MEME-4 width = 8 sites = 46 llr = 386 E-value = 1.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 61a:a:a5 probability G :7:::::2 matrix T 42:a:a:2 bits 2.0 **** 1.8 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 * ***** (12.1 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCTCTCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14965527-14965647 28 1.40e-05 GTTGCGCATT CGCTCTCC TTTGGAgctc chrX:9118753-9118873 99 1.40e-05 TCCACTGTCG CGCTCTCC TCTCTGCGCT chrX:17561736-17561856 65 1.40e-05 ACACTACTCT CGCTCTCC TTTTGCATTA chr3L:8056433-8056553 16 1.40e-05 ATCCGACTTT CGCTCTCC GCTCTCTTTA chr2R:14139928-14140048 50 1.40e-05 TGctcttcct cgctctcc ttctcacact chr2R:18231220-18231340 66 1.40e-05 cctctctctt cgctctcc ctctctctGA chr3R:6157249-6157369 73 1.40e-05 ttctctTATT CGCTCTCC GGGCCACTTT chrX:1619207-1619327 19 2.90e-05 CTCACGTTCG TGCTCTCC CACTCTCCCA chr3L:12804469-12804589 101 2.90e-05 CACGCACGCT TGCTCTCC CCTTTTATTT chr3R:8094016-8094136 42 2.90e-05 TTTAACTCTC TGCTCTCC AATTCACAGA chr3L:21887006-21887126 67 2.90e-05 CGTGTGGAAA TGCTCTCC AGCTCGGCGT chr3L:881022-881142 88 2.90e-05 CGCTCTTCGC TGCTCTCC CACTGCAGTT chr2L:12421901-12422021 54 2.90e-05 ACCGCTCTCT TGCTCTCC CTCTCACTCA chrX:16835506-16835626 107 2.90e-05 CTCGCGAAGA TGCTCTCC ACTCTC chr2L:7796001-7796121 36 2.90e-05 CGATAAGCCG TGCTCTCC ATGCATCTCA chrX:12007703-12007823 76 4.32e-05 ctctctgtca cgctctcg atgtctgcat chr3R:17681668-17681788 95 4.32e-05 agctctgctc cgctctcg ctccTTTGAT chr3R:24767723-24767843 72 4.32e-05 CACTCTCTTT CGCTCTCG CTTCGATGAC chr3R:11458170-11458290 43 4.32e-05 GGCCCCCCAA CGCTCTCG CCGCTCGCTC chr3R:30827676-30827796 87 4.32e-05 CGTACGCGAC CGCTCTCG GAGCTTTTCA chr3R:18849362-18849482 88 7.31e-05 GATTTTCCGA CGCTCTCT GGGATCCGAA chr3L:13904492-13904612 68 7.31e-05 TGCAGAAAAG CTCTCTCC TTGACAGAGT chr2L:18444758-18444878 62 7.31e-05 ACGATCTGAT CTCTCTCC ACGATCTGAT chrX:20656363-20656483 64 7.31e-05 AACAAATTTA CGCTCTCT TCGCTCTCTT chr2R:5773140-5773260 46 7.31e-05 GTCTCTCCCA CGctctct ctctctctct chrX:21067591-21067711 26 7.31e-05 GCTCTGCTTC CGCTCTCT TCGGACGCGG chr2R:18514893-18515013 91 7.31e-05 GACTCTCTGG CGCTCTCT TTATCTTAGG chr3R:19730575-19730695 47 8.82e-05 CTGCTCTGCT TGCTCTCG CGCAGCGACG chrX:9284013-9284133 48 1.03e-04 TAAGTCGTCA CGCTCTCA GCTGATTAAA chr3R:7969021-7969141 108 1.03e-04 TGGCCGAGTG CGCTCTCA AAAAA chr3L:20733916-20734036 77 1.03e-04 CACTGAGGTT CGCTCTCA GCGCTCCCCC chr3L:7847796-7847916 94 1.35e-04 GTGAGTAAGT TTCTCTCC ATTTTTCCAC chrX:10324470-10324590 45 1.35e-04 cttttttcct ttctctcc gcttctcact chrX:1619772-1619892 82 1.35e-04 ggctaacgtc tgctctct gtcgatctca chr3R:13258816-13258936 59 1.35e-04 actctctctt ttctctcc ctctctctcG chr3R:4667931-4668051 17 1.64e-04 TTGCCTGCTT CCCTCTCC AATTCTGCCC chr3L:18186939-18187059 14 1.64e-04 ctgcatcttc ccctctcc CTCCCACACA chrX:13625515-13625635 106 1.64e-04 GCCCCTTACC CCCTCTCC CTCTCCC chr2R:12054859-12054979 72 1.64e-04 GCGAGTGTCC TGCTCTCA CGGCCAAAGC chr3L:22851310-22851430 38 1.64e-04 CACACTCTCC TGCTCTCA CCAACACTTC chr3R:21460045-21460165 79 1.94e-04 cttgctggta tcctctcc gtctctcgct chr3L:20443036-20443156 43 2.10e-04 AACTGGCCct ctctctct ctctctctct chrX:395910-396030 74 2.26e-04 ttctctccga ttctctcg cccgtttctc chr2R:18229816-18229936 46 2.26e-04 ctctctctcc ttctctcg ttctctctct chr3R:28324963-28325083 16 2.26e-04 AAATGGCACC TTCTCTCG GAGCATCGGG chr3R:7306826-7306946 95 3.49e-04 CTTTCACTGA CGCTCTTC GAGTTGGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14965527-14965647 1.4e-05 27_[+4]_85 chrX:9118753-9118873 1.4e-05 98_[+4]_14 chrX:17561736-17561856 1.4e-05 64_[+4]_48 chr3L:8056433-8056553 1.4e-05 15_[+4]_97 chr2R:14139928-14140048 1.4e-05 49_[+4]_63 chr2R:18231220-18231340 1.4e-05 65_[+4]_47 chr3R:6157249-6157369 1.4e-05 72_[+4]_40 chrX:1619207-1619327 2.9e-05 18_[+4]_94 chr3L:12804469-12804589 2.9e-05 100_[+4]_12 chr3R:8094016-8094136 2.9e-05 41_[+4]_71 chr3L:21887006-21887126 2.9e-05 66_[+4]_46 chr3L:881022-881142 2.9e-05 87_[+4]_25 chr2L:12421901-12422021 2.9e-05 53_[+4]_59 chrX:16835506-16835626 2.9e-05 106_[+4]_6 chr2L:7796001-7796121 2.9e-05 35_[+4]_77 chrX:12007703-12007823 4.3e-05 75_[+4]_37 chr3R:17681668-17681788 4.3e-05 94_[+4]_18 chr3R:24767723-24767843 4.3e-05 71_[+4]_41 chr3R:11458170-11458290 4.3e-05 42_[+4]_70 chr3R:30827676-30827796 4.3e-05 86_[+4]_26 chr3R:18849362-18849482 7.3e-05 87_[+4]_25 chr3L:13904492-13904612 7.3e-05 67_[+4]_45 chr2L:18444758-18444878 7.3e-05 61_[+4]_51 chrX:20656363-20656483 7.3e-05 63_[+4]_49 chr2R:5773140-5773260 7.3e-05 45_[+4]_67 chrX:21067591-21067711 7.3e-05 25_[+4]_87 chr2R:18514893-18515013 7.3e-05 90_[+4]_22 chr3R:19730575-19730695 8.8e-05 46_[+4]_66 chrX:9284013-9284133 0.0001 47_[+4]_65 chr3R:7969021-7969141 0.0001 107_[+4]_5 chr3L:20733916-20734036 0.0001 76_[+4]_36 chr3L:7847796-7847916 0.00013 93_[+4]_19 chrX:10324470-10324590 0.00013 44_[+4]_68 chrX:1619772-1619892 0.00013 81_[+4]_31 chr3R:13258816-13258936 0.00013 58_[+4]_54 chr3R:4667931-4668051 0.00016 16_[+4]_96 chr3L:18186939-18187059 0.00016 13_[+4]_99 chrX:13625515-13625635 0.00016 105_[+4]_7 chr2R:12054859-12054979 0.00016 71_[+4]_41 chr3L:22851310-22851430 0.00016 37_[+4]_75 chr3R:21460045-21460165 0.00019 78_[+4]_34 chr3L:20443036-20443156 0.00021 42_[+4]_70 chrX:395910-396030 0.00023 73_[+4]_39 chr2R:18229816-18229936 0.00023 45_[+4]_67 chr3R:28324963-28325083 0.00023 15_[+4]_97 chr3R:7306826-7306946 0.00035 94_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCTCTCC width=8 seqs=46 chr2R:14965527-14965647 ( 28) CGCTCTCC 1 chrX:9118753-9118873 ( 99) CGCTCTCC 1 chrX:17561736-17561856 ( 65) CGCTCTCC 1 chr3L:8056433-8056553 ( 16) CGCTCTCC 1 chr2R:14139928-14140048 ( 50) CGCTCTCC 1 chr2R:18231220-18231340 ( 66) CGCTCTCC 1 chr3R:6157249-6157369 ( 73) CGCTCTCC 1 chrX:1619207-1619327 ( 19) TGCTCTCC 1 chr3L:12804469-12804589 ( 101) TGCTCTCC 1 chr3R:8094016-8094136 ( 42) TGCTCTCC 1 chr3L:21887006-21887126 ( 67) TGCTCTCC 1 chr3L:881022-881142 ( 88) TGCTCTCC 1 chr2L:12421901-12422021 ( 54) TGCTCTCC 1 chrX:16835506-16835626 ( 107) TGCTCTCC 1 chr2L:7796001-7796121 ( 36) TGCTCTCC 1 chrX:12007703-12007823 ( 76) CGCTCTCG 1 chr3R:17681668-17681788 ( 95) CGCTCTCG 1 chr3R:24767723-24767843 ( 72) CGCTCTCG 1 chr3R:11458170-11458290 ( 43) CGCTCTCG 1 chr3R:30827676-30827796 ( 87) CGCTCTCG 1 chr3R:18849362-18849482 ( 88) CGCTCTCT 1 chr3L:13904492-13904612 ( 68) CTCTCTCC 1 chr2L:18444758-18444878 ( 62) CTCTCTCC 1 chrX:20656363-20656483 ( 64) CGCTCTCT 1 chr2R:5773140-5773260 ( 46) CGCTCTCT 1 chrX:21067591-21067711 ( 26) CGCTCTCT 1 chr2R:18514893-18515013 ( 91) CGCTCTCT 1 chr3R:19730575-19730695 ( 47) TGCTCTCG 1 chrX:9284013-9284133 ( 48) CGCTCTCA 1 chr3R:7969021-7969141 ( 108) CGCTCTCA 1 chr3L:20733916-20734036 ( 77) CGCTCTCA 1 chr3L:7847796-7847916 ( 94) TTCTCTCC 1 chrX:10324470-10324590 ( 45) TTCTCTCC 1 chrX:1619772-1619892 ( 82) TGCTCTCT 1 chr3R:13258816-13258936 ( 59) TTCTCTCC 1 chr3R:4667931-4668051 ( 17) CCCTCTCC 1 chr3L:18186939-18187059 ( 14) CCCTCTCC 1 chrX:13625515-13625635 ( 106) CCCTCTCC 1 chr2R:12054859-12054979 ( 72) TGCTCTCA 1 chr3L:22851310-22851430 ( 38) TGCTCTCA 1 chr3R:21460045-21460165 ( 79) TCCTCTCC 1 chr3L:20443036-20443156 ( 43) CTCTCTCT 1 chrX:395910-396030 ( 74) TTCTCTCG 1 chr2R:18229816-18229936 ( 46) TTCTCTCG 1 chr3R:28324963-28325083 ( 16) TTCTCTCG 1 chr3R:7306826-7306946 ( 95) CGCTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.3e-005 -1217 127 -1217 67 -1217 -148 155 -41 -1217 204 -1217 -1217 -1217 -1217 -1217 194 -1217 204 -1217 -1217 -1217 -1217 -1217 194 -1217 201 -1217 -358 -121 116 -32 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.3e-005 0.000000 0.586957 0.000000 0.413043 0.000000 0.086957 0.717391 0.195652 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.978261 0.000000 0.021739 0.108696 0.543478 0.195652 0.152174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCTCC MEME-4 regular expression -------------------------------------------------------------------------------- [CT]GCTCTCC -------------------------------------------------------------------------------- Time 26.56 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGHG MEME-5 width = 8 sites = 50 llr = 410 E-value = 4.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a171a:41 pos.-specific C ::2:::3: probability G :9:9:a:9 matrix T ::1:::3: bits 2.0 * ** 1.8 * ** 1.6 * ** * 1.4 ** *** * Relative 1.2 ** *** * Entropy 1.0 ** *** * (11.8 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10807399-10807519 18 1.45e-05 CGGGACGGAC AGAGAGAG CGGCCGGAGA chr3L:4692671-4692791 7 1.45e-05 GAAAAT agagagag agagagagag chrX:19127439-19127559 32 1.45e-05 CTAGGTTgaa agagagag agagagagag chrX:17651327-17651447 95 1.45e-05 AGTGGAAAGT AGAGAGAG CGCGTGGGTG chr2L:501784-501904 57 1.45e-05 GAATTTGgag agagagag cgagagagag chrX:1579063-1579183 102 1.45e-05 aaagagagat agagagag tgaaagtgag chr3R:4174513-4174633 14 4.35e-05 TCGATCGGGC AGAGAGCG AGAAATGGTA chr3L:9695439-9695559 87 4.35e-05 AGAGAGCGCA AGAGAGCG CCAAGGATGG chr3R:29064244-29064364 28 4.35e-05 TCGAGTTCTC agagagtg agaaaaagaa chr3R:15094984-15095104 77 4.35e-05 ggcacgagcg agagagtg aaagagagcg chr3R:4738990-4739110 54 4.35e-05 GCGGAAACGC agagagcg aaagagcgaa chr2R:13219276-13219396 25 4.35e-05 AAAACAATTG AGAGAGTG CTAATATCTT chr2L:4370636-4370756 53 4.35e-05 ATCAGAGCGA AGAGAGTG CCAACTCTTG chr3R:15476463-15476583 39 4.35e-05 TTCTCTGCGC AGAGAGCG CTGTGGCGAA chrX:17710890-17711010 92 4.35e-05 AGAAAAGCCG AGAGAGTG AGAACACAGC chr2R:8650083-8650203 70 4.35e-05 agagcgcggg agagagcg TCTCTTGATT chr3L:445908-446028 66 4.35e-05 AAATTTGTTT AGAGAGCG GAAATTAATG chr2R:14361817-14361937 1 4.35e-05 . AGAGAGTG TTGGATATTT chr3R:28324963-28325083 57 4.35e-05 TCGGAGTGCC AGAGAGCG GGAGACACGT chrX:5965702-5965822 58 5.75e-05 CGAGAGTAAG AGCGAGAG AAAACTCTTT chr3L:21887006-21887126 27 5.75e-05 CGTGACGCAT AGCGAGAG AAGCTATTTG chr3R:9501920-9502040 42 5.75e-05 tggaagagga aGCGAGAG CAAGAGAGTT chrX:8870150-8870270 7 5.75e-05 AATTGg agcgagag cgggagctgg chr3R:7122260-7122380 97 5.75e-05 TGGCCTTCGA AGCGAGAG CGAGAGAGAT chr2R:21524935-21525055 25 5.75e-05 TTTTTGGAAC AGCGAGAG CCAAATTATT chr2L:5078407-5078527 76 8.55e-05 CACATCAGTC AGCGAGCG ATTCAACGAA chrX:1385997-1386117 83 8.55e-05 CGAGCGGGAC AGCGAGCG GCTGGCGGTC chrX:12895461-12895581 30 1.15e-04 AGTGATCGCG AAAGAGAG GCGACGAAAG chrX:18865025-18865145 77 1.15e-04 ATCCATCCAA AAAgagag gagagtaaca chr3R:7966586-7966706 13 1.15e-04 ATGCAAGCAA AGTGAGAG AATATAGCAC chr3L:4692247-4692367 45 1.15e-04 CAAAACTTCG AGTGAGAG CAGTGAGAGC chr2L:5107787-5107907 53 1.15e-04 AGAAGAGCAA AAAGAGAG AAAGGTAAAG chr2L:9238137-9238257 91 1.15e-04 CAAGAGAGCC AGTGAGAG AATGGGGAGC chr3L:13474890-13475010 73 1.30e-04 CGGCTCTGAG AGAAAGAG GAAGAGAGAG chr2R:7146975-7147095 68 1.30e-04 AGCGCACTGG AGAAAGAG ATCTGACAGG chr2L:16520615-16520735 84 1.90e-04 AGAAGAAGCC AAAGAGTG GGACAGAAAG chr3R:21460045-21460165 43 1.90e-04 ACGTGTTGCA AGTGAGCG GCAActctct chr2L:12421901-12422021 28 1.90e-04 tgagaaaccg agtgagtg aCTAGCTGAC chr2R:16386885-16387005 47 1.90e-04 TGACTGCAGA AAAgagtg cggatggcgg chr2R:15481250-15481370 34 1.90e-04 GTTAAGATCG AGTGAGTG GGGGAATTGA chrX:7285488-7285608 9 1.90e-04 GGGACAAC AAAGAGCG AGGGAGAGCG chr3R:7306826-7306946 67 2.35e-04 CTTTCCCCGA AGAGAGAA AGAGAGAGCT chr2R:6168348-6168468 66 2.35e-04 ataaagagat agagagaa agaaccacaa chr3L:3469617-3469737 58 2.35e-04 TTTGACACAA AGAAAGTG CAATTTTTGA chr3R:21336529-21336649 67 2.35e-04 GTTGCCTCCA AGAAAGTG CCCGGCAACC chr3L:15510905-15511025 98 2.35e-04 ACATTCGCGT AGAAAGCG GGAGAGGCGG chr3L:4167488-4167608 30 2.35e-04 AATTCTCCGG AGAAAGTG TGTGTGCAAG chr3L:21060296-21060416 77 2.65e-04 agagcgagac agagagCA ACTGGTGCCG chr2R:11493993-11494113 67 2.65e-04 agagagatgc agagagta gacacaggag chr2L:5376534-5376654 14 3.22e-04 TGGTTTTGGG AACGAGCG CTAAAGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10807399-10807519 1.5e-05 17_[+5]_95 chr3L:4692671-4692791 1.5e-05 6_[+5]_106 chrX:19127439-19127559 1.5e-05 31_[+5]_81 chrX:17651327-17651447 1.5e-05 94_[+5]_18 chr2L:501784-501904 1.5e-05 56_[+5]_56 chrX:1579063-1579183 1.5e-05 101_[+5]_11 chr3R:4174513-4174633 4.4e-05 13_[+5]_99 chr3L:9695439-9695559 4.4e-05 86_[+5]_26 chr3R:29064244-29064364 4.4e-05 27_[+5]_85 chr3R:15094984-15095104 4.4e-05 76_[+5]_36 chr3R:4738990-4739110 4.4e-05 53_[+5]_59 chr2R:13219276-13219396 4.4e-05 24_[+5]_88 chr2L:4370636-4370756 4.4e-05 52_[+5]_60 chr3R:15476463-15476583 4.4e-05 38_[+5]_74 chrX:17710890-17711010 4.4e-05 91_[+5]_21 chr2R:8650083-8650203 4.4e-05 69_[+5]_43 chr3L:445908-446028 4.4e-05 65_[+5]_47 chr2R:14361817-14361937 4.4e-05 [+5]_112 chr3R:28324963-28325083 4.4e-05 56_[+5]_56 chrX:5965702-5965822 5.8e-05 57_[+5]_55 chr3L:21887006-21887126 5.8e-05 26_[+5]_86 chr3R:9501920-9502040 5.8e-05 41_[+5]_71 chrX:8870150-8870270 5.8e-05 6_[+5]_106 chr3R:7122260-7122380 5.8e-05 96_[+5]_16 chr2R:21524935-21525055 5.8e-05 24_[+5]_88 chr2L:5078407-5078527 8.6e-05 75_[+5]_37 chrX:1385997-1386117 8.6e-05 82_[+5]_30 chrX:12895461-12895581 0.00012 29_[+5]_83 chrX:18865025-18865145 0.00012 76_[+5]_36 chr3R:7966586-7966706 0.00012 12_[+5]_100 chr3L:4692247-4692367 0.00012 44_[+5]_68 chr2L:5107787-5107907 0.00012 52_[+5]_60 chr2L:9238137-9238257 0.00012 90_[+5]_22 chr3L:13474890-13475010 0.00013 72_[+5]_40 chr2R:7146975-7147095 0.00013 67_[+5]_45 chr2L:16520615-16520735 0.00019 83_[+5]_29 chr3R:21460045-21460165 0.00019 42_[+5]_70 chr2L:12421901-12422021 0.00019 27_[+5]_85 chr2R:16386885-16387005 0.00019 46_[+5]_66 chr2R:15481250-15481370 0.00019 33_[+5]_79 chrX:7285488-7285608 0.00019 8_[+5]_104 chr3R:7306826-7306946 0.00023 66_[+5]_46 chr2R:6168348-6168468 0.00023 65_[+5]_47 chr3L:3469617-3469737 0.00023 57_[+5]_55 chr3R:21336529-21336649 0.00023 66_[+5]_46 chr3L:15510905-15511025 0.00023 97_[+5]_15 chr3L:4167488-4167608 0.00023 29_[+5]_83 chr3L:21060296-21060416 0.00026 76_[+5]_36 chr2R:11493993-11494113 0.00026 66_[+5]_46 chr2L:5376534-5376654 0.00032 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGHG width=8 seqs=50 chr2R:10807399-10807519 ( 18) AGAGAGAG 1 chr3L:4692671-4692791 ( 7) AGAGAGAG 1 chrX:19127439-19127559 ( 32) AGAGAGAG 1 chrX:17651327-17651447 ( 95) AGAGAGAG 1 chr2L:501784-501904 ( 57) AGAGAGAG 1 chrX:1579063-1579183 ( 102) AGAGAGAG 1 chr3R:4174513-4174633 ( 14) AGAGAGCG 1 chr3L:9695439-9695559 ( 87) AGAGAGCG 1 chr3R:29064244-29064364 ( 28) AGAGAGTG 1 chr3R:15094984-15095104 ( 77) AGAGAGTG 1 chr3R:4738990-4739110 ( 54) AGAGAGCG 1 chr2R:13219276-13219396 ( 25) AGAGAGTG 1 chr2L:4370636-4370756 ( 53) AGAGAGTG 1 chr3R:15476463-15476583 ( 39) AGAGAGCG 1 chrX:17710890-17711010 ( 92) AGAGAGTG 1 chr2R:8650083-8650203 ( 70) AGAGAGCG 1 chr3L:445908-446028 ( 66) AGAGAGCG 1 chr2R:14361817-14361937 ( 1) AGAGAGTG 1 chr3R:28324963-28325083 ( 57) AGAGAGCG 1 chrX:5965702-5965822 ( 58) AGCGAGAG 1 chr3L:21887006-21887126 ( 27) AGCGAGAG 1 chr3R:9501920-9502040 ( 42) AGCGAGAG 1 chrX:8870150-8870270 ( 7) AGCGAGAG 1 chr3R:7122260-7122380 ( 97) AGCGAGAG 1 chr2R:21524935-21525055 ( 25) AGCGAGAG 1 chr2L:5078407-5078527 ( 76) AGCGAGCG 1 chrX:1385997-1386117 ( 83) AGCGAGCG 1 chrX:12895461-12895581 ( 30) AAAGAGAG 1 chrX:18865025-18865145 ( 77) AAAGAGAG 1 chr3R:7966586-7966706 ( 13) AGTGAGAG 1 chr3L:4692247-4692367 ( 45) AGTGAGAG 1 chr2L:5107787-5107907 ( 53) AAAGAGAG 1 chr2L:9238137-9238257 ( 91) AGTGAGAG 1 chr3L:13474890-13475010 ( 73) AGAAAGAG 1 chr2R:7146975-7147095 ( 68) AGAAAGAG 1 chr2L:16520615-16520735 ( 84) AAAGAGTG 1 chr3R:21460045-21460165 ( 43) AGTGAGCG 1 chr2L:12421901-12422021 ( 28) AGTGAGTG 1 chr2R:16386885-16387005 ( 47) AAAGAGTG 1 chr2R:15481250-15481370 ( 34) AGTGAGTG 1 chrX:7285488-7285608 ( 9) AAAGAGCG 1 chr3R:7306826-7306946 ( 67) AGAGAGAA 1 chr2R:6168348-6168468 ( 66) AGAGAGAA 1 chr3L:3469617-3469737 ( 58) AGAAAGTG 1 chr3R:21336529-21336649 ( 67) AGAAAGTG 1 chr3L:15510905-15511025 ( 98) AGAAAGCG 1 chr3L:4167488-4167608 ( 30) AGAAAGTG 1 chr3L:21060296-21060416 ( 77) AGAGAGCA 1 chr2R:11493993-11494113 ( 67) AGAGAGTA 1 chr2L:5376534-5376654 ( 14) AACGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.63034 E= 4.3e-005 199 -1229 -1229 -1229 -85 -1229 181 -1229 147 -43 -1229 -112 -107 -1229 185 -1229 199 -1229 -1229 -1229 -1229 -1229 203 -1229 80 20 -1229 11 -165 -1229 191 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 4.3e-005 1.000000 0.000000 0.000000 0.000000 0.140000 0.000000 0.860000 0.000000 0.700000 0.180000 0.000000 0.120000 0.120000 0.000000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.440000 0.280000 0.000000 0.280000 0.080000 0.000000 0.920000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGHG MEME-5 regular expression -------------------------------------------------------------------------------- AGAGAG[ACT]G -------------------------------------------------------------------------------- Time 32.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11842568-11842688 2.33e-02 120 chr2L:13509919-13510039 6.81e-01 120 chr3L:22851310-22851430 1.49e-04 75_[+2(2.85e-05)]_37 chrX:1579063-1579183 2.21e-05 73_[+5(1.45e-05)]_11_[+2(5.79e-05)]_\ 1_[+5(1.45e-05)]_11 chr2L:20263214-20263334 3.79e-01 120 chr3R:29876363-29876483 2.26e-03 120 chr3R:28324963-28325083 4.47e-05 38_[+5(1.45e-05)]_10_[+5(4.35e-05)]_\ 56 chr3R:14730836-14730956 4.93e-05 52_[+1(3.09e-05)]_7_[+3(6.50e-05)]_\ 45 chr2R:21524935-21525055 5.86e-02 24_[+5(5.75e-05)]_88 chr2L:9238137-9238257 3.05e-02 81_[+2(5.79e-05)]_31 chrX:13272766-13272886 6.32e-02 120 chr3R:23296757-23296877 6.87e-01 120 chrX:1385997-1386117 2.48e-02 32_[+5(4.35e-05)]_30_[+5(8.55e-05)]_\ 4_[+5(8.55e-05)]_30 chr3L:9338038-9338158 2.92e-02 120 chr2L:1200126-1200246 9.74e-01 120 chr3L:7432945-7433065 5.51e-01 120 chr3R:6157249-6157369 7.83e-06 38_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_10_[+4(1.40e-05)]_40 chr2L:16528598-16528718 5.75e-01 120 chrX:12745257-12745377 9.94e-01 120 chr2R:18514893-18515013 1.24e-04 47_[+3(4.80e-05)]_[+1(1.59e-05)]_2_\ [+1(1.59e-05)]_17_[+1(3.09e-05)]_22 chr3L:12407909-12408029 8.22e-01 120 chr2L:7796001-7796121 5.87e-04 35_[+4(2.90e-05)]_77 chr2R:22308065-22308185 6.82e-01 120 chrX:16835506-16835626 7.15e-03 106_[+4(2.90e-05)]_6 chrX:7068321-7068441 6.34e-07 19_[+5(1.45e-05)]_43_[+3(6.50e-05)]_\ 42 chr3L:14619119-14619239 6.79e-01 120 chr2L:11184644-11184764 4.75e-01 120 chr3L:4167488-4167608 2.81e-05 56_[+1(4.58e-05)]_56 chr2R:15482806-15482926 5.57e-05 79_[+2(8.62e-05)]_24_[+3(6.50e-05)]_\ 1 chr3R:30827676-30827796 3.63e-02 86_[+4(4.32e-05)]_26 chr3L:20733916-20734036 2.97e-04 111_[+3(8.11e-05)]_1 chr2L:10757149-10757269 1.12e-01 120 chr2R:14361817-14361937 6.18e-03 [+5(4.35e-05)]_44_[+5(1.45e-05)]_60 chr2L:501784-501904 3.95e-04 54_[+5(1.45e-05)]_4_[+5(1.45e-05)]_\ 46 chrX:17651327-17651447 8.54e-05 40_[+5(1.45e-05)]_46_[+5(1.45e-05)]_\ 18 chr2R:24794163-24794283 5.50e-01 120 chr3L:18066489-18066609 5.06e-06 51_[+3(6.50e-05)]_[+1(1.59e-05)]_53 chr2R:7775783-7775903 6.52e-01 120 chr3R:9899690-9899810 7.37e-01 120 chr3R:5611320-5611440 2.38e-01 120 chr3R:16128607-16128727 2.80e-02 120 chr2R:8148553-8148673 9.92e-01 120 chr2R:11493993-11494113 1.80e-06 55_[+2(5.79e-05)]_25_[+1(4.58e-05)]_\ 24 chr3L:15305321-15305441 2.59e-03 [+4(1.40e-05)]_112 chrX:7285488-7285608 1.06e-06 70_[+1(3.09e-05)]_42 chr2L:5107787-5107907 1.43e-02 53_[+2(5.79e-05)]_14_[+2(2.85e-05)]_\ 7_[+2(2.85e-05)]_22 chr2L:5078407-5078527 2.15e-01 75_[+5(8.55e-05)]_37 chrX:2593445-2593565 3.84e-01 120 chr3R:7122260-7122380 1.91e-03 96_[+5(5.75e-05)]_1_[+2(2.85e-05)]_\ 7 chr3L:21643832-21643952 3.42e-01 120 chr2R:18231220-18231340 1.15e-05 56_[+1(1.59e-05)]_1_[+4(1.40e-05)]_\ [+1(1.59e-05)]_39 chrX:1562515-1562635 2.44e-07 13_[+4(1.40e-05)]_88_[+5(1.45e-05)]_\ 3 chr2L:16689810-16689930 3.10e-05 81_[+3(6.50e-05)]_[+1(1.59e-05)]_23 chr2R:14139928-14140048 2.05e-05 49_[+4(1.40e-05)]_8_[+1(1.59e-05)]_\ [+1(1.59e-05)]_22_[+4(4.32e-05)]_9 chrX:2334175-2334295 8.88e-03 39_[+3(3.30e-05)]_57_[+3(8.11e-05)]_\ 8 chr2R:15481250-15481370 1.76e-01 120 chr2L:18945906-18946026 6.97e-01 120 chrX:15501561-15501681 2.54e-04 92_[+4(4.32e-05)]_20 chrX:11685739-11685859 6.96e-02 120 chr2R:18229816-18229936 8.95e-05 31_[+1(1.59e-05)]_16_[+1(1.59e-05)]_\ 57 chr3R:8861081-8861201 5.95e-01 120 chrX:21067591-21067711 1.94e-03 25_[+1(3.09e-05)]_19_[+1(3.09e-05)]_\ 60 chr2L:11966611-11966731 6.83e-01 120 chrX:18489693-18489813 2.05e-02 120 chr2R:12054859-12054979 1.56e-06 27_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+3(6.50e-05)]_2_[+3(6.50e-05)]_59 chrX:497540-497660 3.04e-01 120 chr3L:15684249-15684369 4.07e-02 120 chr3R:7969021-7969141 7.43e-04 120 chr3L:445908-446028 1.26e-02 11_[+5(4.35e-05)]_24_[+5(8.55e-05)]_\ 14_[+5(4.35e-05)]_47 chr3L:15510905-15511025 4.45e-04 120 chrX:5044179-5044299 9.94e-01 120 chr2R:5893664-5893784 2.79e-04 55_[+3(6.50e-05)]_5_[+1(4.58e-05)]_\ 44 chr3R:18986387-18986507 1.53e-01 120 chr2R:17802557-17802677 5.74e-02 120 chr2R:8650083-8650203 3.50e-03 56_[+2(2.85e-05)]_4_[+2(2.85e-05)]_\ 44 chrX:13625515-13625635 4.83e-03 84_[+1(6.13e-05)]_28 chrX:10930697-10930817 1.84e-05 38_[+3(8.11e-05)]_29_[+1(1.59e-05)]_\ 37 chr3R:18447534-18447654 7.36e-06 66_[+3(4.80e-05)]_11_[+1(6.13e-05)]_\ 27 chr3L:4692247-4692367 8.55e-02 120 chrX:1562094-1562214 5.95e-01 120 chr3R:7966586-7966706 8.34e-02 120 chrX:8870150-8870270 4.36e-02 6_[+5(5.75e-05)]_58_[+5(5.75e-05)]_\ 40 chr3R:19730575-19730695 7.82e-03 46_[+4(8.82e-05)]_66 chrX:655660-655780 1.04e-03 6_[+3(8.11e-05)]_106 chr3L:3257744-3257864 3.04e-03 120 chr3R:17702949-17703069 1.34e-01 120 chrX:1578624-1578744 3.50e-03 22_[+4(1.40e-05)]_90 chr2R:24591172-24591292 6.13e-02 120 chrX:15501963-15502083 4.51e-03 23_[+4(1.40e-05)]_89 chr3R:9501416-9501536 6.38e-01 120 chr3R:11458170-11458290 2.39e-04 42_[+4(4.32e-05)]_70 chr3L:13182831-13182951 3.06e-01 120 chr2L:21012621-21012741 3.81e-01 120 chr3L:728338-728458 9.99e-01 120 chr2R:16386885-16387005 5.08e-04 22_[+3(8.11e-05)]_90 chr2L:8129686-8129806 1.73e-01 120 chr2L:12288630-12288750 1.82e-04 56_[+1(1.59e-05)]_[+1(1.59e-05)]_4_\ [+3(3.30e-05)]_36 chrX:18276865-18276985 1.02e-04 54_[+2(2.85e-05)]_58 chr2R:8696257-8696377 9.28e-01 120 chr2L:12421901-12422021 9.05e-07 11_[+5(8.55e-05)]_26_[+1(3.09e-05)]_\ [+4(2.90e-05)]_59 chr3R:13527051-13527171 1.86e-01 120 chr2R:5773140-5773260 6.98e-05 47_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_49 chr3L:8056433-8056553 4.97e-07 15_[+4(1.40e-05)]_13_[+1(1.59e-05)]_\ 37_[+3(9.94e-05)]_31 chrX:17561736-17561856 1.35e-04 24_[+1(3.09e-05)]_6_[+3(4.80e-05)]_\ 18_[+4(1.40e-05)]_48 chrX:17710890-17711010 1.58e-02 67_[+5(4.35e-05)]_16_[+5(4.35e-05)]_\ 21 chrX:14947188-14947308 7.00e-01 120 chr3R:15131035-15131155 8.14e-02 120 chr3R:9501920-9502040 7.95e-02 41_[+5(5.75e-05)]_71 chr3L:18186939-18187059 1.94e-04 61_[+1(1.59e-05)]_[+1(1.59e-05)]_43 chr2R:7477760-7477880 5.83e-01 120 chrX:1623313-1623433 5.09e-03 25_[+2(2.85e-05)]_1_[+5(1.45e-05)]_\ 8_[+5(1.45e-05)]_[+5(1.45e-05)]_[+5(1.45e-05)]_46 chr3R:4394302-4394422 1.33e-03 39_[+2(5.79e-05)]_73 chr2L:18464039-18464159 3.93e-01 120 chr3L:881022-881142 7.19e-06 33_[+2(2.85e-05)]_17_[+1(7.63e-05)]_\ 21_[+4(2.90e-05)]_25 chr3R:13258816-13258936 3.29e-05 49_[+1(1.59e-05)]_9_[+1(1.59e-05)]_\ 29_[+1(1.59e-05)]_[+3(6.50e-05)]_1 chr3L:21060296-21060416 4.72e-04 63_[+2(2.85e-05)]_4_[+2(8.62e-05)]_\ 37 chr3L:3513554-3513674 9.50e-01 120 chr2L:11069313-11069433 1.61e-01 120 chr2R:8735699-8735819 4.07e-03 53_[+3(3.30e-05)]_59 chr2L:16463800-16463920 8.59e-01 120 chr3R:9512332-9512452 7.39e-05 12_[+3(3.30e-05)]_44_[+1(1.59e-05)]_\ 48 chr3L:8643923-8644043 9.32e-01 120 chr3R:14917655-14917775 6.78e-01 120 chr3L:16167837-16167957 5.77e-01 120 chr2R:6017015-6017135 9.34e-01 120 chr2R:12044562-12044682 1.20e-01 120 chrX:20656363-20656483 4.32e-05 63_[+1(3.09e-05)]_1_[+1(3.09e-05)]_\ 40 chr3R:14852823-14852943 8.62e-01 120 chr2R:7146975-7147095 6.08e-03 51_[+5(1.45e-05)]_61 chr2L:247583-247703 9.50e-01 120 chr3R:15901371-15901491 3.72e-06 58_[+1(6.13e-05)]_17_[+5(1.45e-05)]_\ 29 chr3R:30843615-30843735 3.18e-01 120 chr2L:15109263-15109383 5.25e-04 40_[+5(1.45e-05)]_72 chrX:395910-396030 3.86e-06 49_[+1(1.59e-05)]_2_[+3(3.30e-05)]_\ 53 chr3L:392926-393046 3.33e-05 66_[+1(1.59e-05)]_46 chr2R:7158270-7158390 2.74e-02 27_[+2(5.79e-05)]_85 chr3R:18912927-18913047 5.97e-03 4_[+2(5.79e-05)]_108 chrX:19127439-19127559 2.40e-03 31_[+5(1.45e-05)]_[+5(1.45e-05)]_73 chr3L:18952629-18952749 6.48e-01 120 chr3L:11369955-11370075 5.26e-01 120 chrX:14951556-14951676 1.61e-01 47_[+3(8.11e-05)]_65 chr3R:13782730-13782850 2.42e-01 120 chr2R:8177680-8177800 6.44e-01 120 chr3R:21336529-21336649 8.82e-02 120 chrX:9284013-9284133 4.29e-05 64_[+5(4.35e-05)]_48 chr2L:11968308-11968428 9.22e-01 120 chr3R:30272312-30272432 7.42e-01 120 chr3L:4692671-4692791 1.19e-03 6_[+5(1.45e-05)]_[+5(1.45e-05)]_98 chr3R:4807767-4807887 1.09e-05 [+3(4.80e-05)]_64_[+2(2.85e-05)]_40 chr3R:21460045-21460165 1.12e-06 54_[+1(1.59e-05)]_[+1(1.59e-05)]_18_\ [+1(7.63e-05)]_24 chr3L:15304192-15304312 1.60e-06 5_[+4(1.40e-05)]_88_[+2(2.85e-05)]_\ 11 chr3L:13474890-13475010 2.73e-03 82_[+5(1.45e-05)]_30 chr3R:4667931-4668051 7.47e-02 120 chr3R:23869469-23869589 8.03e-01 120 chr3R:11200149-11200269 4.66e-05 54_[+5(4.35e-05)]_58 chr3R:8090474-8090594 2.03e-02 35_[+1(7.63e-05)]_77 chr2R:13991820-13991940 1.33e-05 1_[+1(3.09e-05)]_111 chr2R:5999564-5999684 7.73e-01 120 chr2R:13992444-13992564 1.30e-02 6_[+1(7.63e-05)]_106 chr3R:15476463-15476583 8.00e-07 38_[+5(4.35e-05)]_10_[+2(5.79e-05)]_\ 27_[+1(3.09e-05)]_21 chr3R:24767723-24767843 1.80e-04 51_[+1(4.58e-05)]_2_[+1(6.13e-05)]_\ 2_[+4(4.32e-05)]_41 chr3L:10759888-10760008 9.09e-02 120 chr3L:9053590-9053710 6.42e-02 43_[+2(5.79e-05)]_69 chr2R:18344999-18345119 3.81e-03 120 chrX:18865025-18865145 2.08e-02 96_[+2(2.85e-05)]_16 chr3L:3469617-3469737 2.27e-01 120 chr3R:21591416-21591536 7.00e-01 120 chrX:12471552-12471672 7.84e-05 4_[+1(1.59e-05)]_108 chr3R:17681668-17681788 8.50e-05 72_[+1(1.59e-05)]_14_[+4(4.32e-05)]_\ 18 chr3L:9380464-9380584 1.74e-01 120 chr3R:8316882-8317002 8.94e-01 120 chr3L:20317465-20317585 9.35e-01 120 chr2L:18444758-18444878 2.54e-03 43_[+1(4.58e-05)]_10_[+1(4.58e-05)]_\ 10_[+1(4.58e-05)]_10_[+1(4.58e-05)]_15 chrX:1619772-1619892 2.50e-04 57_[+1(3.09e-05)]_55 chr3R:21077719-21077839 2.14e-01 120 chr2R:7170958-7171078 4.68e-04 40_[+2(2.85e-05)]_[+2(2.85e-05)]_27_\ [+2(8.62e-05)]_29 chrX:7697510-7697630 6.77e-03 120 chrX:11917244-11917364 9.73e-01 120 chr3R:24266883-24267003 4.97e-01 120 chr2R:10581511-10581631 6.75e-01 120 chrX:9118753-9118873 3.53e-05 29_[+1(1.59e-05)]_[+1(1.59e-05)]_53_\ [+4(1.40e-05)]_14 chr3R:22526824-22526944 1.67e-01 120 chr3L:13904492-13904612 7.14e-06 67_[+1(4.58e-05)]_13_[+1(1.59e-05)]_\ 6_[+1(1.59e-05)]_10 chr2L:11182741-11182861 1.14e-01 120 chrX:12007703-12007823 7.34e-05 47_[+1(1.59e-05)]_2_[+1(1.59e-05)]_\ 10_[+4(4.32e-05)]_37 chrX:15163036-15163156 3.43e-05 59_[+1(1.59e-05)]_[+1(1.59e-05)]_45 chr2L:11175586-11175706 9.54e-01 120 chr2L:4370636-4370756 8.64e-06 52_[+5(4.35e-05)]_11_[+3(3.30e-05)]_\ 41 chr3R:29935862-29935982 9.97e-01 120 chr2L:21019798-21019918 7.91e-02 120 chrM:8146-8266 6.73e-02 81_[+3(9.94e-05)]_31 chr2R:13219276-13219396 3.06e-02 24_[+5(4.35e-05)]_88 chr3L:20443036-20443156 3.41e-05 40_[+1(1.59e-05)]_[+1(1.59e-05)]_6_\ [+1(1.59e-05)]_50 chrX:16621565-16621685 1.00e+00 120 chr2L:8012630-8012750 2.20e-01 53_[+2(8.62e-05)]_59 chrX:17680222-17680342 3.58e-01 120 chr3R:15298123-15298243 4.07e-01 120 chr3R:11691079-11691199 1.54e-02 120 chr3R:4738990-4739110 6.92e-05 53_[+5(4.35e-05)]_8_[+2(5.79e-05)]_\ 43 chr3L:21887006-21887126 1.60e-05 26_[+5(5.75e-05)]_13_[+1(7.63e-05)]_\ 11_[+4(2.90e-05)]_46 chrX:14946597-14946717 9.62e-01 120 chr2L:5376534-5376654 1.02e-01 120 chr3R:16316999-16317119 3.79e-01 120 chr2L:12545780-12545900 6.34e-03 85_[+5(1.45e-05)]_4_[+5(1.45e-05)]_\ 15 chr3L:1325471-1325591 9.49e-01 120 chr2R:23722596-23722716 1.15e-01 120 chrX:12895461-12895581 6.29e-02 120 chr3R:8094016-8094136 3.24e-02 41_[+4(2.90e-05)]_71 chr3R:17377696-17377816 6.24e-02 49_[+2(8.62e-05)]_63 chr3L:10533695-10533815 3.92e-02 120 chrX:1610159-1610279 8.38e-07 9_[+1(1.59e-05)]_81_[+2(5.79e-05)]_\ 14 chr3L:3436137-3436257 5.87e-01 120 chr3R:26098650-26098770 8.82e-01 120 chr3R:27201151-27201271 3.52e-01 120 chr2R:7145216-7145336 5.06e-01 120 chr3R:15094984-15095104 4.14e-04 76_[+5(4.35e-05)]_2_[+5(4.35e-05)]_\ 26 chr3R:29064244-29064364 1.95e-02 27_[+5(4.35e-05)]_85 chrM:13756-13876 6.07e-01 120 chr3R:16240596-16240716 6.86e-01 120 chr3L:18634781-18634901 6.17e-01 120 chr3L:20688562-20688682 3.99e-01 120 chr3L:18214077-18214197 5.89e-01 120 chr3R:20564106-20564226 2.28e-02 25_[+3(9.94e-05)]_87 chr3L:20827070-20827190 8.77e-03 120 chr2R:6169055-6169175 4.47e-03 120 chr2R:10807399-10807519 6.61e-03 17_[+5(1.45e-05)]_19_[+5(1.45e-05)]_\ 68 chr3L:12804469-12804589 5.56e-05 17_[+1(4.58e-05)]_8_[+1(1.59e-05)]_\ 31_[+1(6.13e-05)]_20_[+4(2.90e-05)]_12 chr2R:6168348-6168468 9.30e-03 86_[+2(5.79e-05)]_26 chr3R:30571006-30571126 4.61e-02 37_[+1(7.63e-05)]_75 chr3L:760586-760706 2.72e-01 120 chr3R:31945009-31945129 3.66e-01 120 chr2R:15600414-15600534 4.52e-03 120 chr2L:3896150-3896270 6.29e-03 16_[+2(2.85e-05)]_96 chr2R:14965527-14965647 2.91e-05 27_[+4(1.40e-05)]_24_[+1(1.59e-05)]_\ 53 chrX:1947386-1947506 9.27e-01 120 chrX:1619207-1619327 2.08e-04 18_[+4(2.90e-05)]_10_[+3(4.80e-05)]_\ 76 chr3L:9695439-9695559 1.07e-02 75_[+2(2.85e-05)]_3_[+5(4.35e-05)]_\ 26 chr2R:17852361-17852481 9.99e-01 120 chr2R:21701304-21701424 4.48e-05 74_[+1(3.09e-05)]_38 chr2R:22557227-22557347 5.57e-01 120 chrX:5965702-5965822 1.55e-05 37_[+5(1.45e-05)]_12_[+5(5.75e-05)]_\ 4_[+3(3.30e-05)]_43 chr3L:8151998-8152118 2.21e-01 120 chr3L:4148575-4148695 1.15e-01 33_[+2(8.62e-05)]_79 chr3R:4174513-4174633 2.97e-04 13_[+5(4.35e-05)]_27_[+5(4.35e-05)]_\ 11_[+3(8.11e-05)]_45 chrX:10324470-10324590 1.52e-03 28_[+1(6.13e-05)]_22_[+1(6.13e-05)]_\ 54 chr2L:16520615-16520735 4.80e-03 46_[+5(4.35e-05)]_66 chr2R:16310405-16310525 9.75e-01 120 chr3R:7306826-7306946 6.87e-06 65_[+2(5.79e-05)]_1_[+5(1.45e-05)]_\ 38 chr3L:7847796-7847916 7.06e-05 61_[+3(4.80e-05)]_4_[+1(1.59e-05)]_\ 39 chr3R:18849362-18849482 1.04e-04 41_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_22_[+1(3.09e-05)]_25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************